Diff of the two buildlogs: -- --- b1/build.log 2022-01-23 14:56:15.449459454 +0000 +++ b2/build.log 2022-01-23 14:57:52.250454220 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sat Feb 25 09:17:52 -12 2023 -I: pbuilder-time-stamp: 1677359872 +I: Current time: Mon Jan 24 04:56:16 +14 2022 +I: pbuilder-time-stamp: 1642949776 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -16,8 +16,8 @@ I: copying [./ngs-sdk_2.10.9-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.7F_YznvM/trustedkeys.kbx': General error -gpgv: Signature made Sun Jan 17 06:13:46 2021 -12 +gpgv: keyblock resource '/tmp/dpkg-verify-sig.hPB7OL4h/trustedkeys.kbx': General error +gpgv: Signature made Mon Jan 18 08:13:46 2021 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -33,135 +33,169 @@ dpkg-source: info: applying more_archs I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3023752/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/930990/tmp/hooks/D01_modify_environment starting +debug: Running on ionos11-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/930990/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/930990/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=16' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=15' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='0c93fabae96b42f29853a9204f2a07f6' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3023752' - PS1='# ' - PS2='> ' + INVOCATION_ID=2c9055523a7946a6b8ae00d70337a4a0 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=930990 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.qq4H7E3Ji8/pbuilderrc_V3DI --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.qq4H7E3Ji8/b1 --logfile b1/build.log ngs-sdk_2.10.9-1.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://85.184.249.68:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.qq4H7E3Ji8/pbuilderrc_M9U4 --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.qq4H7E3Ji8/b2 --logfile b2/build.log ngs-sdk_2.10.9-1.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://78.137.99.97:3128 I: uname -a - Linux ionos15-amd64 5.15.0-0.bpo.2-amd64 #1 SMP Debian 5.15.5-2~bpo11+1 (2022-01-02) x86_64 GNU/Linux + Linux i-capture-the-hostname 5.10.0-11-amd64 #1 SMP Debian 5.10.92-1 (2022-01-18) x86_64 GNU/Linux I: ls -l /bin total 5476 - -rwxr-xr-x 1 root root 1234376 Aug 4 2021 bash - -rwxr-xr-x 3 root root 38984 Jul 20 2020 bunzip2 - -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzcat - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep - -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzip2 - -rwxr-xr-x 1 root root 18424 Jul 20 2020 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore - -rwxr-xr-x 1 root root 43936 Sep 23 2020 cat - -rwxr-xr-x 1 root root 72672 Sep 23 2020 chgrp - -rwxr-xr-x 1 root root 64448 Sep 23 2020 chmod - -rwxr-xr-x 1 root root 72672 Sep 23 2020 chown - -rwxr-xr-x 1 root root 151168 Sep 23 2020 cp - -rwxr-xr-x 1 root root 125560 Dec 10 2020 dash - -rwxr-xr-x 1 root root 113664 Sep 23 2020 date - -rwxr-xr-x 1 root root 80968 Sep 23 2020 dd - -rwxr-xr-x 1 root root 93936 Sep 23 2020 df - -rwxr-xr-x 1 root root 147176 Sep 23 2020 dir - -rwxr-xr-x 1 root root 84440 Jul 28 2021 dmesg - lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname - -rwxr-xr-x 1 root root 39712 Sep 23 2020 echo - -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep - -rwxr-xr-x 1 root root 39680 Sep 23 2020 false - -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep - -rwxr-xr-x 1 root root 69032 Jul 28 2021 findmnt - -rwsr-xr-x 1 root root 34896 Feb 26 2021 fusermount - -rwxr-xr-x 1 root root 203072 Nov 9 2020 grep - -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip - -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe - -rwxr-xr-x 1 root root 98048 Mar 2 2021 gzip - -rwxr-xr-x 1 root root 22600 Nov 6 2019 hostname - -rwxr-xr-x 1 root root 72840 Sep 23 2020 ln - -rwxr-xr-x 1 root root 56952 Feb 7 2020 login - -rwxr-xr-x 1 root root 147176 Sep 23 2020 ls - -rwxr-xr-x 1 root root 149736 Jul 28 2021 lsblk - -rwxr-xr-x 1 root root 85184 Sep 23 2020 mkdir - -rwxr-xr-x 1 root root 76896 Sep 23 2020 mknod - -rwxr-xr-x 1 root root 48064 Sep 23 2020 mktemp - -rwxr-xr-x 1 root root 59632 Jul 28 2021 more - -rwsr-xr-x 1 root root 55528 Jul 28 2021 mount - -rwxr-xr-x 1 root root 18664 Jul 28 2021 mountpoint - -rwxr-xr-x 1 root root 147080 Sep 23 2020 mv - lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 43872 Sep 23 2020 pwd - lrwxrwxrwx 1 root root 4 Aug 4 2021 rbash -> bash - -rwxr-xr-x 1 root root 52032 Sep 23 2020 readlink - -rwxr-xr-x 1 root root 72704 Sep 23 2020 rm - -rwxr-xr-x 1 root root 52032 Sep 23 2020 rmdir - -rwxr-xr-x 1 root root 27472 Sep 27 2020 run-parts - -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Feb 23 03:48 sh -> dash - -rwxr-xr-x 1 root root 43808 Sep 23 2020 sleep - -rwxr-xr-x 1 root root 84928 Sep 23 2020 stty - -rwsr-xr-x 1 root root 71912 Jul 28 2021 su - -rwxr-xr-x 1 root root 39744 Sep 23 2020 sync - -rwxr-xr-x 1 root root 531928 Feb 16 2021 tar - -rwxr-xr-x 1 root root 14456 Sep 27 2020 tempfile - -rwxr-xr-x 1 root root 101408 Sep 23 2020 touch - -rwxr-xr-x 1 root root 39680 Sep 23 2020 true - -rwxr-xr-x 1 root root 14328 Feb 26 2021 ulockmgr_server - -rwsr-xr-x 1 root root 35040 Jul 28 2021 umount - -rwxr-xr-x 1 root root 39744 Sep 23 2020 uname - -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress - -rwxr-xr-x 1 root root 147176 Sep 23 2020 vdir - -rwxr-xr-x 1 root root 63744 Jul 28 2021 wdctl - lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat - -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp - -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff - -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep - -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep - -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce - -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep - -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless - -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore - -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew -I: user script /srv/workspace/pbuilder/3023752/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1234376 Aug 5 10:25 bash + -rwxr-xr-x 3 root root 38984 Jul 21 2020 bunzip2 + -rwxr-xr-x 3 root root 38984 Jul 21 2020 bzcat + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep + -rwxr-xr-x 3 root root 38984 Jul 21 2020 bzip2 + -rwxr-xr-x 1 root root 18424 Jul 21 2020 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore + -rwxr-xr-x 1 root root 43936 Sep 24 2020 cat + -rwxr-xr-x 1 root root 72672 Sep 24 2020 chgrp + -rwxr-xr-x 1 root root 64448 Sep 24 2020 chmod + -rwxr-xr-x 1 root root 72672 Sep 24 2020 chown + -rwxr-xr-x 1 root root 151168 Sep 24 2020 cp + -rwxr-xr-x 1 root root 125560 Dec 11 2020 dash + -rwxr-xr-x 1 root root 113664 Sep 24 2020 date + -rwxr-xr-x 1 root root 80968 Sep 24 2020 dd + -rwxr-xr-x 1 root root 93936 Sep 24 2020 df + -rwxr-xr-x 1 root root 147176 Sep 24 2020 dir + -rwxr-xr-x 1 root root 84440 Jul 29 09:09 dmesg + lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname + -rwxr-xr-x 1 root root 39712 Sep 24 2020 echo + -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep + -rwxr-xr-x 1 root root 39680 Sep 24 2020 false + -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep + -rwxr-xr-x 1 root root 69032 Jul 29 09:09 findmnt + -rwsr-xr-x 1 root root 34896 Feb 27 2021 fusermount + -rwxr-xr-x 1 root root 203072 Nov 10 2020 grep + -rwxr-xr-x 2 root root 2346 Mar 3 2021 gunzip + -rwxr-xr-x 1 root root 6376 Mar 3 2021 gzexe + -rwxr-xr-x 1 root root 98048 Mar 3 2021 gzip + -rwxr-xr-x 1 root root 22600 Nov 8 2019 hostname + -rwxr-xr-x 1 root root 72840 Sep 24 2020 ln + -rwxr-xr-x 1 root root 56952 Feb 8 2020 login + -rwxr-xr-x 1 root root 147176 Sep 24 2020 ls + -rwxr-xr-x 1 root root 149736 Jul 29 09:09 lsblk + -rwxr-xr-x 1 root root 85184 Sep 24 2020 mkdir + -rwxr-xr-x 1 root root 76896 Sep 24 2020 mknod + -rwxr-xr-x 1 root root 48064 Sep 24 2020 mktemp + -rwxr-xr-x 1 root root 59632 Jul 29 09:09 more + -rwsr-xr-x 1 root root 55528 Jul 29 09:09 mount + -rwxr-xr-x 1 root root 18664 Jul 29 09:09 mountpoint + -rwxr-xr-x 1 root root 147080 Sep 24 2020 mv + lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 19 2021 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 43872 Sep 24 2020 pwd + lrwxrwxrwx 1 root root 4 Aug 5 10:25 rbash -> bash + -rwxr-xr-x 1 root root 52032 Sep 24 2020 readlink + -rwxr-xr-x 1 root root 72704 Sep 24 2020 rm + -rwxr-xr-x 1 root root 52032 Sep 24 2020 rmdir + -rwxr-xr-x 1 root root 27472 Sep 28 2020 run-parts + -rwxr-xr-x 1 root root 122224 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Jan 24 04:56 sh -> bash + lrwxrwxrwx 1 root root 4 Jan 21 23:25 sh.distrib -> dash + -rwxr-xr-x 1 root root 43808 Sep 24 2020 sleep + -rwxr-xr-x 1 root root 84928 Sep 24 2020 stty + -rwsr-xr-x 1 root root 71912 Jul 29 09:09 su + -rwxr-xr-x 1 root root 39744 Sep 24 2020 sync + -rwxr-xr-x 1 root root 531928 Feb 17 2021 tar + -rwxr-xr-x 1 root root 14456 Sep 28 2020 tempfile + -rwxr-xr-x 1 root root 101408 Sep 24 2020 touch + -rwxr-xr-x 1 root root 39680 Sep 24 2020 true + -rwxr-xr-x 1 root root 14328 Feb 27 2021 ulockmgr_server + -rwsr-xr-x 1 root root 35040 Jul 29 09:09 umount + -rwxr-xr-x 1 root root 39744 Sep 24 2020 uname + -rwxr-xr-x 2 root root 2346 Mar 3 2021 uncompress + -rwxr-xr-x 1 root root 147176 Sep 24 2020 vdir + -rwxr-xr-x 1 root root 63744 Jul 29 09:09 wdctl + lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Mar 3 2021 zcat + -rwxr-xr-x 1 root root 1678 Mar 3 2021 zcmp + -rwxr-xr-x 1 root root 5880 Mar 3 2021 zdiff + -rwxr-xr-x 1 root root 29 Mar 3 2021 zegrep + -rwxr-xr-x 1 root root 29 Mar 3 2021 zfgrep + -rwxr-xr-x 1 root root 2081 Mar 3 2021 zforce + -rwxr-xr-x 1 root root 7585 Mar 3 2021 zgrep + -rwxr-xr-x 1 root root 2206 Mar 3 2021 zless + -rwxr-xr-x 1 root root 1842 Mar 3 2021 zmore + -rwxr-xr-x 1 root root 4553 Mar 3 2021 znew +I: user script /srv/workspace/pbuilder/930990/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -402,7 +436,7 @@ Get: 187 http://deb.debian.org/debian bullseye/main amd64 markdown all 1.0.1-10.1 [17.5 kB] Get: 188 http://deb.debian.org/debian bullseye/main amd64 maven-repo-helper all 1.10 [142 kB] Get: 189 http://deb.debian.org/debian bullseye/main amd64 python3-all amd64 3.9.2-3 [1056 B] -Fetched 346 MB in 4s (91.3 MB/s) +Fetched 346 MB in 4s (82.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19655 files and directories currently installed.) @@ -1354,7 +1388,8 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/ngs-sdk-2.10.9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ngs-sdk_2.10.9-1_source.changes +hostname: Name or service not known +I: Running cd /build/ngs-sdk-2.10.9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../ngs-sdk_2.10.9-1_source.changes dpkg-buildpackage: info: source package ngs-sdk dpkg-buildpackage: info: source version 2.10.9-1 dpkg-buildpackage: info: source distribution unstable @@ -1403,7 +1438,7 @@ checking for g++... yes checking for Python 3... /usr/bin/python3 checking whether gcc accepts -Wno-array-bounds... yes -checking whether g++ accepts -static-libstdc++... no +checking whether g++ accepts -static-libstdc++... yes configure: creating 'ld.linux.exe_cmd.sh' configure: creating 'Makefile.config.linux.x86_64' @@ -1457,7 +1492,7 @@ checking for g++... yes checking for Python 3... /usr/bin/python3 checking whether gcc accepts -Wno-array-bounds... yes -checking whether g++ accepts -static-libstdc++... no +checking whether g++ accepts -static-libstdc++... yes checking for ngs-sdk package... configure: optional ngs-sdk package not found: