Diff of the two buildlogs: -- --- b1/build.log 2024-01-08 20:30:23.795339354 +0000 +++ b2/build.log 2024-01-08 21:21:03.845237614 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Feb 9 14:40:46 -12 2025 -I: pbuilder-time-stamp: 1739155246 +I: Current time: Tue Jan 9 10:30:33 +14 2024 +I: pbuilder-time-stamp: 1704745833 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -17,7 +17,7 @@ I: copying [./kissplice_2.5.3-3.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.m7kAw4Lw/trustedkeys.kbx': General error +gpgv: keyblock resource '/tmp/dpkg-verify-sig.1IAEroO1/trustedkeys.kbx': General error gpgv: Signature made Mon Oct 26 05:01:55 2020 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" @@ -33,49 +33,80 @@ dpkg-source: info: applying gcc10.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/491259/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2231188/tmp/hooks/D01_modify_environment starting +debug: Running on ionos1-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jan 8 20:31 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2231188/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2231188/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=16 ' - DISTRIBUTION='bullseye' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=15 ' + DIRSTACK=() + DISTRIBUTION=bullseye + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='8307b97aa36f49c2873896717104b058' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='491259' - PS1='# ' - PS2='> ' + INVOCATION_ID=0a6440142fad426d8551b4689346e44e + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2231188 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.xhPWyXUl/pbuilderrc_nNQN --distribution bullseye --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.xhPWyXUl/b1 --logfile b1/build.log kissplice_2.5.3-3.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://85.184.249.68:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.xhPWyXUl/pbuilderrc_rSZ0 --distribution bullseye --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.xhPWyXUl/b2 --logfile b2/build.log kissplice_2.5.3-3.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://78.137.99.97:3128 I: uname -a - Linux ionos15-amd64 6.5.0-0.deb12.4-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.5.10-1~bpo12+1 (2023-11-23) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-17-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.69-1 (2023-12-30) x86_64 GNU/Linux I: ls -l /bin total 5476 -rwxr-xr-x 1 root root 1234376 Mar 27 2022 bash @@ -135,7 +166,7 @@ -rwxr-xr-x 1 root root 52032 Sep 24 2020 rmdir -rwxr-xr-x 1 root root 27472 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Feb 8 15:47 sh -> dash + lrwxrwxrwx 1 root root 9 Jan 8 20:31 sh -> /bin/bash -rwxr-xr-x 1 root root 43808 Sep 24 2020 sleep -rwxr-xr-x 1 root root 84928 Sep 24 2020 stty -rwsr-xr-x 1 root root 71912 Jan 20 2022 su @@ -161,7 +192,7 @@ -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew -I: user script /srv/workspace/pbuilder/491259/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/2231188/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -282,7 +313,7 @@ Get: 73 http://deb.debian.org/debian bullseye/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2+deb11u2 [191 kB] Get: 74 http://deb.debian.org/debian bullseye/main amd64 python3.9-dev amd64 3.9.2-1 [515 kB] Get: 75 http://deb.debian.org/debian bullseye/main amd64 python3-dev amd64 3.9.2-3 [24.8 kB] -Fetched 41.6 MB in 1s (79.5 MB/s) +Fetched 41.6 MB in 4s (11.1 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17743 files and directories currently installed.) @@ -534,8 +565,8 @@ Setting up tzdata (2021a-1+deb11u10) ... Current default time zone: 'Etc/UTC' -Local time is now: Mon Feb 10 02:41:18 UTC 2025. -Universal Time is now: Mon Feb 10 02:41:18 UTC 2025. +Local time is now: Mon Jan 8 20:35:53 UTC 2024. +Universal Time is now: Mon Jan 8 20:35:53 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20180224.1+nmu1) ... @@ -606,7 +637,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/kissplice-2.5.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../kissplice_2.5.3-3_source.changes +I: user script /srv/workspace/pbuilder/2231188/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for bullseye +I: user script /srv/workspace/pbuilder/2231188/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/kissplice-2.5.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../kissplice_2.5.3-3_source.changes dpkg-buildpackage: info: source package kissplice dpkg-buildpackage: info: source version 2.5.3-3 dpkg-buildpackage: info: source distribution unstable @@ -995,663 +1030,661 @@ -- Build files have been written to: /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/kissplice-2.5.3' dh_auto_build - cd obj-x86_64-linux-gnu && make -j16 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-x86_64-linux-gnu && make -j15 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/kissplice-2.5.3 -B/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' make -f bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5detect.dir/build.make bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5detect.dir/depend +make -f bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5make_libsettings.dir/build.make bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5make_libsettings.dir/depend make[3]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kissplice-2.5.3 /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5detect.dir/DependInfo.cmake --color= -make -f bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5make_libsettings.dir/build.make bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5make_libsettings.dir/depend +make -f bcalm/ext/gatb-core/thirdparty/CMakeFiles/hdf5_postbuild.dir/build.make bcalm/ext/gatb-core/thirdparty/CMakeFiles/hdf5_postbuild.dir/depend make[3]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kissplice-2.5.3 /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5make_libsettings.dir/DependInfo.cmake --color= -make -f bcalm/ext/gatb-core/thirdparty/CMakeFiles/hdf5_postbuild.dir/build.make bcalm/ext/gatb-core/thirdparty/CMakeFiles/hdf5_postbuild.dir/depend +make -f bcalm/ext/gatb-core/thirdparty/CMakeFiles/thirdparty_copy.dir/build.make bcalm/ext/gatb-core/thirdparty/CMakeFiles/thirdparty_copy.dir/depend +make -f thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/build.make thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/depend make[3]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kissplice-2.5.3 /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/CMakeFiles/hdf5_postbuild.dir/DependInfo.cmake --color= -make -f bcalm/ext/gatb-core/thirdparty/CMakeFiles/thirdparty_copy.dir/build.make bcalm/ext/gatb-core/thirdparty/CMakeFiles/thirdparty_copy.dir/depend +make -f thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/build.make thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/depend make[3]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kissplice-2.5.3 /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/CMakeFiles/thirdparty_copy.dir/DependInfo.cmake --color= -make -f thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/build.make thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/depend -make -f thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/build.make thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/depend make[3]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kissplice-2.5.3 /build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/src /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/DependInfo.cmake --color= make -f modules/CMakeFiles/ks_clean_duplicates.dir/build.make modules/CMakeFiles/ks_clean_duplicates.dir/depend +make -f modules/CMakeFiles/ks_bubble_enumeration.dir/build.make modules/CMakeFiles/ks_bubble_enumeration.dir/depend make[3]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kissplice-2.5.3 /build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/src /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/DependInfo.cmake --color= +make -f modules/CMakeFiles/ks_run_modules.dir/build.make modules/CMakeFiles/ks_run_modules.dir/depend make[3]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kissplice-2.5.3 /build/reproducible-path/kissplice-2.5.3/modules /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules/CMakeFiles/ks_clean_duplicates.dir/DependInfo.cmake --color= -make -f modules/CMakeFiles/ks_bubble_enumeration.dir/build.make modules/CMakeFiles/ks_bubble_enumeration.dir/depend +make[3]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kissplice-2.5.3 /build/reproducible-path/kissplice-2.5.3/modules /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules/CMakeFiles/ks_bubble_enumeration.dir/DependInfo.cmake --color= +make -f modules/CMakeFiles/ks_error_removal.dir/build.make modules/CMakeFiles/ks_error_removal.dir/depend +Dependee "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/depend.internal". +Dependee "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/depend.internal". +Scanning dependencies of target ks_kissreadsSplice +make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' Dependee "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5detect.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5detect.dir/depend.internal". +make -f thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/build.make thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/build Dependee "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5detect.dir/depend.internal". -Dependee "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5make_libsettings.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5make_libsettings.dir/depend.internal". -Dependee "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5make_libsettings.dir/depend.internal". +make -f modules/CMakeFiles/ks_print_bcc.dir/build.make modules/CMakeFiles/ks_print_bcc.dir/depend +make[3]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kissplice-2.5.3 /build/reproducible-path/kissplice-2.5.3/modules /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules/CMakeFiles/ks_run_modules.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kissplice-2.5.3 /build/reproducible-path/kissplice-2.5.3/modules /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules/CMakeFiles/ks_error_removal.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kissplice-2.5.3 /build/reproducible-path/kissplice-2.5.3/modules /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules/CMakeFiles/ks_print_bcc.dir/DependInfo.cmake --color= Scanning dependencies of target H5detect -Dependee "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/CMakeFiles/hdf5_postbuild.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/CMakeFiles/hdf5_postbuild.dir/depend.internal". -Dependee "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/CMakeFiles/hdf5_postbuild.dir/depend.internal". -Scanning dependencies of target hdf5_postbuild -make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kissplice-2.5.3 /build/reproducible-path/kissplice-2.5.3/modules /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules/CMakeFiles/ks_bubble_enumeration.dir/DependInfo.cmake --color= +make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' make -f bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5detect.dir/build.make bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5detect.dir/build Dependee "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/CMakeFiles/thirdparty_copy.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/CMakeFiles/thirdparty_copy.dir/depend.internal". Dependee "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/CMakeFiles/thirdparty_copy.dir/depend.internal". Scanning dependencies of target thirdparty_copy -make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' -Scanning dependencies of target H5make_libsettings +[ 0%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/commons.c.o make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' -make -f bcalm/ext/gatb-core/thirdparty/CMakeFiles/hdf5_postbuild.dir/build.make bcalm/ext/gatb-core/thirdparty/CMakeFiles/hdf5_postbuild.dir/build +make -f bcalm/ext/gatb-core/thirdparty/CMakeFiles/thirdparty_copy.dir/build.make bcalm/ext/gatb-core/thirdparty/CMakeFiles/thirdparty_copy.dir/build +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -o CMakeFiles/ks_kissreadsSplice.dir/commons.c.o -c /build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/src/commons.c make[3]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E make_directory /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 -make -f bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5make_libsettings.dir/build.make bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5make_libsettings.dir/build +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E make_directory /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/json +Dependee "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules/CMakeFiles/ks_bubble_enumeration.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules/CMakeFiles/ks_bubble_enumeration.dir/depend.internal". +Dependee "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules/CMakeFiles/ks_bubble_enumeration.dir/depend.internal". +Dependee "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5make_libsettings.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5make_libsettings.dir/depend.internal". +Dependee "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5make_libsettings.dir/depend.internal". +Scanning dependencies of target ks_bubble_enumeration +make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' +make -f modules/CMakeFiles/ks_bubble_enumeration.dir/build.make modules/CMakeFiles/ks_bubble_enumeration.dir/build Dependee "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/depend.internal". Dependee "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/depend.internal". -make[3]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' -Scanning dependencies of target ks_kissreadsSNPS -make -f bcalm/ext/gatb-core/thirdparty/CMakeFiles/thirdparty_copy.dir/build.make bcalm/ext/gatb-core/thirdparty/CMakeFiles/thirdparty_copy.dir/build -Dependee "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/depend.internal". -Dependee "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/depend.internal". +Dependee "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/CMakeFiles/hdf5_postbuild.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/CMakeFiles/hdf5_postbuild.dir/depend.internal". +Dependee "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/CMakeFiles/hdf5_postbuild.dir/depend.internal". +Scanning dependencies of target hdf5_postbuild +Scanning dependencies of target H5make_libsettings Dependee "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules/CMakeFiles/ks_clean_duplicates.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules/CMakeFiles/ks_clean_duplicates.dir/depend.internal". Dependee "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules/CMakeFiles/ks_clean_duplicates.dir/depend.internal". -make[3]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E make_directory /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/json -Scanning dependencies of target ks_kissreadsSplice make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' -make -f thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/build.make thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/build -Scanning dependencies of target ks_clean_duplicates -Dependee "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules/CMakeFiles/ks_bubble_enumeration.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules/CMakeFiles/ks_bubble_enumeration.dir/depend.internal". -Dependee "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules/CMakeFiles/ks_bubble_enumeration.dir/depend.internal". +make -f bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5make_libsettings.dir/build.make bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5make_libsettings.dir/build make[3]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' -make -f modules/CMakeFiles/ks_run_modules.dir/build.make modules/CMakeFiles/ks_run_modules.dir/depend -make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' -Scanning dependencies of target ks_bubble_enumeration make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' +Dependee "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules/CMakeFiles/ks_print_bcc.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules/CMakeFiles/ks_print_bcc.dir/depend.internal". +Dependee "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules/CMakeFiles/ks_print_bcc.dir/depend.internal". +make -f bcalm/ext/gatb-core/thirdparty/CMakeFiles/hdf5_postbuild.dir/build.make bcalm/ext/gatb-core/thirdparty/CMakeFiles/hdf5_postbuild.dir/build +Scanning dependencies of target ks_print_bcc +Scanning dependencies of target ks_kissreadsSNPS make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' -make -f thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/build.make thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/build +make -f modules/CMakeFiles/ks_print_bcc.dir/build.make modules/CMakeFiles/ks_print_bcc.dir/build +Dependee "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules/CMakeFiles/ks_error_removal.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules/CMakeFiles/ks_error_removal.dir/depend.internal". +Dependee "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules/CMakeFiles/ks_error_removal.dir/depend.internal". make[3]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kissplice-2.5.3 /build/reproducible-path/kissplice-2.5.3/modules /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules/CMakeFiles/ks_run_modules.dir/DependInfo.cmake --color= -[ 0%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5detect.dir/H5detect.c.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIE -w -o CMakeFiles/H5detect.dir/H5detect.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5detect.c make[3]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5ACpkg.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 +Scanning dependencies of target ks_error_removal +Scanning dependencies of target ks_clean_duplicates +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E make_directory /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 +make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' +[ 0%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/extension_algorithm.c.o +make -f thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/build.make thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/build +make[3]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -o CMakeFiles/ks_kissreadsSplice.dir/extension_algorithm.c.o -c /build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/src/extension_algorithm.c make -f modules/CMakeFiles/ks_clean_duplicates.dir/build.make modules/CMakeFiles/ks_clean_duplicates.dir/build -[ 0%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5make_libsettings.dir/H5make_libsettings.c.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIE -w -o CMakeFiles/H5make_libsettings.dir/H5make_libsettings.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5make_libsettings.c +Dependee "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules/CMakeFiles/ks_run_modules.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules/CMakeFiles/ks_run_modules.dir/depend.internal". +Dependee "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules/CMakeFiles/ks_run_modules.dir/depend.internal". +[ 0%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/libchash.c.o make[3]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' -make -f modules/CMakeFiles/ks_bubble_enumeration.dir/build.make modules/CMakeFiles/ks_bubble_enumeration.dir/build +make -f modules/CMakeFiles/ks_error_removal.dir/build.make modules/CMakeFiles/ks_error_removal.dir/build +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E make_directory /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/BooPHF +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -o CMakeFiles/ks_kissreadsSplice.dir/libchash.c.o -c /build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/src/libchash.c +[ 0%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/interface_libchash.c.o make[3]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' -make -f modules/CMakeFiles/ks_error_removal.dir/build.make modules/CMakeFiles/ks_error_removal.dir/depend -[ 0%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/extension_algorithm.c.o -[ 0%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/commons.c.o +[ 0%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5detect.dir/H5detect.c.o make[3]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kissplice-2.5.3 /build/reproducible-path/kissplice-2.5.3/modules /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules/CMakeFiles/ks_error_removal.dir/DependInfo.cmake --color= -[ 0%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/interface_libchash.c.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -o CMakeFiles/ks_kissreadsSNPS.dir/commons.c.o -c /build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/src/commons.c -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E make_directory /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/BooPHF -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5ACprivate.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 -Dependee "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules/CMakeFiles/ks_run_modules.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules/CMakeFiles/ks_run_modules.dir/depend.internal". -Dependee "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules/CMakeFiles/ks_run_modules.dir/depend.internal". -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -o CMakeFiles/ks_kissreadsSNPS.dir/extension_algorithm.c.o -c /build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/src/extension_algorithm.c -[ 0%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/commons.c.