Diff of the two buildlogs: -- --- b1/build.log 2021-12-28 13:03:00.371407512 +0000 +++ b2/build.log 2021-12-28 13:09:34.279108245 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Jan 30 07:19:03 -12 2023 -I: pbuilder-time-stamp: 1675106343 +I: Current time: Wed Dec 29 03:03:02 +14 2021 +I: pbuilder-time-stamp: 1640696582 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -16,8 +16,8 @@ I: copying [./lambda-align_1.0.3-6.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.j5G91aJW/trustedkeys.kbx': General error -gpgv: Signature made Sat Feb 8 03:33:49 2020 -12 +gpgv: keyblock resource '/tmp/dpkg-verify-sig.Ew7IdwSr/trustedkeys.kbx': General error +gpgv: Signature made Sun Feb 9 05:33:49 2020 +14 gpgv: using RSA key 8451F9178172E7E2DC73F79551F84A8FECCA7E09 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./lambda-align_1.0.3-6.dsc @@ -29,135 +29,169 @@ dpkg-source: info: applying force-link-rt-pthread.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/374625/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1742152/tmp/hooks/D01_modify_environment starting +debug: Running on ionos11-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1742152/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1742152/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=16' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=15' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='bcb125f8a3824deeb23f0cbd34893117' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='374625' - PS1='# ' - PS2='> ' + INVOCATION_ID=55dbed47be764bcc8deff378951e7b31 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1742152 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.ry9deX8TbF/pbuilderrc_TxGr --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.ry9deX8TbF/b1 --logfile b1/build.log lambda-align_1.0.3-6.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://85.184.249.68:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.ry9deX8TbF/pbuilderrc_OIwp --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.ry9deX8TbF/b2 --logfile b2/build.log lambda-align_1.0.3-6.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://78.137.99.97:3128 I: uname -a - Linux ionos15-amd64 5.14.0-0.bpo.2-amd64 #1 SMP Debian 5.14.9-2~bpo11+1 (2021-10-10) x86_64 GNU/Linux + Linux i-capture-the-hostname 5.10.0-10-amd64 #1 SMP Debian 5.10.84-1 (2021-12-08) x86_64 GNU/Linux I: ls -l /bin total 5476 - -rwxr-xr-x 1 root root 1234376 Aug 4 2021 bash - -rwxr-xr-x 3 root root 38984 Jul 20 2020 bunzip2 - -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzcat - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep - -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzip2 - -rwxr-xr-x 1 root root 18424 Jul 20 2020 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore - -rwxr-xr-x 1 root root 43936 Sep 23 2020 cat - -rwxr-xr-x 1 root root 72672 Sep 23 2020 chgrp - -rwxr-xr-x 1 root root 64448 Sep 23 2020 chmod - -rwxr-xr-x 1 root root 72672 Sep 23 2020 chown - -rwxr-xr-x 1 root root 151168 Sep 23 2020 cp - -rwxr-xr-x 1 root root 125560 Dec 10 2020 dash - -rwxr-xr-x 1 root root 113664 Sep 23 2020 date - -rwxr-xr-x 1 root root 80968 Sep 23 2020 dd - -rwxr-xr-x 1 root root 93936 Sep 23 2020 df - -rwxr-xr-x 1 root root 147176 Sep 23 2020 dir - -rwxr-xr-x 1 root root 84440 Jul 28 2021 dmesg - lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname - -rwxr-xr-x 1 root root 39712 Sep 23 2020 echo - -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep - -rwxr-xr-x 1 root root 39680 Sep 23 2020 false - -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep - -rwxr-xr-x 1 root root 69032 Jul 28 2021 findmnt - -rwsr-xr-x 1 root root 34896 Feb 26 2021 fusermount - -rwxr-xr-x 1 root root 203072 Nov 9 2020 grep - -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip - -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe - -rwxr-xr-x 1 root root 98048 Mar 2 2021 gzip - -rwxr-xr-x 1 root root 22600 Nov 6 2019 hostname - -rwxr-xr-x 1 root root 72840 Sep 23 2020 ln - -rwxr-xr-x 1 root root 56952 Feb 7 2020 login - -rwxr-xr-x 1 root root 147176 Sep 23 2020 ls - -rwxr-xr-x 1 root root 149736 Jul 28 2021 lsblk - -rwxr-xr-x 1 root root 85184 Sep 23 2020 mkdir - -rwxr-xr-x 1 root root 76896 Sep 23 2020 mknod - -rwxr-xr-x 1 root root 48064 Sep 23 2020 mktemp - -rwxr-xr-x 1 root root 59632 Jul 28 2021 more - -rwsr-xr-x 1 root root 55528 Jul 