Diff of the two buildlogs: -- --- b1/build.log 2021-12-31 01:42:23.290048960 +0000 +++ b2/build.log 2021-12-31 01:53:19.917561123 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Dec 30 13:20:52 -12 2021 -I: pbuilder-time-stamp: 1640913652 +I: Current time: Thu Feb 2 22:05:27 +14 2023 +I: pbuilder-time-stamp: 1675325127 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -16,8 +16,8 @@ I: copying [./plastimatch_1.9.3+dfsg.1-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.5i0WHkgD/trustedkeys.kbx': General error -gpgv: Signature made Fri Jan 22 08:18:57 2021 -12 +gpgv: keyblock resource '/tmp/dpkg-verify-sig.vzKN5X8_/trustedkeys.kbx': General error +gpgv: Signature made Sat Jan 23 10:18:57 2021 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -27,135 +27,169 @@ dpkg-source: info: unpacking plastimatch_1.9.3+dfsg.1-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/111235/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1980787/tmp/hooks/D01_modify_environment starting +debug: Running on ionos5-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1980787/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1980787/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=15' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=16' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='624bdc60fd644d148a666147d5ca358a' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='111235' - PS1='# ' - PS2='> ' + INVOCATION_ID=0bb9e726b02c496abda3ebb693b0bb65 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1980787 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.xGXeoFEL8X/pbuilderrc_4956 --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.xGXeoFEL8X/b1 --logfile b1/build.log plastimatch_1.9.3+dfsg.1-1.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://78.137.99.97:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.xGXeoFEL8X/pbuilderrc_LWQn --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.xGXeoFEL8X/b2 --logfile b2/build.log plastimatch_1.9.3+dfsg.1-1.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://85.184.249.68:3128 I: uname -a - Linux ionos11-amd64 5.10.0-10-amd64 #1 SMP Debian 5.10.84-1 (2021-12-08) x86_64 GNU/Linux + Linux i-capture-the-hostname 5.14.0-0.bpo.2-amd64 #1 SMP Debian 5.14.9-2~bpo11+1 (2021-10-10) x86_64 GNU/Linux I: ls -l /bin total 5476 - -rwxr-xr-x 1 root root 1234376 Aug 4 08:25 bash - -rwxr-xr-x 3 root root 38984 Jul 20 2020 bunzip2 - -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzcat - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep - -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzip2 - -rwxr-xr-x 1 root root 18424 Jul 20 2020 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore - -rwxr-xr-x 1 root root 43936 Sep 23 2020 cat - -rwxr-xr-x 1 root root 72672 Sep 23 2020 chgrp - -rwxr-xr-x 1 root root 64448 Sep 23 2020 chmod - -rwxr-xr-x 1 root root 72672 Sep 23 2020 chown - -rwxr-xr-x 1 root root 151168 Sep 23 2020 cp - -rwxr-xr-x 1 root root 125560 Dec 10 2020 dash - -rwxr-xr-x 1 root root 113664 Sep 23 2020 date - -rwxr-xr-x 1 root root 80968 Sep 23 2020 dd - -rwxr-xr-x 1 root root 93936 Sep 23 2020 df - -rwxr-xr-x 1 root root 147176 Sep 23 2020 dir - -rwxr-xr-x 1 root root 84440 Jul 28 07:09 dmesg - lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname - -rwxr-xr-x 1 root root 39712 Sep 23 2020 echo - -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep - -rwxr-xr-x 1 root root 39680 Sep 23 2020 false - -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep - -rwxr-xr-x 1 root root 69032 Jul 28 07:09 findmnt - -rwsr-xr-x 1 root root 34896 Feb 26 2021 fusermount - -rwxr-xr-x 1 root root 203072 Nov 9 2020 grep - -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip - -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe - -rwxr-xr-x 1 root root 98048 Mar 2 2021 gzip - -rwxr-xr-x 1 root root 22600 Nov 6 2019 hostname - -rwxr-xr-x 1 root root 72840 Sep 23 2020 ln - -rwxr-xr-x 1 root root 56952 Feb 7 2020 login - -rwxr-xr-x 1 root root 147176 Sep 23 2020 ls - -rwxr-xr-x 1 root root 149736 Jul 28 07:09 lsblk - -rwxr-xr-x 1 root root 85184 Sep 23 2020 mkdir - -rwxr-xr-x 1 root root 76896 Sep 23 2020 mknod - -rwxr-xr-x 1 root root 48064 Sep 23 2020 mktemp - -rwxr-xr-x 1 root root 59632 Jul 28 07:09 more - -rwsr-xr-x 1 root root 55528 Jul 28 07:09 mount - -rwxr-xr-x 1 root root 18664 Jul 28 07:09 mountpoint - -rwxr-xr-x 1 root root 147080 Sep 23 2020 mv - lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 43872 Sep 23 2020 pwd - lrwxrwxrwx 1 root root 4 Aug 4 08:25 rbash -> bash - -rwxr-xr-x 1 root root 52032 Sep 23 2020 readlink - -rwxr-xr-x 1 root root 72704 Sep 23 2020 rm - -rwxr-xr-x 1 root root 52032 Sep 23 2020 rmdir - -rwxr-xr-x 1 root root 27472 Sep 27 2020 run-parts - -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Dec 20 21:24 sh -> dash - -rwxr-xr-x 1 root root 43808 Sep 23 2020 sleep - -rwxr-xr-x 1 root root 84928 Sep 23 2020 stty - -rwsr-xr-x 1 root root 71912 Jul 28 07:09 su - -rwxr-xr-x 1 root root 39744 Sep 23 2020 sync - -rwxr-xr-x 1 root root 531928 Feb 16 2021 tar - -rwxr-xr-x 1 root root 14456 Sep 27 2020 tempfile - -rwxr-xr-x 1 root root 101408 Sep 23 2020 touch - -rwxr-xr-x 1 root root 39680 Sep 23 2020 true - -rwxr-xr-x 1 root root 14328 Feb 26 2021 ulockmgr_server - -rwsr-xr-x 1 root root 35040 Jul 28 07:09 umount - -rwxr-xr-x 1 root root 39744 Sep 23 2020 uname - -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress - -rwxr-xr-x 1 root root 147176 Sep 23 2020 vdir - -rwxr-xr-x 1 root root 63744 Jul 28 07:09 wdctl - lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat - -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp - -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff - -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep - -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep - -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce - -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep - -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless - -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore - -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew -I: user script /srv/workspace/pbuilder/111235/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1234376 Aug 5 2021 bash + -rwxr-xr-x 3 root root 38984 Jul 21 2020 bunzip2 + -rwxr-xr-x 3 root root 38984 Jul 21 2020 bzcat + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep + -rwxr-xr-x 3 root root 38984 Jul 21 2020 bzip2 + -rwxr-xr-x 1 root root 18424 Jul 21 2020 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore + -rwxr-xr-x 1 root root 43936 Sep 24 2020 cat + -rwxr-xr-x 1 root root 72672 Sep 24 2020 chgrp + -rwxr-xr-x 1 root root 64448 Sep 24 2020 chmod + -rwxr-xr-x 1 root root 72672 Sep 24 2020 chown + -rwxr-xr-x 1 root root 151168 Sep 24 2020 cp + -rwxr-xr-x 1 root root 125560 Dec 11 2020 dash + -rwxr-xr-x 1 root root 113664 Sep 24 2020 date + -rwxr-xr-x 1 root root 80968 Sep 24 2020 dd + -rwxr-xr-x 1 root root 93936 Sep 24 2020 df + -rwxr-xr-x 1 root root 147176 Sep 24 2020 dir + -rwxr-xr-x 1 root root 84440 Jul 29 2021 dmesg + lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname + -rwxr-xr-x 1 root root 39712 Sep 24 2020 echo + -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep + -rwxr-xr-x 1 root root 39680 Sep 24 2020 false + -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep + -rwxr-xr-x 1 root root 69032 Jul 29 2021 findmnt + -rwsr-xr-x 1 root root 34896 Feb 27 2021 fusermount + -rwxr-xr-x 1 root root 203072 Nov 10 2020 grep + -rwxr-xr-x 2 root root 2346 Mar 3 2021 gunzip + -rwxr-xr-x 1 root root 6376 Mar 3 2021 gzexe + -rwxr-xr-x 1 root root 98048 Mar 3 2021 gzip + -rwxr-xr-x 1 root root 22600 Nov 8 2019 hostname + -rwxr-xr-x 1 root root 72840 Sep 24 2020 ln + -rwxr-xr-x 1 root root 56952 Feb 8 2020 login + -rwxr-xr-x 1 root root 147176 Sep 24 2020 ls + -rwxr-xr-x 1 root root 149736 Jul 29 2021 lsblk + -rwxr-xr-x 1 root root 85184 Sep 24 2020 mkdir + -rwxr-xr-x 1 root root 76896 Sep 24 2020 mknod + -rwxr-xr-x 1 root root 48064 Sep 24 2020 mktemp + -rwxr-xr-x 1 root root 59632 Jul 29 2021 more + -rwsr-xr-x 1 root root 55528 Jul 29 2021 mount + -rwxr-xr-x 1 root root 18664 Jul 29 2021 mountpoint + -rwxr-xr-x 1 root root 147080 Sep 24 2020 mv + lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 19 2021 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 43872 Sep 24 2020 pwd + lrwxrwxrwx 1 root root 4 Aug 5 2021 rbash -> bash + -rwxr-xr-x 1 root root 52032 Sep 24 2020 readlink + -rwxr-xr-x 1 root root 72704 Sep 24 2020 rm + -rwxr-xr-x 1 root root 52032 Sep 24 2020 rmdir + -rwxr-xr-x 1 root root 27472 Sep 28 2020 run-parts + -rwxr-xr-x 1 root root 122224 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Feb 2 22:05 sh -> bash + lrwxrwxrwx 1 root root 4 Jan 24 05:47 sh.distrib -> dash + -rwxr-xr-x 1 root root 43808 Sep 24 2020 sleep + -rwxr-xr-x 1 root root 84928 Sep 24 2020 stty + -rwsr-xr-x 1 root root 71912 Jul 29 2021 su + -rwxr-xr-x 1 root root 39744 Sep 24 2020 sync + -rwxr-xr-x 1 root root 531928 Feb 17 2021 tar + -rwxr-xr-x 1 root root 14456 Sep 28 2020 tempfile + -rwxr-xr-x 1 root root 101408 Sep 24 2020 touch + -rwxr-xr-x 1 root root 39680 Sep 24 2020 true + -rwxr-xr-x 1 root root 14328 Feb 27 2021 ulockmgr_server + -rwsr-xr-x 1 root root 35040 Jul 29 2021 umount + -rwxr-xr-x 1 root root 39744 Sep 24 2020 uname + -rwxr-xr-x 2 root root 2346 Mar 3 2021 uncompress + -rwxr-xr-x 1 root root 147176 Sep 24 2020 vdir + -rwxr-xr-x 1 root root 63744 Jul 29 2021 wdctl + lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Mar 3 2021 zcat + -rwxr-xr-x 1 root root 1678 Mar 3 2021 zcmp + -rwxr-xr-x 1 root root 5880 Mar 3 2021 zdiff + -rwxr-xr-x 1 root root 29 Mar 3 2021 zegrep + -rwxr-xr-x 1 root root 29 Mar 3 2021 zfgrep + -rwxr-xr-x 1 root root 2081 Mar 3 2021 zforce + -rwxr-xr-x 1 root root 7585 Mar 3 2021 zgrep + -rwxr-xr-x 1 root root 2206 Mar 3 2021 zless + -rwxr-xr-x 1 root root 1842 Mar 3 2021 zmore + -rwxr-xr-x 1 root root 4553 Mar 3 2021 znew +I: user script /srv/workspace/pbuilder/1980787/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -344,7 +378,7 @@ Get: 125 http://deb.debian.org/debian bullseye/main amd64 liblapack-dev amd64 3.9.0-3 [4247 kB] Get: 126 http://deb.debian.org/debian bullseye/main amd64 libsqlite3-dev amd64 3.34.1-3 [963 kB] Get: 127 http://deb.debian.org/debian bullseye/main amd64 uuid-dev amd64 2.36.1-8 [99.2 kB] -Fetched 148 MB in 17s (8763 kB/s) +Fetched 148 MB in 2s (62.9 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19655 files and directories currently installed.) @@ -873,7 +907,8 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/plastimatch-1.9.3+dfsg.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../plastimatch_1.9.3+dfsg.1-1_source.changes +hostname: Name or service not known +I: Running cd /build/plastimatch-1.9.3+dfsg.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../plastimatch_1.9.3+dfsg.1-1_source.changes dpkg-buildpackage: info: source package plastimatch dpkg-buildpackage: info: source version 1.9.3+dfsg.1-1 dpkg-buildpackage: info: source distribution unstable @@ -1137,7 +1172,7 @@ -- Build files have been written to: /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1' dh_auto_build - cd obj-x86_64-linux-gnu && make -j15 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-x86_64-linux-gnu && make -j16 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/plastimatch-1.9.3+dfsg.1 -B/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/CMakeFiles /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu//CMakeFiles/progress.marks @@ -1162,64 +1197,64 @@ make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys/CMakeFiles/plmsys.dir/DependInfo.cmake --color= make -f src/plastimatch/clp/CMakeFiles/plmclp.dir/build.make src/plastimatch/clp/CMakeFiles/plmclp.dir/depend -make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/clp /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/clp/CMakeFiles/plmclp.dir/DependInfo.cmake --color= Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/DependInfo.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/depend.internal". 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Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/inih-r29/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/inih-r29/CMakeFiles/inih.dir/depend.internal". -Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/clp/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/clp/CMakeFiles/plmclp.dir/depend.internal". +make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' +Scanning dependencies of target inih +make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/nkidecompress/CMakeFiles/nkidecompress.dir/DependInfo.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/nkidecompress/CMakeFiles/nkidecompress.dir/depend.internal". Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/nkidecompress/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/nkidecompress/CMakeFiles/nkidecompress.dir/depend.internal". -Scanning dependencies of target specfun -Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys/CMakeFiles/plmsys.dir/DependInfo.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys/CMakeFiles/plmsys.dir/depend.internal". -Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys/CMakeFiles/plmsys.dir/depend.internal". +make -f libs/inih-r29/CMakeFiles/inih.dir/build.make libs/inih-r29/CMakeFiles/inih.dir/build +Scanning dependencies of target nkidecompress +make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' make -f libs/specfun/CMakeFiles/specfun.dir/build.make libs/specfun/CMakeFiles/specfun.dir/build +Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys/CMakeFiles/plmsys.dir/DependInfo.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys/CMakeFiles/plmsys.dir/depend.internal". +Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys/CMakeFiles/plmsys.dir/depend.internal". +make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' +make -f libs/nkidecompress/CMakeFiles/nkidecompress.dir/build.make libs/nkidecompress/CMakeFiles/nkidecompress.dir/build +Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/clp/CMakeFiles/plmclp.dir/DependInfo.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/clp/CMakeFiles/plmclp.dir/depend.internal". +Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/clp/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/clp/CMakeFiles/plmclp.dir/depend.internal". make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' Scanning dependencies of target plmclp +[ 0%] Building C object libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/lib/lbfgs.c.o make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' +Scanning dependencies of target plmsys make -f src/plastimatch/clp/CMakeFiles/plmclp.dir/build.make src/plastimatch/clp/CMakeFiles/plmclp.dir/build -Scanning dependencies of target nkidecompress -Scanning dependencies of target inih -make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -make -f libs/inih-r29/CMakeFiles/inih.dir/build.make libs/inih-r29/CMakeFiles/inih.dir/build -make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -Scanning dependencies of target lbfgs +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 && /usr/bin/cc -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -o CMakeFiles/lbfgs.dir/lib/lbfgs.c.o -c /build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/lib/lbfgs.c make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -make -f libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/build.make libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/build -make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -make -f libs/nkidecompress/CMakeFiles/nkidecompress.dir/build.make libs/nkidecompress/CMakeFiles/nkidecompress.dir/build -[ 0%] Building CXX object libs/devillard/CMakeFiles/devillard.dir/wirth.cpp.o -make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/devillard && /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -std=gnu++11 -o CMakeFiles/devillard.dir/wirth.cpp.o -c /build/plastimatch-1.9.3+dfsg.1/libs/devillard/wirth.cpp -[ 0%] Building CXX object src/plastimatch/clp/CMakeFiles/plmclp.dir/plm_clp.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/clp && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/gdcm-3.0 -I/usr/include/ITK-4.13 -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -std=gnu++11 -o CMakeFiles/plmclp.dir/plm_clp.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp/plm_clp.cxx +[ 1%] Building CXX object libs/devillard/CMakeFiles/devillard.dir/wirth.cpp.o [ 1%] Building C object libs/inih-r29/CMakeFiles/inih.dir/ini.c.o +make -f src/plastimatch/sys/CMakeFiles/plmsys.dir/build.make src/plastimatch/sys/CMakeFiles/plmsys.dir/build [ 1%] Building C object libs/specfun/CMakeFiles/specfun.dir/mpbdv.c.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/inih-r29 && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -o CMakeFiles/inih.dir/ini.c.o -c /build/plastimatch-1.9.3+dfsg.1/libs/inih-r29/ini.c cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/specfun && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -o CMakeFiles/specfun.dir/mpbdv.c.o -c /build/plastimatch-1.9.3+dfsg.1/libs/specfun/mpbdv.c [ 1%] Building CXX object libs/nkidecompress/CMakeFiles/nkidecompress.dir/nkidecompress.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/nkidecompress && /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -std=gnu++11 -o CMakeFiles/nkidecompress.dir/nkidecompress.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress/nkidecompress.cxx +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/inih-r29 && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -o CMakeFiles/inih.dir/ini.c.o -c /build/plastimatch-1.9.3+dfsg.1/libs/inih-r29/ini.c +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/devillard && /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -std=gnu++11 -o CMakeFiles/devillard.dir/wirth.cpp.o -c /build/plastimatch-1.9.3+dfsg.1/libs/devillard/wirth.cpp +make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' [ 1%] Building CXX object libs/inih-r29/CMakeFiles/inih.dir/INIReader.cpp.o -[ 1%] Building C object libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/lib/lbfgs.c.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 && /usr/bin/cc -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -o CMakeFiles/lbfgs.dir/lib/lbfgs.c.o -c /build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/lib/lbfgs.c cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/inih-r29 && /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -std=gnu++11 -o CMakeFiles/inih.dir/INIReader.cpp.o -c /build/plastimatch-1.9.3+dfsg.1/libs/inih-r29/INIReader.cpp -Scanning dependencies of target plmsys -make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -make -f src/plastimatch/sys/CMakeFiles/plmsys.dir/build.make src/plastimatch/sys/CMakeFiles/plmsys.dir/build -make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' +[ 1%] Building CXX object src/plastimatch/clp/CMakeFiles/plmclp.dir/plm_clp.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/clp && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/gdcm-3.0 -I/usr/include/ITK-4.13 -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -std=gnu++11 -o CMakeFiles/plmclp.dir/plm_clp.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp/plm_clp.cxx [ 1%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/dir_list.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/gdcm-3.0 -I/usr/include/ITK-4.13 -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsys.dir/dir_list.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys/dir_list.cxx [ 1%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/dlib_threads.cxx.o @@ -1227,42 +1262,42 @@ [ 2%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/file_util.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/gdcm-3.0 -I/usr/include/ITK-4.13 -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsys.dir/file_util.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys/file_util.cxx [ 2%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/logfile.cxx.o -[ 2%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/option_range.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/gdcm-3.0 -I/usr/include/ITK-4.13 -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsys.dir/logfile.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys/logfile.cxx [ 2%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/path_util.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/gdcm-3.0 -I/usr/include/ITK-4.13 -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsys.dir/option_range.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys/option_range.cxx +[ 2%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/option_range.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/gdcm-3.0 -I/usr/include/ITK-4.13 -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsys.dir/path_util.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys/path_util.cxx +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/gdcm-3.0 -I/usr/include/ITK-4.13 -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsys.dir/option_range.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys/option_range.cxx [ 3%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/plm_endian.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/gdcm-3.0 -I/usr/include/ITK-4.13 -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsys.dir/plm_endian.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys/plm_endian.cxx [ 3%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/plm_fwrite.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/gdcm-3.0 -I/usr/include/ITK-4.13 -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsys.dir/plm_fwrite.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys/plm_fwrite.cxx [ 3%] Linking CXX static library ../../libdevillard.a cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/devillard && /usr/bin/cmake -P CMakeFiles/devillard.dir/cmake_clean_target.cmake +[ 3%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/plm_sleep.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/gdcm-3.0 -I/usr/include/ITK-4.13 -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsys.dir/plm_sleep.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys/plm_sleep.cxx cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/devillard && /usr/bin/cmake -E cmake_link_script CMakeFiles/devillard.dir/link.txt --verbose=1 /usr/bin/ar qc ../../libdevillard.a CMakeFiles/devillard.dir/wirth.cpp.o +[ 3%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/plm_timer.cxx.o /usr/bin/ranlib ../../libdevillard.a +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/gdcm-3.0 -I/usr/include/ITK-4.13 -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsys.dir/plm_timer.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys/plm_timer.cxx make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -[ 3%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/plm_sleep.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/gdcm-3.0 -I/usr/include/ITK-4.13 -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsys.dir/plm_sleep.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys/plm_sleep.cxx [ 3%] Built target devillard -[ 3%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/plm_timer.cxx.o [ 4%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/print_and_exit.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/gdcm-3.0 -I/usr/include/ITK-4.13 -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsys.dir/plm_timer.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys/plm_timer.cxx cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/gdcm-3.0 -I/usr/include/ITK-4.13 -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsys.dir/print_and_exit.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys/print_and_exit.cxx [ 4%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/string_util.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/gdcm-3.0 -I/usr/include/ITK-4.13 -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsys.dir/string_util.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys/string_util.cxx -[ 4%] Linking CXX static library ../../libnkidecompress.a -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/nkidecompress && /usr/bin/cmake -P CMakeFiles/nkidecompress.dir/cmake_clean_target.cmake [ 4%] Building C object src/plastimatch/sys/CMakeFiles/plmsys.dir/delayload_legacy.c.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/cc -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/gdcm-3.0 -I/usr/include/ITK-4.13 -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -o CMakeFiles/plmsys.dir/delayload_legacy.c.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys/delayload_legacy.c +[ 4%] Linking CXX static library ../../libnkidecompress.a +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/nkidecompress && /usr/bin/cmake -P CMakeFiles/nkidecompress.dir/cmake_clean_target.cmake cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/nkidecompress && /usr/bin/cmake -E cmake_link_script CMakeFiles/nkidecompress.dir/link.txt --verbose=1 /usr/bin/ar qc ../../libnkidecompress.a CMakeFiles/nkidecompress.dir/nkidecompress.cxx.o -[ 4%] Linking C static library ../../libspecfun.a -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/specfun && /usr/bin/cmake -P CMakeFiles/specfun.dir/cmake_clean_target.cmake /usr/bin/ranlib ../../libnkidecompress.a make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/specfun && /usr/bin/cmake -E cmake_link_script CMakeFiles/specfun.dir/link.txt --verbose=1 +[ 4%] Linking C static library ../../libspecfun.a +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/specfun && /usr/bin/cmake -P CMakeFiles/specfun.dir/cmake_clean_target.cmake [ 4%] Built target nkidecompress +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/specfun && /usr/bin/cmake -E cmake_link_script CMakeFiles/specfun.dir/link.txt --verbose=1 /usr/bin/ar qc ../../libspecfun.a CMakeFiles/specfun.dir/mpbdv.c.o /usr/bin/ranlib ../../libspecfun.a make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' @@ -1307,29 +1342,29 @@ cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/aperture.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/aperture.cxx [ 4%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/beam_geometry.cxx.o [ 5%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/astroid_dose.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/astroid_dose.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/astroid_dose.cxx cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/beam_geometry.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/beam_geometry.cxx [ 5%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_header.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/astroid_dose.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/astroid_dose.cxx -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/bspline_header.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/bspline_header.cxx -[ 5%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_warp.cxx.o [ 6%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_interpolate.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/bspline_header.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/bspline_header.cxx +[ 6%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_warp.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/bspline_interpolate.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/bspline_interpolate.cxx cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -fopenmp -msse2 -o CMakeFiles/plmbase.dir/bspline_warp.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/bspline_warp.cxx -[ 6%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_xform_legacy.cxx.o [ 6%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_xform.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/bspline_xform_legacy.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/bspline_xform_legacy.cxx cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/bspline_xform.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/bspline_xform.cxx +[ 6%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_xform_legacy.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/bspline_xform_legacy.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/bspline_xform_legacy.cxx [ 7%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/cxt_extract.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/cxt_extract.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/cxt_extract.cxx [ 7%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/cxt_io.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/cxt_extract.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/cxt_extract.cxx cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/cxt_io.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/cxt_io.cxx [ 7%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dicom_probe.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/dicom_probe.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/dicom_probe.cxx [ 7%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dicom_util.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/dicom_util.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/dicom_util.cxx [ 8%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/direction_cosines.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/direction_cosines.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/direction_cosines.cxx [ 8%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/direction_matrices.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/direction_cosines.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/direction_cosines.cxx cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/direction_matrices.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/direction_matrices.cxx [ 8%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/exchkeys.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/exchkeys.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/exchkeys.cxx @@ -1413,12 +1448,12 @@ cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/parameter_parser.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/parameter_parser.cxx [ 19%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/plm_file_format.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/plm_file_format.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/plm_file_format.cxx +[ 19%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/plm_image.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/plm_image.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/plm_image.cxx /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/plm_file_format.cxx: In function 'Plm_file_format plm_file_format_deduce(const char*)': /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/plm_file_format.cxx:97:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 97 | fgets (line, MAX_LINE, fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ -[ 19%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/plm_image.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/plm_image.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/plm_image.cxx [ 19%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/plm_image_convert.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/plm_image_convert.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/plm_image_convert.cxx [ 19%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/plm_image_header.cxx.o @@ -1461,8 +1496,6 @@ cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/pwlut.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/pwlut.cxx [ 22%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rasterize_slice.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/rasterize_slice.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/rasterize_slice.cxx -[ 23%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rasterizer.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/rasterizer.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/rasterizer.cxx /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/proj_volume.cxx: In member function 'void Proj_volume::save_header(const char*)': /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/proj_volume.cxx:299:30: warning: format '%d' expects argument of type 'int', but argument 3 has type 'plm_long' {aka 'long int'} [-Wformat=] 299 | fprintf (fp, "num_steps=%d\n", d_ptr->num_steps); @@ -1490,10 +1523,10 @@ | ~~~~~~~~~~~~~~~~~~~ | | | plm_long {aka long int} +[ 23%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rasterizer.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/rasterizer.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/rasterizer.cxx [ 23%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/raw_pointset.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/raw_pointset.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/raw_pointset.cxx -[ 23%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/ray_trace_probe.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/ray_trace_probe.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/ray_trace_probe.cxx /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/raw_pointset.cxx: In function 'Raw_pointset* pointset_load_fcsv(const char*)': /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/raw_pointset.cxx:81:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 81 | fgets (s, 1024, fp); @@ -1502,6 +1535,8 @@ /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/raw_pointset.cxx:135:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 135 | fgets (s, 1024, fp); | ~~~~~~^~~~~~~~~~~~~ +[ 23%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/ray_trace_probe.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/ray_trace_probe.