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -o CMakeFiles/ks_kissreadsSplice.dir/commons.c.o -c /build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/src/commons.c -[ 0%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/extension_algorithm.c.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -o CMakeFiles/ks_kissreadsSplice.dir/interface_libchash.c.o -c /build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/src/interface_libchash.c +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIE -w -o CMakeFiles/H5detect.dir/H5detect.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5detect.c +[ 1%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/outputs.c.o Scanning dependencies of target ks_run_modules -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -o CMakeFiles/ks_kissreadsSNPS.dir/interface_libchash.c.o -c /build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/src/interface_libchash.c -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -o CMakeFiles/ks_kissreadsSplice.dir/extension_algorithm.c.o -c /build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/src/extension_algorithm.c -[ 1%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/libchash.c.o -[ 2%] Building CXX object modules/CMakeFiles/ks_clean_duplicates.dir/CleanDuplicates.cpp.o +[ 1%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/commons.c.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -o CMakeFiles/ks_kissreadsSNPS.dir/commons.c.o -c /build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/src/commons.c +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -o CMakeFiles/ks_kissreadsSplice.dir/outputs.c.o -c /build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/src/outputs.c make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' make -f modules/CMakeFiles/ks_run_modules.dir/build.make modules/CMakeFiles/ks_run_modules.dir/build -[ 2%] Building CXX object modules/CMakeFiles/ks_clean_duplicates.dir/CycleCompression.cpp.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/BooPHF/BooPHF.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/BooPHF/ +make[3]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' +[ 2%] Building CXX object modules/CMakeFiles/ks_print_bcc.dir/PrintBcc.cpp.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_print_bcc.dir/PrintBcc.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/PrintBcc.cpp +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/json/json.hpp /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/json/ +make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' [ 2%] Building CXX object modules/CMakeFiles/ks_bubble_enumeration.dir/BubbleEnumeration.cpp.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_clean_duplicates.dir/CycleCompression.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/CycleCompression.cpp -[ 2%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/outputs.c.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -o CMakeFiles/ks_kissreadsSNPS.dir/outputs.c.o -c /build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/src/outputs.c +[ 3%] Building CXX object modules/CMakeFiles/ks_clean_duplicates.dir/CleanDuplicates.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_bubble_enumeration.dir/BubbleEnumeration.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/BubbleEnumeration.cpp cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_clean_duplicates.dir/CleanDuplicates.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/CleanDuplicates.cpp -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -o CMakeFiles/ks_kissreadsSNPS.dir/libchash.c.o -c /build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/src/libchash.c -make[3]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' -Dependee "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules/CMakeFiles/ks_error_removal.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules/CMakeFiles/ks_error_removal.dir/depend.internal". -Dependee "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules/CMakeFiles/ks_error_removal.dir/depend.internal". -Scanning dependencies of target ks_error_removal -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/BooPHF/BooPHF.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/BooPHF/ -make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' -make -f modules/CMakeFiles/ks_error_removal.dir/build.make modules/CMakeFiles/ks_error_removal.dir/build -make[3]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5ACpublic.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 -[ 2%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/run.cpp.o +[ 3%] Built target thirdparty_copy +[ 3%] Building CXX object modules/CMakeFiles/ks_error_removal.dir/ErrorRemoval.cpp.o +[ 3%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5make_libsettings.dir/H5make_libsettings.c.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5ACpkg.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_error_removal.dir/ErrorRemoval.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/ErrorRemoval.cpp +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIE -w -o CMakeFiles/H5make_libsettings.dir/H5make_libsettings.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5make_libsettings.c +[ 3%] Building CXX object modules/CMakeFiles/ks_clean_duplicates.dir/CycleCompression.cpp.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_clean_duplicates.dir/CycleCompression.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/CycleCompression.cpp +[ 3%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/run.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_run_modules.dir/run.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/run.cpp -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/json/json.hpp /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/json/ -[ 2%] Building CXX object modules/CMakeFiles/ks_error_removal.dir/ErrorRemoval.cpp.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5ACprivate.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5ACpublic.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Apkg.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_error_removal.dir/ErrorRemoval.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/ErrorRemoval.cpp -make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Aprivate.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 -[ 2%] Built target thirdparty_copy -make -f modules/CMakeFiles/ks_print_bcc.dir/build.make modules/CMakeFiles/ks_print_bcc.dir/depend -make[3]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kissplice-2.5.3 /build/reproducible-path/kissplice-2.5.3/modules /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules/CMakeFiles/ks_print_bcc.dir/DependInfo.cmake --color= cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Apublic.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 -Dependee "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules/CMakeFiles/ks_print_bcc.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules/CMakeFiles/ks_print_bcc.dir/depend.internal". -Dependee "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules/CMakeFiles/ks_print_bcc.dir/depend.internal". -Scanning dependencies of target ks_print_bcc -make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' -make -f modules/CMakeFiles/ks_print_bcc.dir/build.make modules/CMakeFiles/ks_print_bcc.dir/build -make[3]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5B2pkg.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 -[ 3%] Building CXX object modules/CMakeFiles/ks_print_bcc.dir/PrintBcc.cpp.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_print_bcc.dir/PrintBcc.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/PrintBcc.cpp cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5B2private.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5B2public.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 -[ 3%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/coherent_algorithm.c.o -[ 3%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/couple.c.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -o CMakeFiles/ks_kissreadsSNPS.dir/coherent_algorithm.c.o -c /build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/src/coherent_algorithm.c -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -o CMakeFiles/ks_kissreadsSNPS.dir/couple.c.o -c /build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/src/couple.c cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Bpkg.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Bprivate.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Bpublic.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 [ 3%] Linking C executable ../../../../../../lib/kissplice/H5make_libsettings cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/H5make_libsettings.dir/link.txt --verbose=1 -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5CSprivate.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 -[ 3%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/kissReads.c.o -[ 4%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/fragment_index.c.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -o CMakeFiles/ks_kissreadsSNPS.dir/fragment_index.c.o -c /build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/src/fragment_index.c -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -o CMakeFiles/ks_kissreadsSNPS.dir/kissReads.c.o -c /build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/src/kissReads.c +[ 3%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/coherent_algorithm.c.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -o CMakeFiles/ks_kissreadsSplice.dir/coherent_algorithm.c.o -c /build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/src/coherent_algorithm.c +[ 3%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/couple.c.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -o CMakeFiles/ks_kissreadsSplice.dir/couple.c.o -c /build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/src/couple.c +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Bprivate.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/H5make_libsettings.dir/H5make_libsettings.c.o -o ../../../../../../lib/kissplice/H5make_libsettings +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Bpublic.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 +make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' +[ 3%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/fragment_index.c.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -o CMakeFiles/ks_kissreadsSplice.dir/fragment_index.c.o -c /build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/src/fragment_index.c +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5CSprivate.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 +[ 3%] Built target H5make_libsettings +[ 3%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/CycleCompression.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Cpkg.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_run_modules.dir/CycleCompression.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/CycleCompression.cpp +[ 4%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/kissReads.c.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -o CMakeFiles/ks_kissreadsSplice.dir/kissReads.c.o -c /build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/src/kissReads.c cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Cprivate.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 +[ 4%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/list.c.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -o CMakeFiles/ks_kissreadsSplice.dir/list.c.o -c /build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/src/list.c +[ 4%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/tree.c.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -o CMakeFiles/ks_kissreadsSplice.dir/tree.c.o -c /build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/src/tree.c cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Cpublic.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 -make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Dpkg.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 -[ 4%] Built target H5make_libsettings +[ 4%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/extension_algorithm.c.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -o CMakeFiles/ks_kissreadsSNPS.dir/extension_algorithm.c.o -c /build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/src/extension_algorithm.c +[ 4%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/interface_libchash.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Dprivate.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 -[ 4%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/list.c.o -[ 4%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/interface_libchash.c.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -o CMakeFiles/ks_kissreadsSNPS.dir/list.c.o -c /build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/src/list.c -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -o CMakeFiles/ks_kissreadsSplice.dir/interface_libchash.c.o -c /build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/src/interface_libchash.c -[ 4%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/tree.c.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -o CMakeFiles/ks_kissreadsSNPS.dir/tree.c.o -c /build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/src/tree.c +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -o CMakeFiles/ks_kissreadsSNPS.dir/interface_libchash.c.o -c /build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/src/interface_libchash.c cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Dpublic.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Edefin.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 -[ 4%] Building CXX object modules/CMakeFiles/ks_error_removal.dir/CEdge.cpp.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_error_removal.dir/CEdge.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/CEdge.cpp +[ 5%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/libchash.c.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -o CMakeFiles/ks_kissreadsSNPS.dir/libchash.c.o -c /build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/src/libchash.c cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Einit.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 +[ 5%] Building CXX object modules/CMakeFiles/ks_error_removal.dir/CEdge.cpp.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_error_removal.dir/CEdge.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/CEdge.cpp cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Epkg.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 -[ 4%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/libchash.c.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -o CMakeFiles/ks_kissreadsSplice.dir/libchash.c.o -c /build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/src/libchash.c +[ 5%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/outputs.c.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -o CMakeFiles/ks_kissreadsSNPS.dir/outputs.c.o -c /build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/src/outputs.c cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Eprivate.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 -[ 4%] Building CXX object modules/CMakeFiles/ks_error_removal.dir/LabelledCEdge.cpp.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_error_removal.dir/LabelledCEdge.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/LabelledCEdge.cpp +[ 5%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/coherent_algorithm.c.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -o CMakeFiles/ks_kissreadsSNPS.dir/coherent_algorithm.c.o -c /build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/src/coherent_algorithm.c cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Epubgen.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 +[ 5%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/couple.c.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -o CMakeFiles/ks_kissreadsSNPS.dir/couple.c.o -c /build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/src/couple.c cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Epublic.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 -[ 5%] Building CXX object modules/CMakeFiles/ks_error_removal.dir/Utils.cpp.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_error_removal.dir/Utils.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/Utils.cpp cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Eterm.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 +[ 6%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/fragment_index.c.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -o CMakeFiles/ks_kissreadsSNPS.dir/fragment_index.c.o -c /build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/src/fragment_index.c cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDcore.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 -[ 5%] Building CXX object modules/CMakeFiles/ks_bubble_enumeration.dir/CycleCompression.cpp.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_bubble_enumeration.dir/CycleCompression.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/CycleCompression.cpp +[ 6%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/kissReads.c.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -o CMakeFiles/ks_kissreadsSNPS.dir/kissReads.c.o -c /build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/src/kissReads.c cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDdirect.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 -[ 5%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/coherent_algorithm.c.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -o CMakeFiles/ks_kissreadsSplice.dir/coherent_algorithm.c.o -c /build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/src/coherent_algorithm.c -[ 6%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/outputs.c.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -o CMakeFiles/ks_kissreadsSplice.dir/outputs.c.o -c /build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/src/outputs.c +[ 6%] Linking C executable ../../../lib/kissplice/ks_kissreadsSplice +[ 6%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/list.c.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ks_kissreadsSplice.dir/link.txt --verbose=1 cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDfamily.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -o CMakeFiles/ks_kissreadsSNPS.dir/list.c.o -c /build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/src/list.c cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDlog.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 -[ 7%] Linking C executable ../../../lib/kissplice/ks_kissreadsSNPS -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ks_kissreadsSNPS.dir/link.txt --verbose=1 +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ks_kissreadsSplice.dir/commons.c.o CMakeFiles/ks_kissreadsSplice.dir/extension_algorithm.c.o CMakeFiles/ks_kissreadsSplice.dir/interface_libchash.c.o CMakeFiles/ks_kissreadsSplice.dir/libchash.c.o CMakeFiles/ks_kissreadsSplice.dir/outputs.c.o CMakeFiles/ks_kissreadsSplice.dir/coherent_algorithm.c.o CMakeFiles/ks_kissreadsSplice.dir/couple.c.o CMakeFiles/ks_kissreadsSplice.dir/fragment_index.c.o CMakeFiles/ks_kissreadsSplice.dir/kissReads.c.o CMakeFiles/ks_kissreadsSplice.dir/list.c.o CMakeFiles/ks_kissreadsSplice.dir/tree.c.o -o ../../../lib/kissplice/ks_kissreadsSplice -lm -lz cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDmpi.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 +[ 6%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/tree.c.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -o CMakeFiles/ks_kissreadsSNPS.dir/tree.c.o -c /build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/src/tree.c +[ 7%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/NGraph.cpp.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_run_modules.dir/NGraph.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/NGraph.cpp cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDmpio.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ks_kissreadsSNPS.dir/commons.c.o CMakeFiles/ks_kissreadsSNPS.dir/extension_algorithm.c.o CMakeFiles/ks_kissreadsSNPS.dir/interface_libchash.c.o CMakeFiles/ks_kissreadsSNPS.dir/libchash.c.o CMakeFiles/ks_kissreadsSNPS.dir/outputs.c.o CMakeFiles/ks_kissreadsSNPS.dir/coherent_algorithm.c.o CMakeFiles/ks_kissreadsSNPS.dir/couple.c.o CMakeFiles/ks_kissreadsSNPS.dir/fragment_index.c.o CMakeFiles/ks_kissreadsSNPS.dir/kissReads.c.o CMakeFiles/ks_kissreadsSNPS.dir/list.c.o CMakeFiles/ks_kissreadsSNPS.dir/tree.c.o -o ../../../lib/kissplice/ks_kissreadsSNPS -lm -lz +In file included from /build/reproducible-path/kissplice-2.5.3/modules/PrintBcc.cpp:51: +/build/reproducible-path/kissplice-2.5.3/modules/BubbleEnumeration.h:124:1: warning: 'typedef' was ignored in this declaration + 124 | typedef struct Path { + | ^~~~~~~ cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDmulti.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDpkg.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' -[ 7%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/couple.c.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -o CMakeFiles/ks_kissreadsSplice.dir/couple.c.o -c /build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/src/couple.c -[ 7%] Built target ks_kissreadsSNPS +[ 7%] Built target ks_kissreadsSplice +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDpkg.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 +[ 7%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/CGraph.cpp.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_run_modules.dir/CGraph.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/CGraph.cpp +[ 7%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/CEdge.cpp.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_run_modules.dir/CEdge.