28 2021 mount - -rwxr-xr-x 1 root root 18664 Jul 28 2021 mountpoint - -rwxr-xr-x 1 root root 147080 Sep 23 2020 mv - lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 43872 Sep 23 2020 pwd - lrwxrwxrwx 1 root root 4 Aug 4 2021 rbash -> bash - -rwxr-xr-x 1 root root 52032 Sep 23 2020 readlink - -rwxr-xr-x 1 root root 72704 Sep 23 2020 rm - -rwxr-xr-x 1 root root 52032 Sep 23 2020 rmdir - -rwxr-xr-x 1 root root 27472 Sep 27 2020 run-parts - -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Jan 23 03:47 sh -> dash - -rwxr-xr-x 1 root root 43808 Sep 23 2020 sleep - -rwxr-xr-x 1 root root 84928 Sep 23 2020 stty - -rwsr-xr-x 1 root root 71912 Jul 28 2021 su - -rwxr-xr-x 1 root root 39744 Sep 23 2020 sync - -rwxr-xr-x 1 root root 531928 Feb 16 2021 tar - -rwxr-xr-x 1 root root 14456 Sep 27 2020 tempfile - -rwxr-xr-x 1 root root 101408 Sep 23 2020 touch - -rwxr-xr-x 1 root root 39680 Sep 23 2020 true - -rwxr-xr-x 1 root root 14328 Feb 26 2021 ulockmgr_server - -rwsr-xr-x 1 root root 35040 Jul 28 2021 umount - -rwxr-xr-x 1 root root 39744 Sep 23 2020 uname - -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress - -rwxr-xr-x 1 root root 147176 Sep 23 2020 vdir - -rwxr-xr-x 1 root root 63744 Jul 28 2021 wdctl - lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat - -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp - -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff - -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep - -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep - -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce - -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep - -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless - -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore - -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew -I: user script /srv/workspace/pbuilder/374625/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1234376 Aug 5 10:25 bash + -rwxr-xr-x 3 root root 38984 Jul 21 2020 bunzip2 + -rwxr-xr-x 3 root root 38984 Jul 21 2020 bzcat + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep + -rwxr-xr-x 3 root root 38984 Jul 21 2020 bzip2 + -rwxr-xr-x 1 root root 18424 Jul 21 2020 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore + -rwxr-xr-x 1 root root 43936 Sep 24 2020 cat + -rwxr-xr-x 1 root root 72672 Sep 24 2020 chgrp + -rwxr-xr-x 1 root root 64448 Sep 24 2020 chmod + -rwxr-xr-x 1 root root 72672 Sep 24 2020 chown + -rwxr-xr-x 1 root root 151168 Sep 24 2020 cp + -rwxr-xr-x 1 root root 125560 Dec 11 2020 dash + -rwxr-xr-x 1 root root 113664 Sep 24 2020 date + -rwxr-xr-x 1 root root 80968 Sep 24 2020 dd + -rwxr-xr-x 1 root root 93936 Sep 24 2020 df + -rwxr-xr-x 1 root root 147176 Sep 24 2020 dir + -rwxr-xr-x 1 root root 84440 Jul 29 09:09 dmesg + lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname + -rwxr-xr-x 1 root root 39712 Sep 24 2020 echo + -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep + -rwxr-xr-x 1 root root 39680 Sep 24 2020 false + -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep + -rwxr-xr-x 1 root root 69032 Jul 29 09:09 findmnt + -rwsr-xr-x 1 root root 34896 Feb 27 2021 fusermount + -rwxr-xr-x 1 root root 203072 Nov 10 2020 grep + -rwxr-xr-x 2 root root 2346 Mar 3 2021 gunzip + -rwxr-xr-x 1 root root 6376 Mar 3 2021 gzexe + -rwxr-xr-x 1 root root 98048 Mar 3 2021 gzip + -rwxr-xr-x 1 root root 22600 Nov 8 2019 hostname + -rwxr-xr-x 1 root root 72840 Sep 24 2020 ln + -rwxr-xr-x 1 root root 56952 Feb 8 2020 login + -rwxr-xr-x 1 root root 147176 Sep 24 2020 ls + -rwxr-xr-x 1 root root 149736 Jul 29 09:09 lsblk + -rwxr-xr-x 1 root root 85184 Sep 24 2020 mkdir + -rwxr-xr-x 1 root root 76896 Sep 24 2020 mknod + -rwxr-xr-x 1 root root 48064 Sep 24 2020 mktemp + -rwxr-xr-x 1 root root 59632 Jul 29 09:09 more + -rwsr-xr-x 1 root root 55528 Jul 29 09:09 mount + -rwxr-xr-x 1 root root 18664 Jul 29 09:09 mountpoint + -rwxr-xr-x 1 root root 147080 Sep 24 2020 mv + lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 19 2021 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 43872 Sep 24 2020 pwd + lrwxrwxrwx 1 root root 4 Aug 5 10:25 rbash -> bash + -rwxr-xr-x 1 root root 52032 Sep 24 2020 readlink + -rwxr-xr-x 1 root root 72704 Sep 24 2020 rm + -rwxr-xr-x 1 root root 52032 Sep 24 2020 rmdir + -rwxr-xr-x 1 root root 27472 Sep 28 2020 run-parts + -rwxr-xr-x 1 root root 122224 