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/ray_trace_probe.cxx [ 23%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/ray_trace_uniform.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/ray_trace_uniform.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/ray_trace_uniform.cxx [ 24%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rpl_volume.cxx.o @@ -1593,6 +1628,10 @@ cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/xform_point.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xform_point.cxx [ 33%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_ct.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/xio_ct.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xio_ct.cxx +[ 34%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_ct_transform.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/xio_ct_transform.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xio_ct_transform.cxx +[ 34%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_demographic.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/xio_demographic.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xio_demographic.cxx /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xform_legacy.cxx: In function 'void xform_legacy_save_itk_bsp(itk::BSplineDeformableTransform::Pointer, const char*)': /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xform_legacy.cxx:230:33: warning: format '%d' expects argument of type 'int', but argument 2 has type 'itk::Transform::NumberOfParametersType' {aka 'long unsigned int'} [-Wformat=] 230 | printf (" # of parameters=%d\n", transform->GetBulkTransform()->GetNumberOfParameters()); @@ -1625,10 +1664,6 @@ /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xform_legacy.cxx:168:7: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 168 | fgets(buf,1024,fp); | ~~~~~^~~~~~~~~~~~~ -[ 34%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_ct_transform.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/xio_ct_transform.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xio_ct_transform.cxx -[ 34%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_demographic.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/xio_demographic.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xio_demographic.cxx [ 34%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_dir.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/xio_dir.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xio_dir.cxx [ 34%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_dose.cxx.o @@ -1647,14 +1682,6 @@ cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/dcmtk_file.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/dcmtk_file.cxx [ 36%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_image.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/dcmtk_image.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/dcmtk_image.cxx -[ 36%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_metadata.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/dcmtk_metadata.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/dcmtk_metadata.cxx -[ 37%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_module.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/dcmtk_module.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/dcmtk_module.cxx -[ 37%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rdd.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/dcmtk_rdd.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/dcmtk_rdd.cxx -[ 37%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rtdose.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/dcmtk_rtdose.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/dcmtk_rtdose.cxx /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xio_dose.cxx: In function 'void xio_dose_load_header(Xio_dose_header*, const char*)': /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xio_dose.cxx:73:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 73 | fgets (line1, sizeof(line1), fp); @@ -1683,10 +1710,8 @@ /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xio_dose.cxx:135:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 135 | fgets (line1, sizeof(line1), fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 38%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rtplan.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/dcmtk_rtplan.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/dcmtk_rtplan.cxx -[ 38%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rtss.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/dcmtk_rtss.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/dcmtk_rtss.cxx +[ 36%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_metadata.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/dcmtk_metadata.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/dcmtk_metadata.cxx /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xio_structures.cxx: In function 'void add_cms_structure(Rtss*, const Xio_studyset&, const char*, float)': /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xio_structures.cxx:120:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 120 | fgets (buf, 1024, fp); @@ -1712,6 +1737,16 @@ /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xio_structures.cxx:180:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 180 | fgets (buf, 1024, fp); | ~~~~~~^~~~~~~~~~~~~~~ +[ 37%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_module.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/dcmtk_module.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/dcmtk_module.cxx +[ 37%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rdd.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/dcmtk_rdd.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/dcmtk_rdd.cxx +[ 37%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rtdose.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/dcmtk_rtdose.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/dcmtk_rtdose.cxx +[ 37%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rtss.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/dcmtk_rtss.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/dcmtk_rtss.cxx +[ 38%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rtplan.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/dcmtk_rtplan.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/dcmtk_rtplan.cxx [ 38%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rt_study.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/dcmtk_rt_study.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/dcmtk_rt_study.cxx [ 38%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rt_study_p.cxx.o @@ -1720,10 +1755,6 @@ cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/dcmtk_series.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/dcmtk_series.cxx [ 39%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_sro.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/dcmtk_sro.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/dcmtk_sro.cxx -[ 39%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_uid.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/dcmtk_uid.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/dcmtk_uid.cxx -[ 39%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_util.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/dcmtk_util.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/dcmtk_util.cxx /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/dcmtk_rtplan.cxx: In member function 'void Dcmtk_rt_study::rt_ion_plan_load()': /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/dcmtk_rtplan.cxx:101:30: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long unsigned int' [-Wformat=] 101 | printf (">> Num beams = %d\n", num_beams); @@ -1743,6 +1774,10 @@ | | | | int long int | %ld +[ 39%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_uid.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/dcmtk_uid.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/dcmtk_uid.cxx +[ 39%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_util.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/dcmtk_util.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/dcmtk_util.cxx [ 40%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/ray_trace_exact.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/ray_trace_exact.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/ray_trace_exact.cxx [ 40%] Linking CXX shared library ../../../libplmbase.so @@ -1760,36 +1795,36 @@ make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/util/CMakeFiles/plmutil.dir/build.make src/plastimatch/util/CMakeFiles/plmutil.dir/build make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -[ 40%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/dice_statistics.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -fopenmp -o CMakeFiles/plmutil.dir/dice_statistics.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/dice_statistics.cxx -[ 41%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/diff.cxx.o +[ 41%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/bspline_correspond.cxx.o +[ 41%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/dvh.cxx.o +[ 41%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/distance_map.cxx.o [ 41%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/dicom_sro_save.cxx.o -[ 42%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/bspline_correspond.cxx.o +[ 42%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/diff.cxx.o +[ 42%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/dice_statistics.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/bspline_correspond.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/bspline_correspond.cxx -[ 42%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/distance_map.cxx.o -[ 42%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/gamma_dose_comparison.cxx.o +[ 43%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_adjust.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -fopenmp -o CMakeFiles/plmutil.dir/dice_statistics.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/dice_statistics.cxx +[ 43%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_distance_map.cxx.o +[ 43%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/gamma_dose_comparison.cxx.o +[ 43%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/image_boundary.cxx.o +[ 43%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/hausdorff_distance.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/dicom_sro_save.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/dicom_sro_save.cxx -[ 42%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/dvh.cxx.o -[ 42%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/hausdorff_distance.cxx.o +[ 43%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/image_center.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -fopenmp -o CMakeFiles/plmutil.dir/distance_map.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/distance_map.cxx cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/diff.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/diff.cxx cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/dvh.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/dvh.cxx cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/gamma_dose_comparison.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/gamma_dose_comparison.cxx cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/hausdorff_distance.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/hausdorff_distance.cxx -[ 43%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/geometry_chooser.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/geometry_chooser.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/geometry_chooser.cxx -[ 43%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/image_boundary.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/image_boundary.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/image_boundary.cxx -[ 43%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/image_center.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -fopenmp -o CMakeFiles/plmutil.dir/image_center.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/image_center.cxx -[ 44%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_adjust.cxx.o -[ 44%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_crop.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/itk_adjust.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/itk_adjust.cxx -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/itk_crop.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/itk_crop.cxx -[ 44%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_distance_map.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/itk_distance_map.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/itk_distance_map.cxx -[ 44%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_gabor.cxx.o +[ 43%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_gabor.cxx.o +[ 43%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_crop.cxx.o +[ 44%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/geometry_chooser.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/itk_gabor.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/itk_gabor.cxx +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/geometry_chooser.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/geometry_chooser.cxx +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/itk_crop.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/itk_crop.cxx [ 45%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_histogram_matching.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/itk_histogram_matching.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/itk_histogram_matching.cxx [ 45%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_intersect.cxx.o @@ -1861,17 +1896,17 @@ make -f src/plastimatch/dose/CMakeFiles/plmdose.dir/build.make src/plastimatch/dose/CMakeFiles/plmdose.dir/depend make -f src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/build.make src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/depend make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register/CMakeFiles/plmregister.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose/CMakeFiles/plmdose.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register/CMakeFiles/plmregister.dir/DependInfo.cmake --color= +Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose/CMakeFiles/plmdose.dir/DependInfo.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose/CMakeFiles/plmdose.dir/depend.internal". +Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose/CMakeFiles/plmdose.dir/depend.internal". Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register/CMakeFiles/plmregister.dir/DependInfo.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register/CMakeFiles/plmregister.dir/depend.internal". Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register/CMakeFiles/plmregister.dir/depend.internal". Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/DependInfo.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/depend.internal". Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/depend.internal". -Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose/CMakeFiles/plmdose.dir/DependInfo.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose/CMakeFiles/plmdose.dir/depend.internal". -Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose/CMakeFiles/plmdose.dir/depend.internal". Scanning dependencies of target plmreconstruct make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/build.make src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/build @@ -1879,30 +1914,30 @@ [ 51%] Building CXX object src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/bowtie_correction.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmreconstruct_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmreconstruct.dir/bowtie_correction.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/bowtie_correction.cxx [ 52%] Building CXX object src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/drr_options.cxx.o -[ 52%] Building CXX object src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/drr.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmreconstruct_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -fopenmp -o CMakeFiles/plmreconstruct.dir/drr.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/drr.cxx cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmreconstruct_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmreconstruct.dir/drr_options.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/drr_options.cxx -[ 52%] Building CXX object src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/drr_trilin.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmreconstruct_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmreconstruct.dir/drr_trilin.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/drr_trilin.cxx +[ 52%] Building CXX object src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/drr.cxx.o [ 52%] Building CXX object src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/fdk.cxx.o +[ 52%] Building CXX object src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/drr_trilin.cxx.o [ 52%] Building CXX object src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/fdk_util.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmreconstruct_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -fopenmp -o CMakeFiles/plmreconstruct.dir/drr.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/drr.cxx +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmreconstruct_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmreconstruct.dir/drr_trilin.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/drr_trilin.cxx cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmreconstruct_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -fopenmp -o CMakeFiles/plmreconstruct.dir/fdk.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/fdk.cxx cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmreconstruct_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmreconstruct.dir/fdk_util.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/fdk_util.cxx Scanning dependencies of target plmdose make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/dose/CMakeFiles/plmdose.dir/build.make src/plastimatch/dose/CMakeFiles/plmdose.dir/build make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' +[ 52%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/beam_map.cxx.o [ 53%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/beam_calc.cxx.o +[ 54%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/dose_volume_functions.cxx.o +[ 54%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/compute_dose.cxx.o +[ 54%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/bragg_curve.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmdose.dir/beam_calc.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/beam_calc.cxx -[ 53%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/bragg_curve.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmdose.dir/bragg_curve.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/bragg_curve.cxx -[ 53%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/beam_map.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmdose.dir/beam_map.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/beam_map.cxx -[ 53%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/compute_dose.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmdose.dir/bragg_curve.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/bragg_curve.cxx cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmdose.dir/compute_dose.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/compute_dose.cxx -[ 53%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/particle_type.cxx.o -[ 54%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/dose_volume_functions.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmdose.dir/dose_volume_functions.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/dose_volume_functions.cxx +[ 54%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/particle_type.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmdose.dir/particle_type.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/particle_type.cxx [ 54%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_beam_model.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmdose.dir/rt_beam_model.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/rt_beam_model.cxx @@ -1935,38 +1970,29 @@ 125 | fgets (linebuf, 128, fp); | ~~~~~~^~~~~~~~~~~~~~~~~~ [ 55%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_mebs.cxx.o -[ 56%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_parms.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmdose.dir/rt_mebs.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/rt_mebs.cxx +Scanning dependencies of target plmregister +make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' +make -f src/plastimatch/register/CMakeFiles/plmregister.dir/build.make src/plastimatch/register/CMakeFiles/plmregister.dir/build +[ 56%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_parms.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmdose.dir/rt_parms.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/rt_parms.cxx [ 56%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/plan_calc.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmdose.dir/plan_calc.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/plan_calc.cxx +make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' +[ 56%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -fopenmp -msse2 -o CMakeFiles/plmregister.dir/bspline.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/bspline.cxx [ 56%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_sigma.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmdose.dir/rt_sigma.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/rt_sigma.cxx [ 57%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/wed_parms.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmdose.dir/wed_parms.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/wed_parms.cxx -Scanning dependencies of target plmregister -make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -make -f src/plastimatch/register/CMakeFiles/plmregister.dir/build.make src/plastimatch/register/CMakeFiles/plmregister.dir/build -make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -[ 57%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -fopenmp -msse2 -o CMakeFiles/plmregister.dir/bspline.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/bspline.cxx [ 57%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_landmarks.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/bspline_landmarks.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/bspline_landmarks.cxx [ 57%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_gm.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -fopenmp -msse2 -o CMakeFiles/plmregister.dir/bspline_gm.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/bspline_gm.cxx -/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/rt_dij.cxx: In member function 'void Rt_dij::dump(const string&) const': -/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/rt_dij.cxx:51:28: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long unsigned int' [-Wformat=] - 51 | fprintf (fp, "%d %f\n", c->index, c->dose); - | ~^ ~~~~~~~~ - | | | - | int long unsigned int - | %ld -/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/beam_calc.cxx: In member function 'bool Beam_calc::load(const char*)': -/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/beam_calc.cxx:194:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 194 | fgets (linebuf, 128, fp); - | ~~~~~~^~~~~~~~~~~~~~~~~~ [ 58%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_mi.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -fopenmp -msse2 -o CMakeFiles/plmregister.dir/bspline_mi.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/bspline_mi.cxx +[ 58%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_mse.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -fopenmp -msse2 -o CMakeFiles/plmregister.dir/bspline_mse.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/bspline_mse.cxx /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/wed_parms.cxx: In member function 'int Wed_parms::set_key_val(const char*, const char*, int)': /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/wed_parms.cxx:237:32: warning: format '%i' expects argument of type 'int*', but argument 3 has type 'plm_long*' {aka 'long int*'} [-Wformat=] 237 | if (sscanf (val, "%i %i", @@ -1989,11 +2015,17 @@ | ~~~~~~~~~~~~~~~~ | | | plm_long* {aka long int*} -[ 58%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_mse.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -fopenmp -msse2 -o CMakeFiles/plmregister.dir/bspline_mse.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/bspline_mse.cxx -[ 59%] Linking CXX shared library ../../../libplmreconstruct.so -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct && /usr/bin/cmake -E cmake_link_script CMakeFiles/plmreconstruct.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -shared -Wl,-soname,libplmreconstruct.so.1.9 -o ../../../libplmreconstruct.so.1.9 CMakeFiles/plmreconstruct.dir/bowtie_correction.cxx.o CMakeFiles/plmreconstruct.dir/drr.cxx.o CMakeFiles/plmreconstruct.dir/drr_options.cxx.o CMakeFiles/plmreconstruct.dir/drr_trilin.cxx.o CMakeFiles/plmreconstruct.dir/fdk.cxx.o CMakeFiles/plmreconstruct.dir/fdk_util.cxx.o -L/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -L/usr/include ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 /usr/lib/x86_64-linux-gnu/libdouble-conversion.so.3.1 /usr/lib/x86_64-linux-gnu/libi2d.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg8.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg12.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg16.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libcharls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libcmr.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmtls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmsr.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmimage.so.15.3.6.5 -ltiff -lxml2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.15.3.6.5 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmnet.so.15.3.6.5 -lwrap /usr/lib/x86_64-linux-gnu/libdcmrt.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmimgle.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmseg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmtract.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmfg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmiod.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmdata.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/liboflog.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libofstd.so.15.3.6.5 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.8 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKFFT-4.13.so.1 -lfftw3_threads -lfftw3f_threads /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -lm ../../../libnkidecompress.a -lpthread -ldl /usr/lib/x86_64-linux-gnu/libdlib.so.19.10.0 -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 -lfftw3f -lfftw3 ../../../libdevillard.a +/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/beam_calc.cxx: In member function 'bool Beam_calc::load(const char*)': +/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/beam_calc.cxx:194:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 194 | fgets (linebuf, 128, fp); + | ~~~~~~^~~~~~~~~~~~~~~~~~ +/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/rt_dij.cxx: In member function 'void Rt_dij::dump(const string&) const': +/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/rt_dij.cxx:51:28: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long unsigned int' [-Wformat=] + 51 | fprintf (fp, "%d %f\n", c->index, c->dose); + | ~^ ~~~~~~~~ + | | | + | int long unsigned int + | %ld /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/rt_mebs.cxx: In member function 'void Rt_mebs::load_beamlet_map(Aperture::Pointer&)': /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/rt_mebs.cxx:1129:52: warning: format '%d' expects argument of type 'int', but argument 2 has type 'plm_long' {aka 'long int'} [-Wformat=] 1129 | printf("beamlet line number expected: %d, beamlet line detected: %d.\n", ap->get_dim(1), line_number); @@ -2033,18 +2065,14 @@ | | | | int plm_long {aka long int} | %ld +[ 59%] Linking CXX shared library ../../../libplmreconstruct.so +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct && /usr/bin/cmake -E cmake_link_script CMakeFiles/plmreconstruct.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -shared -Wl,-soname,libplmreconstruct.so.1.9 -o ../../../libplmreconstruct.so.1.9 CMakeFiles/plmreconstruct.dir/bowtie_correction.cxx.o CMakeFiles/plmreconstruct.dir/drr.cxx.o CMakeFiles/plmreconstruct.dir/drr_options.cxx.o CMakeFiles/plmreconstruct.dir/drr_trilin.cxx.o CMakeFiles/plmreconstruct.dir/fdk.cxx.o CMakeFiles/plmreconstruct.dir/fdk_util.cxx.o -L/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -L/usr/include ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 /usr/lib/x86_64-linux-gnu/libdouble-conversion.so.3.1 /usr/lib/x86_64-linux-gnu/libi2d.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg8.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg12.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg16.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libcharls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libcmr.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmtls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmsr.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmimage.so.15.3.6.5 -ltiff -lxml2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.15.3.6.5 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmnet.so.15.3.6.5 -lwrap /usr/lib/x86_64-linux-gnu/libdcmrt.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmimgle.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmseg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmtract.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmfg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmiod.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmdata.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/liboflog.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libofstd.so.15.3.6.5 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.8 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKFFT-4.13.so.1 -lfftw3_threads -lfftw3f_threads /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -lm ../../../libnkidecompress.a -lpthread -ldl /usr/lib/x86_64-linux-gnu/libdlib.so.19.10.0 -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 -lfftw3f -lfftw3 ../../../libdevillard.a [ 59%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/bspline_optimize.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/bspline_optimize.cxx [ 59%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize_lbfgsb.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/bspline_optimize_lbfgsb.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/bspline_optimize_lbfgsb.cxx [ 60%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize_liblbfgs.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/bspline_optimize_liblbfgs.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/bspline_optimize_liblbfgs.cxx -[ 60%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize_nlopt.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/bspline_optimize_nlopt.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/bspline_optimize_nlopt.cxx -[ 60%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize_steepest.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/bspline_optimize_steepest.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/bspline_optimize_steepest.cxx -[ 61%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_parms.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/bspline_parms.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/bspline_parms.cxx /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/plan_calc.cxx: In member function 'void Plan_calc::normalize_beam_dose(Beam_calc*)': /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/plan_calc.cxx:424:48: warning: format '%d' expects argument of type 'int', but argument 2 has type 'plm_long' {aka 'long int'} [-Wformat=] 424 | printf("Primary PB num. x, y: %d, %d, primary PB res. x, y: %lg PB/mm, %lg PB/mm\n", beam->get_aperture()->get_dim(0), beam->get_aperture()->get_dim(1), 1.0 / (double) beam->get_aperture()->get_spacing(0), 1.0 / (double) beam->get_aperture()->get_spacing(1)); @@ -2082,6 +2110,7 @@ | | | | int plm_long {aka long int} | %ld +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/bspline_optimize_liblbfgs.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/bspline_optimize_liblbfgs.cxx /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/plan_calc.cxx: In member function 'void Plan_calc::print_verif()': /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/plan_calc.cxx:759:73: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long int' [-Wformat=] 759 | printf("\n i_res: "); for (int i = 0; i < num_beams; i++) {printf("%d %d ** ", d_ptr->beam_storage[i]->get_aperture()->get_dim()[0], d_ptr->beam_storage[i]->get_aperture()->get_dim()[1]);} @@ -2095,6 +2124,12 @@ | | | | int long int | %ld +[ 60%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize_nlopt.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/bspline_optimize_nlopt.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/bspline_optimize_nlopt.cxx +[ 60%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize_steepest.