skipped. checking for ncbi-vdb package... @@ -1487,7 +1522,7 @@ echo "DEBPKGNAME: EBPKGNAME" DEBPKGNAME: EBPKGNAME dh_auto_build --sourcedirectory=ngs-sdk - cd ngs-sdk && make -j16 + cd ngs-sdk && make -j15 make[2]: Entering directory '/build/ngs-sdk-2.10.9/ngs-sdk' make[3]: Entering directory '/build/ngs-sdk-2.10.9/ngs-sdk/dispatch' make[3]: Entering directory '/build/ngs-sdk-2.10.9/ngs-sdk/adapter' @@ -1498,114 +1533,114 @@ mkdir -p /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/ilib mkdir -p /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/ReadCollectionItf.pic.o ReadCollectionItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD -mkdir -p /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/lib g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/ReferenceItf.pic.o ReferenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD -mkdir -p /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/ReadCollectionItf.pic.o ReadCollectionItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/ReferenceSequenceItf.pic.o ReferenceSequenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/PileupItf.pic.o PileupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/PileupItf.pic.o PileupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/PileupEventItf.pic.o PileupEventItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/PileupEventItf.pic.o PileupEventItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/ReferenceItf.pic.o ReferenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD -mkdir -p /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++ g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/AlignmentItf.pic.o AlignmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/ReferenceSequenceItf.pic.o ReferenceSequenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD -mkdir -p /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/ReadCollection.pic.o ReadCollection.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/ReferenceSequence.pic.o ReferenceSequence.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/ReadGroupItf.pic.o ReadGroupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/ReadItf.pic.o ReadItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD +mkdir -p /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/lib +mkdir -p /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python +mkdir -p /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter +mkdir -p /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++ +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/FragmentItf.pic.o FragmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_AlignmentItf.pic.o py_AlignmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_AlignmentIteratorItf.pic.o py_AlignmentIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/ReadCollection.pic.o ReadCollection.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/ReadCollectionItf.pic.o ReadCollectionItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/PileupItf.pic.o PileupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD mkdir -p /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_ReadCollectionItf.pic.o jni_ReadCollectionItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/AlignmentItf.pic.o AlignmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/ReadGroupItf.pic.o ReadGroupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/ReadItf.pic.o ReadItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/FragmentItf.pic.o FragmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/ReferenceIterator.pic.o ReferenceIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/StatisticsItf.pic.o StatisticsItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/ReadItf.pic.o ReadItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/Reference.pic.o Reference.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/FragmentItf.pic.o FragmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_FragmentItf.pic.o py_FragmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/PileupEventItf.pic.o PileupEventItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/StatisticsItf.pic.o StatisticsItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_ReferenceIteratorItf.pic.o jni_ReferenceIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/StringItf.pic.o StringItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/ReferenceSequence.pic.o ReferenceSequence.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/ReferenceItf.pic.o ReferenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/PackageItf.pic.o PackageItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/Refcount.pic.o Refcount.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/ErrorMsg.pic.o ErrorMsg.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_AlignmentIteratorItf.pic.o py_AlignmentIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/ErrBlock.pic.o ErrBlock.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_FragmentItf.pic.o py_FragmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_FragmentIteratorItf.pic.o py_FragmentIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/StringItf.pic.o StringItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/Refcount.pic.o Refcount.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/PileupIterator.pic.o PileupIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/Pileup.pic.o Pileup.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/VTable.pic.o VTable.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_PackageItf.pic.o py_PackageItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/ReferenceSequenceItf.pic.o ReferenceSequenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/ErrBlock.pic.o ErrBlock.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/ErrorMsg.pic.o ErrorMsg.