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/CEdge.cpp cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDprivate.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 -[ 8%] Building CXX object modules/CMakeFiles/ks_bubble_enumeration.dir/NGraph.cpp.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_bubble_enumeration.dir/NGraph.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/NGraph.cpp -[ 8%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/fragment_index.c.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -o CMakeFiles/ks_kissreadsSplice.dir/fragment_index.c.o -c /build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/src/fragment_index.c +[ 7%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/LabelledCEdge.cpp.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_run_modules.dir/LabelledCEdge.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/LabelledCEdge.cpp cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDpublic.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 +[ 7%] Building CXX object modules/CMakeFiles/ks_error_removal.dir/LabelledCEdge.cpp.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_error_removal.dir/LabelledCEdge.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/LabelledCEdge.cpp +[ 8%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/NNode.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDsec2.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 -[ 9%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/kissReads.c.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -o CMakeFiles/ks_kissreadsSplice.dir/kissReads.c.o -c /build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/src/kissReads.c +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_run_modules.dir/NNode.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/NNode.cpp +In file included from /build/reproducible-path/kissplice-2.5.3/modules/BubbleEnumeration.cpp:61: +/build/reproducible-path/kissplice-2.5.3/modules/BubbleEnumeration.h:124:1: warning: 'typedef' was ignored in this declaration + 124 | typedef struct Path { + | ^~~~~~~ cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDstdio.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDwindows.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 +[ 8%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/NEdge.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FLprivate.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_run_modules.dir/NEdge.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/NEdge.cpp cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FOprivate.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 -[ 9%] Building CXX object modules/CMakeFiles/ks_bubble_enumeration.dir/CGraph.cpp.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_bubble_enumeration.dir/CGraph.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/CGraph.cpp -[ 9%] Building CXX object modules/CMakeFiles/ks_clean_duplicates.dir/NGraph.cpp.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_clean_duplicates.dir/NGraph.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/NGraph.cpp cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FSpkg.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FSprivate.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 -[ 9%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/list.c.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -o CMakeFiles/ks_kissreadsSplice.dir/list.c.o -c /build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/src/list.c cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FSpublic.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 -In file included from /build/reproducible-path/kissplice-2.5.3/modules/PrintBcc.cpp:51: -/build/reproducible-path/kissplice-2.5.3/modules/BubbleEnumeration.h:124:1: warning: 'typedef' was ignored in this declaration - 124 | typedef struct Path { - | ^~~~~~~ cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Fpkg.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 -In file included from /build/reproducible-path/kissplice-2.5.3/modules/BubbleEnumeration.cpp:61: -/build/reproducible-path/kissplice-2.5.3/modules/BubbleEnumeration.h:124:1: warning: 'typedef' was ignored in this declaration - 124 | typedef struct Path { - | ^~~~~~~ cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Fprivate.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Fpublic.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Gpkg.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 +[ 8%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/SplitBcc.cpp.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_run_modules.dir/SplitBcc.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/SplitBcc.cpp +[ 8%] Building CXX object modules/CMakeFiles/ks_print_bcc.dir/Utils.cpp.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_print_bcc.dir/Utils.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/Utils.cpp cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Gprivate.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Gpublic.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 +[ 8%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/Utils.cpp.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_run_modules.dir/Utils.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/Utils.cpp +[ 9%] Building CXX object modules/CMakeFiles/ks_error_removal.dir/Utils.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HFpkg.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_error_removal.dir/Utils.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/Utils.cpp +[ 9%] Building CXX object modules/CMakeFiles/ks_clean_duplicates.dir/NGraph.cpp.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_clean_duplicates.dir/NGraph.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/NGraph.cpp cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HFprivate.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 -[ 9%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/tree.c.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -o CMakeFiles/ks_kissreadsSplice.dir/tree.c.o -c /build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/src/tree.c cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HFpublic.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 -[ 9%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/CycleCompression.cpp.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_run_modules.dir/CycleCompression.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/CycleCompression.cpp cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HGpkg.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 -[ 9%] Building CXX object modules/CMakeFiles/ks_bubble_enumeration.dir/CEdge.cpp.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_bubble_enumeration.dir/CEdge.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/CEdge.cpp cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HGprivate.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 +[ 9%] Building CXX object modules/CMakeFiles/ks_bubble_enumeration.dir/CycleCompression.cpp.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_bubble_enumeration.dir/CycleCompression.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/CycleCompression.cpp cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HGpublic.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 +[ 10%] Building CXX object modules/CMakeFiles/ks_bubble_enumeration.dir/NGraph.cpp.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_bubble_enumeration.dir/NGraph.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/NGraph.cpp cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HLpkg.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HLprivate.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 -[ 9%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/CGraph.cpp.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_run_modules.dir/CGraph.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/CGraph.cpp -[ 10%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/NGraph.cpp.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_run_modules.dir/NGraph.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/NGraph.cpp +[ 11%] Linking C executable ../../../lib/kissplice/ks_kissreadsSNPS +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ks_kissreadsSNPS.dir/link.txt --verbose=1 cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HLpublic.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 -[ 10%] Building CXX object modules/CMakeFiles/ks_print_bcc.dir/Utils.cpp.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_print_bcc.dir/Utils.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/Utils.cpp +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ks_kissreadsSNPS.dir/commons.c.o CMakeFiles/ks_kissreadsSNPS.dir/extension_algorithm.c.o CMakeFiles/ks_kissreadsSNPS.dir/interface_libchash.c.o CMakeFiles/ks_kissreadsSNPS.dir/libchash.c.o CMakeFiles/ks_kissreadsSNPS.dir/outputs.c.o CMakeFiles/ks_kissreadsSNPS.dir/coherent_algorithm.c.o CMakeFiles/ks_kissreadsSNPS.dir/couple.c.o CMakeFiles/ks_kissreadsSNPS.dir/fragment_index.c.o CMakeFiles/ks_kissreadsSNPS.dir/kissReads.c.o CMakeFiles/ks_kissreadsSNPS.dir/list.c.o CMakeFiles/ks_kissreadsSNPS.dir/tree.c.o -o ../../../lib/kissplice/ks_kissreadsSNPS -lm -lz cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HPprivate.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Ipkg.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 +[ 11%] Linking C executable ../../../../../../lib/kissplice/H5detect +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/H5detect.dir/link.txt --verbose=1 cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Iprivate.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 -[ 10%] Building CXX object modules/CMakeFiles/ks_bubble_enumeration.dir/LabelledCEdge.cpp.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_bubble_enumeration.dir/LabelledCEdge.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/LabelledCEdge.cpp +make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/H5detect.dir/H5detect.c.o -o ../../../../../../lib/kissplice/H5detect +[ 11%] Built target ks_kissreadsSNPS cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Ipublic.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 -[ 11%] Building CXX object modules/CMakeFiles/ks_bubble_enumeration.dir/NNode.cpp.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_bubble_enumeration.dir/NNode.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/NNode.cpp +[ 11%] Building CXX object modules/CMakeFiles/ks_bubble_enumeration.dir/CGraph.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Lpkg.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 -[ 11%] Linking C executable ../../../lib/kissplice/ks_kissreadsSplice -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ks_kissreadsSplice.dir/link.txt --verbose=1 -[ 11%] Building CXX object modules/CMakeFiles/ks_bubble_enumeration.dir/NEdge.cpp.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_bubble_enumeration.dir/NEdge.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/NEdge.cpp +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_bubble_enumeration.dir/CGraph.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/CGraph.cpp cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Lprivate.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ks_kissreadsSplice.dir/commons.c.o CMakeFiles/ks_kissreadsSplice.dir/extension_algorithm.c.o CMakeFiles/ks_kissreadsSplice.dir/interface_libchash.c.o CMakeFiles/ks_kissreadsSplice.dir/libchash.c.o CMakeFiles/ks_kissreadsSplice.dir/outputs.c.o CMakeFiles/ks_kissreadsSplice.dir/coherent_algorithm.c.o CMakeFiles/ks_kissreadsSplice.dir/couple.c.o CMakeFiles/ks_kissreadsSplice.dir/fragment_index.c.o CMakeFiles/ks_kissreadsSplice.dir/kissReads.c.o CMakeFiles/ks_kissreadsSplice.dir/list.c.o CMakeFiles/ks_kissreadsSplice.dir/tree.c.o -o ../../../lib/kissplice/ks_kissreadsSplice -lm -lz +make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' +[ 11%] Built target H5detect +make -f bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/build.make bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/depend +make[3]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Lpublic.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5MFpkg.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 -make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' +[ 11%] Generating ../H5lib_settings.c +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 && /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice/H5make_libsettings > /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/H5lib_settings.c cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5MFprivate.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 -[ 11%] Built target ks_kissreadsSplice cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5MMprivate.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 -[ 11%] Building CXX object modules/CMakeFiles/ks_bubble_enumeration.dir/Utils.cpp.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_bubble_enumeration.dir/Utils.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/Utils.cpp +[ 11%] Generating ../H5Tinit.c +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && ../../../../../../lib/kissplice/H5detect > /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/H5Tinit.c +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kissplice-2.5.3 /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/DependInfo.cmake --color= cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5MMpublic.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 -[ 11%] Linking CXX executable ../lib/kissplice/ks_error_removal +Dependee "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/depend.internal". +Dependee "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/depend.internal". cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5MPpkg.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/cmake -E cmake_link_script CMakeFiles/ks_error_removal.dir/link.txt --verbose=1 -[ 11%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/CEdge.cpp.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_run_modules.dir/CEdge.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/CEdge.cpp -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ks_error_removal.dir/ErrorRemoval.cpp.o CMakeFiles/ks_error_removal.dir/CEdge.cpp.o CMakeFiles/ks_error_removal.dir/LabelledCEdge.cpp.o CMakeFiles/ks_error_removal.dir/Utils.cpp.o -o ../lib/kissplice/ks_error_removal cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5MPprivate.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Opkg.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 +[ 11%] Building CXX object modules/CMakeFiles/ks_clean_duplicates.dir/CGraph.cpp.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_clean_duplicates.dir/CGraph.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/CGraph.cpp cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Oprivate.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Opublic.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Oshared.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5PLextern.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5PLprivate.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 -make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' -[ 11%] Built target ks_error_removal cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5PLpublic.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 -[ 11%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/LabelledCEdge.cpp.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_run_modules.dir/LabelledCEdge.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/LabelledCEdge.cpp cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Ppkg.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 -[ 11%] Building CXX object modules/CMakeFiles/ks_clean_duplicates.dir/CGraph.cpp.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_clean_duplicates.dir/CGraph.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/CGraph.cpp +[ 11%] Linking CXX executable ../lib/kissplice/ks_print_bcc +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/cmake -E cmake_link_script CMakeFiles/ks_print_bcc.dir/link.txt --verbose=1 cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Pprivate.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ks_print_bcc.dir/PrintBcc.cpp.o CMakeFiles/ks_print_bcc.dir/Utils.cpp.o -o ../lib/kissplice/ks_print_bcc +[ 11%] Linking CXX executable ../lib/kissplice/ks_error_removal +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/cmake -E cmake_link_script CMakeFiles/ks_error_removal.dir/link.txt --verbose=1 +[ 11%] Building CXX object modules/CMakeFiles/ks_bubble_enumeration.dir/CEdge.cpp.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_bubble_enumeration.dir/CEdge.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/CEdge.cpp cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Ppublic.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ks_error_removal.dir/ErrorRemoval.cpp.o CMakeFiles/ks_error_removal.dir/CEdge.cpp.o CMakeFiles/ks_error_removal.dir/LabelledCEdge.cpp.o CMakeFiles/ks_error_removal.dir/Utils.cpp.o -o ../lib/kissplice/ks_error_removal +make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' +[ 11%] Built target ks_print_bcc cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5RCprivate.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5RSprivate.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 -[ 12%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/NNode.cpp.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_run_modules.dir/NNode.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/NNode.cpp -[ 12%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/NEdge.cpp.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_run_modules.dir/NEdge.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/NEdge.cpp cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Rpkg.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Rprivate.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 +[ 11%] Building CXX object modules/CMakeFiles/ks_bubble_enumeration.dir/LabelledCEdge.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Rpublic.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 -[ 12%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/SplitBcc.cpp.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_run_modules.dir/SplitBcc.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/SplitBcc.cpp +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_bubble_enumeration.dir/LabelledCEdge.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/LabelledCEdge.cpp +[ 12%] Building CXX object modules/CMakeFiles/ks_bubble_enumeration.dir/NNode.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5SLprivate.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_bubble_enumeration.dir/NNode.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/NNode.cpp cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5SMpkg.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5SMprivate.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 -[ 12%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/Utils.cpp.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_run_modules.dir/Utils.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/Utils.cpp cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5STprivate.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Spkg.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 -[ 12%] Linking CXX executable ../lib/kissplice/ks_print_bcc -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/cmake -E cmake_link_script CMakeFiles/ks_print_bcc.dir/link.txt --verbose=1 cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Sprivate.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ks_print_bcc.dir/PrintBcc.cpp.o CMakeFiles/ks_print_bcc.dir/Utils.cpp.o -o ../lib/kissplice/ks_print_bcc +Scanning dependencies of target hdf5 +make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' +make -f bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/build.make bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/build cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Spublic.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 +[ 12%] Building CXX object modules/CMakeFiles/ks_bubble_enumeration.dir/NEdge.cpp.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_bubble_enumeration.dir/NEdge.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/NEdge.cpp +make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5TSprivate.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 +[ 12%] Built target ks_error_removal +[ 12%] Building CXX object modules/CMakeFiles/ks_clean_duplicates.dir/CEdge.cpp.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_clean_duplicates.dir/CEdge.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/CEdge.cpp +[ 12%] Building CXX object modules/CMakeFiles/ks_bubble_enumeration.dir/Utils.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Tpkg.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_bubble_enumeration.dir/Utils.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/Utils.cpp +make[3]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Tprivate.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 +[ 13%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5checksum.c.o +[ 13%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5.c.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5checksum.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5checksum.c +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5.c cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Tpublic.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 +[ 13%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5dbg.c.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5dbg.