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Dec 29 03:03 sh -> bash + lrwxrwxrwx 1 root root 4 Dec 21 23:24 sh.distrib -> dash + -rwxr-xr-x 1 root root 43808 Sep 24 2020 sleep + -rwxr-xr-x 1 root root 84928 Sep 24 2020 stty + -rwsr-xr-x 1 root root 71912 Jul 29 09:09 su + -rwxr-xr-x 1 root root 39744 Sep 24 2020 sync + -rwxr-xr-x 1 root root 531928 Feb 17 2021 tar + -rwxr-xr-x 1 root root 14456 Sep 28 2020 tempfile + -rwxr-xr-x 1 root root 101408 Sep 24 2020 touch + -rwxr-xr-x 1 root root 39680 Sep 24 2020 true + -rwxr-xr-x 1 root root 14328 Feb 27 2021 ulockmgr_server + -rwsr-xr-x 1 root root 35040 Jul 29 09:09 umount + -rwxr-xr-x 1 root root 39744 Sep 24 2020 uname + -rwxr-xr-x 2 root root 2346 Mar 3 2021 uncompress + -rwxr-xr-x 1 root root 147176 Sep 24 2020 vdir + -rwxr-xr-x 1 root root 63744 Jul 29 09:09 wdctl + lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Mar 3 2021 zcat + -rwxr-xr-x 1 root root 1678 Mar 3 2021 zcmp + -rwxr-xr-x 1 root root 5880 Mar 3 2021 zdiff + -rwxr-xr-x 1 root root 29 Mar 3 2021 zegrep + -rwxr-xr-x 1 root root 29 Mar 3 2021 zfgrep + -rwxr-xr-x 1 root root 2081 Mar 3 2021 zforce + -rwxr-xr-x 1 root root 7585 Mar 3 2021 zgrep + -rwxr-xr-x 1 root root 2206 Mar 3 2021 zless + -rwxr-xr-x 1 root root 1842 Mar 3 2021 zmore + -rwxr-xr-x 1 root root 4553 Mar 3 2021 znew +I: user script /srv/workspace/pbuilder/1742152/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -257,7 +291,7 @@ Get: 52 http://deb.debian.org/debian bullseye/main amd64 libseqan2-dev all 2.4.0+dfsg-14 [1220 kB] Get: 53 http://deb.debian.org/debian bullseye/main amd64 openssl amd64 1.1.1k-1+deb11u1 [851 kB] Get: 54 http://deb.debian.org/debian bullseye/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2 [190 kB] -Fetched 30.7 MB in 1s (40.1 MB/s) +Fetched 30.7 MB in 1s (50.9 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19655 files and directories currently installed.) @@ -494,7 +528,8 @@ fakeroot is already the newest version (1.25.3-1.1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/lambda-align-1.0.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../lambda-align_1.0.3-6_source.changes +hostname: Name or service not known +I: Running cd /build/lambda-align-1.0.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../lambda-align_1.0.3-6_source.changes dpkg-buildpackage: info: source package lambda-align dpkg-buildpackage: info: source version 1.0.3-6 dpkg-buildpackage: info: source distribution unstable @@ -561,34 +596,34 @@ -- Build files have been written to: /build/lambda-align-1.0.3/build make[1]: Leaving directory '/build/lambda-align-1.0.3' dh_auto_build -O--builddirectory=build - cd build && make -j16 "INSTALL=install --strip-program=true" VERBOSE=1 + cd build && make -j15 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/lambda-align-1.0.3/build' /usr/bin/cmake -S/build/lambda-align-1.0.3 -B/build/lambda-align-1.0.3/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/lambda-align-1.0.3/build/CMakeFiles /build/lambda-align-1.0.3/build//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/lambda-align-1.0.3/build' make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/depend +make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/depend make[3]: Entering directory '/build/lambda-align-1.0.3/build' cd /build/lambda-align-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/lambda-align-1.0.3 /build/lambda-align-1.0.3/src /build/lambda-align-1.0.3/build /build/lambda-align-1.0.3/build/src /build/lambda-align-1.0.3/build/src/CMakeFiles/lambda_indexer.dir/DependInfo.cmake --color= -make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/depend make[3]: Entering directory '/build/lambda-align-1.0.3/build' cd /build/lambda-align-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/lambda-align-1.0.3 /build/lambda-align-1.0.3/src /build/lambda-align-1.0.3/build /build/lambda-align-1.0.3/build/src /build/lambda-align-1.0.3/build/src/CMakeFiles/lambda.dir/DependInfo.cmake --color= -Dependee "/build/lambda-align-1.0.3/build/src/CMakeFiles/lambda_indexer.dir/DependInfo.cmake" is newer than depender "/build/lambda-align-1.0.3/build/src/CMakeFiles/lambda_indexer.dir/depend.internal". -Dependee "/build/lambda-align-1.0.3/build/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/lambda-align-1.0.3/build/src/CMakeFiles/lambda_indexer.dir/depend.internal". -Scanning dependencies