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_FragmentIteratorItf.pic.o py_FragmentIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_ReferenceItf.pic.o jni_ReferenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/PileupEventIterator.pic.o PileupEventIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_PackageItf.pic.o py_PackageItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_ReferenceSequenceItf.pic.o jni_ReferenceSequenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_ReferenceIteratorItf.pic.o jni_ReferenceIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/ReferenceIterator.pic.o ReferenceIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_PileupEventItf.pic.o py_PileupEventItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD -ar rc /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/lib/libngs-adapt-c++.a.2.10.9 /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/ReadCollectionItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/PileupItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/PileupEventItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/ReferenceItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/ReferenceSequenceItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/AlignmentItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/ReadGroupItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/ReadItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/FragmentItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/StatisticsItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/StringItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/Refcount.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/ErrorMsg.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/ErrBlock.pic.o -rm -f /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/lib/libngs-adapt-c++.a.2 -ln -s libngs-adapt-c++.a.2.10.9 /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/lib/libngs-adapt-c++.a.2 -rm -f /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/lib/libngs-adapt-c++.a -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/PileupEvent.pic.o PileupEvent.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD -ln -s libngs-adapt-c++.a.2 /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/lib/libngs-adapt-c++.a -rm -f /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/lib/libngs-adapt-c++-static.a -ln -s libngs-adapt-c++.a /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/lib/libngs-adapt-c++-static.a -make[3]: Leaving directory '/build/ngs-sdk-2.10.9/ngs-sdk/adapter' -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/AlignmentIterator.pic.o AlignmentIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/Alignment.pic.o Alignment.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_PileupEventIteratorItf.pic.o py_PileupEventIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/AlignmentItf.pic.o AlignmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/ReadGroupItf.pic.o ReadGroupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/ReadItf.pic.o ReadItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_ReferenceItf.pic.o jni_ReferenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_ReferenceSequenceItf.pic.o jni_ReferenceSequenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/Reference.pic.o Reference.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/FragmentItf.pic.o FragmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/PileupIterator.pic.o PileupIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_PileupItf.pic.o py_PileupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_PileupIteratorItf.pic.o py_PileupIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/StatisticsItf.pic.o StatisticsItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/StringItf.pic.o StringItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/Refcount.pic.o Refcount.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD +ar rc /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/ilib/libngs-disp.a /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/ReadCollectionItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/ReferenceItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/ReferenceSequenceItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/PileupItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/PileupEventItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/AlignmentItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/ReadGroupItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/ReadItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/FragmentItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/StatisticsItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/PackageItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/StringItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/Refcount.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/VTable.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/ErrBlock.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/ErrorMsg.pic.o +make[3]: Leaving directory '/build/ngs-sdk-2.10.9/ngs-sdk/dispatch' g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_PileupIteratorItf.pic.o jni_PileupIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_PileupItf.pic.o jni_PileupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/ReadGroupIterator.pic.o ReadGroupIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/ErrorMsg.pic.o ErrorMsg.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_PileupEventIteratorItf.pic.o jni_PileupEventIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/ReadGroup.pic.o ReadGroup.