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5dbg.c cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5VMprivate.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 -[ 12%] Building CXX object modules/CMakeFiles/ks_clean_duplicates.dir/CEdge.cpp.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_clean_duplicates.dir/CEdge.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/CEdge.cpp -make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5WBprivate.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 -[ 12%] Built target ks_print_bcc cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Zpkg.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 -[ 13%] Building CXX object modules/CMakeFiles/ks_clean_duplicates.dir/LabelledCEdge.cpp.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Zprivate.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 +[ 14%] Building CXX object modules/CMakeFiles/ks_clean_duplicates.dir/LabelledCEdge.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_clean_duplicates.dir/LabelledCEdge.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/LabelledCEdge.cpp +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Zprivate.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 +[ 14%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5system.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Zpublic.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 -[ 13%] Building CXX object modules/CMakeFiles/ks_clean_duplicates.dir/NNode.cpp.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5system.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5system.c cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5api_adpt.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 +[ 14%] Building CXX object modules/CMakeFiles/ks_clean_duplicates.dir/NNode.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_clean_duplicates.dir/NNode.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/NNode.cpp -[ 13%] Building CXX object modules/CMakeFiles/ks_clean_duplicates.dir/NEdge.cpp.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_clean_duplicates.dir/NEdge.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/NEdge.cpp +[ 14%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5timer.c.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5timer.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5timer.c +[ 15%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5trace.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5overflow.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 -[ 13%] Building CXX object modules/CMakeFiles/ks_clean_duplicates.dir/Utils.cpp.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_clean_duplicates.dir/Utils.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/Utils.cpp +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5trace.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5trace.c +[ 15%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5A.c.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5A.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5A.c cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5private.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5public.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 +[ 15%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Abtree2.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5version.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Abtree2.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Abtree2.c cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5win32defs.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/hdf5.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/H5pubconf.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 +[ 15%] Building CXX object modules/CMakeFiles/ks_clean_duplicates.dir/NEdge.cpp.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_clean_duplicates.dir/NEdge.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/NEdge.cpp make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' -[ 13%] Built target hdf5_postbuild -[ 13%] Linking C executable ../../../../../../lib/kissplice/H5detect -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/H5detect.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/H5detect.dir/H5detect.c.o -o ../../../../../../lib/kissplice/H5detect -make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' -[ 13%] Built target H5detect -make -f bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/build.make bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/depend -make[3]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' -[ 13%] Generating ../H5lib_settings.c -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 && /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice/H5make_libsettings > /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/H5lib_settings.c -[ 13%] Generating ../H5Tinit.c -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && ../../../../../../lib/kissplice/H5detect > /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/H5Tinit.c -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kissplice-2.5.3 /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/DependInfo.cmake --color= -Dependee "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/depend.internal". -Dependee "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/depend.internal". -Scanning dependencies of target hdf5 -make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' -make -f bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/build.make bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/build -make[3]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' -[ 13%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5.c.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5.c -[ 13%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5dbg.c.o -[ 14%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5checksum.c.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5checksum.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5checksum.c -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5dbg.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5dbg.c -[ 14%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5system.c.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5system.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5system.c -[ 14%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5timer.c.o -[ 15%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5trace.c.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5timer.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5timer.c -[ 15%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5A.c.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5trace.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5trace.c -[ 15%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Abtree2.c.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5A.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5A.c -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Abtree2.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Abtree2.c -[ 15%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Adeprec.c.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Adeprec.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Adeprec.c [ 15%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Adense.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Adense.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Adense.c +[ 15%] Built target hdf5_postbuild +[ 15%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Adeprec.c.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Adeprec.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Adeprec.c [ 16%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Aint.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Aint.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Aint.c -[ 16%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Atest.c.o +[ 17%] Linking CXX executable ../lib/kissplice/ks_run_modules +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/cmake -E cmake_link_script CMakeFiles/ks_run_modules.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ks_run_modules.dir/run.cpp.o CMakeFiles/ks_run_modules.dir/CycleCompression.cpp.o CMakeFiles/ks_run_modules.dir/NGraph.cpp.o CMakeFiles/ks_run_modules.dir/CGraph.cpp.o CMakeFiles/ks_run_modules.dir/CEdge.cpp.o CMakeFiles/ks_run_modules.dir/LabelledCEdge.cpp.o CMakeFiles/ks_run_modules.dir/NNode.cpp.o CMakeFiles/ks_run_modules.dir/NEdge.cpp.o CMakeFiles/ks_run_modules.dir/SplitBcc.cpp.o CMakeFiles/ks_run_modules.dir/Utils.cpp.o -o ../lib/kissplice/ks_run_modules +[ 17%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Atest.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Atest.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Atest.c -[ 16%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5AC.c.o -[ 16%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5B.c.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5B.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5B.c +[ 17%] Building CXX object modules/CMakeFiles/ks_clean_duplicates.dir/Utils.cpp.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_clean_duplicates.dir/Utils.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/Utils.cpp +[ 17%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5AC.c.o +[ 17%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5B2cache.c.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5B2cache.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5B2cache.c cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5AC.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5AC.c -[ 17%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5B2.c.o +[ 17%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5B.c.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5B.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5B.c +[ 18%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5B2.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5B2.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5B2.c -[ 17%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5B2cache.c.o -[ 17%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5B2dbg.c.o +make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' +[ 18%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5B2dbg.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5B2dbg.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5B2dbg.c -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5B2cache.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5B2cache.c -[ 17%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5B2hdr.c.o +[ 18%] Built target ks_run_modules +[ 18%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5B2hdr.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5B2hdr.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5B2hdr.c -[ 18%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5B2int.c.o +[ 19%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5B2int.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5B2int.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5B2int.c -[ 18%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5B2stat.c.o +[ 19%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5B2stat.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5B2stat.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5B2stat.c -[ 18%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5B2test.c.o +[ 19%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5B2test.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5B2test.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5B2test.c -[ 18%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Bcache.c.o +[ 19%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Bcache.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Bcache.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Bcache.c -[ 18%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Bdbg.c.o +[ 19%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Bdbg.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Bdbg.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Bdbg.c -[ 19%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5D.c.o +[ 20%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5D.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5D.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5D.c -[ 19%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Dcompact.c.o -[ 19%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Dbtree.c.o +[ 20%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Dcompact.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Dcompact.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Dcompact.c +[ 20%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Dbtree.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Dbtree.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Dbtree.c -[ 19%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Dchunk.c.o +[ 20%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Dchunk.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Dchunk.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Dchunk.c -[ 20%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Dcontig.c.o +[ 21%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Dcontig.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Dcontig.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Dcontig.c -[ 20%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Ddbg.c.o -[ 20%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Ddeprec.c.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Ddbg.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Ddbg.c +[ 21%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Ddeprec.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Ddeprec.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Ddeprec.c -[ 20%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Defl.c.o +[ 21%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Ddbg.c.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Ddbg.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Ddbg.c +[ 21%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Defl.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Defl.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Defl.c -[ 21%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Dfill.c.o +[ 22%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Dfill.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Dfill.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Dfill.c -[ 21%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Dint.c.o +[ 22%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Dint.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Dint.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Dint.c -[ 21%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Dio.c.o +[ 22%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Dio.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Dio.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Dio.c -[ 21%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Dlayout.c.o +[ 22%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Dlayout.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Dlayout.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Dlayout.c -[ 21%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Dmpio.c.o +[ 22%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Dmpio.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Dmpio.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Dmpio.c -[ 22%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Doh.c.o +[ 23%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Doh.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Doh.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Doh.c -[ 22%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Dscatgath.c.o +[ 23%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Dscatgath.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Dscatgath.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Dscatgath.c -[ 22%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Dselect.c.o +[ 23%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Dselect.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Dselect.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Dselect.c -[ 22%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Dtest.c.o +[ 23%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Dtest.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Dtest.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Dtest.c -[ 23%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5E.c.o +[ 24%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5E.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5E.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5E.c -[ 23%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Edeprec.c.o +[ 24%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Edeprec.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Edeprec.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Edeprec.c -[ 23%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Eint.c.o +[ 24%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Eint.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Eint.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Eint.c -[ 23%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5F.c.o -[ 24%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Fint.c.o +[ 24%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5F.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5F.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5F.c +[ 25%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Fint.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Fint.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Fint.c -[ 24%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Faccum.c.o +[ 25%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Faccum.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Faccum.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Faccum.c -[ 24%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Fcwfs.c.o +[ 25%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Fcwfs.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Fcwfs.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Fcwfs.c -[ 24%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Fdbg.c.o +[ 25%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Fdbg.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Fdbg.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Fdbg.c -[ 24%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Fefc.c.o +[ 25%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Fefc.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Fefc.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Fefc.c -[ 25%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Ffake.c.o +[ 26%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Ffake.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Ffake.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Ffake.c -[ 25%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Fio.c.o -[ 25%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Fmount.c.o +[ 26%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Fio.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Fio.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Fio.c +[ 26%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Fmount.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Fmount.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Fmount.c -[ 25%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Fmpi.c.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Fmpi.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Fmpi.c -[ 26%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Fquery.c.o +[ 27%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Fquery.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Fquery.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Fquery.c -[ 26%] Linking CXX executable ../lib/kissplice/ks_bubble_enumeration -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/cmake -E cmake_link_script CMakeFiles/ks_bubble_enumeration.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ks_bubble_enumeration.dir/BubbleEnumeration.cpp.o CMakeFiles/ks_bubble_enumeration.dir/CycleCompression.cpp.o CMakeFiles/ks_bubble_enumeration.dir/NGraph.cpp.o CMakeFiles/ks_bubble_enumeration.dir/CGraph.cpp.o CMakeFiles/ks_bubble_enumeration.dir/CEdge.cpp.o CMakeFiles/ks_bubble_enumeration.dir/LabelledCEdge.cpp.o CMakeFiles/ks_bubble_enumeration.dir/NNode.cpp.o CMakeFiles/ks_bubble_enumeration.dir/NEdge.cpp.o CMakeFiles/ks_bubble_enumeration.dir/Utils.cpp.o -o ../lib/kissplice/ks_bubble_enumeration -[ 26%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Fsfile.c.o +[ 27%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Fmpi.c.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Fmpi.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Fmpi.c +[ 27%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Fsfile.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Fsfile.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Fsfile.c -[ 26%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Fsuper.c.o +[ 27%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Fsuper.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Fsuper.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Fsuper.c -[ 26%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Fsuper_cache.c.o +[ 27%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Fsuper_cache.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Fsuper_cache.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Fsuper_cache.c -[ 27%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Ftest.c.o +[ 28%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Ftest.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Ftest.