of target lambda_indexer Dependee "/build/lambda-align-1.0.3/build/src/CMakeFiles/lambda.dir/DependInfo.cmake" is newer than depender "/build/lambda-align-1.0.3/build/src/CMakeFiles/lambda.dir/depend.internal". Dependee "/build/lambda-align-1.0.3/build/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/lambda-align-1.0.3/build/src/CMakeFiles/lambda.dir/depend.internal". -make[3]: Leaving directory '/build/lambda-align-1.0.3/build' -make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/build -make[3]: Entering directory '/build/lambda-align-1.0.3/build' Scanning dependencies of target lambda make[3]: Leaving directory '/build/lambda-align-1.0.3/build' make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/build make[3]: Entering directory '/build/lambda-align-1.0.3/build' +Dependee "/build/lambda-align-1.0.3/build/src/CMakeFiles/lambda_indexer.dir/DependInfo.cmake" is newer than depender "/build/lambda-align-1.0.3/build/src/CMakeFiles/lambda_indexer.dir/depend.internal". +Dependee "/build/lambda-align-1.0.3/build/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/lambda-align-1.0.3/build/src/CMakeFiles/lambda_indexer.dir/depend.internal". +Scanning dependencies of target lambda_indexer +make[3]: Leaving directory '/build/lambda-align-1.0.3/build' +make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/build +make[3]: Entering directory '/build/lambda-align-1.0.3/build' [ 25%] Building CXX object src/CMakeFiles/lambda.dir/lambda.cpp.o -cd /build/lambda-align-1.0.3/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"Release\" -DLAMBDA_MMAPPED_DB=1 -DSEQAN_APP_VERSION=\"1.0.2\" -DSEQAN_DATE=\"\" -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP="1 -DSEQAN_GLOBAL_EXCEPTION_HANDLER" -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -DSEQAN_VERSION_STRING=\"2.4.0\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -fdebug-prefix-map=/build/lambda-align-1.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -flto=16 -O3 -DNDEBUG -s -o CMakeFiles/lambda.dir/lambda.cpp.o -c /build/lambda-align-1.0.3/src/lambda.cpp +cd /build/lambda-align-1.0.3/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"Release\" -DLAMBDA_MMAPPED_DB=1 -DSEQAN_APP_VERSION=\"1.0.2\" -DSEQAN_DATE=\"\" -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP="1 -DSEQAN_GLOBAL_EXCEPTION_HANDLER" -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -DSEQAN_VERSION_STRING=\"2.4.0\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -fdebug-prefix-map=/build/lambda-align-1.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -flto=15 -O3 -DNDEBUG -s -o CMakeFiles/lambda.dir/lambda.cpp.o -c /build/lambda-align-1.0.3/src/lambda.cpp [ 50%] Building CXX object src/CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -cd /build/lambda-align-1.0.3/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"Release\" -DLAMBDA_MMAPPED_DB=1 -DSEQAN_APP_VERSION=\"1.0.2\" -DSEQAN_DATE=\"\" -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP="1 -DSEQAN_GLOBAL_EXCEPTION_HANDLER" -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -DSEQAN_VERSION_STRING=\"2.4.0\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -fdebug-prefix-map=/build/lambda-align-1.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -flto=16 -O3 -DNDEBUG -s -o CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -c /build/lambda-align-1.0.3/src/lambda_indexer.cpp +cd /build/lambda-align-1.0.3/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"Release\" -DLAMBDA_MMAPPED_DB=1 -DSEQAN_APP_VERSION=\"1.0.2\" -DSEQAN_DATE=\"\" -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP="1 -DSEQAN_GLOBAL_EXCEPTION_HANDLER" -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -DSEQAN_VERSION_STRING=\"2.4.0\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -fdebug-prefix-map=/build/lambda-align-1.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -flto=15 -O3 -DNDEBUG -s -o CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -c /build/lambda-align-1.0.3/src/lambda_indexer.cpp In file included from /build/lambda-align-1.0.3/src/lambda.cpp:32: /build/lambda-align-1.0.3/src/options.hpp:323:21: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 323 | setDate(parser, __DATE__); @@ -1576,12 +1611,12 @@ | ~~~~~~^~~~~~~~~~~ [ 75%] Linking CXX executable ../bin/lambda_indexer cd /build/lambda-align-1.0.3/build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/lambda_indexer.