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD -ar rc /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/ilib/libngs-disp.a /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/ReadCollectionItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/ReferenceItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/ReferenceSequenceItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/PileupItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/PileupEventItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/AlignmentItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/ReadGroupItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/ReadItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/FragmentItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/StatisticsItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/PackageItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/StringItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/Refcount.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/VTable.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/ErrBlock.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/ErrorMsg.pic.o -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_PileupItf.pic.o py_PileupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD -make[3]: Leaving directory '/build/ngs-sdk-2.10.9/ngs-sdk/dispatch' -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_PileupIteratorItf.pic.o py_PileupIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/ReadIterator.pic.o ReadIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_ReadCollectionItf.pic.o py_ReadCollectionItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_PileupEventItf.pic.o jni_PileupEventItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/ErrBlock.pic.o ErrBlock.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_ReadGroupItf.pic.o py_ReadGroupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/Read.pic.o Read.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_AlignmentIteratorItf.pic.o jni_AlignmentIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/FragmentIterator.pic.o FragmentIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/Fragment.pic.o Fragment.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/Pileup.pic.o Pileup.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/PileupEventIterator.pic.o PileupEventIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_PileupEventItf.pic.o jni_PileupEventItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_ReadGroupIteratorItf.pic.o py_ReadGroupIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/PileupEvent.pic.o PileupEvent.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/AlignmentIterator.pic.o AlignmentIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_AlignmentIteratorItf.pic.o jni_AlignmentIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_AlignmentItf.pic.o jni_AlignmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_ReadGroupIteratorItf.pic.o jni_ReadGroupIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD +ar rc /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/lib/libngs-adapt-c++.a.2.10.9 /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/ReadCollectionItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/PileupItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/PileupEventItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/ReferenceItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/ReferenceSequenceItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/AlignmentItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/ReadGroupItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/ReadItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/FragmentItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/StatisticsItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/StringItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/Refcount.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/ErrorMsg.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/ErrBlock.pic.o +rm -f /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/lib/libngs-adapt-c++.a.2 g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_ReadItf.pic.o py_ReadItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/Statistics.pic.o Statistics.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD +ln -s libngs-adapt-c++.a.2.10.9 /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/lib/libngs-adapt-c++.a.2 +rm -f /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/lib/libngs-adapt-c++.a +ln -s libngs-adapt-c++.a.2 /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/lib/libngs-adapt-c++.a g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_ReadIteratorItf.pic.o py_ReadIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_ReadGroupItf.pic.o jni_ReadGroupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_ReferenceItf.pic.o py_ReferenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/StringRef.pic.o StringRef.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD +rm -f /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/lib/libngs-adapt-c++-static.a +ln -s libngs-adapt-c++.a /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/lib/libngs-adapt-c++-static.a +make[3]: Leaving directory '/build/ngs-sdk-2.10.9/ngs-sdk/adapter' g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_ReadIteratorItf.pic.o jni_ReadIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_ReadItf.pic.o jni_ReadItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_ReferenceIteratorItf.pic.o py_ReferenceIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_ReferenceSequenceItf.pic.o py_ReferenceSequenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/Alignment.pic.o Alignment.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/ReadGroupIterator.pic.o ReadGroupIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/ReadGroup.pic.o ReadGroup.