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Ftest.c -[ 27%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5FD.c.o +[ 28%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5FD.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5FD.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FD.c -[ 27%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5FDcore.c.o +[ 28%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5FDcore.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5FDcore.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDcore.c -[ 28%] Linking CXX executable ../lib/kissplice/ks_run_modules -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/cmake -E cmake_link_script CMakeFiles/ks_run_modules.dir/link.txt --verbose=1 -make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' [ 28%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5FDdirect.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5FDdirect.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDdirect.c [ 28%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5FDfamily.c.o -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ks_run_modules.dir/run.cpp.o CMakeFiles/ks_run_modules.dir/CycleCompression.cpp.o CMakeFiles/ks_run_modules.dir/NGraph.cpp.o CMakeFiles/ks_run_modules.dir/CGraph.cpp.o CMakeFiles/ks_run_modules.dir/CEdge.cpp.o CMakeFiles/ks_run_modules.dir/LabelledCEdge.cpp.o CMakeFiles/ks_run_modules.dir/NNode.cpp.o CMakeFiles/ks_run_modules.dir/NEdge.cpp.o CMakeFiles/ks_run_modules.dir/SplitBcc.cpp.o CMakeFiles/ks_run_modules.dir/Utils.cpp.o -o ../lib/kissplice/ks_run_modules cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5FDfamily.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDfamily.c -[ 28%] Built target ks_bubble_enumeration [ 29%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5FDint.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5FDint.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDint.c [ 29%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5FDlog.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5FDlog.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDlog.c -[ 30%] Linking CXX executable ../lib/kissplice/ks_clean_duplicates -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/cmake -E cmake_link_script CMakeFiles/ks_clean_duplicates.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ks_clean_duplicates.dir/CleanDuplicates.cpp.o CMakeFiles/ks_clean_duplicates.dir/CycleCompression.cpp.o CMakeFiles/ks_clean_duplicates.dir/NGraph.cpp.o CMakeFiles/ks_clean_duplicates.dir/CGraph.cpp.o CMakeFiles/ks_clean_duplicates.dir/CEdge.cpp.o CMakeFiles/ks_clean_duplicates.dir/LabelledCEdge.cpp.o CMakeFiles/ks_clean_duplicates.dir/NNode.cpp.o CMakeFiles/ks_clean_duplicates.dir/NEdge.cpp.o CMakeFiles/ks_clean_duplicates.dir/Utils.cpp.o -o ../lib/kissplice/ks_clean_duplicates -[ 30%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5FDmpi.c.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5FDmpi.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDmpi.c -[ 30%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5FDmpio.c.o +[ 29%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5FDmpio.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5FDmpio.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDmpio.c -[ 31%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5FDmulti.c.o +[ 29%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5FDmpi.c.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5FDmpi.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDmpi.c +[ 30%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5FDmulti.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5FDmulti.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDmulti.c -make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' -[ 31%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5FDsec2.c.o +[ 30%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5FDsec2.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5FDsec2.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDsec2.c -[ 31%] Built target ks_run_modules -[ 31%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5FDspace.c.o +[ 30%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5FDspace.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5FDspace.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDspace.c -[ 31%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5FDstdio.c.o +[ 30%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5FDstdio.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5FDstdio.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDstdio.c -[ 31%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5FS.c.o +[ 30%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5FS.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5FS.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FS.c -[ 32%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5FScache.c.o +[ 31%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5FScache.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5FScache.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FScache.c -make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' -[ 32%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5FSdbg.c.o -[ 32%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5FSsection.c.o -[ 32%] Built target ks_clean_duplicates +[ 31%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5FSdbg.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5FSdbg.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FSdbg.c +[ 31%] Linking CXX executable ../lib/kissplice/ks_bubble_enumeration +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/cmake -E cmake_link_script CMakeFiles/ks_bubble_enumeration.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ks_bubble_enumeration.dir/BubbleEnumeration.cpp.o CMakeFiles/ks_bubble_enumeration.dir/CycleCompression.cpp.o CMakeFiles/ks_bubble_enumeration.dir/NGraph.cpp.o CMakeFiles/ks_bubble_enumeration.dir/CGraph.cpp.o CMakeFiles/ks_bubble_enumeration.dir/CEdge.cpp.o CMakeFiles/ks_bubble_enumeration.dir/LabelledCEdge.cpp.o CMakeFiles/ks_bubble_enumeration.dir/NNode.cpp.o CMakeFiles/ks_bubble_enumeration.dir/NEdge.cpp.o CMakeFiles/ks_bubble_enumeration.dir/Utils.cpp.o -o ../lib/kissplice/ks_bubble_enumeration +[ 31%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5FSsection.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5FSsection.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FSsection.c -[ 32%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5FSstat.c.o +[ 31%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5FSstat.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5FSstat.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FSstat.c -[ 33%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5FStest.c.o +[ 32%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5FStest.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5FStest.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FStest.c -[ 33%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5G.c.o +[ 32%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5G.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5G.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5G.c -[ 33%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Gbtree2.c.o +[ 32%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Gbtree2.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Gbtree2.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Gbtree2.c -[ 33%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Gcache.c.o +[ 32%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Gcache.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Gcache.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Gcache.c -[ 34%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Gcompact.c.o +[ 33%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Gcompact.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Gcompact.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Gcompact.c -[ 34%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Gdense.c.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Gdense.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Gdense.c -[ 34%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Gdeprec.c.o +make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' +[ 33%] Built target ks_bubble_enumeration +[ 33%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Gdeprec.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Gdeprec.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Gdeprec.c -[ 34%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Gent.c.o +[ 33%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Gdense.c.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Gdense.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Gdense.c +[ 33%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Gent.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Gent.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Gent.c +[ 34%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Glink.c.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Glink.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Glink.c [ 34%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Gint.c.o -[ 35%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Glink.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Gint.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Gint.c -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Glink.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Glink.c -[ 35%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Gloc.c.o +[ 34%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Gloc.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Gloc.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Gloc.c -[ 35%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Gname.c.o +[ 34%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Gname.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Gname.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Gname.c +[ 35%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Gobj.c.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Gobj.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Gobj.c [ 35%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Gnode.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Gnode.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Gnode.c -[ 36%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Gobj.c.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Gobj.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Gobj.c -[ 36%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Goh.c.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Goh.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Goh.c -[ 36%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Groot.c.o +[ 35%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Goh.c.o +[ 35%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Groot.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Groot.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Groot.c -[ 36%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Gstab.c.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Goh.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Goh.c +[ 35%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Gstab.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Gstab.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Gstab.c -[ 37%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Gtest.c.o +[ 36%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Gtest.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Gtest.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Gtest.c -[ 37%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Gtraverse.c.o +[ 36%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Gtraverse.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Gtraverse.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Gtraverse.c -[ 37%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HF.c.o +[ 36%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HF.c.o +[ 36%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HFbtree2.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5HF.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HF.c -[ 37%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HFbtree2.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5HFbtree2.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HFbtree2.c -[ 37%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HFcache.c.o -[ 38%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HFdbg.c.o +[ 36%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HFcache.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5HFcache.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HFcache.c +[ 37%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HFdbg.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5HFdbg.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HFdbg.c -[ 38%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HFdblock.c.o +[ 37%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HFdblock.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5HFdblock.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HFdblock.c -[ 38%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HFdtable.c.o +[ 37%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HFdtable.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5HFdtable.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HFdtable.c -[ 38%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HFhdr.c.o +[ 37%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HFhdr.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5HFhdr.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HFhdr.c -[ 39%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HFhuge.c.o +[ 38%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HFhuge.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5HFhuge.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HFhuge.c -[ 39%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HFiblock.c.o +[ 38%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HFiblock.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5HFiblock.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HFiblock.c -[ 39%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HFiter.c.o +[ 38%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HFiter.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5HFiter.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HFiter.c -[ 39%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HFman.c.o +[ 38%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HFman.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5HFman.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HFman.c -[ 40%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HFsection.c.o +[ 39%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HFsection.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5HFsection.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HFsection.c -[ 40%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HFspace.c.o +[ 39%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HFspace.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5HFspace.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HFspace.c -[ 40%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HFstat.c.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5HFstat.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HFstat.c -[ 40%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HFtest.c.o +[ 39%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HFtest.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5HFtest.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HFtest.c -[ 40%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HFtiny.c.o +[ 39%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HFstat.c.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5HFstat.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HFstat.c +[ 39%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HFtiny.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5HFtiny.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HFtiny.c -[ 41%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HG.c.o +[ 40%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HG.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5HG.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HG.c -[ 41%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HGcache.c.o +[ 40%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HGcache.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5HGcache.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HGcache.c -[ 41%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HGdbg.c.o +[ 40%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HGdbg.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5HGdbg.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HGdbg.c -[ 42%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HL.c.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5HL.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HL.c -[ 42%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HGquery.c.o +[ 40%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HGquery.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5HGquery.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HGquery.c -[ 42%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HLcache.c.o +[ 41%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HL.c.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5HL.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HL.c +[ 41%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HLcache.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5HLcache.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HLcache.c -[ 42%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HLdbg.c.o +[ 41%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HLdbg.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5HLdbg.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HLdbg.c -[ 42%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HLint.c.o +[ 41%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HLint.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5HLint.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HLint.c -[ 43%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5MF.c.o +[ 42%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5MF.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5MF.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5MF.c -[ 43%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5MFaggr.c.o +[ 42%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5MFaggr.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5MFaggr.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5MFaggr.c -[ 43%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5MFdbg.c.o +[ 42%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5MFdbg.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5MFdbg.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5MFdbg.c -[ 43%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5MP.c.o +[ 42%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5MFsection.c.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5MFsection.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5MFsection.c +[ 42%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5MP.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5MP.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5MP.c -[ 43%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5MFsection.c.o +[ 43%] Linking CXX executable ../lib/kissplice/ks_clean_duplicates [ 44%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5MPtest.c.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5MFsection.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5MFsection.c +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/cmake -E cmake_link_script CMakeFiles/ks_clean_duplicates.dir/link.txt --verbose=1 cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5MPtest.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5MPtest.c [ 44%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5O.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5O.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5O.c +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ks_clean_duplicates.dir/CleanDuplicates.cpp.o CMakeFiles/ks_clean_duplicates.dir/CycleCompression.cpp.o CMakeFiles/ks_clean_duplicates.dir/NGraph.cpp.o CMakeFiles/ks_clean_duplicates.dir/CGraph.cpp.o CMakeFiles/ks_clean_duplicates.dir/CEdge.cpp.o CMakeFiles/ks_clean_duplicates.dir/LabelledCEdge.cpp.o CMakeFiles/ks_clean_duplicates.dir/NNode.cpp.o CMakeFiles/ks_clean_duplicates.dir/NEdge.cpp.o CMakeFiles/ks_clean_duplicates.dir/Utils.cpp.o -o ../lib/kissplice/ks_clean_duplicates [ 44%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Oainfo.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Oainfo.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Oainfo.c [ 44%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Oalloc.c.o @@ -1664,18 +1697,20 @@ cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Obogus.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Obogus.c [ 45%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Obtreek.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Obtreek.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Obtreek.c +make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' +[ 45%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Ocont.c.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Ocont.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Ocont.c [ 46%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Ocache.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Ocache.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Ocache.c [ 46%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Ochunk.