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/lambda-align-1.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -flto=16 -O3 -DNDEBUG -s -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -o ../bin/lambda_indexer -lrt -lz -lbz2 -lrt -lpthread -lz -lbz2 -lpthread +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/lambda-align-1.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -flto=15 -O3 -DNDEBUG -s -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -o ../bin/lambda_indexer -lrt -lz -lbz2 -lrt -lpthread -lz -lbz2 -lpthread make[3]: Leaving directory '/build/lambda-align-1.0.3/build' [ 75%] Built target lambda_indexer [100%] Linking CXX executable ../bin/lambda cd /build/lambda-align-1.0.3/build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/lambda.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/lambda-align-1.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -flto=16 -O3 -DNDEBUG -s -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/lambda.dir/lambda.cpp.o -o ../bin/lambda -lrt -lz -lbz2 -lrt -lpthread -lz -lbz2 -lpthread +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/lambda-align-1.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -flto=15 -O3 -DNDEBUG -s -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/lambda.dir/lambda.cpp.o -o ../bin/lambda -lrt -lz -lbz2 -lrt -lpthread -lz -lbz2 -lpthread make[3]: Leaving directory '/build/lambda-align-1.0.3/build' [100%] Built target lambda make[2]: Leaving directory '/build/lambda-align-1.0.3/build' @@ -1589,172 +1624,172 @@ make[1]: Leaving directory '/build/lambda-align-1.0.3/build' debian/rules override_dh_auto_test make[1]: Entering directory '/build/lambda-align-1.0.3' -cd build/tests && ctest 16 +cd build/tests && ctest 15 Test project /build/lambda-align-1.0.3/build/tests Start 1: test_mkindex_blastn_sa - 1/80 Test #1: test_mkindex_blastn_sa ........... Passed 0.27 sec + 1/80 Test #1: test_mkindex_blastn_sa ........... Passed 0.26 sec Start 2: test_mkindex_blastn_fm - 2/80 Test #2: test_mkindex_blastn_fm ........... Passed 0.34 sec + 2/80 Test #2: test_mkindex_blastn_fm ........... Passed 0.30 sec Start 3: test_mkindex_blastp_sa 3/80 Test #3: test_mkindex_blastp_sa ........... Passed 0.10 sec Start 4: test_mkindex_blastp_fm - 4/80 Test #4: test_mkindex_blastp_fm ........... Passed 0.17 sec + 4/80 Test #4: test_mkindex_blastp_fm ........... Passed 0.15 sec Start 5: test_mkindex_blastx_sa - 5/80 Test #5: test_mkindex_blastx_sa ........... Passed 0.13 sec + 5/80 Test #5: test_mkindex_blastx_sa ........... Passed 0.11 sec Start 6: test_mkindex_blastx_fm - 6/80 Test #6: test_mkindex_blastx_fm ........... Passed 0.14 sec + 6/80 Test #6: test_mkindex_blastx_fm ........... Passed 0.16 sec Start 7: test_mkindex_tblastn_sa - 7/80 Test #7: test_mkindex_tblastn_sa .......... Passed 0.32 sec + 7/80 Test #7: test_mkindex_tblastn_sa .......... Passed 0.28 sec Start 8: test_mkindex_tblastn_fm - 8/80 Test #8: test_mkindex_tblastn_fm .......... Passed 0.39 sec + 8/80 Test #8: test_mkindex_tblastn_fm .......... Passed 0.37 sec Start 9: test_mkindex_tblastx_sa - 9/80 Test #9: test_mkindex_tblastx_sa .......... Passed 0.36 sec + 9/80 Test #9: test_mkindex_tblastx_sa .......... Passed 0.30 sec Start 10: test_mkindex_tblastx_fm -10/80 Test #10: test_mkindex_tblastx_fm .......... Passed 0.38 sec +10/80 Test #10: test_mkindex_tblastx_fm .......... Passed 0.34 sec Start 11: test_search_blastn_sa_m0 -11/80 Test #11: test_search_blastn_sa_m0 ......... Passed 2.86 sec +11/80 Test #11: test_search_blastn_sa_m0 ......... Passed 3.61 sec Start 12: test_search_blastn_sa_m8 -12/80 Test #12: test_search_blastn_sa_m8 ......... Passed 2.21 sec +12/80 Test #12: test_search_blastn_sa_m8 ......... Passed 4.04 sec Start 13: test_search_blastn_sa_m9 -13/80 Test #13: test_search_blastn_sa_m9 ......... Passed 2.14 sec +13/80 Test #13: test_search_blastn_sa_m9 ......... Passed 3.15 sec Start 14: test_search_blastn_sa_sam -14/80 Test #14: test_search_blastn_sa_sam ........ Passed 2.35 sec +14/80 Test #14: test_search_blastn_sa_sam ........ Passed 2.36 sec Start 15: test_search_blastn_sa_bam -15/80 Test #15: test_search_blastn_sa_bam ........ Passed 2.25 sec +15/80 Test #15: test_search_blastn_sa_bam ........ Passed 2.17 sec Start 16: test_search_blastn_sa_m9.gz -16/80 Test #16: test_search_blastn_sa_m9.gz ...... Passed 2.22 sec +16/80 Test #16: test_search_blastn_sa_m9.gz ...... Passed 2.50 sec Start 17: test_search_blastn_sa_sam.bz2 -17/80 Test #17: test_search_blastn_sa_sam.bz2 .... Passed 3.21 sec +17/80 Test #17: test_search_blastn_sa_sam.bz2 .... Passed 4.04 sec Start 18: test_search_blastn_fm_m0 -18/80 Test #18: test_search_blastn_fm_m0 ......... Passed 2.77 sec +18/80 Test #18: test_search_blastn_fm_m0 ......... Passed 2.47 sec Start 19: test_search_blastn_fm_m8 -19/80 Test #19: test_search_blastn_fm_m8 ......... Passed 2.40 sec +19/80 Test #19: test_search_blastn_fm_m8 ......... Passed 2.04 sec Start 20: test_search_blastn_fm_m9 -20/80 Test #20: test_search_blastn_fm_m9 ......... Passed 2.29 sec +20/80 Test #20: test_search_blastn_fm_m9 ......... Passed 1.96 sec Start 21: test_search_blastn_fm_sam -21/80 Test #21: test_search_blastn_fm_sam ........ Passed 2.37 sec +21/80 Test #21: test_search_blastn_fm_sam ........ Passed 2.00 sec Start 22: test_search_blastn_fm_bam -22/80 Test #22: test_search_blastn_fm_bam ........ Passed 2.38 sec +22/80 Test #22: test_search_blastn_fm_bam ........ Passed 2.11 sec Start 23: test_search_blastn_fm_m9.gz -23/80 Test #23: test_search_blastn_fm_m9.gz ...... Passed 2.35 sec +23/80 Test #23: test_search_blastn_fm_m9.gz ...... Passed 3.77 sec Start 24: test_search_blastn_fm_sam.bz2 -24/80 Test #24: test_search_blastn_fm_sam.bz2 .... Passed 3.32 sec +24/80 Test #24: test_search_blastn_fm_sam.bz2 .... Passed 3.75 sec Start 25: test_search_blastp_sa_m0 -25/80 Test #25: test_search_blastp_sa_m0 ......... Passed 0.31 sec +25/80 Test #25: test_search_blastp_sa_m0 ......... Passed 0.30 sec Start 26: test_search_blastp_sa_m8 -26/80 Test #26: test_search_blastp_sa_m8 ......... Passed 0.28 sec +26/80 Test #26: test_search_blastp_sa_m8 ......... Passed 0.32 sec Start 27: test_search_blastp_sa_m9 -27/80 Test #27: test_search_blastp_sa_m9 ......... Passed 0.28 sec +27/80 Test #27: test_search_blastp_sa_m9 ......... Passed 0.25 sec Start 28: test_search_blastp_sa_sam -28/80 Test #28: test_search_blastp_sa_sam ........ Passed 0.29 sec +28/80 Test #28: test_search_blastp_sa_sam ........ Passed 0.31 sec Start 29: test_search_blastp_sa_bam -29/80 Test #29: test_search_blastp_sa_bam ........ Passed 0.29 sec +29/80 Test #29: test_search_blastp_sa_bam ........ Passed 0.25 sec Start 30: test_search_blastp_sa_m9.gz -30/80 Test #30: test_search_blastp_sa_m9.gz ...... Passed 0.31 sec +30/80 Test #30: test_search_blastp_sa_m9.gz ...... Passed 0.28 sec Start 31: test_search_blastp_sa_sam.bz2 -31/80 Test #31: test_search_blastp_sa_sam.bz2 .... Passed 0.34 sec +31/80 Test #31: test_search_blastp_sa_sam.bz2 .... Passed 0.32 sec Start 32: test_search_blastp_fm_m0 -32/80 Test #32: test_search_blastp_fm_m0 ......... Passed 0.35 sec +32/80 Test #32: test_search_blastp_fm_m0 ......... Passed 0.32 sec Start 33: test_search_blastp_fm_m8 33/80 Test #33: test_search_blastp_fm_m8 ......... Passed 0.32 sec Start 34: test_search_blastp_fm_m9 -34/80 Test #34: test_search_blastp_fm_m9 ......... Passed 0.34 sec +34/80 Test #34: test_search_blastp_fm_m9 ......... Passed 0.32 sec Start 35: test_search_blastp_fm_sam -35/80 Test #35: test_search_blastp_fm_sam ........ Passed 0.32 sec +35/80 Test #35: test_search_blastp_fm_sam ........ Passed 0.30 sec Start 36: test_search_blastp_fm_bam -36/80 Test #36: test_search_blastp_fm_bam ........ Passed 0.33 sec +36/80 Test #36: test_search_blastp_fm_bam ........ Passed 0.30 sec Start 37: test_search_blastp_fm_m9.gz -37/80 Test #37: test_search_blastp_fm_m9.gz ...... Passed 0.36 sec +37/80 Test #37: test_search_blastp_fm_m9.gz ...... Passed 0.32 sec Start 38: test_search_blastp_fm_sam.bz2 -38/80 Test #38: test_search_blastp_fm_sam.bz2 .... Passed 0.39 sec +38/80 Test #38: test_search_blastp_fm_sam.bz2 .... Passed 0.36 sec Start 39: test_search_blastx_sa_m0 -39/80 Test #39: test_search_blastx_sa_m0 ......... Passed 1.19 sec +39/80 Test #39: test_search_blastx_sa_m0 ......... Passed 0.89 sec Start 40: test_search_blastx_sa_m8 -40/80 Test #40: test_search_blastx_sa_m8 ......... Passed 0.91 sec +40/80 Test #40: test_search_blastx_sa_m8 ......... Passed 0.78 sec Start 41: test_search_blastx_sa_m9 -41/80 Test #41: test_search_blastx_sa_m9 ......... Passed 0.88 sec +41/80 Test #41: test_search_blastx_sa_m9 ......... Passed 0.80 sec Start 42: test_search_blastx_sa_sam -42/80 Test #42: test_search_blastx_sa_sam ........ Passed 0.99 sec +42/80 Test #42: test_search_blastx_sa_sam ........ Passed 0.84 sec Start 43: test_search_blastx_sa_bam -43/80 Test #43: test_search_blastx_sa_bam ........ Passed 0.94 sec +43/80 Test #43: test_search_blastx_sa_bam ........ Passed 0.79 sec Start 44: test_search_blastx_sa_m9.gz -44/80 Test #44: test_search_blastx_sa_m9.gz ...... Passed 1.08 sec +44/80 Test #44: test_search_blastx_sa_m9.gz ...... Passed 0.91 sec Start 45: test_search_blastx_sa_sam.bz2 -45/80 Test #45: test_search_blastx_sa_sam.bz2 .... Passed 1.44 sec +45/80 Test #45: test_search_blastx_sa_sam.bz2 .... Passed 1.32 sec Start 46: test_search_blastx_fm_m0 -46/80 Test #46: test_search_blastx_fm_m0 ......... Passed 1.22 sec +46/80 Test #46: test_search_blastx_fm_m0 ......... Passed 1.09 sec Start 47: test_search_blastx_fm_m8 -47/80 Test #47: test_search_blastx_fm_m8 ......... Passed 1.07 sec +47/80 Test #47: test_search_blastx_fm_m8 ......... Passed 0.97 sec Start 48: test_search_blastx_fm_m9 -48/80 Test #48: test_search_blastx_fm_m9 ......... Passed 1.09 sec +48/80 Test #48: test_search_blastx_fm_m9 ......... Passed 0.98 sec Start 49: test_search_blastx_fm_sam -49/80 Test #49: test_search_blastx_fm_sam ........ Passed 1.28 sec +49/80 Test #49: test_search_blastx_fm_sam ........ Passed 1.01 sec Start 50: test_search_blastx_fm_bam -50/80 Test #50: test_search_blastx_fm_bam ........ Passed 1.09 sec +50/80 Test #50: test_search_blastx_fm_bam ........ Passed 1.00 sec Start 51: test_search_blastx_fm_m9.gz -51/80 Test #51: test_search_blastx_fm_m9.gz ...... Passed 1.21 sec +51/80 Test #51: test_search_blastx_fm_m9.gz ...... Passed 1.31 sec Start 52: test_search_blastx_fm_sam.bz2 -52/80 Test #52: test_search_blastx_fm_sam.bz2 .... Passed 1.73 sec +52/80 Test #52: test_search_blastx_fm_sam.bz2 .... Passed 1.85 sec Start 53: test_search_tblastn_sa_m0 -53/80 Test #53: test_search_tblastn_sa_m0 ........ Passed 1.04 sec +53/80 Test #53: test_search_tblastn_sa_m0 ........ Passed 0.88 sec Start 54: test_search_tblastn_sa_m8 -54/80 Test #54: test_search_tblastn_sa_m8 ........ Passed 0.89 sec +54/80 Test #54: test_search_tblastn_sa_m8 ........ Passed 0.75 sec Start 55: test_search_tblastn_sa_m9 -55/80 Test #55: test_search_tblastn_sa_m9 ........ Passed 0.88 sec +55/80 Test #55: test_search_tblastn_sa_m9 ........ Passed 0.76 sec Start 56: test_search_tblastn_sa_sam -56/80 Test #56: test_search_tblastn_sa_sam ....... Passed 0.81 sec +56/80 Test #56: test_search_tblastn_sa_sam ....... Passed 0.75 sec Start 57: test_search_tblastn_sa_bam -57/80 Test #57: test_search_tblastn_sa_bam ....... Passed 0.84 sec +57/80 Test #57: test_search_tblastn_sa_bam ....... Passed 0.65 sec Start 58: test_search_tblastn_sa_m9.gz -58/80 Test #58: test_search_tblastn_sa_m9.gz ..... Passed 0.97 sec +58/80 Test #58: test_search_tblastn_sa_m9.gz ..... Passed 0.87 sec Start 59: test_search_tblastn_sa_sam.bz2 -59/80 Test #59: test_search_tblastn_sa_sam.bz2 ... Passed 1.23 sec +59/80 Test #59: test_search_tblastn_sa_sam.bz2 ... Passed 1.05 sec Start 60: test_search_tblastn_fm_m0 -60/80 Test #60: test_search_tblastn_fm_m0 ........ Passed 1.02 sec +60/80 Test #60: test_search_tblastn_fm_m0 ........ Passed 0.81 sec Start 61: test_search_tblastn_fm_m8 -61/80 Test #61: test_search_tblastn_fm_m8 ........ Passed 0.91 sec +61/80 Test #61: test_search_tblastn_fm_m8 ........ Passed 0.78 sec Start 62: test_search_tblastn_fm_m9 -62/80 Test #62: test_search_tblastn_fm_m9 ........ Passed 0.86 sec +62/80 Test #62: test_search_tblastn_fm_m9 ........ Passed 0.72 sec Start 63: test_search_tblastn_fm_sam -63/80 Test #63: test_search_tblastn_fm_sam ....... Passed 0.94 sec +63/80 Test #63: test_search_tblastn_fm_sam ....... Passed 0.76 sec Start 64: test_search_tblastn_fm_bam -64/80 Test #64: test_search_tblastn_fm_bam ....... Passed 0.84 sec +64/80 Test #64: test_search_tblastn_fm_bam ....... Passed 0.71 sec Start 65: test_search_tblastn_fm_m9.gz -65/80 Test #65: test_search_tblastn_fm_m9.gz ..... Passed 1.01 sec +65/80 Test #65: test_search_tblastn_fm_m9.gz ..... Passed 0.86 sec Start 66: test_search_tblastn_fm_sam.bz2 -66/80 Test #66: test_search_tblastn_fm_sam.bz2 ... Passed 1.36 sec +66/80 Test #66: test_search_tblastn_fm_sam.bz2 ... Passed 1.08 sec Start 67: test_search_tblastx_sa_m0 -67/80 Test #67: test_search_tblastx_sa_m0 ........ Passed 5.12 sec +67/80 Test #67: test_search_tblastx_sa_m0 ........ Passed 3.41 sec Start 68: test_search_tblastx_sa_m8 -68/80 Test #68: test_search_tblastx_sa_m8 ........ Passed 3.82 sec +68/80 Test #68: test_search_tblastx_sa_m8 ........ Passed 2.85 sec Start 69: test_search_tblastx_sa_m9 -69/80 Test #69: test_search_tblastx_sa_m9 ........ Passed 3.88 sec +69/80 Test #69: test_search_tblastx_sa_m9 ........ Passed 2.88 sec Start 70: test_search_tblastx_sa_sam -70/80 Test #70: test_search_tblastx_sa_sam ....... Passed 4.09 sec +70/80 Test #70: test_search_tblastx_sa_sam ....... Passed 3.03 sec Start 71: test_search_tblastx_sa_bam -71/80 Test #71: test_search_tblastx_sa_bam ....... Passed 3.60 sec +71/80 Test #71: test_search_tblastx_sa_bam ....... Passed 2.75 sec Start 72: test_search_tblastx_sa_m9.gz -72/80 Test #72: test_search_tblastx_sa_m9.gz ..... Passed 4.19 sec +72/80 Test #72: test_search_tblastx_sa_m9.gz ..... Passed 3.41 sec Start 73: test_search_tblastx_sa_sam.bz2 -73/80 Test #73: test_search_tblastx_sa_sam.bz2 ... Passed 7.65 sec +73/80 Test #73: test_search_tblastx_sa_sam.bz2 ... Passed 5.67 sec Start 74: test_search_tblastx_fm_m0 -74/80 Test #74: test_search_tblastx_fm_m0 ........ Passed 4.45 sec +74/80 Test #74: test_search_tblastx_fm_m0 ........ Passed 3.51 sec Start 75: test_search_tblastx_fm_m8 -75/80 Test #75: test_search_tblastx_fm_m8 ........ Passed 4.18 sec +75/80 Test #75: test_search_tblastx_fm_m8 ........ Passed 3.01 sec Start 76: test_search_tblastx_fm_m9 -76/80 Test #76: test_search_tblastx_fm_m9 ........ Passed 4.20 sec +76/80 Test #76: test_search_tblastx_fm_m9 ........ Passed 2.87 sec Start 77: test_search_tblastx_fm_sam -77/80 Test #77: test_search_tblastx_fm_sam ....... Passed 4.07 sec +77/80 Test #77: test_search_tblastx_fm_sam ....... Passed 3.12 sec Start 78: test_search_tblastx_fm_bam -78/80 Test #78: test_search_tblastx_fm_bam ....... Passed 3.73 sec +78/80 Test #78: test_search_tblastx_fm_bam ....... Passed 2.89 sec Start 79: test_search_tblastx_fm_m9.gz -79/80 Test #79: test_search_tblastx_fm_m9.gz ..... Passed 4.22 sec +79/80 Test #79: test_search_tblastx_fm_m9.gz ..... Passed 3.39 sec Start 80: test_search_tblastx_fm_sam.bz2 -80/80 Test #80: test_search_tblastx_fm_sam.bz2 ... Passed 7.83 sec +80/80 Test #80: test_search_tblastx_fm_sam.bz2 ... Passed 5.81 sec 100% tests passed, 0 tests failed out of 80 -Total Test time (real) = 137.00 sec +Total Test time (real) = 121.28 sec make[1]: Leaving directory '/build/lambda-align-1.0.3' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary @@ -1762,7 +1797,7 @@ dh_testroot -O--builddirectory=build dh_prep -O--builddirectory=build dh_auto_install -O--builddirectory=build - cd build && make -j16 install DESTDIR=/build/lambda-align-1.0.3/debian/lambda-align AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd build && make -j15 install DESTDIR=/build/lambda-align-1.0.3/debian/lambda-align AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/lambda-align-1.0.3/build' /usr/bin/cmake -S/build/lambda-align-1.0.3 -B/build/lambda-align-1.0.3/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/lambda-align-1.0.3/build/CMakeFiles /build/lambda-align-1.0.3/build//CMakeFiles/progress.marks @@ -1777,10 +1812,10 @@ make[3]: Leaving directory '/build/lambda-align-1.0.3/build' make[3]: Leaving directory '/build/lambda-align-1.0.3/build' make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/build +make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/build make[3]: Entering directory '/build/lambda-align-1.0.3/build' make[3]: Nothing to be done for 'src/CMakeFiles/lambda_indexer.dir/build'. make[3]: Leaving directory '/build/lambda-align-1.0.3/build' -make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/build make[3]: Entering directory '/build/lambda-align-1.0.3/build' make[3]: Nothing to be done for 'src/CMakeFiles/lambda.dir/build'. make[3]: Leaving directory '/build/lambda-align-1.0.3/build' @@ -1852,12 +1887,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1742152/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1742152/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/374625 and its subdirectories -I: Current time: Mon Jan 30 07:26:12 -12 2023 -I: pbuilder-time-stamp: 1675106772 +I: removing directory /srv/workspace/pbuilder/1742152 and its subdirectories +I: Current time: Wed Dec 29 03:09:34 +14 2021 +I: pbuilder-time-stamp: 1640696974