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_FragmentItf.pic.o jni_FragmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_ReferenceIteratorItf.pic.o py_ReferenceIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_StatisticsItf.pic.o jni_StatisticsItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_StatisticsItf.pic.o py_StatisticsItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_ReferenceSequenceItf.pic.o py_ReferenceSequenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/ReadIterator.pic.o ReadIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_Package.pic.o jni_Package.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_Refcount.pic.o py_Refcount.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_String.pic.o jni_String.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_StringItf.pic.o py_StringItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_StatisticsItf.pic.o py_StatisticsItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_Refcount.pic.o jni_Refcount.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_ErrorMsg.pic.o jni_ErrorMsg.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD -ar rc /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/ilib/libngs-bind-c++.a /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/ReadCollection.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/ReferenceSequence.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/ReferenceIterator.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/Reference.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/PileupIterator.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/Pileup.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/PileupEventIterator.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/PileupEvent.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/AlignmentIterator.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/Alignment.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/ReadGroupIterator.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/ReadGroup.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/ReadIterator.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/Read.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/FragmentIterator.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/Fragment.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/Statistics.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/StringRef.pic.o -make[4]: Leaving directory '/build/ngs-sdk-2.10.9/ngs-sdk/language/c++' -ar rc /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/ilib/libngs-bind-python.a /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_AlignmentItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_AlignmentIteratorItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_FragmentItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_FragmentIteratorItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_PackageItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_PileupEventItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_PileupEventIteratorItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_PileupItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_PileupIteratorItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_ReadCollectionItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_ReadGroupItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_ReadGroupIteratorItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_ReadItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_ReadIteratorItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_ReferenceItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_ReferenceIteratorItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_ReferenceSequenceItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_StatisticsItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_Refcount.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_StringItf.pic.o -make[4]: Leaving directory '/build/ngs-sdk-2.10.9/ngs-sdk/language/python' +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/Read.pic.o Read.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_Refcount.pic.o py_Refcount.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/FragmentIterator.pic.o FragmentIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/Fragment.pic.o Fragment.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_StringItf.pic.o py_StringItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/Statistics.pic.o Statistics.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/StringRef.pic.o StringRef.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD ar rc /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/ilib/libngs-bind-java.a /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_ReadCollectionItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_ReferenceIteratorItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_ReferenceItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_ReferenceSequenceItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_PileupIteratorItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_PileupItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_PileupEventIteratorItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_PileupEventItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_AlignmentIteratorItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_AlignmentItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_ReadGroupIteratorItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_ReadGroupItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_ReadIteratorItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_ReadItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_FragmentItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_StatisticsItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_Package.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_String.