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/bspline_optimize_steepest.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/bspline_optimize_steepest.cxx +[ 61%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_parms.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/bspline_parms.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/bspline_parms.cxx [ 61%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_score.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/bspline_score.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/bspline_score.cxx [ 61%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_stage.cxx.o @@ -2109,9 +2144,9 @@ [ 62%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_regularize_numeric.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/bspline_regularize_numeric.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/bspline_regularize_numeric.cxx make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -[ 62%] Built target plmreconstruct [ 62%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_regularize_semi_analytic.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/bspline_regularize_semi_analytic.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/bspline_regularize_semi_analytic.cxx +[ 62%] Built target plmreconstruct [ 63%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/demons.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/demons.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/demons.cxx [ 63%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/demons_cpu.cxx.o @@ -2138,6 +2173,9 @@ cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/itk_log_demons.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/itk_log_demons.cxx [ 66%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_sym_log_demons.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/itk_sym_log_demons.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/itk_sym_log_demons.cxx +[ 66%] Linking CXX shared library ../../../libplmdose.so +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/cmake -E cmake_link_script CMakeFiles/plmdose.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -shared -Wl,-soname,libplmdose.so.1.9 -o ../../../libplmdose.so.1.9 CMakeFiles/plmdose.dir/beam_calc.cxx.o CMakeFiles/plmdose.dir/beam_map.cxx.o CMakeFiles/plmdose.dir/bragg_curve.cxx.o CMakeFiles/plmdose.dir/compute_dose.cxx.o CMakeFiles/plmdose.dir/dose_volume_functions.cxx.o CMakeFiles/plmdose.dir/particle_type.cxx.o CMakeFiles/plmdose.dir/rt_beam_model.cxx.o CMakeFiles/plmdose.dir/rt_depth_dose.cxx.o CMakeFiles/plmdose.dir/rt_dij.cxx.o CMakeFiles/plmdose.dir/rt_lut.cxx.o CMakeFiles/plmdose.dir/rt_spot_map.cxx.o CMakeFiles/plmdose.dir/rt_mebs.cxx.o CMakeFiles/plmdose.dir/rt_parms.cxx.o CMakeFiles/plmdose.dir/plan_calc.cxx.o CMakeFiles/plmdose.dir/rt_sigma.cxx.o CMakeFiles/plmdose.dir/wed_parms.cxx.o -L/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -L/usr/include ../../../libplmutil.so.1.9 ../../../libspecfun.a ../../../libplmbase.so.1.9 /usr/lib/x86_64-linux-gnu/libdouble-conversion.so.3.1 /usr/lib/x86_64-linux-gnu/libi2d.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg8.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg12.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg16.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libcharls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libcmr.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmtls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmsr.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmimage.so.15.3.6.5 -ltiff -lxml2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.15.3.6.5 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmnet.so.15.3.6.5 -lwrap /usr/lib/x86_64-linux-gnu/libdcmrt.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmimgle.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmseg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmtract.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmfg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmiod.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmdata.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/liboflog.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libofstd.so.15.3.6.5 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.8 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKFFT-4.13.so.1 -lfftw3_threads -lfftw3f_threads /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -lm ../../../libnkidecompress.a ../../../libplmsys.so.1.9 -lpthread -ldl /usr/lib/x86_64-linux-gnu/libdlib.so.19.10.0 -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 -lfftw3f -lfftw3 ../../../libdevillard.a [ 66%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_optimizer.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/itk_optimizer.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/itk_optimizer.cxx [ 66%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_registration.cxx.o @@ -2146,22 +2184,19 @@ cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/itk_registration_observer.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/itk_registration_observer.cxx [ 67%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_tps.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/itk_tps.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/itk_tps.cxx -[ 67%] Linking CXX shared library ../../../libplmdose.so -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/cmake -E cmake_link_script CMakeFiles/plmdose.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -shared -Wl,-soname,libplmdose.so.1.9 -o ../../../libplmdose.so.1.9 CMakeFiles/plmdose.dir/beam_calc.cxx.o CMakeFiles/plmdose.dir/beam_map.cxx.o CMakeFiles/plmdose.dir/bragg_curve.cxx.o CMakeFiles/plmdose.dir/compute_dose.cxx.o CMakeFiles/plmdose.dir/dose_volume_functions.cxx.o CMakeFiles/plmdose.dir/particle_type.cxx.o CMakeFiles/plmdose.dir/rt_beam_model.cxx.o CMakeFiles/plmdose.dir/rt_depth_dose.cxx.o CMakeFiles/plmdose.dir/rt_dij.cxx.o CMakeFiles/plmdose.dir/rt_lut.cxx.o CMakeFiles/plmdose.dir/rt_spot_map.cxx.o CMakeFiles/plmdose.dir/rt_mebs.cxx.o CMakeFiles/plmdose.dir/rt_parms.cxx.o CMakeFiles/plmdose.dir/plan_calc.cxx.o CMakeFiles/plmdose.dir/rt_sigma.cxx.o CMakeFiles/plmdose.dir/wed_parms.cxx.o -L/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -L/usr/include ../../../libplmutil.so.1.9 ../../../libspecfun.a ../../../libplmbase.so.1.9 /usr/lib/x86_64-linux-gnu/libdouble-conversion.so.3.1 /usr/lib/x86_64-linux-gnu/libi2d.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg8.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg12.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg16.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libcharls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libcmr.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmtls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmsr.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmimage.so.15.3.6.5 -ltiff -lxml2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.15.3.6.5 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmnet.so.15.3.6.5 -lwrap /usr/lib/x86_64-linux-gnu/libdcmrt.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmimgle.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmseg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmtract.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmfg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmiod.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmdata.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/liboflog.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libofstd.so.15.3.6.5 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.8 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKFFT-4.13.so.1 -lfftw3_threads -lfftw3f_threads /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -lm ../../../libnkidecompress.a ../../../libplmsys.so.1.9 -lpthread -ldl /usr/lib/x86_64-linux-gnu/libdlib.so.19.10.0 -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 -lfftw3f -lfftw3 ../../../libdevillard.a [ 67%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/joint_histogram.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/joint_histogram.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/joint_histogram.cxx [ 67%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/landmark_warp.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/landmark_warp.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/landmark_warp.cxx [ 68%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/metric_parms.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/metric_parms.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/metric_parms.cxx +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/cmake -E cmake_symlink_library ../../../libplmdose.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmdose.so +make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' +[ 68%] Built target plmdose [ 68%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/metric_state.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/metric_state.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/metric_state.cxx [ 68%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/process_parms.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/process_parms.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/process_parms.cxx -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/cmake -E cmake_symlink_library ../../../libplmdose.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmdose.so -make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -[ 68%] Built target plmdose [ 68%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/rbf_cluster.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/rbf_cluster.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/rbf_cluster.cxx [ 69%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/rbf_gauss.cxx.o @@ -2205,33 +2240,33 @@ make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/segment/CMakeFiles/plmsegment.dir/build.make src/plastimatch/segment/CMakeFiles/plmsegment.dir/build make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' +[ 72%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_parms.cxx.o [ 72%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_ransac_est.cxx.o [ 73%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_feature.cxx.o -[ 73%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_parms.cxx.o [ 73%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel.cxx.o -[ 73%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_task.cxx.o +[ 73%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs.cxx.o +[ 73%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_parms.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsegment.dir/autolabel.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment/autolabel.cxx cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsegment.dir/autolabel_feature.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment/autolabel_feature.cxx cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsegment.dir/autolabel_parms.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment/autolabel_parms.cxx -[ 74%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_thumbnailer.cxx.o -[ 74%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_trainer.cxx.o +[ 73%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_trainer.cxx.o +[ 73%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_task.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsegment.dir/autolabel_ransac_est.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment/autolabel_ransac_est.cxx +[ 74%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_thumbnailer.cxx.o +[ 74%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/dlib_trainer.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsegment.dir/autolabel_task.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment/autolabel_task.cxx -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsegment.dir/autolabel_thumbnailer.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment/autolabel_thumbnailer.cxx cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsegment.dir/autolabel_trainer.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment/autolabel_trainer.cxx -[ 74%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs.cxx.o -[ 74%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/dlib_trainer.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsegment.dir/dlib_trainer.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment/dlib_trainer.cxx [ 75%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_atlas_selection.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsegment.dir/mabs.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment/mabs.cxx +[ 75%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_seg_weights.cxx.o +[ 75%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_stats.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsegment.dir/autolabel_thumbnailer.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment/autolabel_thumbnailer.cxx +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsegment.dir/dlib_trainer.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment/dlib_trainer.cxx cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsegment.dir/mabs_atlas_selection.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment/mabs_atlas_selection.cxx -[ 75%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_parms.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsegment.dir/mabs_parms.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment/mabs_parms.cxx -[ 75%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_stats.cxx.o -[ 75%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_seg_weights.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsegment.dir/mabs_seg_weights.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment/mabs_seg_weights.cxx -[ 76%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_staple.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsegment.dir/mabs_stats.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment/mabs_stats.cxx +[ 76%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_staple.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsegment.dir/mabs_staple.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment/mabs_staple.cxx [ 76%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_vote.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -fopenmp -o CMakeFiles/plmsegment.dir/mabs_vote.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment/mabs_vote.cxx @@ -2248,272 +2283,272 @@ make -f src/plastimatch/cli/CMakeFiles/plastimatch.dir/build.make src/plastimatch/cli/CMakeFiles/plastimatch.dir/depend make -f src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/build.make src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/depend make -f src/plastimatch/standalone/CMakeFiles/compute_distance.dir/build.make src/plastimatch/standalone/CMakeFiles/compute_distance.dir/depend -make -f src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/build.make src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/depend make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/DependInfo.cmake --color= -make -f src/plastimatch/standalone/CMakeFiles/wed.dir/build.make src/plastimatch/standalone/CMakeFiles/wed.dir/depend make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli/CMakeFiles/plastimatch.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/compute_distance.dir/DependInfo.cmake --color= -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli/CMakeFiles/plastimatch.dir/DependInfo.cmake --color= +make -f src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/build.make src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/depend +make -f src/plastimatch/standalone/CMakeFiles/wed.dir/build.make src/plastimatch/standalone/CMakeFiles/wed.dir/depend make -f src/plastimatch/standalone/CMakeFiles/dlib_train.dir/build.make src/plastimatch/standalone/CMakeFiles/dlib_train.dir/depend +make -f src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/build.make src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/depend +make -f src/plastimatch/standalone/CMakeFiles/sobp.dir/build.make src/plastimatch/standalone/CMakeFiles/sobp.dir/depend make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/wed.dir/DependInfo.cmake --color= -make -f src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/build.make src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/depend -make -f src/plastimatch/standalone/CMakeFiles/sobp.dir/build.make src/plastimatch/standalone/CMakeFiles/sobp.dir/depend +make -f src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/build.make src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/depend +make -f src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/build.make src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/depend +make -f src/plastimatch/standalone/CMakeFiles/demons.dir/build.make src/plastimatch/standalone/CMakeFiles/demons.dir/depend +make -f src/plastimatch/standalone/CMakeFiles/check_grad.dir/build.make src/plastimatch/standalone/CMakeFiles/check_grad.dir/depend make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/dlib_train.dir/DependInfo.cmake --color= -make -f src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/build.make src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/depend +make -f src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/build.make src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/depend make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/DependInfo.cmake --color= -make -f src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/build.make src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/depend -Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/compute_distance.dir/DependInfo.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/compute_distance.dir/depend.internal". -Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/compute_distance.dir/depend.internal". make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/sobp.dir/DependInfo.cmake --color= -Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli/CMakeFiles/plastimatch.dir/DependInfo.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli/CMakeFiles/plastimatch.dir/depend.internal". -Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli/CMakeFiles/plastimatch.dir/depend.internal". -Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/wed.dir/DependInfo.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/wed.dir/depend.internal". -Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/wed.dir/depend.internal". -Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/DependInfo.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/depend.internal". -Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/depend.internal". -make -f src/plastimatch/standalone/CMakeFiles/demons.dir/build.make src/plastimatch/standalone/CMakeFiles/demons.dir/depend +make -f src/plastimatch/standalone/CMakeFiles/dicom_info.dir/build.make src/plastimatch/standalone/CMakeFiles/dicom_info.dir/depend make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/DependInfo.cmake --color= -make -f src/plastimatch/standalone/CMakeFiles/check_grad.dir/build.make src/plastimatch/standalone/CMakeFiles/check_grad.dir/depend -make -f src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/build.make src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/depend -Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/DependInfo.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/depend.internal". -Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/depend.internal". -make -f src/plastimatch/standalone/CMakeFiles/dicom_info.dir/build.make src/plastimatch/standalone/CMakeFiles/dicom_info.dir/depend -make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/check_grad.dir/DependInfo.cmake --color= +make -f src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/build.make src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/depend make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/demons.dir/DependInfo.cmake --color= -Scanning dependencies of target landmark_diff +make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/check_grad.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -make -f src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/build.make src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/build -Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/dlib_train.dir/DependInfo.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/dlib_train.dir/depend.internal". -Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/dlib_train.dir/depend.internal". -Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/sobp.dir/DependInfo.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/sobp.dir/depend.internal". -Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/sobp.dir/depend.internal". make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/dicom_info.dir/DependInfo.cmake --color= -make -f src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/build.make src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/depend -make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/DependInfo.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/depend.internal". -Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/depend.internal". make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/DependInfo.cmake --color= -Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/DependInfo.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/depend.internal". -Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/depend.internal". -Scanning dependencies of target wed -make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -make -f src/plastimatch/standalone/CMakeFiles/wed.dir/build.make src/plastimatch/standalone/CMakeFiles/wed.dir/build +Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/DependInfo.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/depend.internal". +Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/depend.internal". +Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/compute_distance.dir/DependInfo.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/compute_distance.dir/depend.internal". +Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/compute_distance.dir/depend.internal". +Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli/CMakeFiles/plastimatch.dir/DependInfo.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli/CMakeFiles/plastimatch.dir/depend.internal". +Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli/CMakeFiles/plastimatch.dir/depend.internal". +Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/DependInfo.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/depend.internal". +Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/depend.internal". Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/demons.dir/DependInfo.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/demons.dir/depend.internal". Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/demons.dir/depend.internal". -make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -Scanning dependencies of target dlib_train +Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/sobp.dir/DependInfo.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/sobp.dir/depend.internal". +Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/sobp.dir/depend.internal". +Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/wed.dir/DependInfo.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/wed.dir/depend.internal". +Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/wed.dir/depend.internal". +Scanning dependencies of target landmark_diff Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/DependInfo.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/depend.internal". Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/depend.internal". -Scanning dependencies of target demons -make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -make -f src/plastimatch/standalone/CMakeFiles/dlib_train.dir/build.make src/plastimatch/standalone/CMakeFiles/dlib_train.dir/build -make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' +Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/dlib_train.dir/DependInfo.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/dlib_train.dir/depend.internal". +Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/dlib_train.dir/depend.internal". +Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/DependInfo.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/depend.internal". +Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/depend.internal". +Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/DependInfo.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/depend.internal". +Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/depend.internal". 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Scanning dependencies of target hnd_to_pfm -Scanning dependencies of target bragg_curve -[ 77%] Building CXX object src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/landmark_diff_main.cxx.o +Scanning dependencies of target demons make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -Scanning dependencies of target dicom_uid -make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' +Scanning dependencies of target dlib_train make -f src/plastimatch/standalone/CMakeFiles/demons.dir/build.make src/plastimatch/standalone/CMakeFiles/demons.dir/build +make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' +make -f src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/build.make src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/build make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' 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depender "/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/depend.internal". +make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' +make -f src/plastimatch/standalone/CMakeFiles/dlib_train.dir/build.make src/plastimatch/standalone/CMakeFiles/dlib_train.dir/build +Scanning dependencies of target bragg_curve +make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' +make -f src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/build.make src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/build +make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' +[ 77%] Building CXX object src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/landmark_diff_main.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/landmark_diff.dir/landmark_diff_main.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/landmark_diff_main.cxx Scanning dependencies of target sobp -[ 78%] Building CXX object src/plastimatch/standalone/CMakeFiles/wed.dir/wed_main.cxx.o -make -f src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/build.make src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/build -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/wed.dir/wed_main.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/wed_main.cxx -make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/sobp.dir/build.make src/plastimatch/standalone/CMakeFiles/sobp.dir/build -Scanning dependencies of target compute_distance +[ 77%] Building CXX object src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/hnd_to_pfm.cxx.o +[ 77%] Building CXX object src/plastimatch/standalone/CMakeFiles/demons.dir/demons_main.cxx.o +[ 77%] Building CXX object src/plastimatch/standalone/CMakeFiles/dlib_train.dir/dlib_train.cxx.o +Scanning dependencies of target dicom_uid +Scanning dependencies of target xvi_archive make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -[ 78%] Building CXX object src/plastimatch/standalone/CMakeFiles/dlib_train.dir/dlib_train.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/hnd_to_pfm.dir/hnd_to_pfm.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/hnd_to_pfm.cxx cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/dlib_train.dir/dlib_train.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/dlib_train.cxx -make -f src/plastimatch/standalone/CMakeFiles/compute_distance.dir/build.make src/plastimatch/standalone/CMakeFiles/compute_distance.dir/build -make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' Scanning dependencies of target shuffle_mha -make -f src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/build.make src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/build make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' +make -f src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/build.make src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/build +make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' +[ 77%] Building CXX object src/plastimatch/standalone/CMakeFiles/demons.dir/demons_opts.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/demons.dir/demons_main.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/demons_main.cxx +Scanning dependencies of target wed make -f src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/build.make src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/build -make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -make -f src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/build.make src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/build -[ 78%] Building CXX object src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/dicom_uid_main.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/dicom_uid.dir/dicom_uid_main.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/dicom_uid_main.cxx Scanning dependencies of target merge_vfs +Scanning dependencies of target check_grad make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/demons.dir/demons_opts.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/demons_opts.cxx make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' +[ 77%] Building CXX object src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/bragg_curve_main.cxx.o +make -f src/plastimatch/standalone/CMakeFiles/wed.dir/build.make src/plastimatch/standalone/CMakeFiles/wed.dir/build +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/bragg_curve.dir/bragg_curve_main.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/bragg_curve_main.cxx make -f src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/build.make src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/build -[ 78%] Building CXX object src/plastimatch/standalone/CMakeFiles/demons.dir/demons_main.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/demons.dir/demons_main.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/demons_main.cxx -[ 79%] Building CXX object src/plastimatch/standalone/CMakeFiles/sobp.dir/sobp_main.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/sobp.dir/sobp_main.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/sobp_main.cxx -Scanning dependencies of target check_grad -make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -make -f src/plastimatch/standalone/CMakeFiles/check_grad.dir/build.make src/plastimatch/standalone/CMakeFiles/check_grad.dir/build make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -[ 79%] Building CXX object src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/hnd_to_pfm.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/hnd_to_pfm.dir/hnd_to_pfm.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/hnd_to_pfm.cxx +make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' Scanning dependencies of target dicom_info +make -f src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/build.make src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/build make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -make -f src/plastimatch/standalone/CMakeFiles/dicom_info.dir/build.make src/plastimatch/standalone/CMakeFiles/dicom_info.dir/build make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -[ 79%] Building CXX object src/plastimatch/standalone/CMakeFiles/compute_distance.dir/compute_distance.cxx.o +[ 78%] Building CXX object src/plastimatch/standalone/CMakeFiles/sobp.dir/sobp_main.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/sobp.dir/sobp_main.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/sobp_main.cxx +make -f src/plastimatch/standalone/CMakeFiles/check_grad.dir/build.make src/plastimatch/standalone/CMakeFiles/check_grad.dir/build +make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' +[ 78%] Building CXX object src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/dicom_uid_main.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/dicom_uid.dir/dicom_uid_main.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/dicom_uid_main.cxx +make -f src/plastimatch/standalone/CMakeFiles/dicom_info.dir/build.make src/plastimatch/standalone/CMakeFiles/dicom_info.dir/build +[ 79%] Building CXX object src/plastimatch/standalone/CMakeFiles/wed.dir/wed_main.cxx.o [ 79%] Building CXX object src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/shuffle_mha_main.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/compute_distance.dir/compute_distance.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/compute_distance.cxx -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/shuffle_mha.dir/shuffle_mha_main.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/shuffle_mha_main.cxx -Scanning dependencies of target xvi_archive +Scanning dependencies of target compute_distance make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -[ 79%] Building CXX object src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/bragg_curve_main.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/bragg_curve.dir/bragg_curve_main.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/bragg_curve_main.cxx +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/wed.dir/wed_main.