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Ochunk.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Ochunk.c -[ 46%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Ocont.c.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Ocont.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Ocont.c +[ 46%] Built target ks_clean_duplicates [ 46%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Ocopy.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Ocopy.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Ocopy.c -[ 46%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Odbg.c.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Odbg.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Odbg.c [ 47%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Odrvinfo.c.o +[ 47%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Odbg.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Odrvinfo.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Odrvinfo.c +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Odbg.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Odbg.c [ 47%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Odtype.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Odtype.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Odtype.c [ 47%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Oefl.c.o @@ -1691,10 +1726,10 @@ [ 48%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Olink.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Olink.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Olink.c [ 49%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Omessage.c.o -[ 49%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Omtime.c.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Omtime.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Omtime.c cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Omessage.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Omessage.c +[ 49%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Omtime.c.o [ 49%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Oname.c.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Omtime.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Omtime.c cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Oname.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Oname.c [ 49%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Onull.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Onull.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Onull.c @@ -1706,15 +1741,15 @@ cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Osdspace.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Osdspace.c [ 50%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Oshared.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Oshared.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Oshared.c +[ 50%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Oshmesg.c.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Oshmesg.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Oshmesg.c [ 51%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Ostab.c.o -[ 51%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Oshmesg.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Ostab.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Ostab.c -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Oshmesg.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Oshmesg.c [ 51%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Otest.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Otest.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Otest.c [ 51%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Ounknown.c.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Ounknown.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Ounknown.c [ 51%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5P.c.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Ounknown.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Ounknown.c cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5P.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5P.c [ 51%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Pacpl.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Pacpl.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Pacpl.c @@ -1722,20 +1757,20 @@ cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Pdapl.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Pdapl.c [ 52%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Pdcpl.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Pdcpl.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Pdcpl.c -[ 52%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Pdeprec.c.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Pdeprec.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Pdeprec.c [ 52%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Pdxpl.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Pdxpl.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Pdxpl.c +[ 52%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Pdeprec.c.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Pdeprec.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Pdeprec.c [ 53%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Pfapl.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Pfapl.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Pfapl.c [ 53%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Pfcpl.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Pfcpl.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Pfcpl.c [ 53%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Pfmpl.c.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Pfmpl.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Pfmpl.c [ 53%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Pgcpl.c.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Pgcpl.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Pgcpl.c +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Pfmpl.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Pfmpl.c [ 54%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Pint.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Pint.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Pint.c +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Pgcpl.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Pgcpl.c [ 54%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Plapl.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Plapl.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Plapl.c [ 54%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Plcpl.c.o @@ -1752,22 +1787,22 @@ cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5PL.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5PL.c [ 55%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5R.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5R.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5R.c +[ 55%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5RC.c.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5RC.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5RC.c [ 56%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Rdeprec.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Rdeprec.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Rdeprec.c -[ 56%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5RC.c.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5RC.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5RC.c [ 56%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5RS.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5RS.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5RS.c -[ 56%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5S.c.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5S.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5S.c [ 57%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Sall.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Sall.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Sall.c +[ 57%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5S.c.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5S.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5S.c [ 57%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Sdbg.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Sdbg.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Sdbg.c -[ 57%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Shyper.c.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Shyper.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Shyper.c [ 57%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Smpio.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Smpio.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Smpio.c +[ 57%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Shyper.c.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Shyper.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Shyper.c [ 57%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Snone.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Snone.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Snone.c [ 58%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Spoint.c.o @@ -1780,28 +1815,28 @@ cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5SM.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5SM.c [ 59%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5SMbtree2.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5SMbtree2.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5SMbtree2.c +[ 59%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5SMtest.c.o [ 59%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5SMcache.c.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5SMtest.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5SMtest.c cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5SMcache.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5SMcache.c [ 59%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5SMmessage.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5SMmessage.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5SMmessage.c -[ 59%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5SMtest.c.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5SMtest.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5SMtest.c [ 60%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5T.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5T.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5T.c [ 60%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Tarray.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Tarray.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Tarray.c -[ 60%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Tbit.c.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Tbit.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Tbit.c [ 60%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Tcommit.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Tcommit.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Tcommit.c +[ 60%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Tbit.c.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Tbit.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Tbit.c [ 60%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Tcompound.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Tcompound.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Tcompound.c [ 61%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Tconv.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Tconv.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Tconv.c -[ 61%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Tcset.c.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Tcset.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Tcset.c [ 61%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Tdbg.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Tdbg.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Tdbg.c +[ 61%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Tcset.c.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Tcset.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Tcset.c [ 61%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Tdeprec.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Tdeprec.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Tdeprec.c [ 62%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Tenum.c.o @@ -1810,26 +1845,26 @@ cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Tfields.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Tfields.c [ 62%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Tfixed.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Tfixed.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Tfixed.c -[ 62%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Tfloat.c.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Tfloat.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Tfloat.c [ 63%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Tnative.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Tnative.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Tnative.c +[ 63%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Tfloat.c.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Tfloat.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Tfloat.c [ 63%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Toffset.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Toffset.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Toffset.c [ 63%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Toh.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Toh.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Toh.c [ 63%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Topaque.c.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Topaque.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Topaque.c [ 63%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Torder.c.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Topaque.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Topaque.c cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Torder.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Torder.c [ 64%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Tpad.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Tpad.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Tpad.c -[ 64%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Tprecis.c.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Tprecis.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Tprecis.c [ 64%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Tstrpad.c.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Tstrpad.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Tstrpad.c [ 64%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Tvisit.c.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Tstrpad.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Tstrpad.c +[ 64%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Tprecis.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Tvisit.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Tvisit.c +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Tprecis.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Tprecis.c [ 65%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Tvlen.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Tvlen.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Tvlen.c [ 65%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Z.c.o @@ -1840,19 +1875,19 @@ cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Zfletcher32.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Zfletcher32.c [ 66%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Znbit.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Znbit.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Znbit.c +[ 66%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Zszip.c.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Zszip.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Zszip.c [ 66%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Zscaleoffset.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Zscaleoffset.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Zscaleoffset.c [ 66%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Zshuffle.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Zshuffle.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Zshuffle.c -[ 66%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Zszip.c.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Zszip.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Zszip.c [ 66%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Ztrans.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Ztrans.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Ztrans.c [ 67%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5C.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5C.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5C.c [ 67%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5CS.c.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5CS.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5CS.c [ 67%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5FL.c.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5CS.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5CS.c cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5FL.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FL.c [ 67%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5FO.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5FO.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FO.c @@ -1869,8 +1904,8 @@ [ 69%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5MM.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5MM.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5MM.c [ 69%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5SL.c.o -[ 69%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5ST.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5SL.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5SL.c +[ 69%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5ST.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5ST.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5ST.c [ 69%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5TS.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5TS.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5TS.c @@ -1892,42 +1927,42 @@ make -f bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/build.make bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/depend make -f bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib/CMakeFiles/hdf5_tools.dir/build.make bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib/CMakeFiles/hdf5_tools.dir/depend make[3]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kissplice-2.5.3 /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib/CMakeFiles/hdf5_tools.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kissplice-2.5.3 /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/DependInfo.cmake --color= -Dependee "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/depend.internal". Dependee "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib/CMakeFiles/hdf5_tools.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib/CMakeFiles/hdf5_tools.dir/depend.internal". Dependee "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib/CMakeFiles/hdf5_tools.dir/depend.internal". +Dependee "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/depend.internal". Dependee "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/depend.internal". Scanning dependencies of target hdf5_tools make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' make -f bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib/CMakeFiles/hdf5_tools.dir/build.make bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib/CMakeFiles/hdf5_tools.dir/build make[3]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' -[ 71%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib/CMakeFiles/hdf5_tools.dir/h5diff.c.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5_tools.dir/h5diff.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib/h5diff.c [ 71%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib/CMakeFiles/hdf5_tools.dir/h5diff_array.c.o +[ 71%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib/CMakeFiles/hdf5_tools.dir/h5diff.c.o [ 71%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib/CMakeFiles/hdf5_tools.dir/h5diff_attr.c.o +[ 72%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib/CMakeFiles/hdf5_tools.dir/h5diff_util.c.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5_tools.dir/h5diff.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib/h5diff.c cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5_tools.dir/h5diff_array.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib/h5diff_array.c -[ 71%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib/CMakeFiles/hdf5_tools.dir/h5diff_dset.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5_tools.dir/h5diff_attr.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib/h5diff_attr.c -[ 72%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib/CMakeFiles/hdf5_tools.dir/h5diff_util.c.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5_tools.dir/h5diff_dset.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib/h5diff_dset.c -[ 72%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib/CMakeFiles/hdf5_tools.dir/h5tools.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5_tools.dir/h5diff_util.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib/h5diff_util.c -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5_tools.dir/h5tools.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib/h5tools.c -[ 72%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib/CMakeFiles/hdf5_tools.dir/h5tools_dump.c.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5_tools.dir/h5tools_dump.