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_Refcount.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_ErrorMsg.pic.o make[4]: Leaving directory '/build/ngs-sdk-2.10.9/ngs-sdk/language/java' +ar rc /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/ilib/libngs-bind-python.a /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_AlignmentItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_AlignmentIteratorItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_FragmentItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_FragmentIteratorItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_PackageItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_PileupEventItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_PileupEventIteratorItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_PileupItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_PileupIteratorItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_ReadCollectionItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_ReadGroupItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_ReadGroupIteratorItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_ReadItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_ReadIteratorItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_ReferenceItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_ReferenceIteratorItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_ReferenceSequenceItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_StatisticsItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_Refcount.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_StringItf.pic.o +make[4]: Leaving directory '/build/ngs-sdk-2.10.9/ngs-sdk/language/python' +ar rc /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/ilib/libngs-bind-c++.a /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/ReadCollection.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/ReferenceSequence.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/ReferenceIterator.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/Reference.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/PileupIterator.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/Pileup.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/PileupEventIterator.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/PileupEvent.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/AlignmentIterator.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/Alignment.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/ReadGroupIterator.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/ReadGroup.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/ReadIterator.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/Read.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/FragmentIterator.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/Fragment.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/Statistics.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/StringRef.pic.o +make[4]: Leaving directory '/build/ngs-sdk-2.10.9/ngs-sdk/language/c++' make[3]: Leaving directory '/build/ngs-sdk-2.10.9/ngs-sdk/language' make[3]: Entering directory '/build/ngs-sdk-2.10.9/ngs-sdk' rm -rf /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-bind-c++ @@ -1613,12 +1648,12 @@ mkdir -p /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-bind-c++ mkdir -p /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-disp rm -rf /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-bind-java -rm -rf /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-bind-python ( cd /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-bind-c++; ar x /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/ilib/libngs-bind-c++.a; ar t /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/ilib/libngs-bind-c++.a | sed -e '/__\.SYMDEF/d' -e 's/^\(..*\)$/\/build\/ngs-sdk-2.10.9\/ngs-sdk\/x86_64-linux-gnu\/ngs-sdk\/linux\/gcc\/x86_64\/rel\/obj\/ngs-bind-c++\/\1/' > /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-bind-c++/manifest ) ( cd /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-disp; ar x /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/ilib/libngs-disp.a; ar t /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/ilib/libngs-disp.a | sed -e '/__\.SYMDEF/d' -e 's/^\(..*\)$/\/build\/ngs-sdk-2.10.9\/ngs-sdk\/x86_64-linux-gnu\/ngs-sdk\/linux\/gcc\/x86_64\/rel\/obj\/ngs-disp\/\1/' > /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-disp/manifest ) mkdir -p /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-bind-java -mkdir -p /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-bind-python +rm -rf /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-bind-python ( cd /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-bind-java; ar x /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/ilib/libngs-bind-java.a; ar t /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/ilib/libngs-bind-java.a | sed -e '/__\.SYMDEF/d' -e 's/^\(..*\)$/\/build\/ngs-sdk-2.10.9\/ngs-sdk\/x86_64-linux-gnu\/ngs-sdk\/linux\/gcc\/x86_64\/rel\/obj\/ngs-bind-java\/\1/' > /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-bind-java/manifest ) +mkdir -p /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-bind-python ( cd /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-bind-python; ar x /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/ilib/libngs-bind-python.a; ar t /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/ilib/libngs-bind-python.a | sed -e '/__\.SYMDEF/d' -e 's/^\(..