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/wed_main.cxx +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/shuffle_mha.dir/shuffle_mha_main.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/shuffle_mha_main.cxx +[ 79%] Building CXX object src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/merge_vector_fields.cxx.o make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -make -f src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/build.make src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/build +make -f src/plastimatch/standalone/CMakeFiles/compute_distance.dir/build.make src/plastimatch/standalone/CMakeFiles/compute_distance.dir/build make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -[ 79%] Building CXX object src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/merge_vector_fields.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/merge_vfs.dir/merge_vector_fields.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/merge_vector_fields.cxx +[ 79%] Building CXX object src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/xvi_archive.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/xvi_archive.dir/xvi_archive.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/xvi_archive.cxx [ 80%] Building CXX object src/plastimatch/standalone/CMakeFiles/check_grad.dir/check_grad.cxx.o +make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/check_grad.dir/check_grad.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/check_grad.cxx [ 80%] Building CXX object src/plastimatch/standalone/CMakeFiles/dicom_info.dir/dicom_info.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/dicom_info.dir/dicom_info.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/dicom_info.cxx -[ 80%] Building CXX object src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/xvi_archive.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/xvi_archive.dir/xvi_archive.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/xvi_archive.cxx +[ 80%] Building CXX object src/plastimatch/standalone/CMakeFiles/compute_distance.dir/compute_distance.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/compute_distance.dir/compute_distance.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/compute_distance.cxx [ 81%] Linking CXX executable ../../../landmark_diff cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/landmark_diff.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/landmark_diff.dir/landmark_diff_main.cxx.o -o ../../../landmark_diff -L/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 /usr/lib/x86_64-linux-gnu/libdouble-conversion.so.3.1 -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libi2d.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg8.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg12.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg16.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libcharls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libcmr.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmrt.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmseg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmtract.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/x86_64-linux-gnu/libdcmtls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmsr.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmimage.so.15.3.6.5 -ltiff -lxml2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.15.3.6.5 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmnet.so.15.3.6.5 -lwrap /usr/lib/x86_64-linux-gnu/libdcmimgle.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmfg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmiod.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmdata.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/liboflog.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libofstd.so.15.3.6.5 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.8 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKFFT-4.13.so.1 -lfftw3 -lfftw3_threads -lfftw3f -lfftw3f_threads /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 [ 81%] Building CXX object src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/bragg_curve_opts.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/bragg_curve.dir/bragg_curve_opts.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/bragg_curve_opts.cxx +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/landmark_diff.dir/landmark_diff_main.cxx.o -o ../../../landmark_diff -L/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 /usr/lib/x86_64-linux-gnu/libdouble-conversion.so.3.1 -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libi2d.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg8.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg12.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg16.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libcharls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libcmr.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmrt.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmseg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmtract.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/x86_64-linux-gnu/libdcmtls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmsr.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmimage.so.15.3.6.5 -ltiff -lxml2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.15.3.6.5 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmnet.so.15.3.6.5 -lwrap /usr/lib/x86_64-linux-gnu/libdcmimgle.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmfg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmiod.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmdata.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/liboflog.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libofstd.so.15.3.6.5 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.8 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKFFT-4.13.so.1 -lfftw3 -lfftw3_threads -lfftw3f -lfftw3f_threads /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 [ 81%] Linking CXX executable ../../../hnd_to_pfm cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/hnd_to_pfm.dir/link.txt --verbose=1 [ 81%] Linking CXX executable ../../../bragg_curve -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/hnd_to_pfm.dir/hnd_to_pfm.cxx.o -o ../../../hnd_to_pfm -L/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 /usr/lib/x86_64-linux-gnu/libdouble-conversion.so.3.1 -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libi2d.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg8.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg12.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg16.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libcharls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libcmr.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmrt.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmseg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmtract.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/x86_64-linux-gnu/libdcmtls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmsr.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmimage.so.15.3.6.5 -ltiff -lxml2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.15.3.6.5 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmnet.so.15.3.6.5 -lwrap /usr/lib/x86_64-linux-gnu/libdcmimgle.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmfg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmiod.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmdata.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/liboflog.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libofstd.so.15.3.6.5 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.8 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKFFT-4.13.so.1 -lfftw3 -lfftw3_threads -lfftw3f -lfftw3f_threads /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/bragg_curve.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/bragg_curve.dir/bragg_curve_main.cxx.o CMakeFiles/bragg_curve.dir/bragg_curve_opts.cxx.o -o ../../../bragg_curve -L/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 /usr/lib/x86_64-linux-gnu/libdouble-conversion.so.3.1 -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libi2d.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg8.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg12.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg16.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libcharls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libcmr.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmrt.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmseg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmtract.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/x86_64-linux-gnu/libdcmtls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmsr.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmimage.so.15.3.6.5 -ltiff -lxml2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.15.3.6.5 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmnet.so.15.3.6.5 -lwrap /usr/lib/x86_64-linux-gnu/libdcmimgle.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmfg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmiod.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmdata.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/liboflog.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libofstd.so.15.3.6.5 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.8 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKFFT-4.13.so.1 -lfftw3 -lfftw3_threads -lfftw3f -lfftw3f_threads /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/hnd_to_pfm.dir/hnd_to_pfm.cxx.o -o ../../../hnd_to_pfm -L/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 /usr/lib/x86_64-linux-gnu/libdouble-conversion.so.3.1 -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libi2d.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg8.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg12.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg16.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libcharls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libcmr.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmrt.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmseg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmtract.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/x86_64-linux-gnu/libdcmtls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmsr.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmimage.so.15.3.6.5 -ltiff -lxml2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.15.3.6.5 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmnet.so.15.3.6.5 -lwrap /usr/lib/x86_64-linux-gnu/libdcmimgle.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmfg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmiod.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmdata.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/liboflog.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libofstd.so.15.3.6.5 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.8 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKFFT-4.13.so.1 -lfftw3 -lfftw3_threads -lfftw3f -lfftw3f_threads /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 Scanning dependencies of target plastimatch make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/cli/CMakeFiles/plastimatch.dir/build.make src/plastimatch/cli/CMakeFiles/plastimatch.dir/build -[ 81%] Building CXX object src/plastimatch/standalone/CMakeFiles/demons.dir/demons_opts.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/demons.dir/demons_opts.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/demons_opts.cxx +[ 81%] Building CXX object src/plastimatch/standalone/CMakeFiles/compute_distance.dir/closest_point.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/compute_distance.dir/closest_point.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/closest_point.cxx make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' [ 81%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_add.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_add.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_add.cxx [ 82%] Linking CXX executable ../../../demons cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/demons.dir/link.txt --verbose=1 -make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/demons.dir/demons_main.cxx.o CMakeFiles/demons.dir/demons_opts.cxx.o -o ../../../demons -L/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 /usr/lib/x86_64-linux-gnu/libdouble-conversion.so.3.1 -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libi2d.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg8.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg12.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg16.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libcharls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libcmr.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmrt.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmseg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmtract.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/x86_64-linux-gnu/libdcmtls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmsr.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmimage.so.15.3.6.5 -ltiff -lxml2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.15.3.6.5 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmnet.so.15.3.6.5 -lwrap /usr/lib/x86_64-linux-gnu/libdcmimgle.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmfg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmiod.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmdata.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/liboflog.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libofstd.so.15.3.6.5 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.8 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKFFT-4.13.so.1 -lfftw3 -lfftw3_threads -lfftw3f -lfftw3f_threads /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 +make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' [ 82%] Built target bragg_curve -[ 83%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_adjust.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_adjust.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_adjust.cxx +[ 83%] Building CXX object src/plastimatch/standalone/CMakeFiles/compute_distance.dir/read_obj.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/compute_distance.dir/read_obj.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/read_obj.cxx [ 83%] Linking CXX executable ../../../sobp cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/sobp.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/sobp.dir/sobp_main.cxx.o -o ../../../sobp -L/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 /usr/lib/x86_64-linux-gnu/libdouble-conversion.so.3.1 -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libi2d.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg8.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg12.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg16.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libcharls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libcmr.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmrt.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmseg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmtract.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/x86_64-linux-gnu/libdcmtls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmsr.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmimage.so.15.3.6.5 -ltiff -lxml2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.15.3.6.5 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmnet.so.15.3.6.5 -lwrap /usr/lib/x86_64-linux-gnu/libdcmimgle.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmfg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmiod.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmdata.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/liboflog.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libofstd.so.15.3.6.5 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.8 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKFFT-4.13.so.1 -lfftw3 -lfftw3_threads -lfftw3f -lfftw3f_threads /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 -make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -[ 83%] Built target landmark_diff -[ 83%] Building CXX object src/plastimatch/standalone/CMakeFiles/compute_distance.dir/closest_point.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/compute_distance.dir/closest_point.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/closest_point.cxx [ 83%] Linking CXX executable ../../../dicom_uid cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/dicom_uid.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/dicom_uid.dir/dicom_uid_main.cxx.o -o ../../../dicom_uid -L/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 /usr/lib/x86_64-linux-gnu/libdouble-conversion.so.3.1 -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libi2d.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg8.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg12.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg16.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libcharls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libcmr.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmrt.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmseg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmtract.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/x86_64-linux-gnu/libdcmtls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmsr.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmimage.so.15.3.6.5 -ltiff -lxml2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.15.3.6.5 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmnet.so.15.3.6.5 -lwrap /usr/lib/x86_64-linux-gnu/libdcmimgle.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmfg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmiod.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmdata.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/liboflog.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libofstd.so.15.3.6.5 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.8 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKFFT-4.13.so.1 -lfftw3 -lfftw3_threads -lfftw3f -lfftw3f_threads /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -[ 83%] Built target hnd_to_pfm -[ 83%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_autolabel_train.cxx.o +[ 84%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_adjust.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_adjust.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_adjust.cxx +[ 84%] Built target landmark_diff +[ 84%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_autolabel_train.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_autolabel_train.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_autolabel_train.cxx -[ 83%] Linking CXX executable ../../../wed -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/wed.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/wed.dir/wed_main.cxx.o -o ../../../wed -L/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 /usr/lib/x86_64-linux-gnu/libdouble-conversion.so.3.1 -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libi2d.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg8.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg12.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg16.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libcharls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libcmr.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmrt.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmseg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmtract.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/x86_64-linux-gnu/libdcmtls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmsr.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmimage.so.15.3.6.5 -ltiff -lxml2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.15.3.6.5 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmnet.so.15.3.6.5 -lwrap /usr/lib/x86_64-linux-gnu/libdcmimgle.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmfg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmiod.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmdata.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/liboflog.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libofstd.so.15.3.6.5 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.8 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKFFT-4.13.so.1 -lfftw3 -lfftw3_threads -lfftw3f -lfftw3f_threads /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -[ 83%] Built target sobp -[ 83%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_autolabel.cxx.o +[ 84%] Built target sobp +[ 84%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_autolabel.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_autolabel.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_autolabel.cxx +[ 84%] Linking CXX executable ../../../wed +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/wed.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/wed.dir/wed_main.cxx.o -o ../../../wed -L/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 /usr/lib/x86_64-linux-gnu/libdouble-conversion.so.3.1 -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libi2d.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg8.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg12.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg16.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libcharls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libcmr.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmrt.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmseg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmtract.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/x86_64-linux-gnu/libdcmtls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmsr.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmimage.so.15.3.6.5 -ltiff -lxml2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.15.3.6.5 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmnet.so.15.3.6.5 -lwrap /usr/lib/x86_64-linux-gnu/libdcmimgle.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmfg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmiod.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmdata.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/liboflog.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libofstd.so.15.3.6.5 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.8 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKFFT-4.13.so.1 -lfftw3 -lfftw3_threads -lfftw3f -lfftw3f_threads /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -[ 83%] Built target demons -[ 84%] Building CXX object src/plastimatch/standalone/CMakeFiles/compute_distance.dir/read_obj.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/compute_distance.dir/read_obj.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/read_obj.cxx -make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -[ 84%] Built target dicom_uid +[ 84%] Built target demons [ 84%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_bbox.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_bbox.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_bbox.cxx +make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' +[ 84%] Built target hnd_to_pfm [ 85%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_benchmark.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_benchmark.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_benchmark.cxx -make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -[ 85%] Built target wed +[ 85%] Linking CXX executable ../../../compute_distance +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/compute_distance.dir/link.txt --verbose=1 [ 85%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_boundary.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_boundary.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_boundary.cxx +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/compute_distance.dir/compute_distance.cxx.o CMakeFiles/compute_distance.dir/closest_point.cxx.o CMakeFiles/compute_distance.dir/read_obj.cxx.o -o ../../../compute_distance -L/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 /usr/lib/x86_64-linux-gnu/libdouble-conversion.so.3.1 -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libi2d.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg8.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg12.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg16.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libcharls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libcmr.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmrt.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmseg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmtract.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/x86_64-linux-gnu/libdcmtls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmsr.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmimage.so.15.3.6.5 -ltiff -lxml2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.15.3.6.5 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmnet.so.15.3.6.5 -lwrap /usr/lib/x86_64-linux-gnu/libdcmimgle.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmfg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmiod.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmdata.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/liboflog.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libofstd.so.15.3.6.5 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.8 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKFFT-4.13.so.1 -lfftw3 -lfftw3_threads -lfftw3f -lfftw3f_threads /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 +make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' +[ 85%] Built target dicom_uid [ 85%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_compare.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_compare.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_compare.cxx [ 85%] Linking CXX executable ../../../shuffle_mha cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/shuffle_mha.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/shuffle_mha.dir/shuffle_mha_main.cxx.o -o ../../../shuffle_mha -L/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 /usr/lib/x86_64-linux-gnu/libdouble-conversion.so.3.1 -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libi2d.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg8.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg12.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg16.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libcharls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libcmr.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmrt.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmseg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmtract.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/x86_64-linux-gnu/libdcmtls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmsr.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmimage.so.15.3.6.5 -ltiff -lxml2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.15.3.6.5 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmnet.so.15.3.6.5 -lwrap /usr/lib/x86_64-linux-gnu/libdcmimgle.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmfg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmiod.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmdata.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/liboflog.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libofstd.so.15.3.6.5 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.8 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKFFT-4.13.so.1 -lfftw3 -lfftw3_threads -lfftw3f -lfftw3f_threads /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 -[ 85%] Linking CXX executable ../../../compute_distance -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/compute_distance.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/compute_distance.dir/compute_distance.cxx.o CMakeFiles/compute_distance.dir/closest_point.cxx.o CMakeFiles/compute_distance.dir/read_obj.cxx.o -o ../../../compute_distance -L/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 /usr/lib/x86_64-linux-gnu/libdouble-conversion.so.3.1 -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libi2d.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg8.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg12.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg16.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libcharls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libcmr.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmrt.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmseg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmtract.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/x86_64-linux-gnu/libdcmtls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmsr.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmimage.so.15.3.6.5 -ltiff -lxml2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.15.3.6.5 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmnet.so.15.3.6.5 -lwrap /usr/lib/x86_64-linux-gnu/libdcmimgle.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmfg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmiod.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmdata.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/liboflog.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libofstd.so.15.3.6.5 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.8 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKFFT-4.13.so.1 -lfftw3 -lfftw3_threads -lfftw3f -lfftw3f_threads /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -[ 85%] Built target compute_distance +[ 85%] Built target wed [ 85%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_compose.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_compose.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_compose.cxx make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -[ 85%] Built target shuffle_mha +[ 85%] Built target compute_distance [ 86%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_crop.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_crop.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_crop.cxx +make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' +[ 86%] Built target shuffle_mha [ 86%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_dice.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_dice.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_dice.cxx [ 86%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_diff.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_diff.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_diff.cxx [ 87%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_dmap.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_dmap.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_dmap.cxx +[ 87%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_dose.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_dose.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_dose.cxx [ 87%] Linking CXX executable ../../../check_grad cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/check_grad.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/check_grad.dir/check_grad.cxx.o -o ../../../check_grad -L/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 /usr/lib/x86_64-linux-gnu/libdouble-conversion.so.3.1 -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libi2d.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg8.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg12.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg16.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libcharls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libcmr.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmrt.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmseg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmtract.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/x86_64-linux-gnu/libdcmtls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmsr.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmimage.so.15.3.6.5 -ltiff -lxml2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.15.3.6.5 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmnet.so.15.3.6.5 -lwrap /usr/lib/x86_64-linux-gnu/libdcmimgle.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmfg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmiod.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmdata.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/liboflog.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libofstd.so.15.3.6.5 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.8 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKFFT-4.13.so.1 -lfftw3 -lfftw3_threads -lfftw3f -lfftw3f_threads /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 -[ 87%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_dose.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_dose.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_dose.cxx [ 87%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_drr.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_drr.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_drr.cxx -make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -[ 87%] Built target check_grad [ 87%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_dvh.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_dvh.