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib/h5tools_dump.c -[ 72%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib/CMakeFiles/hdf5_tools.dir/h5tools_filters.c.o +[ 72%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib/CMakeFiles/hdf5_tools.dir/h5tools.c.o +[ 72%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib/CMakeFiles/hdf5_tools.dir/h5tools_utils.c.o [ 73%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib/CMakeFiles/hdf5_tools.dir/h5tools_ref.c.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5_tools.dir/h5tools_filters.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib/h5tools_filters.c +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5_tools.dir/h5tools.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib/h5tools.c +[ 73%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib/CMakeFiles/hdf5_tools.dir/h5tools_dump.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5_tools.dir/h5tools_ref.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib/h5tools_ref.c +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5_tools.dir/h5tools_dump.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib/h5tools_dump.c +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5_tools.dir/h5tools_utils.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib/h5tools_utils.c +[ 73%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib/CMakeFiles/hdf5_tools.dir/h5tools_filters.c.o +[ 73%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib/CMakeFiles/hdf5_tools.dir/h5diff_dset.c.o [ 73%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib/CMakeFiles/hdf5_tools.dir/h5tools_type.c.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5_tools.dir/h5tools_filters.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib/h5tools_filters.c [ 73%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib/CMakeFiles/hdf5_tools.dir/h5tools_str.c.o +[ 74%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib/CMakeFiles/hdf5_tools.dir/h5trav.c.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5_tools.dir/h5diff_dset.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib/h5diff_dset.c cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5_tools.dir/h5tools_str.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib/h5tools_str.c -[ 73%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib/CMakeFiles/hdf5_tools.dir/h5tools_utils.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5_tools.dir/h5tools_type.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib/h5tools_type.c -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5_tools.dir/h5tools_utils.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib/h5tools_utils.c -[ 74%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib/CMakeFiles/hdf5_tools.dir/h5trav.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5_tools.dir/h5trav.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib/h5trav.c [ 74%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib/CMakeFiles/hdf5_tools.dir/io_timer.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5_tools.dir/io_timer.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib/io_timer.c @@ -1935,48 +1970,48 @@ make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' make -f bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/build.make bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/build make[3]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' +[ 74%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bank/impl/BankConverterAlgorithm.cpp +[ 74%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bank/impl/BankFasta.cpp +cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 74%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/Bank.cpp.o -[ 74%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/Bank.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bank/impl/Bank.cpp -[ 75%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o +[ 74%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bank/impl/BankAlbum.cpp -[ 75%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bank/impl/BankBinary.cpp -[ 75%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o -cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bank/impl/BankConverterAlgorithm.cpp +[ 75%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bank/impl/BankFasta.cpp +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bank/impl/BankBinary.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 75%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o -[ 76%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bank/impl/BankHelpers.cpp +[ 76%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bank/impl/BankRandom.cpp -[ 76%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bcalm_algo.cpp.o +cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 76%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o +[ 76%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bcalm_algo.cpp.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bank/impl/BankSplitter.cpp cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bcalm_algo.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp [ 76%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bglue_algo.cpp.o [ 77%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/logging.cpp.o -cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] -cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bank/impl/BankSplitter.cpp cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bglue_algo.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bglue_algo.cpp +cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/logging.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/logging.cpp +[ 77%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 77%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/ograph.cpp.o +cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/ograph.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/ograph.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] -[ 77%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp [ 77%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Frontline.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] -cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 77%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] @@ -1986,46 +2021,46 @@ [ 78%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/IterativeExtensions.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] -[ 78%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/LinkTigs.cpp.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/LinkTigs.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/LinkTigs.cpp [ 78%] Linking C static library ../../../../lib/None/libhdf5_tools.a cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib && /usr/bin/cmake -P CMakeFiles/hdf5_tools.dir/cmake_clean_target.cmake -cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/hdf5_tools.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../lib/None/libhdf5_tools.a CMakeFiles/hdf5_tools.dir/h5diff.c.o CMakeFiles/hdf5_tools.dir/h5diff_array.c.o CMakeFiles/hdf5_tools.dir/h5diff_attr.c.o CMakeFiles/hdf5_tools.dir/h5diff_dset.c.o CMakeFiles/hdf5_tools.dir/h5diff_util.c.o CMakeFiles/hdf5_tools.dir/h5tools.c.o CMakeFiles/hdf5_tools.dir/h5tools_dump.c.o CMakeFiles/hdf5_tools.dir/h5tools_filters.c.o CMakeFiles/hdf5_tools.dir/h5tools_ref.c.o CMakeFiles/hdf5_tools.dir/h5tools_str.c.o CMakeFiles/hdf5_tools.dir/h5tools_type.c.o CMakeFiles/hdf5_tools.dir/h5tools_utils.c.o CMakeFiles/hdf5_tools.dir/h5trav.c.o CMakeFiles/hdf5_tools.dir/io_timer.c.o -[ 78%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Simplifications.cpp.o /usr/bin/ranlib ../../../../lib/None/libhdf5_tools.a -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Simplifications.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' -cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 78%] Built target hdf5_tools make -f bcalm/ext/gatb-core/thirdparty/hdf5/tools/h5dump/CMakeFiles/gatb-h5dump.dir/build.make bcalm/ext/gatb-core/thirdparty/hdf5/tools/h5dump/CMakeFiles/gatb-h5dump.dir/depend make[3]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kissplice-2.5.3 /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/h5dump /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/h5dump /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/h5dump/CMakeFiles/gatb-h5dump.dir/DependInfo.cmake --color= -[ 79%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Terminator.cpp -cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] Dependee "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/h5dump/CMakeFiles/gatb-h5dump.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/h5dump/CMakeFiles/gatb-h5dump.dir/depend.internal". Dependee "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/h5dump/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/h5dump/CMakeFiles/gatb-h5dump.dir/depend.internal". Scanning dependencies of target gatb-h5dump make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' make -f bcalm/ext/gatb-core/thirdparty/hdf5/tools/h5dump/CMakeFiles/gatb-h5dump.dir/build.make bcalm/ext/gatb-core/thirdparty/hdf5/tools/h5dump/CMakeFiles/gatb-h5dump.dir/build make[3]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' -[ 79%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/tools/h5dump/CMakeFiles/gatb-h5dump.dir/h5dump.c.o +[ 78%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/tools/h5dump/CMakeFiles/gatb-h5dump.dir/h5dump.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/h5dump && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIE -w -o CMakeFiles/gatb-h5dump.dir/h5dump.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/h5dump/h5dump.c -[ 79%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Traversal.cpp +[ 78%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/LinkTigs.cpp.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/LinkTigs.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/LinkTigs.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] -[ 80%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/tools/h5dump/CMakeFiles/gatb-h5dump.dir/h5dump_ddl.c.o +[ 79%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/tools/h5dump/CMakeFiles/gatb-h5dump.dir/h5dump_ddl.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/h5dump && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIE -w -o CMakeFiles/gatb-h5dump.dir/h5dump_ddl.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/h5dump/h5dump_ddl.c +[ 79%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Simplifications.cpp.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Simplifications.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp +cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] +[ 80%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Terminator.cpp +cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] +[ 80%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Traversal.cpp +cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 80%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] +[ 80%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/tools/h5dump/CMakeFiles/gatb-h5dump.dir/h5dump_xml.c.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/h5dump && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIE -w -o CMakeFiles/gatb-h5dump.dir/h5dump_xml.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/h5dump/h5dump_xml.c [ 80%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] -[ 80%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/tools/h5dump/CMakeFiles/gatb-h5dump.dir/h5dump_xml.c.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/h5dump && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIE -w -o CMakeFiles/gatb-h5dump.dir/h5dump_xml.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/h5dump/h5dump_xml.c [ 81%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/BloomBuilder.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] @@ -2035,23 +2070,25 @@ cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/ConfigurationAlgorithm.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/ConfigurationAlgorithm.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] +[ 81%] Linking C executable ../../../../../../../lib/kissplice/gatb-h5dump +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/h5dump && /usr/bin/cmake -E cmake_link_script CMakeFiles/gatb-h5dump.dir/link.txt --verbose=1 +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/gatb-h5dump.dir/h5dump.c.o CMakeFiles/gatb-h5dump.dir/h5dump_ddl.c.o CMakeFiles/gatb-h5dump.dir/h5dump_xml.c.o -o ../../../../../../../lib/kissplice/gatb-h5dump ../../../../lib/None/libhdf5_tools.a ../../../../lib/None/libhdf5.a -lm -ldl -lz -ldl -lz [ 81%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 81%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] +make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' +[ 81%] Built target gatb-h5dump [ 82%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/LinearCounter.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/LinearCounter.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/LinearCounter.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 82%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] -[ 82%] Linking C executable ../../../../../../../lib/kissplice/gatb-h5dump -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/h5dump && /usr/bin/cmake -E cmake_link_script CMakeFiles/gatb-h5dump.dir/link.txt --verbose=1 [ 82%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.cpp -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/gatb-h5dump.dir/h5dump.c.o CMakeFiles/gatb-h5dump.dir/h5dump_ddl.c.o CMakeFiles/gatb-h5dump.dir/h5dump_xml.c.o -o ../../../../../../../lib/kissplice/gatb-h5dump ../../../../lib/None/libhdf5_tools.a ../../../../lib/None/libhdf5.a -lm -ldl -lz -ldl -lz cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 82%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/ModelData.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/ModelData.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/ModelData.cpp @@ -2059,11 +2096,15 @@ [ 83%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartiInfo.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartiInfo.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] -make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' -[ 83%] Built target gatb-h5dump [ 83%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartitionsCommand.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartitionsCommand.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] +[ 83%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/RepartitionAlgorithm.cpp.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/RepartitionAlgorithm.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/RepartitionAlgorithm.cpp +cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] +[ 83%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp +cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, @@ -2132,12 +2173,6 @@ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<>::Count' declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ -[ 83%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/RepartitionAlgorithm.cpp.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/RepartitionAlgorithm.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/RepartitionAlgorithm.cpp -cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] -[ 83%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp -cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 84%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/system/impl/FileSystemCommon.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] @@ -2158,14 +2193,10 @@ cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 85%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadMacos.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadMacos.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/system/impl/ThreadMacos.cpp -cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 85%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/collections/impl/Bloom.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/collections/impl/Bloom.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/collections/impl/Bloom.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/system/impl/ThreadLinux.cpp: In constructor 'gatb::core::system::impl::ThreadLinux::ThreadLinux(void* (*)(void*), void*)': -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/system/impl/ThreadLinux.cpp:51:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] - 51 | int ret = pthread_attr_init ( &tattr ) ; - | ^~~ +cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 85%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/compression/DnaCoder.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/compression/DnaCoder.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/compression/DnaCoder.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] @@ -2177,12 +2208,16 @@ cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 86%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/compression/RangeCoder.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/compression/RangeCoder.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/compression/RangeCoder.cpp -[ 87%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Observer.cpp.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Observer.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/designpattern/impl/Observer.cpp -[ 87%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Command.cpp.o cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] +[ 86%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Command.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Command.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/designpattern/impl/Command.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/system/impl/ThreadLinux.cpp: In constructor 'gatb::core::system::impl::ThreadLinux::ThreadLinux(void* (*)(void*), void*)': +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/system/impl/ThreadLinux.cpp:51:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] + 51 | int ret = pthread_attr_init ( &tattr ) ; + | ^~~ +[ 87%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Observer.cpp.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Observer.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/designpattern/impl/Observer.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 87%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/api/Data.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/api/Data.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/misc/api/Data.cpp @@ -2207,10 +2242,10 @@ cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 88%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tokenizer.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tokenizer.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/misc/impl/Tokenizer.cpp +cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 89%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tool.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tool.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/misc/impl/Tool.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] -cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 89%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/XmlReader.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/XmlReader.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/misc/impl/XmlReader.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] @@ -2219,28 +2254,10 @@ cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 89%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/StorageTools.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/StorageTools.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageTools.cpp +cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 90%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_128.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_128.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization1.cpp.in_128.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] -cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] -[ 90%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_32.cpp.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_32.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization1.cpp.in_32.cpp -cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] -[ 90%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_64.cpp.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_64.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization1.cpp.in_64.cpp -cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] -[ 90%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_96.cpp.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_96.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization1.cpp.in_96.cpp -[ 90%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_128.cpp.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_128.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp -cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] -cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] -[ 91%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_32.cpp.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_32.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp -cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] -[ 91%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_64.cpp.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_64.