*\)$/\/build\/ngs-sdk-2.10.9\/ngs-sdk\/x86_64-linux-gnu\/ngs-sdk\/linux\/gcc\/x86_64\/rel\/obj\/ngs-bind-python\/\1/' > /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-bind-python/manifest ) ( ar rc /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/lib/libngs-c++.a.2.10.9 `cat /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-bind-c++/manifest /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-disp/manifest` ) g++ -DNDEBUG -O3 -shared -o /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/lib/libngs-sdk.so.2.10.9 -Wl,-soname=libngs-sdk.so.2 `cat /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-bind-java/manifest /build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-bind-python/manifest` -L/build/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/ilib -lngs-disp @@ -1639,7 +1674,7 @@ #cd ngs-bam && LD_LIBRARY_PATH=../ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/*/rel/lib ./configure --build=x86_64-linux-gnu --prefix=/usr --with-ngs-sdk-prefix=../ngs-sdk #dh_auto_build --sourcedirectory=ngs-bam dh_auto_build --sourcedirectory=ngs-java -- JAVAC="javac -source 1.7 -target 1.7" - cd ngs-java && make -j16 "JAVAC=javac -source 1.7 -target 1.7" + cd ngs-java && make -j15 "JAVAC=javac -source 1.7 -target 1.7" make[2]: Entering directory '/build/ngs-sdk-2.10.9/ngs-java' make[3]: Entering directory '/build/ngs-sdk-2.10.9/ngs-java' mkdir -p /build/ngs-sdk-2.10.9/ngs-java/x86_64-linux-gnu/ngs-java/jar @@ -1658,11 +1693,11 @@ Note: Recompile with -Xlint:deprecation for details. 1 warning ( cd /build/ngs-sdk-2.10.9/ngs-java/x86_64-linux-gnu/ngs-java/cls; jar cf /build/ngs-sdk-2.10.9/ngs-java/x86_64-linux-gnu/ngs-java/jar/ngs-examples.jar `find examples -name "*.class"`; chmod -x,o-w,g+w /build/ngs-sdk-2.10.9/ngs-java/x86_64-linux-gnu/ngs-java/jar/ngs-examples.jar ) || ( rm -f /build/ngs-sdk-2.10.9/ngs-java/x86_64-linux-gnu/ngs-java/jar/ngs-examples.jar && false ) +( cd /build/ngs-sdk-2.10.9/ngs-java/x86_64-linux-gnu/ngs-java/jar/javadoc ; jar cf /build/ngs-sdk-2.10.9/ngs-java/x86_64-linux-gnu/ngs-java/jar/ngs-doc.jar `find . -type f`; chmod -x,o-w,g+w /build/ngs-sdk-2.10.9/ngs-java/x86_64-linux-gnu/ngs-java/jar/ngs-doc.jar ) || ( rm -f /build/ngs-sdk-2.10.9/ngs-java/x86_64-linux-gnu/ngs-java/jar/ngs-doc.jar && false ) Note: /build/ngs-sdk-2.10.9/ngs-java/ngs/itf/Refcount.java uses or overrides a deprecated API. Note: Recompile with -Xlint:deprecation for details. 1 warning javac -source 1.7 -target 1.7 /build/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/DownloadManager.java /build/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/FileCreator.java /build/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/HttpManager.java /build/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/LibDependencies.java /build/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/LibManager.java /build/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/LibPathIterator.java /build/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/LibVersionChecker.java /build/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/LMProperties.java /build/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/Logger.java /build/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/Manager.java /build/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/NGS.java /build/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/Version.java /build/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/error/LibraryLoadError.java /build/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/error/LibraryNotFoundError.java /build/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/error/LibraryIncompatibleVersionError.java /build/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/error/cause/ConnectionProblemCause.java /build/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/error/cause/DownloadDisabledCause.java /build/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/error/cause/InvalidLibraryCause.java /build/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/error/cause/JvmErrorCause.java /build/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/error/cause/LibraryLoadCause.java /build/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/error/cause/OutdatedJarCause.java /build/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/error/cause/PrereleaseReqLibCause.java /build/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/error/cause/UnsupportedArchCause.java -d /build/ngs-sdk-2.10.9/ngs-java/x86_64-linux-gnu/ngs-java/cls -classpath /build/ngs-sdk-2.10.9/ngs-java/x86_64-linux-gnu/ngs-java/cls -sourcepath /build/ngs-sdk-2.10.9/ngs-java/:/build/ngs-sdk-2.10.9/ngs-java//itf:/build/ngs-sdk-2.10.9/ngs-java/gov/nih/nlm/ncbi/ngs && touch /build/ngs-sdk-2.10.9/ngs-java/x86_64-linux-gnu/ngs-java/cls/ngs-java-ncbi -( cd /build/ngs-sdk-2.10.9/ngs-java/x86_64-linux-gnu/ngs-java/jar/javadoc ; jar cf /build/ngs-sdk-2.10.9/ngs-java/x86_64-linux-gnu/ngs-java/jar/ngs-doc.jar `find . -type f`; chmod -x,o-w,g+w /build/ngs-sdk-2.10.9/ngs-java/x86_64-linux-gnu/ngs-java/jar/ngs-doc.jar ) || ( rm -f /build/ngs-sdk-2.10.9/ngs-java/x86_64-linux-gnu/ngs-java/jar/ngs-doc.jar && false ) warning: [options] bootstrap class path not set in conjunction with -source 7 1 warning ( cd /build/ngs-sdk-2.10.9/ngs-java/x86_64-linux-gnu/ngs-java/cls; jar cf /build/ngs-sdk-2.10.9/ngs-java/x86_64-linux-gnu/ngs-java/jar/ngs-java.jar `find . -name "*.class"`; chmod -x,o-w,g+w /build/ngs-sdk-2.10.9/ngs-java/x86_64-linux-gnu/ngs-java/jar/ngs-java.jar ) || ( rm -f /build/ngs-sdk-2.10.9/ngs-java/x86_64-linux-gnu/ngs-java/jar/ngs-java.jar && false ) @@ -1857,12 +1892,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/930990/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/930990/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3023752 and its subdirectories -I: Current time: Sat Feb 25 09:19:15 -12 2023 -I: pbuilder-time-stamp: 1677359955 +I: removing directory /srv/workspace/pbuilder/930990 and its subdirectories +I: Current time: Mon Jan 24 04:57:51 +14 2022 +I: pbuilder-time-stamp: 1642949871