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_dvh.cxx [ 88%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_fdk.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_fdk.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_fdk.cxx -[ 88%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_filter.cxx.o +[ 89%] Linking CXX executable ../../../dicom_info +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/dicom_info.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/dicom_info.dir/dicom_info.cxx.o -o ../../../dicom_info -L/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 /usr/lib/x86_64-linux-gnu/libdouble-conversion.so.3.1 -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libi2d.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg8.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg12.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg16.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libcharls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libcmr.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmrt.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmseg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmtract.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/x86_64-linux-gnu/libdcmtls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmsr.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmimage.so.15.3.6.5 -ltiff -lxml2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.15.3.6.5 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmnet.so.15.3.6.5 -lwrap /usr/lib/x86_64-linux-gnu/libdcmimgle.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmfg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmiod.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmdata.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/liboflog.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libofstd.so.15.3.6.5 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.8 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKFFT-4.13.so.1 -lfftw3 -lfftw3_threads -lfftw3f -lfftw3f_threads /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 +[ 89%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_filter.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_filter.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_filter.cxx -[ 88%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_gamma.cxx.o +make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' +[ 89%] Built target check_grad +[ 89%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_gamma.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_gamma.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_gamma.cxx -[ 89%] Linking CXX executable ../../../xvi_archive +[ 90%] Linking CXX executable ../../../xvi_archive cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/xvi_archive.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/xvi_archive.dir/xvi_archive.cxx.o -o ../../../xvi_archive -L/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 /usr/lib/x86_64-linux-gnu/libdouble-conversion.so.3.1 -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libi2d.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg8.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg12.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg16.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libcharls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libcmr.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmrt.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmseg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmtract.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../libinih.a ../../../liblbfgs.a /usr/lib/x86_64-linux-gnu/libdcmtls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmsr.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmimage.so.15.3.6.5 -ltiff -lxml2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.15.3.6.5 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmnet.so.15.3.6.5 -lwrap /usr/lib/x86_64-linux-gnu/libdcmimgle.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmfg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmiod.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmdata.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/liboflog.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libofstd.so.15.3.6.5 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.8 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKFFT-4.13.so.1 -lfftw3 -lfftw3_threads -lfftw3f -lfftw3f_threads /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 -[ 90%] Linking CXX executable ../../../dicom_info -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/dicom_info.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/dicom_info.dir/dicom_info.cxx.o -o ../../../dicom_info -L/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 /usr/lib/x86_64-linux-gnu/libdouble-conversion.so.3.1 -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libi2d.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg8.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg12.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg16.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libcharls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libcmr.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmrt.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmseg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmtract.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/x86_64-linux-gnu/libdcmtls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmsr.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmimage.so.15.3.6.5 -ltiff -lxml2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.15.3.6.5 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmnet.so.15.3.6.5 -lwrap /usr/lib/x86_64-linux-gnu/libdcmimgle.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmfg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmiod.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmdata.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/liboflog.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libofstd.so.15.3.6.5 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.8 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKFFT-4.13.so.1 -lfftw3 -lfftw3_threads -lfftw3f -lfftw3f_threads /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 -[ 90%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_header.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_header.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_header.cxx make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' [ 90%] Built target dicom_info +[ 90%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_header.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_header.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_header.cxx [ 91%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_intersect.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_intersect.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_intersect.cxx [ 91%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_jacobian.cxx.o @@ -2529,12 +2564,12 @@ [ 93%] Linking CXX executable ../../../merge_vfs cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/merge_vfs.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/merge_vfs.dir/merge_vector_fields.cxx.o -o ../../../merge_vfs -L/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 /usr/lib/x86_64-linux-gnu/libdouble-conversion.so.3.1 -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libi2d.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg8.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg12.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg16.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libcharls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libcmr.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmrt.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmseg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmtract.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/x86_64-linux-gnu/libdcmtls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmsr.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmimage.so.15.3.6.5 -ltiff -lxml2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.15.3.6.5 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmnet.so.15.3.6.5 -lwrap /usr/lib/x86_64-linux-gnu/libdcmimgle.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmfg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmiod.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmdata.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/liboflog.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libofstd.so.15.3.6.5 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.8 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKFFT-4.13.so.1 -lfftw3 -lfftw3_threads -lfftw3f -lfftw3f_threads /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 -make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -[ 93%] Built target merge_vfs [ 93%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_maximum.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_maximum.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_maximum.cxx [ 93%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_ml_convert.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_ml_convert.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_ml_convert.cxx +make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' +[ 93%] Built target merge_vfs [ 93%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_multiply.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_multiply.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_multiply.cxx [ 94%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_probe.cxx.o @@ -2573,6 +2608,10 @@ cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_xio_dvh.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_xio_dvh.cxx [ 98%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_xf_convert.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_xf_convert.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_xf_convert.cxx +[ 98%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_xf_invert.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_xf_invert.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_xf_invert.cxx +[ 99%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/plastimatch_main.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/plastimatch_main.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/plastimatch_main.cxx /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_xio_dvh.cxx: In function 'void do_command_xio_dvh(int, char**)': /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_xio_dvh.cxx:46:7: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 46 | fgets(buf, 200, fp); //XiO Dose Volume Histogram @@ -2601,10 +2640,6 @@ /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_xio_dvh.cxx:78:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 78 | fgets(buf, 200, fp); | ~~~~~^~~~~~~~~~~~~~ -[ 98%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_xf_invert.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_xf_invert.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_xf_invert.cxx -[ 99%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/plastimatch_main.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/plastimatch_main.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/plastimatch_main.cxx [ 99%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/plastimatch_startup.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/plastimatch_startup.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/plastimatch_startup.cxx [ 99%] Linking CXX executable ../../../plastimatch @@ -2623,10 +2658,10 @@ debian/rules override_dh_auto_test make[1]: Entering directory '/build/plastimatch-1.9.3+dfsg.1' dh_auto_test - cd obj-x86_64-linux-gnu && make -j15 test ARGS\+=-j15 + cd obj-x86_64-linux-gnu && make -j16 test ARGS\+=-j16 make[2]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' Running tests... -/usr/bin/ctest --force-new-ctest-process -j15 +/usr/bin/ctest --force-new-ctest-process -j16 Test project /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu Start 10: gauss-1 Start 11: gauss-2 @@ -2643,1137 +2678,1137 @@ Start 13: gauss-4 Start 15: gauss-6 Start 17: gauss-double-1 - 1/571 Test #10: gauss-1 ............................... Passed 0.73 sec Start 18: gauss-double-2 - 2/571 Test #12: gauss-3 ............................... Passed 0.72 sec + 1/571 Test #11: gauss-2 ............................... Passed 0.38 sec Start 19: gauss-ushort-1 - 3/571 Test #11: gauss-2 ............................... Passed 0.75 sec + 2/571 Test #12: gauss-3 ............................... Passed 0.49 sec Start 20: gauss-ushort-2 - 4/571 Test #1: black-1 ............................... Passed 0.70 sec + 3/571 Test #13: gauss-4 ............................... Passed 0.37 sec Start 21: lung-1 - 5/571 Test #9: gabor-01 .............................. Passed 0.60 sec + 4/571 Test #1: black-1 ............................... Passed 0.49 sec Start 26: ptv-1 - 6/571 Test #14: gauss-5 ............................... Passed 0.85 sec + 5/571 Test #8: donut-2 ............................... Passed 0.48 sec Start 27: ptv-2 - 7/571 Test #5: cyl-mask-3 ............................ Passed 0.78 sec + 6/571 Test #10: gauss-1 ............................... Passed 0.67 sec Start 29: rect-2 - 8/571 Test #8: donut-2 ............................... Passed 0.75 sec + 7/571 Test #14: gauss-5 ............................... Passed 0.64 sec Start 30: rect-2s - 9/571 Test #15: gauss-6 ............................... Passed 0.70 sec + 8/571 Test #5: cyl-mask-3 ............................ Passed 0.57 sec Start 31: rect-3 - 10/571 Test #3: cyl-mask-2 ............................ Passed 0.86 sec + 9/571 Test #2: cyl-1 ................................. Passed 0.63 sec Start 32: rect-4 - 11/571 Test #2: cyl-1 ................................. Passed 0.93 sec + 10/571 Test #9: gabor-01 .............................. Passed 0.58 sec Start 33: rect-5 - 12/571 Test #13: gauss-4 ............................... Passed 0.85 sec + 11/571 Test #3: cyl-mask-2 ............................ Passed 0.69 sec Start 39: rect-10-roi-1 - 13/571 Test #17: gauss-double-1 ........................ Passed 0.85 sec + 12/571 Test #19: gauss-ushort-1 ........................ Passed 0.41 sec Start 42: rect-11-roi - 14/571 Test #18: gauss-double-2 ........................ Passed 0.45 sec + 13/571 Test #15: gauss-6 ............................... Passed 0.63 sec Start 43: rect-12 - 15/571 Test #19: gauss-ushort-1 ........................ Passed 0.51 sec + 14/571 Test #18: gauss-double-2 ........................ Passed 0.63 sec Start 44: rect-13 - 16/571 Test #33: rect-5 ................................ Passed 0.54 sec + 15/571 Test #17: gauss-double-1 ........................ Passed 0.66 sec Start 45: rect-14 - 17/571 Test #32: rect-4 ................................ Passed 0.62 sec + 16/571 Test #30: rect-2s ............................... Passed 0.42 sec Start 46: rect-15 - 18/571 Test #20: gauss-ushort-2 ........................ Passed 0.89 sec + 17/571 Test #26: ptv-1 ................................. Passed 0.60 sec Start 47: rect-16 - 19/571 Test #26: ptv-1 ................................. Passed 0.90 sec + 18/571 Test #27: ptv-2 ................................. Passed 0.55 sec Start 48: rect-17 - 20/571 Test #42: rect-11-roi ........................... Passed 0.62 sec + 19/571 Test #20: gauss-ushort-2 ........................ Passed 0.68 sec Start 56: rectarr-03-a - 21/571 Test #44: rect-13 ............................... Passed 0.49 sec + 20/571 Test #33: rect-5 ................................ Passed 0.46 sec Start 61: sphere-1 - 22/571 Test #27: ptv-2 ................................. Passed 0.89 sec + 21/571 Test #32: rect-4 ................................ Passed 0.54 sec Start 62: sphere-2 - 23/571 Test #30: rect-2s ............................... Passed 0.88 sec + 22/571 Test #44: rect-13 ............................... Passed 0.42 sec Start 63: sphere-3 - 24/571 Test #39: rect-10-roi-1 ......................... Passed 0.80 sec + 23/571 Test #42: rect-11-roi ........................... Passed 0.55 sec Start 65: sphere-5 - 25/571 Test #43: rect-12 ............................... Passed 0.78 sec + 24/571 Test #39: rect-10-roi-1 ......................... Passed 0.62 sec Start 71: vf-zero - 26/571 Test #61: sphere-1 .............................. Passed 0.42 sec + 25/571 Test #45: rect-14 ............................... Passed 0.61 sec Start 72: vf-trans-1 - 27/571 Test #45: rect-14 ............................... Passed 0.64 sec + 26/571 Test #43: rect-12 ............................... Passed 0.69 sec Start 73: vf-trans-2 - 28/571 Test #46: rect-15 ............................... Passed 0.63 sec + 27/571 Test #47: rect-16 ............................... Passed 0.38 sec Start 98: drr-a - 29/571 Test #56: rectarr-03-a .......................... Passed 0.57 sec + 28/571 Test #46: rect-15 ............................... Passed 0.47 sec Start 281: plm-reg-itk-translation - 30/571 Test #48: rect-17 ............................... Passed 0.64 sec + 29/571 Test #63: sphere-3 .............................. Passed 0.32 sec Start 313: plm-bsp-mse-h - 31/571 Test #63: sphere-3 .............................. Passed 0.58 sec + 30/571 Test #48: rect-17 ............................... Passed 0.51 sec Start 336: plm-bsp-mi-c-2 - 32/571 Test #65: sphere-5 .............................. Passed 0.54 sec + 31/571 Test #56: rectarr-03-a .......................... Passed 0.52 sec Start 439: plm-reg-compose - 33/571 Test #62: sphere-2 .............................. Passed 0.68 sec + 32/571 Test #62: sphere-2 .............................. Passed 0.54 sec Start 526: plm-xf-convert-d - 34/571 Test #47: rect-16 ............................... Passed 0.84 sec + 33/571 Test #65: sphere-5 .............................. Passed 0.46 sec Start 4: cyl-2 - 35/571 Test #72: vf-trans-1 ............................ Passed 0.45 sec + 34/571 Test #61: sphere-1 .............................. Passed 0.63 sec Start 6: cyl-3 - 36/571 Test #71: vf-zero ............................... Passed 0.69 sec + 35/571 Test #72: vf-trans-1 ............................ Passed 0.40 sec Start 22: lung-2 - 37/571 Test #28: rect-1 ................................ Passed 2.61 sec - Start 186: plm-convert-dicom-a - 38/571 Test #73: vf-trans-2 ............................ Passed 0.55 sec + 36/571 Test #73: vf-trans-2 ............................ Passed 0.38 sec Start 36: rect-8 - 39/571 Test #7: donut-1 ............................... Passed 2.62 sec + 37/571 Test #71: vf-zero ............................... Passed 0.61 sec Start 37: rect-9 - 40/571 Test #6: cyl-3 ................................. Passed 0.57 sec + 38/571 Test #28: rect-1 ................................ Passed 2.16 sec + Start 186: plm-convert-dicom-a + 39/571 Test #7: donut-1 ............................... Passed 2.17 sec Start 51: rectarr-01-a - 41/571 Test #526: plm-xf-convert-d ...................... Passed 0.75 sec + 40/571 Test #526: plm-xf-convert-d ...................... Passed 0.53 sec Start 57: rectarr-03 - 42/571 Test #4: cyl-2 ................................. Passed 0.76 sec + 41/571 Test #313: plm-bsp-mse-h ......................... Passed 0.89 sec Start 58: rectarr-04 - 43/571 Test #313: plm-bsp-mse-h ......................... Passed 1.03 sec + 42/571 Test #4: cyl-2 ................................. Passed 0.70 sec Start 66: sphere-6 - 44/571 Test #29: rect-2 ................................ Passed 2.49 sec + 43/571 Test #36: rect-8 ................................ Passed 0.67 sec Start 67: sphere-7 - 45/571 Test #37: rect-9 ................................ Passed 0.68 sec + 44/571 Test #281: plm-reg-itk-translation ............... Passed 1.02 sec Start 74: vf-radial-1 - 46/571 Test #31: rect-3 ................................ Passed 2.52 sec + 45/571 Test #37: rect-9 ................................ Passed 0.59 sec Start 90: plm-diff-a - 47/571 Test #36: rect-8 ................................ Passed 0.85 sec + 46/571 Test #29: rect-2 ................................ Passed 2.16 sec Start 93: plm-diff-b - 48/571 Test #281: plm-reg-itk-translation ............... Passed 1.47 sec + 47/571 Test #31: rect-3 ................................ Passed 2.16 sec Start 101: drr-b - 49/571 Test #98: drr-a ................................. Passed 1.58 sec + 48/571 Test #6: cyl-3 ................................. Passed 1.04 sec Start 104: drr-c - 50/571 Test #186: plm-convert-dicom-a ................... Passed 1.17 sec + 49/571 Test #439: plm-reg-compose ....................... Passed 1.26 sec + Start 113: landmark-warp-a + 50/571 Test #98: drr-a ................................. Passed 1.47 sec Start 107: fdk-cpu-a - 51/571 Test #439: plm-reg-compose ....................... Passed 1.54 sec + 51/571 Test #51: rectarr-01-a .......................... Passed 0.83 sec Start 110: fdk-cpu-d - 52/571 Test #51: rectarr-01-a .......................... Passed 0.87 sec - Start 113: landmark-warp-a - 53/571 Test #67: sphere-7 .............................. Passed 0.72 sec + 52/571 Test #66: sphere-6 .............................. Passed 0.66 sec Start 118: landmark-warp-b - 54/571 Test #58: rectarr-04 ............................ Passed 0.90 sec + 53/571 Test #67: sphere-7 .............................. Passed 0.71 sec Start 123: landmark-warp-c - 55/571 Test #90: plm-diff-a ............................ Passed 0.76 sec + 54/571 Test #57: rectarr-03 ............................ Passed 0.98 sec Start 129: plm-add-a - 56/571 Test #66: sphere-6 .............................. Passed 0.90 sec + 55/571 Test #186: plm-convert-dicom-a ................... Passed 1.13 sec Start 132: plm-add-b - 57/571 Test #57: rectarr-03 ............................ Passed 1.08 sec + 56/571 Test #90: plm-diff-a ............................ Passed 0.79 sec Start 135: plm-add-vf-a - 58/571 Test #74: vf-radial-1 ........................... Passed 0.88 sec + 57/571 Test #74: vf-radial-1 ........................... Passed 1.10 sec Start 138: plm-add-vf-b - 59/571 Test #93: plm-diff-b ............................ Passed 0.79 sec + 58/571 Test #58: rectarr-04 ............................ Passed 1.44 sec Start 141: plm-adjust-a - 60/571 Test #113: landmark-warp-a ....................... Passed 1.10 sec + 59/571 Test #113: landmark-warp-a ....................... Passed 0.99 sec Start 144: plm-adjust-b - 61/571 Test #118: landmark-warp-b ....................... Passed 1.06 sec + 60/571 Test #93: plm-diff-b ............................ Passed 1.16 sec Start 147: plm-adjust-c - 62/571 Test #132: plm-add-b ............................. Passed 1.01 sec + 61/571 Test #118: landmark-warp-b ....................... Passed 1.17 sec Start 150: plm-adjust-d - 63/571 Test #123: landmark-warp-c ....................... Passed 1.23 sec + 62/571 Test #101: drr-b ................................. Passed 1.52 sec Start 153: plm-adjust-e - 64/571 Test #135: plm-add-vf-a .......................... Passed 1.13 sec + 63/571 Test #104: drr-c ................................. Passed 1.57 sec Start 156: plm-adjust-f - 65/571 Test #129: plm-add-a ............................. Passed 1.28 sec + 64/571 Test #135: plm-add-vf-a .......................... Passed 1.11 sec Start 159: plm-adjust-g - 66/571 Test #104: drr-c ................................. Passed 1.93 sec + 65/571 Test #129: plm-add-a ............................. Passed 1.25 sec Start 162: plm-adjust-h - 67/571 Test #138: plm-add-vf-b .......................... Passed 1.47 sec + 66/571 Test #132: plm-add-b ............................. Passed 1.23 sec Start 165: plm-adjust-i - 68/571 Test #101: drr-b ................................. Passed 2.06 sec + 67/571 Test #123: landmark-warp-c ....................... Passed 1.32 sec Start 168: plm-adjust-j - 69/571 Test #141: plm-adjust-a .......................... Passed 1.50 sec + 68/571 Test #138: plm-add-vf-b .......................... Passed 0.97 sec Start 171: plm-boundary-a - 70/571 Test #144: plm-adjust-b .......................... Passed 0.82 sec + 69/571 Test #107: fdk-cpu-a ............................. Passed 1.73 sec Start 174: plm-boundary-b - 71/571 Test #150: plm-adjust-d .......................... Passed 0.88 sec + 70/571 Test #147: plm-adjust-c .......................... Passed 0.85 sec Start 177: plm-boundary-c - 72/571 Test #107: fdk-cpu-a ............................. Passed 2.37 sec + 71/571 Test #144: plm-adjust-b .......................... Passed 0.92 sec Start 180: plm-boundary-d - 73/571 Test #336: plm-bsp-mi-c-2 ........................ Passed 3.85 sec + 72/571 Test #141: plm-adjust-a .......................... Passed 0.98 sec Start 183: plm-boundary-e - 74/571 Test #156: plm-adjust-f .......................... Passed 0.83 sec + 73/571 Test #153: plm-adjust-e .......................... Passed 0.62 sec Start 189: plm-convert-dicom-b - 75/571 Test #153: plm-adjust-e .......................... Passed 0.95 sec + 74/571 Test #156: plm-adjust-f .......................... Passed 0.56 sec Start 198: plm-convert-dicom-donut-a - 76/571 Test #159: plm-adjust-g .......................... Passed 0.84 sec + 75/571 Test #336: plm-bsp-mi-c-2 ........................ Passed 3.34 sec Start 201: plm-convert-dicom-donut-b - 77/571 Test #174: plm-boundary-b ........................ Passed 0.39 sec + 76/571 Test #150: plm-adjust-d .......................... Passed 0.70 sec Start 205: plm-convert-cxt - 78/571 Test #147: plm-adjust-c .......................... Passed 1.26 sec + 77/571 Test #174: plm-boundary-b ........................ Passed 0.42 sec Start 209: plm-convert-dose-scale - 79/571 Test #171: plm-boundary-a ........................ Passed 0.69 sec + 78/571 Test #165: plm-adjust-i .......................... Passed 0.60 sec Start 212: plm-crop-a - 80/571 Test #177: plm-boundary-c ........................ Passed 0.43 sec + 79/571 Test #171: plm-boundary-a ........................ Passed 0.54 sec Start 215: plm-crop-b - 81/571 Test #180: plm-boundary-d ........................ Passed 0.41 sec + 80/571 Test #159: plm-adjust-g .......................... Passed 0.74 sec Start 218: plm-crop-c - 82/571 Test #183: plm-boundary-e ........................ Passed 0.49 sec + 81/571 Test #168: plm-adjust-j .......................... Passed 0.70 sec Start 252: plm-fill-a - 83/571 Test #165: plm-adjust-i .......................... Passed 0.96 sec + 82/571 Test #162: plm-adjust-h .......................... Passed 0.79 sec Start 255: plm-mask-a - 84/571 Test #198: plm-convert-dicom-donut-a ............. Passed 0.51 sec + 83/571 Test #180: plm-boundary-d ........................ Passed 0.49 sec Start 258: plm-gamma-a - 85/571 Test #168: plm-adjust-j .......................... Passed 1.03 sec + 84/571 Test #177: plm-boundary-c ........................ Passed 0.55 sec Start 261: plm-gamma-b - 86/571 Test #205: plm-convert-cxt ....................... Passed 0.55 sec + 85/571 Test #205: plm-convert-cxt ....................... Passed 0.44 sec Start 268: plm-maximum-a - 87/571 Test #201: plm-convert-dicom-donut-b ............. Passed 0.59 sec + 86/571 Test #201: plm-convert-dicom-donut-b ............. Passed 0.48 sec Start 271: plm-multiply-a - 88/571 Test #162: plm-adjust-h .......................... Passed 1.26 sec + 87/571 Test #183: plm-boundary-e ........................ Passed 0.64 sec Start 274: plm-multiply-vf-a - 89/571 Test #209: plm-convert-dose-scale ................ Passed 0.58 sec + 88/571 Test #189: plm-convert-dicom-b ................... Passed 0.61 sec Start 278: plm-reg-align-center - 90/571 Test #189: plm-convert-dicom-b ................... Passed 0.84 sec + 89/571 Test #215: plm-crop-b ............................ Passed 0.47 sec Start 284: plm-reg-itk-rigid-a - 91/571 Test #215: plm-crop-b ............................ Passed 0.56 sec + 90/571 Test #198: plm-convert-dicom-donut-a ............. Passed 0.68 sec Start 289: plm-reg-itk-similarity - 92/571 Test #212: plm-crop-a ............................ Passed 0.63 sec + 91/571 Test #212: plm-crop-a ............................ Passed 0.66 sec Start 294: plm-reg-itk-bspline - 93/571 Test #218: plm-crop-c ............................ Passed 0.60 sec + 92/571 Test #218: plm-crop-c ............................ Passed 0.61 sec Start 297: plm-reg-itk-demons - 94/571 Test #252: plm-fill-a ............................ Passed 0.53 sec + 93/571 Test #255: plm-mask-a ............................ Passed 0.55 sec Start 307: plm-bsp-mse-c - 95/571 Test #255: plm-mask-a ............................ Passed 0.60 sec + 94/571 Test #252: plm-fill-a ............................ Passed 0.70 sec Start 310: plm-bsp-mse-g - 96/571 Test #268: plm-maximum-a ......................... Passed 0.62 sec + 95/571 Test #261: plm-gamma-b ........................... Passed 0.64 sec Start 316: plm-bsp-mse-i - 97/571 Test #261: plm-gamma-b ........................... Passed 0.72 sec + 96/571 Test #274: plm-multiply-vf-a ..................... Passed 0.52 sec Start 319: plm-bsp-mse-k - 98/571 Test #274: plm-multiply-vf-a ..................... Passed 0.67 sec + 97/571 Test #209: plm-convert-dose-scale ................ Passed 0.95 sec Start 322: plm-bsp-mse-l - 99/571 Test #271: plm-multiply-a ........................ Passed 0.77 sec + 98/571 Test #268: plm-maximum-a ......................... Passed 0.66 sec Start 333: plm-bsp-mi-c -100/571 Test #278: plm-reg-align-center .................. Passed 0.71 sec + 99/571 Test #271: plm-multiply-a ........................ Passed 0.72 sec Start 339: plm-bsp-mi-k -101/571 Test #258: plm-gamma-a ........................... Passed 0.91 sec +100/571 Test #278: plm-reg-align-center .................. Passed 0.78 sec Start 342: plm-bsp-gm-k -102/571 Test #307: plm-bsp-mse-c ......................... Passed 1.08 sec +101/571 Test #258: plm-gamma-a ........................... Passed 1.24 sec Start 347: plm-bsp-openmp -103/571 Test #310: plm-bsp-mse-g ......................... Passed 1.14 sec +102/571 Test #310: plm-bsp-mse-g ......................... Passed 0.89 sec Start 354: plm-bsp-ushort -104/571 Test #322: plm-bsp-mse-l ......................... Passed 0.85 sec +103/571 Test #307: plm-bsp-mse-c ......................... Passed 1.01 sec Start 357: plm-bsp-double -105/571 Test #319: plm-bsp-mse-k ......................... Passed 0.95 sec +104/571 Test #316: plm-bsp-mse-i ......................... Passed 0.98 sec Start 361: plm-bsp-char-output -106/571 Test #289: plm-reg-itk-similarity ................ Passed 1.56 sec +105/571 Test #319: plm-bsp-mse-k ......................... Passed 0.97 sec Start 365: plm-bsp-regularize-none -107/571 Test #316: plm-bsp-mse-i ......................... Passed 1.19 sec +106/571 Test #284: plm-reg-itk-rigid-a ................... Passed 1.47 sec Start 368: plm-bsp-regularize-analytic -108/571 Test #284: plm-reg-itk-rigid-a ................... Passed 1.67 sec +107/571 Test #289: plm-reg-itk-similarity ................ Passed 1.60 sec Start 371: plm-bsp-regularize-numeric -109/571 Test #333: plm-bsp-mi-c .......................... Passed 1.36 sec +108/571 Test #322: plm-bsp-mse-l ......................... Passed 1.27 sec Start 375: plm-bsp-landmark-b -110/571 Test #339: plm-bsp-mi-k .......................... Passed 1.49 sec +109/571 Test #333: plm-bsp-mi-c .......................... Passed 1.36 sec Start 378: plm-bsp-landmark-c -111/571 Test #342: plm-bsp-gm-k .......................... Passed 1.52 sec +110/571 Test #339: plm-bsp-mi-k .......................... Passed 1.56 sec Start 381: plm-bsp-landmark-d -112/571 Test #297: plm-reg-itk-demons .................... Passed 2.10 sec +111/571 Test #342: plm-bsp-gm-k .......................... Passed 1.44 sec Start 384: plm-bsp-landmark-e -113/571 Test #347: plm-bsp-openmp ........................ Passed 1.40 sec +112/571 Test #361: plm-bsp-char-output ................... Passed 0.95 sec Start 387: plm-bsp-dcos-a -114/571 Test #354: plm-bsp-ushort ........................ Passed 1.46 sec +113/571 Test #297: plm-reg-itk-demons .................... Passed 2.21 sec Start 390: plm-bsp-dcos-b -115/571 Test #357: plm-bsp-double ........................ Passed 1.62 sec +114/571 Test #347: plm-bsp-openmp ........................ Passed 1.50 sec Start 393: plm-bsp-dcos-c -116/571 Test #361: plm-bsp-char-output ................... Passed 1.72 sec +115/571 Test #354: plm-bsp-ushort ........................ Passed 1.25 sec Start 396: plm-bsp-dcos-d -117/571 Test #365: plm-bsp-regularize-none ............... Passed 1.90 sec +116/571 Test #357: plm-bsp-double ........................ Passed 1.51 sec Start 399: plm-bsp-dcos-e -118/571 Test #375: plm-bsp-landmark-b .................... Passed 1.57 sec +117/571 Test #375: plm-bsp-landmark-b .................... Passed 1.12 sec Start 402: plm-bsp-dcos-f -119/571 Test #294: plm-reg-itk-bspline ................... Passed 3.45 sec +118/571 Test #294: plm-reg-itk-bspline ................... Passed 2.76 sec Start 405: plm-reg-multi-a -120/571 Test #384: plm-bsp-landmark-e .................... Passed 1.34 sec +119/571 Test #365: plm-bsp-regularize-none ............... Passed 1.68 sec Start 408: plm-reg-multi-b -121/571 Test #378: plm-bsp-landmark-c .................... Passed 1.48 sec +120/571 Test #381: plm-bsp-landmark-d .................... Passed 1.55 sec Start 411: plm-reg-dv-itk-translation -122/571 Test #381: plm-bsp-landmark-d .................... Passed 1.54 sec +121/571 Test #378: plm-bsp-landmark-c .................... Passed 1.87 sec Start 420: plm-reg-process-a -123/571 Test #368: plm-bsp-regularize-analytic ........... Passed 2.61 sec +122/571 Test #384: plm-bsp-landmark-e .................... Passed 1.62 sec Start 423: plm-reg-trans-a -124/571 Test #387: plm-bsp-dcos-a ........................ Passed 1.84 sec +123/571 Test #396: plm-bsp-dcos-d ........................ Passed 1.38 sec Start 426: plm-reg-trans-b -125/571 Test #390: plm-bsp-dcos-b ........................ Passed 1.78 sec +124/571 Test #402: plm-bsp-dcos-f ........................ Passed 1.35 sec Start 429: plm-reg-trans-mi-a -126/571 Test #393: plm-bsp-dcos-c ........................ Passed 1.63 sec +125/571 Test #368: plm-bsp-regularize-analytic ........... Passed 2.76 sec Start 432: plm-reg-autores-a -127/571 Test #420: plm-reg-process-a ..................... Passed 1.00 sec +126/571 Test #393: plm-bsp-dcos-c ........................ Passed 1.85 sec Start 435: plm-reg-autores-b -128/571 Test #396: plm-bsp-dcos-d ........................ Passed 1.58 sec +127/571 Test #390: plm-bsp-dcos-b ........................ Passed 1.93 sec Start 440: plm-compose-a -129/571 Test #402: plm-bsp-dcos-f ........................ Passed 1.48 sec +128/571 Test #387: plm-bsp-dcos-a ........................ Passed 2.08 sec Start 444: plm-compose-b -130/571 Test #411: plm-reg-dv-itk-translation ............ Passed 1.53 sec +129/571 Test #399: plm-bsp-dcos-e ........................ Passed 1.80 sec Start 448: plm-compose-c -131/571 Test #399: plm-bsp-dcos-e ........................ Passed 1.64 sec +130/571 Test #420: plm-reg-process-a ..................... Passed 1.05 sec Start 452: plm-resample-a -132/571 Test #21: lung-1 ................................ Passed 11.65 sec - Start 192: plm-convert-dicom-c -133/571 Test #440: plm-compose-a ......................... Passed 0.84 sec +131/571 Test #440: plm-compose-a ......................... Passed 0.52 sec Start 455: plm-resample-b -134/571 Test #444: plm-compose-b ......................... Passed 0.68 sec +132/571 Test #444: plm-compose-b ......................... Passed 0.62 sec Start 458: plm-resample-c -135/571 Test #432: plm-reg-autores-a ..................... Passed 1.11 sec +133/571 Test #411: plm-reg-dv-itk-translation ............ Passed 1.34 sec Start 461: plm-scale-a -136/571 Test #452: plm-resample-a ........................ Passed 0.71 sec +134/571 Test #432: plm-reg-autores-a ..................... Passed 1.14 sec Start 464: plm-scale-vf-a -137/571 Test #435: plm-reg-autores-b ..................... Passed 1.44 sec +135/571 Test #448: plm-compose-c ......................... Passed 0.90 sec Start 470: plm-thumbnail-a -138/571 Test #408: plm-reg-multi-b ....................... Passed 2.63 sec +136/571 Test #435: plm-reg-autores-b ..................... Passed 1.26 sec Start 473: plm-thumbnail-b -139/571 Test #448: plm-compose-c ......................... Passed 1.22 sec +137/571 Test #455: plm-resample-b ........................ Passed 0.80 sec Start 476: plm-thumbnail-c -140/571 Test #455: plm-resample-b ........................ Passed 0.80 sec +138/571 Test #452: plm-resample-a ........................ Passed 0.98 sec Start 479: plm-intersect -141/571 Test #458: plm-resample-c ........................ Passed 0.82 sec +139/571 Test #461: plm-scale-a ........................... Passed 0.75 sec Start 482: plm-union -142/571 Test #464: plm-scale-vf-a ........................ Passed 0.68 sec +140/571 Test #408: plm-reg-multi-b ....................... Passed 2.74 sec Start 485: plm-threshold-a -143/571 Test #461: plm-scale-a ........................... Passed 0.89 sec +141/571 Test #21: lung-1 ................................ Passed 11.02 sec + Start 192: plm-convert-dicom-c +142/571 Test #458: plm-resample-c ........................ Passed 0.93 sec Start 488: plm-threshold-b -144/571 Test #192: plm-convert-dicom-c ................... Passed 1.36 sec +143/571 Test #464: plm-scale-vf-a ........................ Passed 0.76 sec Start 491: plm-threshold-c -145/571 Test #473: plm-thumbnail-b ....................... Passed 0.65 sec +144/571 Test #470: plm-thumbnail-a ....................... Passed 0.70 sec Start 497: plm-warp-a -146/571 Test #22: lung-2 ................................ Passed 11.40 sec +145/571 Test #479: plm-intersect ......................... Passed 0.55 sec Start 500: plm-warp-b -147/571 Test #476: plm-thumbnail-c ....................... Passed 0.66 sec +146/571 Test #473: plm-thumbnail-b ....................... Passed 0.77 sec Start 505: plm-warp-c -148/571 Test #470: plm-thumbnail-a ....................... Passed 0.89 sec +147/571 Test #485: plm-threshold-a ....................... Passed 0.57 sec Start 508: plm-warp-d -149/571 Test #482: plm-union ............................. Passed 0.70 sec +148/571 Test #488: plm-threshold-b ....................... Passed 0.44 sec Start 511: plm-warp-f -150/571 Test #479: plm-intersect ......................... Passed 0.85 sec +149/571 Test #476: plm-thumbnail-c ....................... Passed 0.74 sec Start 514: plm-warp-g -151/571 Test #488: plm-threshold-b ....................... Passed 0.57 sec +150/571 Test #491: plm-threshold-c ....................... Passed 0.41 sec Start 517: plm-warp-h -152/571 Test #485: plm-threshold-a ....................... Passed 0.78 sec +151/571 Test #482: plm-union ............................. Passed 0.79 sec Start 520: plm-warp-i -153/571 Test #491: plm-threshold-c ....................... Passed 0.72 sec +152/571 Test #110: fdk-cpu-d ............................. Passed 9.32 sec Start 523: plm-xf-convert-a -154/571 Test #110: fdk-cpu-d ............................. Passed 10.81 sec +153/571 Test #405: plm-reg-multi-a ....................... Passed 3.95 sec Start 527: plm-xf-convert-d-warp-1 -155/571 Test #500: plm-warp-b ............................ Passed 0.84 sec +154/571 Test #508: plm-warp-d ............................ Passed 0.58 sec Start 530: plm-xf-convert-d-warp-2 -156/571 Test #497: plm-warp-a ............................ Passed 0.97 sec +155/571 Test #497: plm-warp-a ............................ Passed 0.78 sec Start 536: plm-xf-convert-h -157/571 Test #511: plm-warp-f ............................ Passed 0.64 sec +156/571 Test #192: plm-convert-dicom-c ................... Passed 1.12 sec Start 539: xf-invert-vf-zero-1 -158/571 Test #508: plm-warp-d ............................ Passed 0.84 sec +157/571 Test #511: plm-warp-f ............................ Passed 0.69 sec Start 542: xf-invert-vf-trans-1 -159/571 Test #523: plm-xf-convert-a ...................... Passed 0.53 sec +158/571 Test #514: plm-warp-g ............................ Passed 0.68 sec Start 549: proton-dose-1 -160/571 Test #426: plm-reg-trans-b ....................... Passed 3.53 sec +159/571 Test #500: plm-warp-b ............................ Passed 0.82 sec Start 552: proton-dose-4a -161/571 Test #514: plm-warp-g ............................ Passed 0.91 sec +160/571 Test #22: lung-2 ................................ Passed 10.94 sec Start 555: proton-dose-4d -162/571 Test #520: plm-warp-i ............................ Passed 0.83 sec +161/571 Test #423: plm-reg-trans-a ....................... Passed 3.44 sec Start 558: proton-dose-5a -163/571 Test #517: plm-warp-h ............................ Passed 0.94 sec +162/571 Test #517: plm-warp-h ............................ Passed 0.71 sec Start 561: proton-dose-5d -164/571 Test #505: plm-warp-c ............................ Passed 1.22 sec +163/571 Test #505: plm-warp-c ............................ Passed 0.94 sec Start 564: proton-dose-6a -165/571 Test #405: plm-reg-multi-a ....................... Passed 4.75 sec +164/571 Test #523: plm-xf-convert-a ...................... Passed 0.50 sec Start 38: rect-10 -166/571 Test #423: plm-reg-trans-a ....................... Passed 4.09 sec +165/571 Test #520: plm-warp-i ............................ Passed 0.77 sec Start 41: rect-11 -167/571 Test #527: plm-xf-convert-d-warp-1 ............... Passed 0.79 sec +166/571 Test #426: plm-reg-trans-b ....................... Passed 3.69 sec Start 50: rect-19 -168/571 Test #536: plm-xf-convert-h ...................... Passed 0.75 sec +167/571 Test #527: plm-xf-convert-d-warp-1 ............... Passed 0.67 sec Start 52: rectarr-01 -169/571 Test #542: xf-invert-vf-trans-1 .................. Passed 0.72 sec +168/571 Test #539: xf-invert-vf-zero-1 ................... Passed 0.54 sec Start 53: rectarr-02 -170/571 Test #539: xf-invert-vf-zero-1 ................... Passed 0.84 sec +169/571 Test #542: xf-invert-vf-trans-1 .................. Passed 0.61 sec Start 54: rectarr-m-01 -171/571 Test #530: plm-xf-convert-d-warp-2 ............... Passed 1.07 sec +170/571 Test #536: plm-xf-convert-h ...................... Passed 0.84 sec Start 55: rectarr-m-02 -172/571 Test #41: rect-11 ............................... Passed 0.57 sec +171/571 Test #371: plm-bsp-regularize-numeric ............ Passed 6.16 sec Start 60: roi-1 -173/571 Test #38: rect-10 ............................... Passed 0.64 sec +172/571 Test #38: rect-10 ............................... Passed 0.55 sec Start 64: sphere-4 -174/571 Test #50: rect-19 ............................... Passed 0.51 sec +173/571 Test #41: rect-11 ............................... Passed 0.57 sec Start 76: vf-zero-stats -175/571 Test #371: plm-bsp-regularize-numeric ............ Passed 7.40 sec +174/571 Test #530: plm-xf-convert-d-warp-2 ............... Passed 1.04 sec Start 78: vf-trans-1-stats -176/571 Test #52: rectarr-01 ............................ Passed 0.58 sec +175/571 Test #50: rect-19 ............................... Passed 0.55 sec Start 80: vf-trans-2-stats -177/571 Test #53: rectarr-02 ............................ Passed 0.70 sec +176/571 Test #53: rectarr-02 ............................ Passed 0.55 sec Start 82: vf-radial-1-stats -178/571 Test #64: sphere-4 .............................. Passed 0.51 sec +177/571 Test #54: rectarr-m-01 .......................... Passed 0.54 sec Start 84: plm-compare-a -179/571 Test #54: rectarr-m-01 .......................... Passed 0.77 sec +178/571 Test #64: sphere-4 .............................. Passed 0.44 sec Start 86: plm-compare-b -180/571 Test #55: rectarr-m-02 .......................... Passed 0.60 sec +179/571 Test #52: rectarr-01 ............................ Passed 0.78 sec Start 88: plm-compare-c -181/571 Test #60: roi-1 ................................. Passed 0.67 sec +180/571 Test #60: roi-1 ................................. Passed 0.57 sec Start 91: plm-diff-a-stats -182/571 Test #78: vf-trans-1-stats ...................... Passed 0.62 sec +181/571 Test #55: rectarr-m-02 .......................... Passed 0.68 sec Start 94: plm-diff-b-stats -183/571 Test #76: vf-zero-stats ......................... Passed 0.78 sec +182/571 Test #76: vf-zero-stats ......................... Passed 0.62 sec Start 96: demons-a -184/571 Test #80: vf-trans-2-stats ...................... Passed 0.62 sec +183/571 Test #80: vf-trans-2-stats ...................... Passed 0.48 sec Start 99: drr-a-stats -185/571 Test #82: vf-radial-1-stats ..................... Passed 0.64 sec +184/571 Test #82: vf-radial-1-stats ..................... Passed 0.53 sec Start 102: drr-b-stats -186/571 Test #84: plm-compare-a ......................... Passed 0.65 sec +185/571 Test #84: plm-compare-a ......................... Passed 0.52 sec Start 105: drr-c-stats -187/571 Test #86: plm-compare-b ......................... Passed 0.69 sec +186/571 Test #78: vf-trans-1-stats ...................... Passed 0.80 sec Start 108: fdk-cpu-a-stats -188/571 Test #88: plm-compare-c ......................... Passed 0.76 sec +187/571 Test #86: plm-compare-b ......................... Passed 0.64 sec Start 111: fdk-cpu-d-stats -189/571 Test #99: drr-a-stats ........................... Passed 0.49 sec +188/571 Test #88: plm-compare-c ......................... Passed 0.67 sec Start 114: landmark-warp-a-stats-1 -190/571 Test #91: plm-diff-a-stats ...................... Passed 0.74 sec +189/571 Test #91: plm-diff-a-stats ...................... Passed 0.67 sec Start 116: landmark-warp-a-stats-2 -191/571 Test #94: plm-diff-b-stats ...................... Passed 0.82 sec +190/571 Test #94: plm-diff-b-stats ...................... Passed 0.63 sec Start 119: landmark-warp-b-stats-1 -192/571 Test #102: drr-b-stats ........................... Passed 0.60 sec +191/571 Test #105: drr-c-stats ........................... Passed 0.41 sec Start 121: landmark-warp-b-stats-2 -193/571 Test #105: drr-c-stats ........................... Passed 0.56 sec +192/571 Test #99: drr-a-stats ........................... Passed 0.58 sec Start 124: landmark-warp-c-stats-1 -194/571 Test #114: landmark-warp-a-stats-1 ............... Passed 0.55 sec +193/571 Test #102: drr-b-stats ........................... Passed 0.54 sec Start 126: landmark-warp-c-stats-2 -195/571 Test #111: fdk-cpu-d-stats ....................... Passed 0.68 sec +194/571 Test #108: fdk-cpu-a-stats ....................... Passed 0.60 sec Start 130: plm-add-a-stats -196/571 Test #108: fdk-cpu-a-stats ....................... Passed 0.86 sec +195/571 Test #114: landmark-warp-a-stats-1 ............... Passed 0.52 sec Start 133: plm-add-b-stats -197/571 Test #116: landmark-warp-a-stats-2 ............... Passed 0.71 sec +196/571 Test #111: fdk-cpu-d-stats ....................... Passed 0.71 sec Start 136: plm-add-vf-a-stats -198/571 Test #119: landmark-warp-b-stats-1 ............... Passed 0.66 sec +197/571 Test #119: landmark-warp-b-stats-1 ............... Passed 0.66 sec Start 139: plm-add-vf-b-stats -199/571 Test #121: landmark-warp-b-stats-2 ............... Passed 0.88 sec +198/571 Test #116: landmark-warp-a-stats-2 ............... Passed 0.78 sec Start 142: plm-adjust-a-stats -200/571 Test #124: landmark-warp-c-stats-1 ............... Passed 0.80 sec +199/571 Test #126: landmark-warp-c-stats-2 ............... Passed 0.64 sec Start 145: plm-adjust-b-stats -201/571 Test #130: plm-add-a-stats ....................... Passed 0.63 sec +200/571 Test #124: landmark-warp-c-stats-1 ............... Passed 0.68 sec Start 148: plm-adjust-c-stats -202/571 Test #136: plm-add-vf-a-stats .................... Passed 0.54 sec +201/571 Test #121: landmark-warp-b-stats-2 ............... Passed 0.72 sec Start 151: plm-adjust-d-stats -203/571 Test #126: landmark-warp-c-stats-2 ............... Passed 0.78 sec +202/571 Test #549: proton-dose-1 ......................... Passed 2.94 sec Start 154: plm-adjust-e-stats -204/571 Test #133: plm-add-b-stats ....................... Passed 0.79 sec +203/571 Test #133: plm-add-b-stats ....................... Passed 0.53 sec Start 157: plm-adjust-f-stats -205/571 Test #139: plm-add-vf-b-stats .................... Passed 0.80 sec +204/571 Test #130: plm-add-a-stats ....................... Passed 0.79 sec Start 160: plm-adjust-g-stats -206/571 Test #96: demons-a .............................. Passed 2.23 sec +205/571 Test #142: plm-adjust-a-stats .................... Passed 0.38 sec Start 163: plm-adjust-h-stats -207/571 Test #151: plm-adjust-d-stats .................... Passed 0.51 sec +206/571 Test #139: plm-add-vf-b-stats .................... Passed 0.57 sec Start 166: plm-adjust-i-stats -208/571 Test #145: plm-adjust-b-stats .................... Passed 0.65 sec +207/571 Test #145: plm-adjust-b-stats .................... Passed 0.49 sec Start 169: plm-adjust-j-stats -209/571 Test #154: plm-adjust-e-stats .................... Passed 0.53 sec +208/571 Test #136: plm-add-vf-a-stats .................... Passed 0.71 sec Start 172: plm-boundary-a-stats -210/571 Test #148: plm-adjust-c-stats .................... Passed 0.62 sec +209/571 Test #151: plm-adjust-d-stats .................... Passed 0.55 sec Start 175: plm-boundary-b-stats -211/571 Test #142: plm-adjust-a-stats .................... Passed 0.80 sec +210/571 Test #148: plm-adjust-c-stats .................... Passed 0.62 sec Start 178: plm-boundary-c-stats -212/571 Test #549: proton-dose-1 ......................... Passed 4.30 sec +211/571 Test #154: plm-adjust-e-stats .................... Passed 0.48 sec Start 181: plm-boundary-d-stats -213/571 Test #163: plm-adjust-h-stats .................... Passed 0.54 sec +212/571 Test #160: plm-adjust-g-stats .................... Passed 0.47 sec Start 184: plm-boundary-e-stats -214/571 Test #157: plm-adjust-f-stats .................... Passed 0.73 sec +213/571 Test #96: demons-a .............................. Passed 2.16 sec Start 187: plm-convert-dicom-a-stats -215/571 Test #172: plm-boundary-a-stats .................. Passed 0.55 sec +214/571 Test #157: plm-adjust-f-stats .................... Passed 0.65 sec Start 190: plm-convert-dicom-b-stats -216/571 Test #169: plm-adjust-j-stats .................... Passed 0.58 sec +215/571 Test #163: plm-adjust-h-stats .................... Passed 0.77 sec Start 193: plm-convert-dicom-c-stats -217/571 Test #166: plm-adjust-i-stats .................... Passed 0.64 sec +216/571 Test #169: plm-adjust-j-stats .................... Passed 0.66 sec Start 199: plm-convert-dicom-donut-a-stats -218/571 Test #160: plm-adjust-g-stats .................... Passed 0.81 sec +217/571 Test #175: plm-boundary-b-stats .................. Passed 0.60 sec Start 202: plm-convert-dicom-donut-b-stats -219/571 Test #178: plm-boundary-c-stats .................. Passed 0.58 sec +218/571 Test #190: plm-convert-dicom-b-stats ............. Passed 0.31 sec Start 206: plm-convert-cxt-stats -220/571 Test #190: plm-convert-dicom-b-stats ............. Passed 0.26 sec +219/571 Test #166: plm-adjust-i-stats .................... Passed 0.73 sec Start 208: plm-convert-prefix-fcsv -221/571 Test #175: plm-boundary-b-stats .................. Passed 0.81 sec +220/571 Test #172: plm-boundary-a-stats .................. Passed 0.73 sec Start 210: plm-convert-dose-scale-stats -222/571 Test #184: plm-boundary-e-stats .................. Passed 0.64 sec +221/571 Test #184: plm-boundary-e-stats .................. Passed 0.46 sec Start 213: plm-crop-a-stats -223/571 Test #187: plm-convert-dicom-a-stats ............. Passed 0.66 sec +222/571 Test #178: plm-boundary-c-stats .................. Passed 0.71 sec Start 216: plm-crop-b-stats -224/571 Test #181: plm-boundary-d-stats .................. Passed 0.97 sec +223/571 Test #187: plm-convert-dicom-a-stats ............. Passed 0.56 sec Start 219: plm-crop-c-stats -225/571 Test #193: plm-convert-dicom-c-stats ............. Passed 0.66 sec +224/571 Test #181: plm-boundary-d-stats .................. Passed 0.81 sec Start 221: plm-dice-a -226/571 Test #202: plm-convert-dicom-donut-b-stats ....... Passed 0.76 sec +225/571 Test #202: plm-convert-dicom-donut-b-stats ....... Passed 0.46 sec Start 223: plm-dice-b -227/571 Test #199: plm-convert-dicom-donut-a-stats ....... Passed 0.82 sec +226/571 Test #199: plm-convert-dicom-donut-a-stats ....... Passed 0.57 sec Start 225: plm-dice-c -228/571 Test #206: plm-convert-cxt-stats ................. Passed 0.75 sec +227/571 Test #193: plm-convert-dicom-c-stats ............. Passed 0.63 sec Start 231: plm-dice-d -229/571 Test #213: plm-crop-a-stats ...................... Passed 0.53 sec +228/571 Test #216: plm-crop-b-stats ...................... Passed 0.50 sec Start 237: plm-dice-e -230/571 Test #429: plm-reg-trans-mi-a .................... Passed 9.07 sec +229/571 Test #206: plm-convert-cxt-stats ................. Passed 0.69 sec Start 240: plm-dice-f -231/571 Test #210: plm-convert-dose-scale-stats .......... Passed 0.74 sec +230/571 Test #210: plm-convert-dose-scale-stats .......... Passed 0.77 sec Start 244: plm-dmap-b -232/571 Test #219: plm-crop-c-stats ...................... Passed 0.65 sec +231/571 Test #213: plm-crop-a-stats ...................... Passed 0.77 sec Start 246: plm-dvh-a -233/571 Test #216: plm-crop-b-stats ...................... Passed 0.69 sec +232/571 Test #221: plm-dice-a ............................ Passed 0.61 sec Start 249: plm-dvh-b -234/571 Test #221: plm-dice-a ............................ Passed 0.66 sec +233/571 Test #231: plm-dice-d ............................ Passed 0.43 sec Start 253: plm-fill-a-stats -235/571 Test #225: plm-dice-c ............................ Passed 0.64 sec +234/571 Test #219: plm-crop-c-stats ...................... Passed 0.79 sec Start 256: plm-mask-a-stats -236/571 Test #231: plm-dice-d ............................ Passed 0.72 sec +235/571 Test #225: plm-dice-c ............................ Passed 0.54 sec Start 259: plm-gamma-a-stats -237/571 Test #223: plm-dice-b ............................ Passed 0.77 sec +236/571 Test #223: plm-dice-b ............................ Passed 0.67 sec Start 262: plm-gamma-b-stats -238/571 Test #240: plm-dice-f ............................ Passed 0.77 sec +237/571 Test #240: plm-dice-f ............................ Passed 0.80 sec Start 264: plm-gamma-c -239/571 Test #244: plm-dmap-b ............................ Passed 0.80 sec +238/571 Test #244: plm-dmap-b ............................ Passed 0.69 sec Start 266: plm-gamma-d -240/571 Test #237: plm-dice-e ............................ Passed 0.85 sec +239/571 Test #249: plm-dvh-b ............................. Passed 0.64 sec Start 269: plm-maximum-a-stats -241/571 Test #246: plm-dvh-a ............................. Passed 0.69 sec +240/571 Test #237: plm-dice-e ............................ Passed 0.95 sec Start 272: plm-multiply-a-stats -242/571 Test #249: plm-dvh-b ............................. Passed 0.89 sec +241/571 Test #246: plm-dvh-a ............................. Passed 0.78 sec Start 275: plm-multiply-vf-a-stats -243/571 Test #253: plm-fill-a-stats ...................... Passed 0.86 sec +242/571 Test #256: plm-mask-a-stats ...................... Passed 0.63 sec Start 279: plm-reg-align-center-stats -244/571 Test #256: plm-mask-a-stats ...................... Passed 0.74 sec +243/571 Test #259: plm-gamma-a-stats ..................... Passed 0.59 sec Start 282: plm-reg-itk-translation-stats -245/571 Test #552: proton-dose-4a ........................ Passed 7.01 sec +244/571 Test #262: plm-gamma-b-stats ..................... Passed 0.56 sec Start 285: plm-reg-itk-rigid-a-stats-1 -246/571 Test #262: plm-gamma-b-stats ..................... Passed 0.73 sec +245/571 Test #253: plm-fill-a-stats ...................... Passed 0.74 sec Start 287: plm-reg-itk-rigid-a-stats-2 -247/571 Test #259: plm-gamma-a-stats ..................... Passed 0.82 sec +246/571 Test #269: plm-maximum-a-stats ................... Passed 0.46 sec Start 290: plm-reg-itk-similarity-stats-1 -248/571 Test #269: plm-maximum-a-stats ................... Passed 0.63 sec +247/571 Test #558: proton-dose-5a ........................ Passed 5.91 sec Start 292: plm-reg-itk-similarity-stats-2 -249/571 Test #272: plm-multiply-a-stats .................. Passed 0.72 sec +248/571 Test #275: plm-multiply-vf-a-stats ............... Passed 0.60 sec Start 295: plm-reg-itk-bspline-stats-1 -250/571 Test #264: plm-gamma-c ........................... Passed 0.86 sec +249/571 Test #282: plm-reg-itk-translation-stats ......... Passed 0.58 sec Start 299: plm-reg-itk-demons-stats-2 -251/571 Test #266: plm-gamma-d ........................... Passed 0.82 sec +250/571 Test #264: plm-gamma-c ........................... Passed 0.77 sec Start 301: plm-reg-itk-demons-diff -252/571 Test #275: plm-multiply-vf-a-stats ............... Passed 0.61 sec +251/571 Test #287: plm-reg-itk-rigid-a-stats-2 ........... Passed 0.56 sec Start 303: plm-reg-itk-demons-logd -253/571 Test #208: plm-convert-prefix-fcsv ............... Passed 2.59 sec +252/571 Test #266: plm-gamma-d ........................... Passed 0.80 sec Start 305: plm-reg-itk-demons-sym-logd -254/571 Test #279: plm-reg-align-center-stats ............ Passed 0.69 sec +253/571 Test #272: plm-multiply-a-stats .................. Passed 0.72 sec Start 308: plm-bsp-mse-c-stats -255/571 Test #287: plm-reg-itk-rigid-a-stats-2 ........... Passed 0.68 sec +254/571 Test #279: plm-reg-align-center-stats ............ Passed 0.71 sec Start 311: plm-bsp-mse-g-stats -256/571 Test #282: plm-reg-itk-translation-stats ......... Passed 0.81 sec +255/571 Test #208: plm-convert-prefix-fcsv ............... Passed 2.34 sec Start 314: plm-bsp-mse-h-stats -257/571 Test #285: plm-reg-itk-rigid-a-stats-1 ........... Passed 0.74 sec +256/571 Test #290: plm-reg-itk-similarity-stats-1 ........ Passed 0.42 sec Start 317: plm-bsp-mse-i-stats -258/571 Test #290: plm-reg-itk-similarity-stats-1 ........ Passed 0.65 sec +257/571 Test #552: proton-dose-4a ........................ Passed 6.39 sec Start 320: plm-bsp-mse-k-stats -259/571 Test #292: plm-reg-itk-similarity-stats-2 ........ Passed 0.67 sec +258/571 Test #285: plm-reg-itk-rigid-a-stats-1 ........... Passed 0.91 sec Start 323: plm-bsp-mse-l-stats -260/571 Test #555: proton-dose-4d ........................ Passed 7.73 sec +259/571 Test #295: plm-reg-itk-bspline-stats-1 ........... Passed 0.56 sec Start 325: plm-bsp-mse-o -261/571 Test #299: plm-reg-itk-demons-stats-2 ............ Passed 0.59 sec +260/571 Test #292: plm-reg-itk-similarity-stats-2 ........ Passed 0.70 sec Start 327: plm-bsp-mse-p -262/571 Test #295: plm-reg-itk-bspline-stats-1 ........... Passed 0.78 sec +261/571 Test #311: plm-bsp-mse-g-stats ................... Passed 0.50 sec Start 329: plm-bsp-mse-q -263/571 Test #308: plm-bsp-mse-c-stats ................... Passed 0.75 sec +262/571 Test #308: plm-bsp-mse-c-stats ................... Passed 0.54 sec Start 331: plm-bsp-mse-r -264/571 Test #317: plm-bsp-mse-i-stats ................... Passed 0.60 sec +263/571 Test #299: plm-reg-itk-demons-stats-2 ............ Passed 0.64 sec Start 334: plm-bsp-mi-c-stats -265/571 Test #320: plm-bsp-mse-k-stats ................... Passed 0.64 sec +264/571 Test #314: plm-bsp-mse-h-stats ................... Passed 0.66 sec Start 337: plm-bsp-mi-c-2-stats -266/571 Test #314: plm-bsp-mse-h-stats ................... Passed 0.71 sec +265/571 Test #320: plm-bsp-mse-k-stats ................... Passed 0.65 sec Start 340: plm-bsp-mi-k-stats -267/571 Test #311: plm-bsp-mse-g-stats ................... Passed 0.83 sec +266/571 Test #317: plm-bsp-mse-i-stats ................... Passed 0.71 sec Start 343: plm-bsp-gm-k-stats -268/571 Test #323: plm-bsp-mse-l-stats ................... Passed 0.72 sec +267/571 Test #323: plm-bsp-mse-l-stats ................... Passed 0.61 sec Start 345: plm-bsp-sm-multi-a -269/571 Test #558: proton-dose-5a ........................ Passed 8.67 sec +268/571 Test #334: plm-bsp-mi-c-stats .................... Passed 0.40 sec Start 348: plm-bsp-openmp-stats -270/571 Test #325: plm-bsp-mse-o ......................... Passed 0.98 sec +269/571 Test #429: plm-reg-trans-mi-a .................... Passed 10.43 sec Start 350: plm-bsp-resume -271/571 Test #327: plm-bsp-mse-p ......................... Passed 0.99 sec +270/571 Test #329: plm-bsp-mse-q ......................... Passed 0.80 sec Start 352: plm-bsp-logfile -272/571 Test #329: plm-bsp-mse-q ......................... Passed 1.15 sec +271/571 Test #325: plm-bsp-mse-o ......................... Passed 0.92 sec Start 355: plm-bsp-ushort-stats -273/571 Test #334: plm-bsp-mi-c-stats .................... Passed 0.88 sec +272/571 Test #327: plm-bsp-mse-p ......................... Passed 0.94 sec Start 358: plm-bsp-double-stats -274/571 Test #340: plm-bsp-mi-k-stats .................... Passed 0.79 sec +273/571 Test #337: plm-bsp-mi-c-2-stats .................. Passed 0.76 sec Start 362: plm-bsp-char-output-stats -275/571 Test #337: plm-bsp-mi-c-2-stats .................. Passed 0.94 sec +274/571 Test #343: plm-bsp-gm-k-stats .................... Passed 0.72 sec Start 364: plm-bsp-rect -276/571 Test #343: plm-bsp-gm-k-stats .................... Passed 0.85 sec +275/571 Test #340: plm-bsp-mi-k-stats .................... Passed 0.92 sec Start 366: plm-bsp-regularize-none-stats -277/571 Test #348: plm-bsp-openmp-stats .................. Passed 0.80 sec +276/571 Test #348: plm-bsp-openmp-stats .................. Passed 0.92 sec Start 369: plm-bsp-regularize-analytic-stats -278/571 Test #331: plm-bsp-mse-r ......................... Passed 1.36 sec +277/571 Test #331: plm-bsp-mse-r ......................... Passed 1.40 sec Start 372: plm-bsp-regularize-numeric-stats -279/571 Test #345: plm-bsp-sm-multi-a .................... Passed 1.47 sec +278/571 Test #355: plm-bsp-ushort-stats .................. Passed 0.60 sec Start 376: plm-bsp-landmark-b-stats -280/571 Test #362: plm-bsp-char-output-stats ............. Passed 0.81 sec +279/571 Test #362: plm-bsp-char-output-stats ............. Passed 0.77 sec Start 379: plm-bsp-landmark-c-stats -281/571 Test #303: plm-reg-itk-demons-logd ............... Passed 2.69 sec +280/571 Test #345: plm-bsp-sm-multi-a .................... Passed 1.37 sec Start 382: plm-bsp-landmark-d-stats -282/571 Test #358: plm-bsp-double-stats .................. Passed 0.86 sec +281/571 Test #358: plm-bsp-double-stats .................. Passed 0.91 sec Start 385: plm-bsp-landmark-e-stats -283/571 Test #350: plm-bsp-resume ........................ Passed 1.34 sec +282/571 Test #303: plm-reg-itk-demons-logd ............... Passed 2.61 sec Start 388: plm-bsp-dcos-a-stats -284/571 Test #301: plm-reg-itk-demons-diff ............... Passed 2.86 sec +283/571 Test #372: plm-bsp-regularize-numeric-stats ...... Passed 0.73 sec Start 391: plm-bsp-dcos-b-stats -285/571 Test #369: plm-bsp-regularize-analytic-stats ..... Passed 0.62 sec +284/571 Test #352: plm-bsp-logfile ....................... Passed 1.39 sec Start 394: plm-bsp-dcos-c-stats -286/571 Test #355: plm-bsp-ushort-stats .................. Passed 1.14 sec +285/571 Test #301: plm-reg-itk-demons-diff ............... Passed 2.80 sec Start 397: plm-bsp-dcos-d-stats -287/571 Test #372: plm-bsp-regularize-numeric-stats ...... Passed 0.69 sec +286/571 Test #364: plm-bsp-rect .......................... Passed 1.20 sec Start 400: plm-bsp-dcos-e-stats -288/571 Test #366: plm-bsp-regularize-none-stats ......... Passed 1.07 sec +287/571 Test #350: plm-bsp-resume ........................ Passed 1.49 sec Start 403: plm-bsp-dcos-f-stats -289/571 Test #352: plm-bsp-logfile ....................... Passed 1.55 sec +288/571 Test #376: plm-bsp-landmark-b-stats .............. Passed 0.83 sec Start 406: plm-reg-multi-a-stats -290/571 Test #376: plm-bsp-landmark-b-stats .............. Passed 0.60 sec +289/571 Test #382: plm-bsp-landmark-d-stats .............. Passed 0.58 sec Start 409: plm-reg-multi-b-stats -291/571 Test #564: proton-dose-6a ........................ Passed 10.47 sec +290/571 Test #385: plm-bsp-landmark-e-stats .............. Passed 0.62 sec Start 412: plm-reg-dv-itk-translation-stats -292/571 Test #364: plm-bsp-rect .......................... Passed 1.40 sec +291/571 Test #366: plm-bsp-regularize-none-stats ......... Passed 1.23 sec Start 421: plm-reg-process-a-stats -293/571 Test #388: plm-bsp-dcos-a-stats .................. Passed 0.62 sec +292/571 Test #369: plm-bsp-regularize-analytic-stats ..... Passed 1.09 sec Start 424: plm-reg-trans-a-stats -294/571 Test #379: plm-bsp-landmark-c-stats .............. Passed 0.85 sec +293/571 Test #379: plm-bsp-landmark-c-stats .............. Passed 0.88 sec Start 427: plm-reg-trans-b-stats -295/571 Test #385: plm-bsp-landmark-e-stats .............. Passed 0.82 sec +294/571 Test #555: proton-dose-4d ........................ Passed 9.34 sec Start 430: plm-reg-trans-mi-a-stats -296/571 Test #397: plm-bsp-dcos-d-stats .................. Passed 0.62 sec +295/571 Test #388: plm-bsp-dcos-a-stats .................. Passed 0.62 sec Start 433: plm-reg-autores-a-stats -297/571 Test #400: plm-bsp-dcos-e-stats .................. Passed 0.62 sec +296/571 Test #564: proton-dose-6a ........................ Passed 9.33 sec Start 436: plm-reg-autores-b-stats -298/571 Test #382: plm-bsp-landmark-d-stats .............. Passed 0.92 sec +297/571 Test #391: plm-bsp-dcos-b-stats .................. Passed 0.59 sec Start 442: plm-compose-a-stats -299/571 Test #394: plm-bsp-dcos-c-stats .................. Passed 0.77 sec +298/571 Test #406: plm-reg-multi-a-stats ................. Passed 0.52 sec Start 446: plm-compose-b-stats -300/571 Test #409: plm-reg-multi-b-stats ................. Passed 0.40 sec +299/571 Test #394: plm-bsp-dcos-c-stats .................. Passed 0.68 sec Start 450: plm-compose-c-stats -301/571 Test #403: plm-bsp-dcos-f-stats .................. Passed 0.62 sec +300/571 Test #403: plm-bsp-dcos-f-stats .................. Passed 0.64 sec Start 453: plm-resample-a-stats -302/571 Test #391: plm-bsp-dcos-b-stats .................. Passed 0.93 sec +301/571 Test #397: plm-bsp-dcos-d-stats .................. Passed 0.71 sec Start 456: plm-resample-b-stats -303/571 Test #406: plm-reg-multi-a-stats ................. Passed 0.70 sec +302/571 Test #409: plm-reg-multi-b-stats ................. Passed 0.63 sec Start 459: plm-resample-c-stats -304/571 Test #305: plm-reg-itk-demons-sym-logd ........... Passed 3.69 sec +303/571 Test #400: plm-bsp-dcos-e-stats .................. Passed 0.77 sec Start 462: plm-scale-a-stats -305/571 Test #424: plm-reg-trans-a-stats ................. Passed 0.55 sec +304/571 Test #305: plm-reg-itk-demons-sym-logd ........... Passed 3.61 sec Start 465: plm-scale-vf-a-stats -306/571 Test #446: plm-compose-b-stats ................... Passed 0.45 sec +305/571 Test #412: plm-reg-dv-itk-translation-stats ...... Passed 0.67 sec Start 467: plm-sift-a -307/571 Test #421: plm-reg-process-a-stats ............... Passed 0.74 sec +306/571 Test #442: plm-compose-a-stats ................... Passed 0.36 sec Start 471: plm-thumbnail-a-stats -308/571 Test #427: plm-reg-trans-b-stats ................. Passed 0.60 sec +307/571 Test #421: plm-reg-process-a-stats ............... Passed 0.68 sec Start 474: plm-thumbnail-b-stats -309/571 Test #433: plm-reg-autores-a-stats ............... Passed 0.56 sec +308/571 Test #424: plm-reg-trans-a-stats ................. Passed 0.68 sec Start 477: plm-thumbnail-c-stats -310/571 Test #412: plm-reg-dv-itk-translation-stats ...... Passed 0.87 sec +309/571 Test #427: plm-reg-trans-b-stats ................. Passed 0.59 sec Start 480: plm-intersect-stats -311/571 Test #436: plm-reg-autores-b-stats ............... Passed 0.62 sec +310/571 Test #561: proton-dose-5d ........................ Passed 9.88 sec Start 483: plm-union-stats -312/571 Test #430: plm-reg-trans-mi-a-stats .............. Passed 0.80 sec +311/571 Test #436: plm-reg-autores-b-stats ............... Passed 0.56 sec Start 486: plm-threshold-a-stats -313/571 Test #450: plm-compose-c-stats ................... Passed 0.71 sec +312/571 Test #433: plm-reg-autores-a-stats ............... Passed 0.64 sec Start 489: plm-threshold-b-stats -314/571 Test #442: plm-compose-a-stats ................... Passed 0.77 sec +313/571 Test #453: plm-resample-a-stats .................. Passed 0.45 sec Start 492: plm-threshold-c-stats -315/571 Test #456: plm-resample-b-stats .................. Passed 0.62 sec +314/571 Test #430: plm-reg-trans-mi-a-stats .............. Passed 0.74 sec Start 498: plm-warp-a-stats -316/571 Test #459: plm-resample-c-stats .................. Passed 0.65 sec +315/571 Test #446: plm-compose-b-stats ................... Passed 0.71 sec Start 501: plm-warp-b-stats-1 -317/571 Test #453: plm-resample-a-stats .................. Passed 0.78 sec +316/571 Test #459: plm-resample-c-stats .................. Passed 0.58 sec Start 503: plm-warp-b-stats-2 -318/571 Test #465: plm-scale-vf-a-stats .................. Passed 0.51 sec +317/571 Test #456: plm-resample-b-stats .................. Passed 0.64 sec Start 506: plm-warp-c-stats -319/571 Test #462: plm-scale-a-stats ..................... Passed 0.76 sec +318/571 Test #450: plm-compose-c-stats ................... Passed 0.72 sec Start 509: plm-warp-d-stats -320/571 Test #471: plm-thumbnail-a-stats ................. Passed 0.63 sec +319/571 Test #474: plm-thumbnail-b-stats ................. Passed 0.48 sec Start 512: plm-warp-f-stats-1 -321/571 Test #477: plm-thumbnail-c-stats ................. Passed 0.61 sec +320/571 Test #480: plm-intersect-stats ................... Passed 0.51 sec Start 515: plm-warp-g-stats-1 -322/571 Test #474: plm-thumbnail-b-stats ................. Passed 0.64 sec +321/571 Test #462: plm-scale-a-stats ..................... Passed 0.74 sec Start 518: plm-warp-h-stats-1 -323/571 Test #480: plm-intersect-stats ................... Passed 0.67 sec +322/571 Test #471: plm-thumbnail-a-stats ................. Passed 0.66 sec Start 521: plm-warp-i-stats-1 -324/571 Test #506: plm-warp-c-stats ...................... Passed 0.46 sec +323/571 Test #465: plm-scale-vf-a-stats .................. Passed 0.73 sec Start 524: plm-xf-convert-b -325/571 Test #489: plm-threshold-b-stats ................. Passed 0.63 sec +324/571 Test #489: plm-threshold-b-stats ................. Passed 0.51 sec Start 528: plm-xf-convert-d-warp-1-stats -326/571 Test #486: plm-threshold-a-stats ................. Passed 0.69 sec +325/571 Test #477: plm-thumbnail-c-stats ................. Passed 0.72 sec Start 531: plm-xf-convert-d-warp-2-stats -327/571 Test #492: plm-threshold-c-stats ................. Passed 0.66 sec +326/571 Test #486: plm-threshold-a-stats ................. Passed 0.65 sec Start 537: plm-xf-convert-h-stats -328/571 Test #498: plm-warp-a-stats ...................... Passed 0.67 sec +327/571 Test #483: plm-union-stats ....................... Passed 0.77 sec Start 540: xf-invert-vf-zero-1-stats -329/571 Test #483: plm-union-stats ....................... Passed 0.91 sec +328/571 Test #498: plm-warp-a-stats ...................... Passed 0.69 sec Start 543: xf-invert-vf-trans-1-stats -330/571 Test #561: proton-dose-5d ........................ Passed 12.41 sec +329/571 Test #512: plm-warp-f-stats-1 .................... Passed 0.46 sec Start 545: xf-invert-vrs-a -331/571 Test #501: plm-warp-b-stats-1 .................... Passed 0.83 sec +330/571 Test #506: plm-warp-c-stats ...................... Passed 0.55 sec Start 547: xf-invert-vrs-b -332/571 Test #503: plm-warp-b-stats-2 .................... Passed 0.80 sec +331/571 Test #492: plm-threshold-c-stats ................. Passed 0.78 sec Start 550: proton-dose-1-stats -333/571 Test #512: plm-warp-f-stats-1 .................... Passed 0.66 sec +332/571 Test #503: plm-warp-b-stats-2 .................... Passed 0.62 sec Start 553: proton-dose-4a-stats -334/571 Test #518: plm-warp-h-stats-1 .................... Passed 0.67 sec +333/571 Test #501: plm-warp-b-stats-1 .................... Passed 0.67 sec Start 556: proton-dose-4d-stats -335/571 Test #509: plm-warp-d-stats ...................... Passed 0.91 sec +334/571 Test #524: plm-xf-convert-b ...................... Passed 0.44 sec Start 559: proton-dose-5a-stats -336/571 Test #524: plm-xf-convert-b ...................... Passed 0.56 sec +335/571 Test #509: plm-warp-d-stats ...................... Passed 0.67 sec Start 562: proton-dose-5d-stats -337/571 Test #531: plm-xf-convert-d-warp-2-stats ......... Passed 0.53 sec +336/571 Test #518: plm-warp-h-stats-1 .................... Passed 0.53 sec Start 565: proton-dose-6a-stats -338/571 Test #528: plm-xf-convert-d-warp-1-stats ......... Passed 0.58 sec +337/571 Test #515: plm-warp-g-stats-1 .................... Passed 0.72 sec Start 567: proton-dose-8d -339/571 Test #521: plm-warp-i-stats-1 .................... Passed 0.71 sec +338/571 Test #521: plm-warp-i-stats-1 .................... Passed 0.67 sec Start 569: wed-a -340/571 Test #515: plm-warp-g-stats-1 .................... Passed 0.86 sec +339/571 Test #545: xf-invert-vrs-a ....................... Passed 0.45 sec Start 16: gauss-7 -341/571 Test #537: plm-xf-convert-h-stats ................ Passed 0.63 sec +340/571 Test #531: plm-xf-convert-d-warp-2-stats ......... Passed 0.69 sec Start 23: gw-lung-a -342/571 Test #545: xf-invert-vrs-a ....................... Passed 0.57 sec +341/571 Test #547: xf-invert-vrs-b ....................... Passed 0.45 sec Start 24: gw-lung-b -343/571 Test #540: xf-invert-vf-zero-1-stats ............. Passed 0.79 sec +342/571 Test #537: plm-xf-convert-h-stats ................ Passed 0.63 sec Start 25: gw-lung-c -344/571 Test #543: xf-invert-vf-trans-1-stats ............ Passed 0.82 sec +343/571 Test #528: plm-xf-convert-d-warp-1-stats ......... Passed 0.78 sec Start 34: rect-6 -345/571 Test #547: xf-invert-vrs-b ....................... Passed 0.70 sec +344/571 Test #543: xf-invert-vf-trans-1-stats ............ Passed 0.57 sec Start 35: rect-7 -346/571 Test #23: gw-lung-a ............................. Passed 0.35 sec +345/571 Test #540: xf-invert-vf-zero-1-stats ............. Passed 0.76 sec Start 40: rect-10-roi-2 -347/571 Test #553: proton-dose-4a-stats .................. Passed 0.71 sec +346/571 Test #550: proton-dose-1-stats ................... Passed 0.73 sec Start 49: rect-18 -348/571 Test #556: proton-dose-4d-stats .................. Passed 0.68 sec +347/571 Test #553: proton-dose-4a-stats .................. Passed 0.73 sec Start 59: rgc-1 -349/571 Test #16: gauss-7 ............................... Passed 0.53 sec +348/571 Test #556: proton-dose-4d-stats .................. Passed 0.75 sec Start 68: xramp-1 -350/571 Test #550: proton-dose-1-stats ................... Passed 0.86 sec +349/571 Test #562: proton-dose-5d-stats .................. Passed 0.68 sec Start 69: yramp-1 -351/571 Test #559: proton-dose-5a-stats .................. Passed 0.68 sec +350/571 Test #559: proton-dose-5a-stats .................. Passed 0.74 sec Start 70: zramp-1 -352/571 Test #562: proton-dose-5d-stats .................. Passed 0.70 sec +351/571 Test #565: proton-dose-6a-stats .................. Passed 0.75 sec Start 75: vf-gaussian-1 -353/571 Test #565: proton-dose-6a-stats .................. Passed 0.74 sec +352/571 Test #34: rect-6 ................................ Passed 0.51 sec Start 77: vf-zero-check -354/571 Test #77: vf-zero-check ......................... Passed 0.08 sec +353/571 Test #16: gauss-7 ............................... Passed 0.62 sec Start 79: vf-trans-1-check -355/571 Test #24: gw-lung-b ............................. Passed 0.63 sec +354/571 Test #35: rect-7 ................................ Passed 0.58 sec Start 81: vf-trans-2-check -356/571 Test #35: rect-7 ................................ Passed 0.46 sec +355/571 Test #77: vf-zero-check ......................... Passed 0.10 sec Start 83: vf-radial-1-check -357/571 Test #79: vf-trans-1-check ...................... Passed 0.09 sec +356/571 Test #23: gw-lung-a ............................. Passed 0.69 sec Start 85: plm-compare-a-check -358/571 Test #83: vf-radial-1-check ..................... Passed 0.06 sec +357/571 Test #24: gw-lung-b ............................. Passed 0.69 sec Start 87: plm-compare-b-check -359/571 Test #34: rect-6 ................................ Passed 0.56 sec +358/571 Test #79: vf-trans-1-check ...................... Passed 0.12 sec Start 89: plm-compare-c-check -360/571 Test #81: vf-trans-2-check ...................... Passed 0.10 sec +359/571 Test #81: vf-trans-2-check ...................... Passed 0.07 sec Start 92: plm-diff-a-check -361/571 Test #85: plm-compare-a-check ................... Passed 0.07 sec +360/571 Test #83: vf-radial-1-check ..................... Passed 0.07 sec Start 95: plm-diff-b-check -362/571 Test #87: plm-compare-b-check ................... Passed 0.07 sec +361/571 Test #85: plm-compare-a-check ................... Passed 0.07 sec Start 97: demons-a-check -363/571 Test #25: gw-lung-c ............................. Passed 0.73 sec +362/571 Test #25: gw-lung-c ............................. Passed 0.76 sec Start 100: drr-a-check -364/571 Test #59: rgc-1 ................................. Passed 0.47 sec +363/571 Test #87: plm-compare-b-check ................... Passed 0.10 sec Start 103: drr-b-check -365/571 Test #92: plm-diff-a-check ...................... Passed 0.08 sec +364/571 Test #89: plm-compare-c-check ................... Passed 0.10 sec Start 106: drr-c-check -366/571 Test #68: xramp-1 ............................... Passed 0.47 sec +365/571 Test #95: plm-diff-b-check ...................... Passed 0.09 sec Start 109: fdk-cpu-a-check -367/571 Test #89: plm-compare-c-check ................... Passed 0.13 sec +366/571 Test #92: plm-diff-a-check ...................... Passed 0.13 sec Start 112: fdk-cpu-d-check -368/571 Test #49: rect-18 ............................... Passed 0.54 sec +367/571 Test #97: demons-a-check ........................ Passed 0.11 sec Start 115: landmark-warp-a-check-1 -369/571 Test #97: demons-a-check ........................ Passed 0.10 sec +368/571 Test #100: drr-a-check ........................... Passed 0.10 sec Start 117: landmark-warp-a-check-2 -370/571 Test #95: plm-diff-b-check ...................... Passed 0.13 sec +369/571 Test #103: drr-b-check ........................... Passed 0.10 sec Start 120: landmark-warp-b-check-1 -371/571 Test #103: drr-b-check ........................... Passed 0.10 sec +370/571 Test #567: proton-dose-8d ........................ Passed 1.07 sec Start 122: landmark-warp-b-check-2 -372/571 Test #40: rect-10-roi-2 ......................... Passed 0.69 sec +371/571 Test #106: drr-c-check ........................... Passed 0.12 sec Start 125: landmark-warp-c-check-1 -373/571 Test #100: drr-a-check ........................... Passed 0.15 sec +372/571 Test #109: fdk-cpu-a-check ....................... Passed 0.12 sec Start 127: landmark-warp-c-check-2 -374/571 Test #69: yramp-1 ............................... Passed 0.59 sec +373/571 Test #112: fdk-cpu-d-check ....................... Passed 0.12 sec Start 128: landmark-warp-d -375/571 Test #106: drr-c-check ........................... Passed 0.15 sec +374/571 Test #40: rect-10-roi-2 ......................... Passed 0.73 sec Start 131: plm-add-a-check -376/571 Test #109: fdk-cpu-a-check ....................... Passed 0.16 sec +375/571 Test #59: rgc-1 ................................. Passed 0.68 sec Start 134: plm-add-b-check -377/571 Test #112: fdk-cpu-d-check ....................... Passed 0.15 sec +376/571 Test #117: landmark-warp-a-check-2 ............... Passed 0.13 sec Start 137: plm-add-vf-a-check -378/571 Test #75: vf-gaussian-1 ......................... Passed 0.56 sec +377/571 Test #115: landmark-warp-a-check-1 ............... Passed 0.16 sec Start 140: plm-add-vf-b-check -379/571 Test #115: landmark-warp-a-check-1 ............... Passed 0.16 sec +378/571 Test #49: rect-18 ............................... Passed 0.74 sec Start 143: plm-adjust-a-check -380/571 Test #117: landmark-warp-a-check-2 ............... Passed 0.16 sec +379/571 Test #120: landmark-warp-b-check-1 ............... Passed 0.16 sec Start 146: plm-adjust-b-check -381/571 Test #567: proton-dose-8d ........................ Passed 1.27 sec +380/571 Test #75: vf-gaussian-1 ......................... Passed 0.61 sec Start 149: plm-adjust-c-check -382/571 Test #120: landmark-warp-b-check-1 ............... Passed 0.18 sec +381/571 Test #68: xramp-1 ............................... Passed 0.72 sec Start 152: plm-adjust-d-check -383/571 Test #122: landmark-warp-b-check-2 ............... Passed 0.18 sec +382/571 Test #122: landmark-warp-b-check-2 ............... Passed 0.19 sec Start 155: plm-adjust-e-check -384/571 Test #125: landmark-warp-c-check-1 ............... Passed 0.17 sec +383/571 Test #69: yramp-1 ............................... Passed 0.73 sec Start 158: plm-adjust-f-check -385/571 Test #127: landmark-warp-c-check-2 ............... Passed 0.17 sec +384/571 Test #70: zramp-1 ............................... Passed 0.71 sec Start 161: plm-adjust-g-check -386/571 Test #131: plm-add-a-check ....................... Passed 0.16 sec +385/571 Test #125: landmark-warp-c-check-1 ............... Passed 0.22 sec Start 164: plm-adjust-h-check -387/571 Test #134: plm-add-b-check ....................... Passed 0.16 sec +386/571 Test #127: landmark-warp-c-check-2 ............... Passed 0.22 sec Start 167: plm-adjust-i-check -388/571 Test #137: plm-add-vf-a-check .................... Passed 0.17 sec +387/571 Test #131: plm-add-a-check ....................... Passed 0.20 sec Start 170: plm-adjust-j-check -389/571 Test #143: plm-adjust-a-check .................... Passed 0.16 sec +388/571 Test #134: plm-add-b-check ....................... Passed 0.20 sec Start 173: plm-boundary-a-check -390/571 Test #140: plm-add-vf-b-check .................... Passed 0.18 sec +389/571 Test #137: plm-add-vf-a-check .................... Passed 0.21 sec Start 176: plm-boundary-b-check -391/571 Test #146: plm-adjust-b-check .................... Passed 0.17 sec +390/571 Test #140: plm-add-vf-b-check .................... Passed 0.21 sec Start 179: plm-boundary-c-check -392/571 Test #70: zramp-1 ............................... Passed 0.82 sec +391/571 Test #143: plm-adjust-a-check .................... Passed 0.21 sec Start 182: plm-boundary-d-check -393/571 Test #149: plm-adjust-c-check .................... Passed 0.19 sec +392/571 Test #146: plm-adjust-b-check .................... Passed 0.21 sec Start 185: plm-boundary-e-check -394/571 Test #152: plm-adjust-d-check .................... Passed 0.20 sec +393/571 Test #149: plm-adjust-c-check .................... Passed 0.21 sec Start 188: plm-convert-dicom-a-check -395/571 Test #155: plm-adjust-e-check .................... Passed 0.20 sec +394/571 Test #152: plm-adjust-d-check .................... Passed 0.21 sec Start 191: plm-convert-dicom-b-check -396/571 Test #158: plm-adjust-f-check .................... Passed 0.22 sec +395/571 Test #155: plm-adjust-e-check .................... Passed 0.21 sec Start 194: plm-convert-dicom-c-check -397/571 Test #161: plm-adjust-g-check .................... Passed 0.22 sec +396/571 Test #158: plm-adjust-f-check .................... Passed 0.21 sec Start 195: plm-convert-dicom-d -398/571 Test #164: plm-adjust-h-check .................... Passed 0.21 sec +397/571 Test #161: plm-adjust-g-check .................... Passed 0.21 sec Start 196: plm-convert-dicom-e -399/571 Test #167: plm-adjust-i-check .................... Passed 0.21 sec +398/571 Test #164: plm-adjust-h-check .................... Passed 0.22 sec Start 197: plm-convert-dicom-f -400/571 Test #170: plm-adjust-j-check .................... Passed 0.20 sec +399/571 Test #167: plm-adjust-i-check .................... Passed 0.22 sec Start 200: plm-convert-dicom-donut-a-check -401/571 Test #173: plm-boundary-a-check .................. Passed 0.20 sec +400/571 Test #170: plm-adjust-j-check .................... Passed 0.22 sec Start 203: plm-convert-dicom-donut-b-check -402/571 Test #176: plm-boundary-b-check .................. Passed 0.20 sec +401/571 Test #173: plm-boundary-a-check .................. Passed 0.21 sec Start 204: plm-convert-dicom-donut-c -403/571 Test #179: plm-boundary-c-check .................. Passed 0.21 sec +402/571 Test #176: plm-boundary-b-check .................. Passed 0.21 sec Start 207: plm-convert-cxt-check -404/571 Test #182: plm-boundary-d-check .................. Passed 0.20 sec +403/571 Test #179: plm-boundary-c-check .................. Passed 0.19 sec Start 211: plm-convert-dose-scale-check -405/571 Test #185: plm-boundary-e-check .................. Passed 0.19 sec +404/571 Test #182: plm-boundary-d-check .................. Passed 0.20 sec Start 214: plm-crop-a-check-1 -406/571 Test #188: plm-convert-dicom-a-check ............. Passed 0.19 sec +405/571 Test #185: plm-boundary-e-check .................. Passed 0.20 sec Start 217: plm-crop-b-check-1 -407/571 Test #191: plm-convert-dicom-b-check ............. Passed 0.18 sec +406/571 Test #188: plm-convert-dicom-a-check ............. Passed 0.21 sec Start 220: plm-crop-c-check-1 -408/571 Test #194: plm-convert-dicom-c-check ............. Passed 0.18 sec +407/571 Test #191: plm-convert-dicom-b-check ............. Passed 0.22 sec Start 222: plm-dice-a-check-1 -409/571 Test #200: plm-convert-dicom-donut-a-check ....... Passed 0.13 sec +408/571 Test #194: plm-convert-dicom-c-check ............. Passed 0.20 sec Start 224: plm-dice-b-check-1 -410/571 Test #203: plm-convert-dicom-donut-b-check ....... Passed 0.13 sec +409/571 Test #200: plm-convert-dicom-donut-a-check ....... Passed 0.15 sec Start 226: plm-dice-c-check-1 -411/571 Test #207: plm-convert-cxt-check ................. Passed 0.11 sec +410/571 Test #203: plm-convert-dicom-donut-b-check ....... Passed 0.15 sec Start 227: plm-dice-c-check-2 -412/571 Test #211: plm-convert-dose-scale-check .......... Passed 0.13 sec +411/571 Test #207: plm-convert-cxt-check ................. Passed 0.15 sec Start 228: plm-dice-c-check-3 -413/571 Test #217: plm-crop-b-check-1 .................... Passed 0.11 sec +412/571 Test #211: plm-convert-dose-scale-check .......... Passed 0.16 sec Start 229: plm-dice-c-check-4 -414/571 Test #214: plm-crop-a-check-1 .................... Passed 0.14 sec +413/571 Test #214: plm-crop-a-check-1 .................... Passed 0.16 sec Start 230: plm-dice-c-check-5 -415/571 Test #220: plm-crop-c-check-1 .................... Passed 0.12 sec +414/571 Test #217: plm-crop-b-check-1 .................... Passed 0.14 sec Start 232: plm-dice-d-check-1 -416/571 Test #222: plm-dice-a-check-1 .................... Passed 0.12 sec +415/571 Test #220: plm-crop-c-check-1 .................... Passed 0.15 sec Start 233: plm-dice-d-check-2 -417/571 Test #224: plm-dice-b-check-1 .................... Passed 0.12 sec +416/571 Test #222: plm-dice-a-check-1 .................... Passed 0.14 sec Start 234: plm-dice-d-check-3 -418/571 Test #128: landmark-warp-d ....................... Passed 0.68 sec +417/571 Test #224: plm-dice-b-check-1 .................... Passed 0.15 sec Start 235: plm-dice-d-check-4 -419/571 Test #226: plm-dice-c-check-1 .................... Passed 0.14 sec +418/571 Test #226: plm-dice-c-check-1 .................... Passed 0.15 sec Start 236: plm-dice-d-check-5 -420/571 Test #227: plm-dice-c-check-2 .................... Passed 0.14 sec +419/571 Test #227: plm-dice-c-check-2 .................... Passed 0.16 sec Start 238: plm-dice-e-check-1 -421/571 Test #228: plm-dice-c-check-3 .................... Passed 0.13 sec +420/571 Test #228: plm-dice-c-check-3 .................... Passed 0.15 sec Start 239: plm-dice-e-check-2 -422/571 Test #229: plm-dice-c-check-4 .................... Passed 0.14 sec +421/571 Test #230: plm-dice-c-check-5 .................... Passed 0.13 sec Start 241: plm-dice-f-check-1 -423/571 Test #230: plm-dice-c-check-5 .................... Passed 0.14 sec +422/571 Test #229: plm-dice-c-check-4 .................... Passed 0.16 sec Start 242: plm-dice-f-check-2 -424/571 Test #232: plm-dice-d-check-1 .................... Passed 0.14 sec +423/571 Test #232: plm-dice-d-check-1 .................... Passed 0.14 sec Start 243: plm-dmap-a -425/571 Test #233: plm-dice-d-check-2 .................... Passed 0.14 sec +424/571 Test #128: landmark-warp-d ....................... Passed 0.81 sec Start 245: plm-dmap-c -426/571 Test #234: plm-dice-d-check-3 .................... Passed 0.14 sec +425/571 Test #233: plm-dice-d-check-2 .................... Passed 0.15 sec Start 247: plm-dvh-a-check-1 -427/571 Test #235: plm-dice-d-check-4 .................... Passed 0.14 sec +426/571 Test #234: plm-dice-d-check-3 .................... Passed 0.16 sec Start 248: plm-dvh-a-check-2 -428/571 Test #236: plm-dice-d-check-5 .................... Passed 0.14 sec +427/571 Test #235: plm-dice-d-check-4 .................... Passed 0.16 sec Start 250: plm-dvh-b-check-1 -429/571 Test #238: plm-dice-e-check-1 .................... Passed 0.13 sec +428/571 Test #236: plm-dice-d-check-5 .................... Passed 0.17 sec Start 251: plm-dvh-b-check-2 -430/571 Test #239: plm-dice-e-check-2 .................... Passed 0.14 sec +429/571 Test #238: plm-dice-e-check-1 .................... Passed 0.16 sec Start 254: plm-fill-a-check -431/571 Test #241: plm-dice-f-check-1 .................... Passed 0.14 sec +430/571 Test #239: plm-dice-e-check-2 .................... Passed 0.16 sec Start 257: plm-mask-a-check -432/571 Test #242: plm-dice-f-check-2 .................... Passed 0.14 sec +431/571 Test #195: plm-convert-dicom-d ................... Passed 0.57 sec Start 260: plm-gamma-a-check -433/571 Test #247: plm-dvh-a-check-1 ..................... Passed 0.11 sec +432/571 Test #241: plm-dice-f-check-1 .................... Passed 0.18 sec Start 263: plm-gamma-b-check -434/571 Test #248: plm-dvh-a-check-2 ..................... Passed 0.10 sec +433/571 Test #242: plm-dice-f-check-2 .................... Passed 0.19 sec Start 265: plm-gamma-c-check -435/571 Test #250: plm-dvh-b-check-1 ..................... Passed 0.11 sec +434/571 Test #197: plm-convert-dicom-f ................... Passed 0.59 sec Start 267: plm-gamma-d-check -436/571 Test #251: plm-dvh-b-check-2 ..................... Passed 0.12 sec +435/571 Test #247: plm-dvh-a-check-1 ..................... Passed 0.17 sec Start 270: plm-maximum-a-check -437/571 Test #254: plm-fill-a-check ...................... Passed 0.12 sec +436/571 Test #248: plm-dvh-a-check-2 ..................... Passed 0.17 sec Start 273: plm-multiply-a-check -438/571 Test #195: plm-convert-dicom-d ................... Passed 0.62 sec +437/571 Test #250: plm-dvh-b-check-1 ..................... Passed 0.18 sec Start 276: plm-multiply-vf-a-check -439/571 Test #260: plm-gamma-a-check ..................... Passed 0.11 sec +438/571 Test #251: plm-dvh-b-check-2 ..................... Passed 0.18 sec Start 277: plm-usage -440/571 Test #263: plm-gamma-b-check ..................... Passed 0.11 sec +439/571 Test #254: plm-fill-a-check ...................... Passed 0.17 sec Start 280: plm-reg-align-center-check -441/571 Test #257: plm-mask-a-check ...................... Passed 0.15 sec +440/571 Test #257: plm-mask-a-check ...................... Passed 0.18 sec Start 283: plm-reg-itk-translation-check -442/571 Test #265: plm-gamma-c-check ..................... Passed 0.14 sec +441/571 Test #260: plm-gamma-a-check ..................... Passed 0.18 sec Start 286: plm-reg-itk-rigid-a-check-1 -443/571 Test #267: plm-gamma-d-check ..................... Passed 0.13 sec +442/571 Test #263: plm-gamma-b-check ..................... Passed 0.18 sec Start 288: plm-reg-itk-rigid-a-check-2 -444/571 Test #270: plm-maximum-a-check ................... Passed 0.13 sec +443/571 Test #265: plm-gamma-c-check ..................... Passed 0.18 sec Start 291: plm-reg-itk-similarity-check-1 -445/571 Test #273: plm-multiply-a-check .................. Passed 0.12 sec +444/571 Test #196: plm-convert-dicom-e ................... Passed 0.78 sec Start 293: plm-reg-itk-similarity-check-2 -446/571 Test #276: plm-multiply-vf-a-check ............... Passed 0.14 sec +445/571 Test #267: plm-gamma-d-check ..................... Passed 0.18 sec Start 296: plm-reg-itk-bspline-check-1 -447/571 Test #280: plm-reg-align-center-check ............ Passed 0.11 sec +446/571 Test #270: plm-maximum-a-check ................... Passed 0.17 sec Start 298: plm-reg-itk-demons-check-1 -448/571 Test #197: plm-convert-dicom-f ................... Passed 0.76 sec +447/571 Test #273: plm-multiply-a-check .................. Passed 0.16 sec Start 300: plm-reg-itk-demons-check-2 -449/571 Test #283: plm-reg-itk-translation-check ......... Passed 0.14 sec +448/571 Test #276: plm-multiply-vf-a-check ............... Passed 0.16 sec Start 302: plm-reg-itk-demons-diff-check-1 -450/571 Test #286: plm-reg-itk-rigid-a-check-1 ........... Passed 0.13 sec +449/571 Test #280: plm-reg-align-center-check ............ Passed 0.15 sec Start 304: plm-reg-itk-demons-logd-check-1 -451/571 Test #291: plm-reg-itk-similarity-check-1 ........ Passed 0.12 sec +450/571 Test #283: plm-reg-itk-translation-check ......... Passed 0.14 sec Start 306: plm-reg-itk-demons-sym-logd-check-1 -452/571 Test #288: plm-reg-itk-rigid-a-check-2 ........... Passed 0.16 sec +451/571 Test #286: plm-reg-itk-rigid-a-check-1 ........... Passed 0.13 sec Start 309: plm-bsp-mse-c-check -453/571 Test #196: plm-convert-dicom-e ................... Passed 0.87 sec +452/571 Test #288: plm-reg-itk-rigid-a-check-2 ........... Passed 0.14 sec Start 312: plm-bsp-mse-g-check -454/571 Test #296: plm-reg-itk-bspline-check-1 ........... Passed 0.13 sec +453/571 Test #293: plm-reg-itk-similarity-check-2 ........ Passed 0.12 sec Start 315: plm-bsp-mse-h-check -455/571 Test #293: plm-reg-itk-similarity-check-2 ........ Passed 0.18 sec +454/571 Test #291: plm-reg-itk-similarity-check-1 ........ Passed 0.17 sec Start 318: plm-bsp-mse-i-check -456/571 Test #298: plm-reg-itk-demons-check-1 ............ Passed 0.16 sec +455/571 Test #296: plm-reg-itk-bspline-check-1 ........... Passed 0.17 sec Start 321: plm-bsp-mse-k-check -457/571 Test #300: plm-reg-itk-demons-check-2 ............ Passed 0.16 sec +456/571 Test #298: plm-reg-itk-demons-check-1 ............ Passed 0.17 sec Start 324: plm-bsp-mse-l-check -458/571 Test #302: plm-reg-itk-demons-diff-check-1 ....... Passed 0.14 sec +457/571 Test #300: plm-reg-itk-demons-check-2 ............ Passed 0.17 sec Start 326: plm-bsp-mse-o-stats -459/571 Test #304: plm-reg-itk-demons-logd-check-1 ....... Passed 0.14 sec +458/571 Test #302: plm-reg-itk-demons-diff-check-1 ....... Passed 0.17 sec Start 328: plm-bsp-mse-p-stats -460/571 Test #306: plm-reg-itk-demons-sym-logd-check-1 ... Passed 0.14 sec +459/571 Test #304: plm-reg-itk-demons-logd-check-1 ....... Passed 0.18 sec Start 330: plm-bsp-mse-q-stats -461/571 Test #309: plm-bsp-mse-c-check ................... Passed 0.14 sec +460/571 Test #306: plm-reg-itk-demons-sym-logd-check-1 ... Passed 0.18 sec Start 332: plm-bsp-mse-r-stats -462/571 Test #312: plm-bsp-mse-g-check ................... Passed 0.14 sec +461/571 Test #309: plm-bsp-mse-c-check ................... Passed 0.18 sec Start 335: plm-bsp-mi-c-check -463/571 Test #315: plm-bsp-mse-h-check ................... Passed 0.15 sec +462/571 Test #243: plm-dmap-a ............................ Passed 0.64 sec Start 338: plm-bsp-mi-c-2-check -464/571 Test #318: plm-bsp-mse-i-check ................... Passed 0.16 sec +463/571 Test #312: plm-bsp-mse-g-check ................... Passed 0.19 sec Start 341: plm-bsp-mi-k-check -465/571 Test #321: plm-bsp-mse-k-check ................... Passed 0.16 sec +464/571 Test #315: plm-bsp-mse-h-check ................... Passed 0.18 sec Start 344: plm-bsp-gm-k-check -466/571 Test #324: plm-bsp-mse-l-check ................... Passed 0.17 sec +465/571 Test #318: plm-bsp-mse-i-check ................... Passed 0.18 sec Start 346: plm-bsp-sm-multi-a-stats -467/571 Test #335: plm-bsp-mi-c-check .................... Passed 0.11 sec +466/571 Test #321: plm-bsp-mse-k-check ................... Passed 0.17 sec Start 349: plm-bsp-openmp-check -468/571 Test #341: plm-bsp-mi-k-check .................... Passed 0.08 sec +467/571 Test #324: plm-bsp-mse-l-check ................... Passed 0.19 sec Start 351: plm-bsp-resume-stats -469/571 Test #338: plm-bsp-mi-c-2-check .................. Passed 0.13 sec +468/571 Test #245: plm-dmap-c ............................ Passed 0.74 sec Start 353: plm-bsp-logfile-check -470/571 Test #344: plm-bsp-gm-k-check .................... Passed 0.10 sec +469/571 Test #335: plm-bsp-mi-c-check .................... Passed 0.15 sec Start 356: plm-bsp-ushort-check -471/571 Test #349: plm-bsp-openmp-check .................. Passed 0.07 sec +470/571 Test #338: plm-bsp-mi-c-2-check .................. Passed 0.16 sec Start 359: plm-bsp-double-check -472/571 Test #243: plm-dmap-a ............................ Passed 0.81 sec +471/571 Test #341: plm-bsp-mi-k-check .................... Passed 0.16 sec Start 360: plm-bsp-itk-output -473/571 Test #353: plm-bsp-logfile-check ................. Passed 0.08 sec +472/571 Test #344: plm-bsp-gm-k-check .................... Passed 0.16 sec Start 363: plm-bsp-char-output-check -474/571 Test #356: plm-bsp-ushort-check .................. Passed 0.08 sec +473/571 Test #349: plm-bsp-openmp-check .................. Passed 0.14 sec Start 367: plm-bsp-regularize-none-check -475/571 Test #277: plm-usage ............................. Passed 0.65 sec +474/571 Test #353: plm-bsp-logfile-check ................. Passed 0.11 sec Start 370: plm-bsp-regularize-analytic-check -476/571 Test #359: plm-bsp-double-check .................. Passed 0.11 sec +475/571 Test #356: plm-bsp-ushort-check .................. Passed 0.11 sec Start 373: plm-bsp-regularize-numeric-check -477/571 Test #245: plm-dmap-c ............................ Passed 0.90 sec +476/571 Test #359: plm-bsp-double-check .................. Passed 0.10 sec Start 374: plm-bsp-landmark-a -478/571 Test #363: plm-bsp-char-output-check ............. Passed 0.09 sec +477/571 Test #277: plm-usage ............................. Passed 0.64 sec Start 377: plm-bsp-landmark-b-check -479/571 Test #367: plm-bsp-regularize-none-check ......... Passed 0.09 sec +478/571 Test #363: plm-bsp-char-output-check ............. Passed 0.10 sec Start 380: plm-bsp-landmark-c-check -480/571 Test #370: plm-bsp-regularize-analytic-check ..... Passed 0.08 sec +479/571 Test #367: plm-bsp-regularize-none-check ......... Passed 0.09 sec Start 383: plm-bsp-landmark-d-check -481/571 Test #373: plm-bsp-regularize-numeric-check ...... Passed 0.08 sec +480/571 Test #370: plm-bsp-regularize-analytic-check ..... Passed 0.10 sec Start 386: plm-bsp-landmark-e-check -482/571 Test #377: plm-bsp-landmark-b-check .............. Passed 0.07 sec +481/571 Test #373: plm-bsp-regularize-numeric-check ...... Passed 0.10 sec Start 389: plm-bsp-dcos-a-check -483/571 Test #380: plm-bsp-landmark-c-check .............. Passed 0.08 sec +482/571 Test #377: plm-bsp-landmark-b-check .............. Passed 0.08 sec Start 392: plm-bsp-dcos-b-check -484/571 Test #383: plm-bsp-landmark-d-check .............. Passed 0.08 sec +483/571 Test #380: plm-bsp-landmark-c-check .............. Passed 0.08 sec Start 395: plm-bsp-dcos-c-check -485/571 Test #386: plm-bsp-landmark-e-check .............. Passed 0.09 sec +484/571 Test #386: plm-bsp-landmark-e-check .............. Passed 0.07 sec Start 398: plm-bsp-dcos-d-check -486/571 Test #389: plm-bsp-dcos-a-check .................. Passed 0.09 sec +485/571 Test #383: plm-bsp-landmark-d-check .............. Passed 0.11 sec Start 401: plm-bsp-dcos-e-check -487/571 Test #392: plm-bsp-dcos-b-check .................. Passed 0.07 sec +486/571 Test #389: plm-bsp-dcos-a-check .................. Passed 0.09 sec Start 404: plm-bsp-dcos-f-check -488/571 Test #395: plm-bsp-dcos-c-check .................. Passed 0.09 sec +487/571 Test #392: plm-bsp-dcos-b-check .................. Passed 0.09 sec Start 407: plm-reg-multi-a-check -489/571 Test #398: plm-bsp-dcos-d-check .................. Passed 0.08 sec +488/571 Test #398: plm-bsp-dcos-d-check .................. Passed 0.06 sec Start 410: plm-reg-multi-b-check -490/571 Test #401: plm-bsp-dcos-e-check .................. Passed 0.08 sec +489/571 Test #395: plm-bsp-dcos-c-check .................. Passed 0.10 sec Start 413: plm-reg-dv-itk-translation-check -491/571 Test #404: plm-bsp-dcos-f-check .................. Passed 0.09 sec +490/571 Test #346: plm-bsp-sm-multi-a-stats .............. Passed 0.43 sec Start 414: plm-reg-roi-a -492/571 Test #407: plm-reg-multi-a-check ................. Passed 0.08 sec +491/571 Test #407: plm-reg-multi-a-check ................. Passed 0.06 sec Start 415: plm-reg-roi-b -493/571 Test #410: plm-reg-multi-b-check ................. Passed 0.08 sec +492/571 Test #328: plm-bsp-mse-p-stats ................... Passed 0.58 sec Start 416: plm-reg-roi-c -494/571 Test #332: plm-bsp-mse-r-stats ................... Passed 0.66 sec +493/571 Test #401: plm-bsp-dcos-e-check .................. Passed 0.13 sec Start 417: plm-reg-roi-d -495/571 Test #413: plm-reg-dv-itk-translation-check ...... Passed 0.11 sec +494/571 Test #404: plm-bsp-dcos-f-check .................. Passed 0.13 sec Start 418: plm-reg-roi-e -496/571 Test #328: plm-bsp-mse-p-stats ................... Passed 0.74 sec +495/571 Test #410: plm-reg-multi-b-check ................. Passed 0.12 sec Start 419: plm-reg-stiffness-a -497/571 Test #346: plm-bsp-sm-multi-a-stats .............. Passed 0.66 sec +496/571 Test #413: plm-reg-dv-itk-translation-check ...... Passed 0.14 sec Start 422: plm-reg-process-a-check -498/571 Test #326: plm-bsp-mse-o-stats ................... Passed 0.84 sec +497/571 Test #330: plm-bsp-mse-q-stats ................... Passed 0.65 sec Start 425: plm-reg-trans-a-check -499/571 Test #351: plm-bsp-resume-stats .................. Passed 0.66 sec +498/571 Test #332: plm-bsp-mse-r-stats ................... Passed 0.66 sec Start 428: plm-reg-trans-b-check -500/571 Test #422: plm-reg-process-a-check ............... Passed 0.06 sec +499/571 Test #351: plm-bsp-resume-stats .................. Passed 0.55 sec Start 431: plm-reg-trans-mi-a-check -501/571 Test #330: plm-bsp-mse-q-stats ................... Passed 0.86 sec +500/571 Test #326: plm-bsp-mse-o-stats ................... Passed 0.74 sec Start 434: plm-reg-autores-a-check -502/571 Test #428: plm-reg-trans-b-check ................. Passed 0.06 sec +501/571 Test #422: plm-reg-process-a-check ............... Passed 0.11 sec Start 437: plm-reg-autores-b-check -503/571 Test #425: plm-reg-trans-a-check ................. Passed 0.09 sec +502/571 Test #428: plm-reg-trans-b-check ................. Passed 0.10 sec Start 438: plm-reg-point-dmap-a -504/571 Test #431: plm-reg-trans-mi-a-check .............. Passed 0.07 sec +503/571 Test #431: plm-reg-trans-mi-a-check .............. Passed 0.11 sec Start 441: plm-compose-a-warp -505/571 Test #434: plm-reg-autores-a-check ............... Passed 0.07 sec +504/571 Test #425: plm-reg-trans-a-check ................. Passed 0.17 sec Start 443: plm-compose-a-check -506/571 Test #437: plm-reg-autores-b-check ............... Passed 0.07 sec +505/571 Test #434: plm-reg-autores-a-check ............... Passed 0.14 sec Start 445: plm-compose-b-warp -507/571 Test #443: plm-compose-a-check ................... Passed 0.06 sec +506/571 Test #437: plm-reg-autores-b-check ............... Passed 0.10 sec Start 447: plm-compose-b-check -508/571 Test #447: plm-compose-b-check ................... Passed 0.07 sec +507/571 Test #443: plm-compose-a-check ................... Passed 0.06 sec Start 449: plm-compose-c-warp -509/571 Test #374: plm-bsp-landmark-a .................... Passed 0.83 sec +508/571 Test #447: plm-compose-b-check ................... Passed 0.06 sec Start 451: plm-compose-c-check -510/571 Test #451: plm-compose-c-check ................... Passed 0.08 sec +509/571 Test #451: plm-compose-c-check ................... Passed 0.08 sec Start 454: plm-resample-a-check -511/571 Test #360: plm-bsp-itk-output .................... Passed 1.09 sec +510/571 Test #454: plm-resample-a-check .................. Passed 0.08 sec Start 457: plm-resample-b-check -512/571 Test #454: plm-resample-a-check .................. Passed 0.09 sec +511/571 Test #457: plm-resample-b-check .................. Passed 0.13 sec Start 460: plm-resample-c-check -513/571 Test #457: plm-resample-b-check .................. Passed 0.06 sec +512/571 Test #204: plm-convert-dicom-donut-c ............. Passed 2.20 sec Start 463: plm-scale-a-check -514/571 Test #204: plm-convert-dicom-donut-c ............. Passed 2.32 sec +513/571 Test #460: plm-resample-c-check .................. Passed 0.11 sec Start 466: plm-scale-vf-a-check -515/571 Test #460: plm-resample-c-check .................. Passed 0.08 sec +514/571 Test #374: plm-bsp-landmark-a .................... Passed 1.05 sec Start 472: plm-thumbnail-a-check -516/571 Test #463: plm-scale-a-check ..................... Passed 0.06 sec +515/571 Test #360: plm-bsp-itk-output .................... Passed 1.16 sec Start 475: plm-thumbnail-b-check -517/571 Test #466: plm-scale-vf-a-check .................. Passed 0.10 sec +516/571 Test #463: plm-scale-a-check ..................... Passed 0.16 sec Start 478: plm-thumbnail-c-check -518/571 Test #472: plm-thumbnail-a-check ................. Passed 0.09 sec +517/571 Test #472: plm-thumbnail-a-check ................. Passed 0.09 sec Start 481: plm-intersect-check -519/571 Test #475: plm-thumbnail-b-check ................. Passed 0.07 sec +518/571 Test #466: plm-scale-vf-a-check .................. Passed 0.16 sec Start 484: plm-union-check -520/571 Test #481: plm-intersect-check ................... Passed 0.14 sec +519/571 Test #475: plm-thumbnail-b-check ................. Passed 0.14 sec Start 487: plm-threshold-a-check -521/571 Test #478: plm-thumbnail-c-check ................. Passed 0.18 sec +520/571 Test #478: plm-thumbnail-c-check ................. Passed 0.14 sec Start 490: plm-threshold-b-check -522/571 Test #484: plm-union-check ....................... Passed 0.17 sec +521/571 Test #481: plm-intersect-check ................... Passed 0.14 sec Start 493: plm-threshold-c-check -523/571 Test #487: plm-threshold-a-check ................. Passed 0.14 sec +522/571 Test #484: plm-union-check ....................... Passed 0.14 sec Start 494: plm-warp-pointset-a -524/571 Test #493: plm-threshold-c-check ................. Passed 0.12 sec +523/571 Test #445: plm-compose-b-warp .................... Passed 0.80 sec Start 495: plm-warp-pointset-b -525/571 Test #490: plm-threshold-b-check ................. Passed 0.18 sec +524/571 Test #487: plm-threshold-a-check ................. Passed 0.13 sec Start 496: plm-warp-pointset-c -526/571 Test #445: plm-compose-b-warp .................... Passed 0.93 sec +525/571 Test #416: plm-reg-roi-c ......................... Passed 1.11 sec Start 499: plm-warp-a-check -527/571 Test #441: plm-compose-a-warp .................... Passed 1.00 sec +526/571 Test #490: plm-threshold-b-check ................. Passed 0.15 sec Start 502: plm-warp-b-check-1 -528/571 Test #416: plm-reg-roi-c ......................... Passed 1.30 sec +527/571 Test #493: plm-threshold-c-check ................. Passed 0.14 sec Start 504: plm-warp-b-check-2 -529/571 Test #502: plm-warp-b-check-1 .................... Passed 0.10 sec +528/571 Test #499: plm-warp-a-check ...................... Passed 0.13 sec Start 507: plm-warp-c-check -530/571 Test #499: plm-warp-a-check ...................... Passed 0.16 sec +529/571 Test #502: plm-warp-b-check-1 .................... Passed 0.14 sec Start 510: plm-warp-d-check -531/571 Test #504: plm-warp-b-check-2 .................... Passed 0.13 sec +530/571 Test #441: plm-compose-a-warp .................... Passed 1.07 sec Start 513: plm-warp-f-check-1 -532/571 Test #449: plm-compose-c-warp .................... Passed 1.04 sec +531/571 Test #504: plm-warp-b-check-2 .................... Passed 0.18 sec Start 516: plm-warp-g-check-1 -533/571 Test #507: plm-warp-c-check ...................... Passed 0.16 sec +532/571 Test #507: plm-warp-c-check ...................... Passed 0.10 sec Start 519: plm-warp-h-check-1 -534/571 Test #513: plm-warp-f-check-1 .................... Passed 0.12 sec +533/571 Test #510: plm-warp-d-check ...................... Passed 0.10 sec Start 522: plm-warp-i-check-1 -535/571 Test #510: plm-warp-d-check ...................... Passed 0.17 sec +534/571 Test #513: plm-warp-f-check-1 .................... Passed 0.16 sec Start 525: plm-xf-convert-c -536/571 Test #516: plm-warp-g-check-1 .................... Passed 0.13 sec +535/571 Test #415: plm-reg-roi-b ......................... Passed 1.52 sec Start 529: plm-xf-convert-d-warp-1-check -537/571 Test #519: plm-warp-h-check-1 .................... Passed 0.11 sec +536/571 Test #516: plm-warp-g-check-1 .................... Passed 0.19 sec Start 532: plm-xf-convert-d-warp-2-check -538/571 Test #522: plm-warp-i-check-1 .................... Passed 0.15 sec +537/571 Test #519: plm-warp-h-check-1 .................... Passed 0.19 sec Start 533: plm-xf-convert-e -539/571 Test #529: plm-xf-convert-d-warp-1-check ......... Passed 0.13 sec +538/571 Test #522: plm-warp-i-check-1 .................... Passed 0.19 sec Start 534: plm-xf-convert-f -540/571 Test #414: plm-reg-roi-a ......................... Passed 1.78 sec +539/571 Test #414: plm-reg-roi-a ......................... Passed 1.61 sec Start 535: plm-xf-convert-g -541/571 Test #532: plm-xf-convert-d-warp-2-check ......... Passed 0.14 sec +540/571 Test #449: plm-compose-c-warp .................... Passed 1.27 sec Start 538: plm-xf-convert-h-check -542/571 Test #415: plm-reg-roi-b ......................... Passed 1.83 sec +541/571 Test #532: plm-xf-convert-d-warp-2-check ......... Passed 0.10 sec Start 541: xf-invert-vf-zero-1-check -543/571 Test #438: plm-reg-point-dmap-a .................. Passed 1.58 sec +542/571 Test #529: plm-xf-convert-d-warp-1-check ......... Passed 0.14 sec Start 544: xf-invert-vf-trans-1-check -544/571 Test #538: plm-xf-convert-h-check ................ Passed 0.11 sec +543/571 Test #538: plm-xf-convert-h-check ................ Passed 0.15 sec Start 546: xf-invert-vrs-a-check -545/571 Test #541: xf-invert-vf-zero-1-check ............. Passed 0.10 sec +544/571 Test #541: xf-invert-vf-zero-1-check ............. Passed 0.15 sec Start 548: xf-invert-vrs-b-check -546/571 Test #544: xf-invert-vf-trans-1-check ............ Passed 0.15 sec +545/571 Test #544: xf-invert-vf-trans-1-check ............ Passed 0.15 sec Start 551: proton-dose-1-check -547/571 Test #546: xf-invert-vrs-a-check ................. Passed 0.12 sec +546/571 Test #417: plm-reg-roi-d ......................... Passed 1.79 sec Start 554: proton-dose-4a-check -548/571 Test #548: xf-invert-vrs-b-check ................. Passed 0.11 sec +547/571 Test #546: xf-invert-vrs-a-check ................. Passed 0.12 sec Start 557: proton-dose-4d-check -549/571 Test #551: proton-dose-1-check ................... Passed 0.09 sec +548/571 Test #551: proton-dose-1-check ................... Passed 0.09 sec Start 560: proton-dose-5a-check -550/571 Test #554: proton-dose-4a-check .................. Passed 0.07 sec +549/571 Test #548: xf-invert-vrs-b-check ................. Passed 0.13 sec Start 563: proton-dose-5d-check -551/571 Test #496: plm-warp-pointset-c ................... Passed 0.92 sec +550/571 Test #554: proton-dose-4a-check .................. Passed 0.12 sec Start 566: proton-dose-6a-check -552/571 Test #557: proton-dose-4d-check .................. Passed 0.12 sec +551/571 Test #495: plm-warp-pointset-b ................... Passed 0.89 sec Start 568: proton-dose-8d-stats +552/571 Test #557: proton-dose-4d-check .................. Passed 0.14 sec 553/571 Test #560: proton-dose-5a-check .................. Passed 0.11 sec -554/571 Test #494: plm-warp-pointset-a ................... Passed 1.05 sec -555/571 Test #563: proton-dose-5d-check .................. Passed 0.13 sec -556/571 Test #566: proton-dose-6a-check .................. Passed 0.10 sec -557/571 Test #417: plm-reg-roi-d ......................... Passed 2.21 sec -558/571 Test #495: plm-warp-pointset-b ................... Passed 1.08 sec -559/571 Test #525: plm-xf-convert-c ...................... Passed 0.86 sec -560/571 Test #419: plm-reg-stiffness-a ................... Passed 2.48 sec -561/571 Test #534: plm-xf-convert-f ...................... Passed 0.96 sec -562/571 Test #533: plm-xf-convert-e ...................... Passed 1.12 sec -563/571 Test #568: proton-dose-8d-stats .................. Passed 0.72 sec -564/571 Test #535: plm-xf-convert-g ...................... Passed 1.23 sec -565/571 Test #418: plm-reg-roi-e ......................... Passed 3.07 sec -566/571 Test #569: wed-a ................................. Passed 10.08 sec +554/571 Test #563: proton-dose-5d-check .................. Passed 0.10 sec +555/571 Test #566: proton-dose-6a-check .................. Passed 0.14 sec +556/571 Test #494: plm-warp-pointset-a ................... Passed 1.13 sec +557/571 Test #496: plm-warp-pointset-c ................... Passed 1.09 sec +558/571 Test #438: plm-reg-point-dmap-a .................. Passed 1.97 sec +559/571 Test #419: plm-reg-stiffness-a ................... Passed 2.32 sec +560/571 Test #525: plm-xf-convert-c ...................... Passed 0.92 sec +561/571 Test #535: plm-xf-convert-g ...................... Passed 0.83 sec +562/571 Test #533: plm-xf-convert-e ...................... Passed 0.94 sec +563/571 Test #534: plm-xf-convert-f ...................... Passed 0.92 sec +564/571 Test #568: proton-dose-8d-stats .................. Passed 0.71 sec +565/571 Test #418: plm-reg-roi-e ......................... Passed 2.69 sec +566/571 Test #569: wed-a ................................. Passed 7.92 sec Start 570: wed-b Start 571: wed-c -567/571 Test #571: wed-c ................................. Passed 2.05 sec -568/571 Test #570: wed-b ................................. Passed 6.52 sec -569/571 Test #467: plm-sift-a ............................ Passed 42.59 sec +567/571 Test #571: wed-c ................................. Passed 1.38 sec +568/571 Test #570: wed-b ................................. Passed 3.94 sec +569/571 Test #467: plm-sift-a ............................ Passed 25.40 sec Start 468: plm-sift-a-check-1 Start 469: plm-sift-a-check-2 -570/571 Test #469: plm-sift-a-check-2 .................... Passed 0.06 sec -571/571 Test #468: plm-sift-a-check-1 .................... Passed 0.08 sec +570/571 Test #468: plm-sift-a-check-1 .................... Passed 0.02 sec +571/571 Test #469: plm-sift-a-check-2 .................... Passed 0.02 sec 100% tests passed, 0 tests failed out of 571 -Total Test time (real) = 69.80 sec +Total Test time (real) = 48.12 sec make[2]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' make[1]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1' create-stamp debian/debhelper-build-stamp @@ -3781,16 +3816,16 @@ debian/rules override_dh_auto_install make[1]: Entering directory '/build/plastimatch-1.9.3+dfsg.1' dh_auto_install - cd obj-x86_64-linux-gnu && make -j15 install DESTDIR=/build/plastimatch-1.9.3\+dfsg.1/debian/plastimatch AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-x86_64-linux-gnu && make -j16 install DESTDIR=/build/plastimatch-1.9.3\+dfsg.1/debian/plastimatch AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/plastimatch-1.9.3+dfsg.1 -B/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/CMakeFiles /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' make -f libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/build.make libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/depend +make -f libs/devillard/CMakeFiles/devillard.dir/build.make libs/devillard/CMakeFiles/devillard.dir/depend make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9 /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/DependInfo.cmake --color= -make -f libs/devillard/CMakeFiles/devillard.dir/build.make libs/devillard/CMakeFiles/devillard.dir/depend make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/libs/devillard /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/devillard /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/devillard/CMakeFiles/devillard.dir/DependInfo.cmake --color= make -f libs/inih-r29/CMakeFiles/inih.dir/build.make libs/inih-r29/CMakeFiles/inih.dir/depend @@ -3800,19 +3835,19 @@ make -f libs/nkidecompress/CMakeFiles/nkidecompress.dir/build.make libs/nkidecompress/CMakeFiles/nkidecompress.dir/depend make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/libs/specfun /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/specfun /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/specfun/CMakeFiles/specfun.dir/DependInfo.cmake --color= +make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' +make -f libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/build.make libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/build make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/nkidecompress /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/nkidecompress/CMakeFiles/nkidecompress.dir/DependInfo.cmake --color= -make -f src/plastimatch/sys/CMakeFiles/plmsys.dir/build.make src/plastimatch/sys/CMakeFiles/plmsys.dir/depend make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys/CMakeFiles/plmsys.dir/DependInfo.cmake --color= +make[4]: Nothing to be done for 'libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/build'. make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' +make -f src/plastimatch/sys/CMakeFiles/plmsys.dir/build.make src/plastimatch/sys/CMakeFiles/plmsys.dir/depend +make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/clp/CMakeFiles/plmclp.dir/build.make src/plastimatch/clp/CMakeFiles/plmclp.dir/depend +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys/CMakeFiles/plmsys.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/clp /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/clp/CMakeFiles/plmclp.dir/DependInfo.cmake --color= -make -f libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/build.make libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/build -make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/build'. -make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' make -f libs/devillard/CMakeFiles/devillard.dir/build.make libs/devillard/CMakeFiles/devillard.dir/build make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' @@ -3820,37 +3855,37 @@ make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' +[ 0%] Built target lbfgs make -f libs/inih-r29/CMakeFiles/inih.dir/build.make libs/inih-r29/CMakeFiles/inih.dir/build make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'libs/inih-r29/CMakeFiles/inih.dir/build'. make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' make -f libs/specfun/CMakeFiles/specfun.dir/build.make libs/specfun/CMakeFiles/specfun.dir/build -make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'libs/specfun/CMakeFiles/specfun.dir/build'. make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -make -f src/plastimatch/clp/CMakeFiles/plmclp.dir/build.make src/plastimatch/clp/CMakeFiles/plmclp.dir/build +make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' +make[4]: Nothing to be done for 'libs/inih-r29/CMakeFiles/inih.dir/build'. make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'src/plastimatch/clp/CMakeFiles/plmclp.dir/build'. +make[4]: Nothing to be done for 'libs/specfun/CMakeFiles/specfun.dir/build'. make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' make -f libs/nkidecompress/CMakeFiles/nkidecompress.dir/build.make libs/nkidecompress/CMakeFiles/nkidecompress.dir/build -make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -[ 0%] Built target lbfgs +[ 0%] Built target devillard make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'libs/nkidecompress/CMakeFiles/nkidecompress.dir/build'. make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/sys/CMakeFiles/plmsys.dir/build.make src/plastimatch/sys/CMakeFiles/plmsys.dir/build +make -f src/plastimatch/clp/CMakeFiles/plmclp.dir/build.make src/plastimatch/clp/CMakeFiles/plmclp.dir/build make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/plastimatch/sys/CMakeFiles/plmsys.dir/build'. make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -[ 0%] Built target devillard -[ 0%] Built target specfun +make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' +make[4]: Nothing to be done for 'src/plastimatch/clp/CMakeFiles/plmclp.dir/build'. +make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' [ 1%] Built target inih -[ 1%] Built target plmclp -[ 1%] Built target nkidecompress +[ 1%] Built target specfun [ 4%] Built target plmsys +[ 4%] Built target nkidecompress make -f src/plastimatch/base/CMakeFiles/plmbase.dir/build.make src/plastimatch/base/CMakeFiles/plmbase.dir/depend +[ 4%] Built target plmclp make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base/CMakeFiles/plmbase.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' @@ -3875,22 +3910,22 @@ cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose/CMakeFiles/plmdose.dir/DependInfo.cmake --color= +make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register/CMakeFiles/plmregister.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/build.make src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/build +make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' +make -f src/plastimatch/dose/CMakeFiles/plmdose.dir/build.make src/plastimatch/dose/CMakeFiles/plmdose.dir/build make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/build'. make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -make -f src/plastimatch/dose/CMakeFiles/plmdose.dir/build.make src/plastimatch/dose/CMakeFiles/plmdose.dir/build +make -f src/plastimatch/register/CMakeFiles/plmregister.dir/build.make src/plastimatch/register/CMakeFiles/plmregister.dir/build make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/plastimatch/dose/CMakeFiles/plmdose.dir/build'. make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register/CMakeFiles/plmregister.dir/DependInfo.cmake --color= [ 53%] Built target plmreconstruct [ 58%] Built target plmdose -make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -make -f src/plastimatch/register/CMakeFiles/plmregister.dir/build.make src/plastimatch/register/CMakeFiles/plmregister.dir/build make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/plastimatch/register/CMakeFiles/plmregister.dir/build'. make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' @@ -3906,8 +3941,8 @@ [ 77%] Built target plmsegment make -f src/plastimatch/cli/CMakeFiles/plastimatch.dir/build.make src/plastimatch/cli/CMakeFiles/plastimatch.dir/depend make -f src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/build.make src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/depend -make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/compute_distance.dir/build.make src/plastimatch/standalone/CMakeFiles/compute_distance.dir/depend +make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/DependInfo.cmake --color= make -f src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/build.make src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/depend make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' @@ -3915,128 +3950,128 @@ make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/DependInfo.cmake --color= make -f src/plastimatch/standalone/CMakeFiles/wed.dir/build.make src/plastimatch/standalone/CMakeFiles/wed.dir/depend -make -f src/plastimatch/standalone/CMakeFiles/dlib_train.dir/build.make src/plastimatch/standalone/CMakeFiles/dlib_train.dir/depend make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' +make -f src/plastimatch/standalone/CMakeFiles/dlib_train.dir/build.make src/plastimatch/standalone/CMakeFiles/dlib_train.dir/depend cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/wed.dir/DependInfo.cmake --color= make -f src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/build.make src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/depend +make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/dlib_train.dir/DependInfo.cmake --color= -make -f src/plastimatch/standalone/CMakeFiles/sobp.dir/build.make src/plastimatch/standalone/CMakeFiles/sobp.dir/depend +make -f src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/build.make src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/build +make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/DependInfo.cmake --color= -make -f src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/build.make src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/depend make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' +make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/build'. make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/sobp.dir/DependInfo.cmake --color= -make -f src/plastimatch/standalone/CMakeFiles/compute_distance.dir/build.make src/plastimatch/standalone/CMakeFiles/compute_distance.dir/build make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' +make -f src/plastimatch/standalone/CMakeFiles/compute_distance.dir/build.make src/plastimatch/standalone/CMakeFiles/compute_distance.dir/build make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/DependInfo.cmake --color= +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli/CMakeFiles/plastimatch.dir/DependInfo.cmake --color= +make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/build.make src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/build -make -f src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/build.make src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/depend make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/compute_distance.dir/build'. make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/build'. -make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -make -f src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/build.make src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/build -make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/DependInfo.cmake --color= -make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -make -f src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/build.make src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/build -make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/build'. -make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/wed.dir/build.make src/plastimatch/standalone/CMakeFiles/wed.dir/build -make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli/CMakeFiles/plastimatch.dir/DependInfo.cmake --color= -make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/build'. make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/dlib_train.dir/build.make src/plastimatch/standalone/CMakeFiles/dlib_train.dir/build -make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/wed.dir/build'. make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' +make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/build'. +make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/build.make src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/build make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/dlib_train.dir/build'. make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -make -f src/plastimatch/standalone/CMakeFiles/sobp.dir/build.make src/plastimatch/standalone/CMakeFiles/sobp.dir/build make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/build'. make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/sobp.dir/build'. -make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -make -f src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/build.make src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/build make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/cli/CMakeFiles/plastimatch.dir/build.make src/plastimatch/cli/CMakeFiles/plastimatch.dir/build -make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/build'. -make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' [ 78%] Built target compute_distance -[ 78%] Built target dicom_uid [ 79%] Built target landmark_diff -[ 80%] Built target merge_vfs -[ 81%] Built target wed -make -f src/plastimatch/standalone/CMakeFiles/demons.dir/build.make src/plastimatch/standalone/CMakeFiles/demons.dir/depend +[ 79%] Built target dicom_uid +[ 80%] Built target wed +make -f src/plastimatch/standalone/CMakeFiles/sobp.dir/build.make src/plastimatch/standalone/CMakeFiles/sobp.dir/depend +[ 81%] Built target dlib_train +make -f src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/build.make src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/depend +make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/sobp.dir/DependInfo.cmake --color= +[ 81%] Built target shuffle_mha +make -f src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/build.make src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/depend make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/DependInfo.cmake --color= +make -f src/plastimatch/standalone/CMakeFiles/demons.dir/build.make src/plastimatch/standalone/CMakeFiles/demons.dir/depend make -f src/plastimatch/standalone/CMakeFiles/check_grad.dir/build.make src/plastimatch/standalone/CMakeFiles/check_grad.dir/depend +make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/demons.dir/DependInfo.cmake --color= -make -f src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/build.make src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/depend make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/check_grad.dir/DependInfo.cmake --color= -make -f src/plastimatch/standalone/CMakeFiles/dicom_info.dir/build.make src/plastimatch/standalone/CMakeFiles/dicom_info.dir/depend +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/DependInfo.cmake --color= +make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' +make -f src/plastimatch/standalone/CMakeFiles/sobp.dir/build.make src/plastimatch/standalone/CMakeFiles/sobp.dir/build make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -[ 82%] Built target dlib_train +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/check_grad.dir/DependInfo.cmake --color= +make -f src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/build.make src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/depend make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'src/plastimatch/cli/CMakeFiles/plastimatch.dir/build'. +make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/sobp.dir/build'. make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' +make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/DependInfo.cmake --color= -[ 83%] Built target sobp +make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' +make -f src/plastimatch/standalone/CMakeFiles/demons.dir/build.make src/plastimatch/standalone/CMakeFiles/demons.dir/build make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/dicom_info.dir/DependInfo.cmake --color= -[ 82%] Built target shuffle_mha -[ 84%] Built target xvi_archive -make -f src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/build.make src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/depend +make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/demons.dir/build'. make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/DependInfo.cmake --color= -make -f src/plastimatch/standalone/CMakeFiles/check_grad.dir/build.make src/plastimatch/standalone/CMakeFiles/check_grad.dir/build +make[4]: Nothing to be done for 'src/plastimatch/cli/CMakeFiles/plastimatch.dir/build'. +make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' +make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' +[ 82%] Built target sobp +make -f src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/build.make src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/build +make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/check_grad.dir/build'. +make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/build'. make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' +make -f src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/build.make src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/build make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' +make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' +make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/build'. make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' +[ 95%] Built target plastimatch +make -f src/plastimatch/standalone/CMakeFiles/check_grad.dir/build.make src/plastimatch/standalone/CMakeFiles/check_grad.dir/build make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -make -f src/plastimatch/standalone/CMakeFiles/demons.dir/build.make src/plastimatch/standalone/CMakeFiles/demons.dir/build make -f src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/build.make src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/build make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/demons.dir/build'. +make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/build'. make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -make -f src/plastimatch/standalone/CMakeFiles/dicom_info.dir/build.make src/plastimatch/standalone/CMakeFiles/dicom_info.dir/build make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/build'. +make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/check_grad.dir/build'. make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' +make -f src/plastimatch/standalone/CMakeFiles/dicom_info.dir/build.make src/plastimatch/standalone/CMakeFiles/dicom_info.dir/depend +make -f src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/build.make src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/depend +[ 96%] Built target xvi_archive +[ 97%] Built target merge_vfs +[ 98%] Built target demons make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/dicom_info.dir/build'. +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/dicom_info.dir/DependInfo.cmake --color= +make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' +cd /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/DependInfo.cmake --color= +[ 98%] Built target hnd_to_pfm +[ 99%] Built target check_grad make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -[ 97%] Built target plastimatch -[ 98%] Built target check_grad +make -f src/plastimatch/standalone/CMakeFiles/dicom_info.dir/build.make src/plastimatch/standalone/CMakeFiles/dicom_info.dir/build make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/build.make src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/build -[ 99%] Built target demons +make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' +make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/dicom_info.dir/build'. +make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/build'. make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' -[ 99%] Built target hnd_to_pfm [100%] Built target dicom_info [100%] Built target bragg_curve make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu' @@ -4490,12 +4525,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1980787/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1980787/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/111235 and its subdirectories -I: Current time: Thu Dec 30 13:42:22 -12 2021 -I: pbuilder-time-stamp: 1640914942 +I: removing directory /srv/workspace/pbuilder/1980787 and its subdirectories +I: Current time: Thu Feb 2 22:16:20 +14 2023 +I: pbuilder-time-stamp: 1675325780