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp -cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, @@ -2260,25 +2277,31 @@ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/math/NativeInt8.hpp:44:7: note: 'class gatb::core::tools::math::NativeInt8' declared here 44 | class NativeInt8 : private misc::ArrayData | ^~~~~~~~~~ -In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, - from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, - from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, - from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/gatb_core.hpp:48, - from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/compression/DnaCoder.hpp:25, - from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/compression/DnaCoder.cpp:21: -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::tools::math::NativeInt8; size_t = long unsigned int]': -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::tools::math::NativeInt8]' -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class gatb::core::tools::math::NativeInt8'; use assignment or value-initialization instead [-Wclass-memaccess] - 436 | memset (_data, 0, _blockSize*sizeof(Item)); - | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:45, - from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/gatb_core.hpp:48, - from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/compression/DnaCoder.hpp:25, - from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/compression/DnaCoder.cpp:21: -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/math/NativeInt8.hpp:44:7: note: 'class gatb::core::tools::math::NativeInt8' declared here - 44 | class NativeInt8 : private misc::ArrayData - | ^~~~~~~~~~ +[ 90%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_32.cpp.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_32.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization1.cpp.in_32.cpp +cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] +[ 90%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_64.cpp.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_64.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization1.cpp.in_64.cpp +[ 90%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_96.cpp.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_96.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization1.cpp.in_96.cpp +cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] +cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] +In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.cpp:20, + from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization1.cpp.in_128.cpp:5: +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp: In instantiation of 'void gatb::core::kmer::impl::Kmer::SuperKmer::save(gatb::core::tools::storage::impl::CacheSuperKmerBinFiles&, int) [with long unsigned int span = 128]': +/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization1.cpp.in_128.cpp:13:17: required from here +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1442:25: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] + 1442 | while(uid<4 && skid < superKmerLen) + | ~~~~~^~~~~~~~~~~~~~ +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1460:13: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] + 1460 | if(skid >= superKmerLen) break; + | ~~~~~^~~~~~~~~~~~~~~ +[ 90%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_128.cpp.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_128.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp +cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] +[ 91%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_32.cpp.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_32.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp +cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, @@ -2339,6 +2362,25 @@ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, + from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/gatb_core.hpp:48, + from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/compression/DnaCoder.hpp:25, + from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/compression/DnaCoder.cpp:21: +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::tools::math::NativeInt8; size_t = long unsigned int]': +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::tools::math::NativeInt8]' +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class gatb::core::tools::math::NativeInt8'; use assignment or value-initialization instead [-Wclass-memaccess] + 436 | memset (_data, 0, _blockSize*sizeof(Item)); + | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:45, + from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/gatb_core.hpp:48, + from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/compression/DnaCoder.hpp:25, + from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/compression/DnaCoder.cpp:21: +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/math/NativeInt8.hpp:44:7: note: 'class gatb::core::tools::math::NativeInt8' declared here + 44 | class NativeInt8 : private misc::ArrayData + | ^~~~~~~~~~ +In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, + from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, + from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.cpp:22: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::tools::math::NativeInt8; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::tools::math::NativeInt8]' @@ -2351,11 +2393,6 @@ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/math/NativeInt8.hpp:44:7: note: 'class gatb::core::tools::math::NativeInt8' declared here 44 | class NativeInt8 : private misc::ArrayData | ^~~~~~~~~~ -[ 91%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_96.cpp.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_96.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp -cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] -[ 91%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_128.cpp.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_128.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.cpp:20, from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization1.cpp.in_96.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp: In instantiation of 'void gatb::core::kmer::impl::Kmer::SuperKmer::save(gatb::core::tools::storage::impl::CacheSuperKmerBinFiles&, int) [with long unsigned int span = 96]': @@ -2366,7 +2403,25 @@ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1460:13: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 1460 | if(skid >= superKmerLen) break; | ~~~~~^~~~~~~~~~~~~~~ +[ 91%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_64.cpp.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_64.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp +cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] +[ 91%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_96.cpp.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_96.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] +In file included from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:3: +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/ograph.cpp: In instantiation of 'void gatb::core::debruijn::impl::graph3::debruijn() [with long unsigned int span = 32]': +/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:31:16: required from here +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/ograph.cpp:236:10: warning: unused variable 'debug_index' [-Wunused-variable] + 236 | uint debug_index = 0; + | ^~~~~~~~~~~ +In file included from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:2: +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bglue_algo.cpp: In instantiation of 'void gatb::core::debruijn::impl::determine_order_sequences(std::vector >&, const std::vector >&, int, bool) [with int SPAN = 32]': +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:1106:48: required from 'void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool) [with long unsigned int SPAN = 32; std::string = std::__cxx11::basic_string]' +/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:29:9: required from here +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:258:18: warning: unused variable 'first_index' [-Wunused-variable] + 258 | uint32_t first_index = markedSequence_index; + | ^~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.cpp:20, from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization1.cpp.in_32.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp: In instantiation of 'void gatb::core::kmer::impl::Kmer::SuperKmer::save(gatb::core::tools::storage::impl::CacheSuperKmerBinFiles&, int) [with long unsigned int span = 32]': @@ -2387,22 +2442,46 @@ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1460:13: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 1460 | if(skid >= superKmerLen) break; | ~~~~~^~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.cpp:20, - from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization1.cpp.in_128.cpp:5: -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp: In instantiation of 'void gatb::core::kmer::impl::Kmer::SuperKmer::save(gatb::core::tools::storage::impl::CacheSuperKmerBinFiles&, int) [with long unsigned int span = 128]': -/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization1.cpp.in_128.cpp:13:17: required from here -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1442:25: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] - 1442 | while(uid<4 && skid < superKmerLen) - | ~~~~~^~~~~~~~~~~~~~ -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1460:13: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] - 1460 | if(skid >= superKmerLen) break; - | ~~~~~^~~~~~~~~~~~~~~ +[ 91%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_128.cpp.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_128.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp +cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] +In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, + from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, + from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, + from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24, + from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1, + from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1: +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<32>::Count; size_t = long unsigned int]': +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<32>::Count]' +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<32>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] + 436 | memset (_data, 0, _blockSize*sizeof(Item)); + | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/ograph.h:15, + from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:5, + from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1: +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<32>::Count' declared here + 1568 | struct Count : tools::misc::Abundance + | ^~~~~ +In file included from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:3: +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/ograph.cpp: In instantiation of 'void gatb::core::debruijn::impl::graph3::debruijn() [with long unsigned int span = 64]': +/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:31:16: required from here +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/ograph.cpp:236:10: warning: unused variable 'debug_index' [-Wunused-variable] + 236 | uint debug_index = 0; + | ^~~~~~~~~~~ +In file included from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:2: +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bglue_algo.cpp: In instantiation of 'void gatb::core::debruijn::impl::determine_order_sequences(std::vector >&, const std::vector >&, int, bool) [with int SPAN = 64]': +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:1106:48: required from 'void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool) [with long unsigned int SPAN = 64; std::string = std::__cxx11::basic_string]' +/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:29:9: required from here +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:258:18: warning: unused variable 'first_index' [-Wunused-variable] + 258 | uint32_t first_index = markedSequence_index; + | ^~~~~~~~~~~ [ 92%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_32.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_32.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] -In file included from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:3: -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/ograph.cpp: In instantiation of 'void gatb::core::debruijn::impl::graph3::debruijn() [with long unsigned int span = 32]': -/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:31:16: required from here +In file included from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:3: +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/ograph.cpp: In instantiation of 'void gatb::core::debruijn::impl::graph3::debruijn() [with long unsigned int span = 96]': +/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:31:16: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/ograph.cpp:236:10: warning: unused variable 'debug_index' [-Wunused-variable] 236 | uint debug_index = 0; | ^~~~~~~~~~~ @@ -2412,6 +2491,13 @@ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/ograph.cpp:236:10: warning: unused variable 'debug_index' [-Wunused-variable] 236 | uint debug_index = 0; | ^~~~~~~~~~~ +In file included from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:2: +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bglue_algo.cpp: In instantiation of 'void gatb::core::debruijn::impl::determine_order_sequences(std::vector >&, const std::vector >&, int, bool) [with int SPAN = 96]': +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:1106:48: required from 'void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool) [with long unsigned int SPAN = 96; std::string = std::__cxx11::basic_string]' +/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:29:9: required from here +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:258:18: warning: unused variable 'first_index' [-Wunused-variable] + 258 | uint32_t first_index = markedSequence_index; + | ^~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp:6: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp: In instantiation of 'void gatb::core::kmer::impl::PartitionsByHashCommand::execute() [with long unsigned int span = 128]': /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp:14:16: required from here @@ -2430,6 +2516,13 @@ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:715:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 715 | for(int ii=0; ii< _tmpCountFileNames.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:2: +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bglue_algo.cpp: In instantiation of 'void gatb::core::debruijn::impl::determine_order_sequences(std::vector >&, const std::vector >&, int, bool) [with int SPAN = 128]': +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:1106:48: required from 'void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool) [with long unsigned int SPAN = 128; std::string = std::__cxx11::basic_string]' +/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:29:9: required from here +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:258:18: warning: unused variable 'first_index' [-Wunused-variable] + 258 | uint32_t first_index = markedSequence_index; + | ^~~~~~~~~~~ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp: In instantiation of 'std::vector > gatb::core::kmer::impl::TempCountFileMerger::mergeFiles(std::vector >) [with long unsigned int span = 128]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:556:54: required from 'void gatb::core::kmer::impl::PartitionsByHashCommand::execute() [with long unsigned int span = 128]' /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp:14:16: required from here @@ -2451,20 +2544,45 @@ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:342:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 342 | for(int ii=0; ii< currentFiles.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:2: -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bglue_algo.cpp: In instantiation of 'void gatb::core::debruijn::impl::determine_order_sequences(std::vector >&, const std::vector >&, int, bool) [with int SPAN = 32]': -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:1106:48: required from 'void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool) [with long unsigned int SPAN = 32; std::string = std::__cxx11::basic_string]' -/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:29:9: required from here -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:258:18: warning: unused variable 'first_index' [-Wunused-variable] - 258 | uint32_t first_index = markedSequence_index; - | ^~~~~~~~~~~ -In file included from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:2: -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bglue_algo.cpp: In instantiation of 'void gatb::core::debruijn::impl::determine_order_sequences(std::vector >&, const std::vector >&, int, bool) [with int SPAN = 128]': -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:1106:48: required from 'void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool) [with long unsigned int SPAN = 128; std::string = std::__cxx11::basic_string]' -/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:29:9: required from here -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:258:18: warning: unused variable 'first_index' [-Wunused-variable] - 258 | uint32_t first_index = markedSequence_index; - | ^~~~~~~~~~~ +[ 92%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_64.cpp.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_64.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp +cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] +In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, + from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, + from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, + from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24, + from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1, + from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1: +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<64>::Count; size_t = long unsigned int]': +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]' +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<64>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] + 436 | memset (_data, 0, _blockSize*sizeof(Item)); + | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/ograph.h:15, + from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:5, + from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1: +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<64>::Count' declared here + 1568 | struct Count : tools::misc::Abundance + | ^~~~~ +In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, + from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, + from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, + from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24, + from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1, + from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:1: +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<96>::Count; size_t = long unsigned int]': +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<96>::Count]' +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<96>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] + 436 | memset (_data, 0, _blockSize*sizeof(Item)); + | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/ograph.h:15, + from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:5, + from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:1: +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<96>::Count' declared here + 1568 | struct Count : tools::misc::Abundance + | ^~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/CountProcessor.hpp:27, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp:5: @@ -2479,6 +2597,27 @@ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:135:20: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 135 | for(int ii=1; ii<= _histogram->getLength(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 92%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_96.cpp.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_96.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_96.cpp +cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] +In file included from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp:6: +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp: In instantiation of 'void gatb::core::kmer::impl::PartitionsByHashCommand::execute() [with long unsigned int span = 64]': +/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp:14:16: required from here +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:563:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 563 | for(int ii=0; ii< _tmpCountFileNames.size(); ii++) + | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:587:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, short unsigned int> >*, std::allocator, short unsigned int> >*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 587 | for(int ii=0; ii< _tmpCountIterators.size(); ii++) + | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:599:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, short unsigned int> >*, std::allocator, short unsigned int> >*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 599 | for(int ii=0; ii< _tmpCountIterators.size(); ii++) + | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:708:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, short unsigned int> >*, std::allocator, short unsigned int> >*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 708 | for(int ii=0; ii< _tmpCountIterators.size(); ii++) + | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:715:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 715 | for(int ii=0; ii< _tmpCountFileNames.size(); ii++) + | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/api/ICountProcessor.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:33, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24, @@ -2492,30 +2631,57 @@ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1460:13: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 1460 | if(skid >= superKmerLen) break; | ~~~~~^~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:3: -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/ograph.cpp: In instantiation of 'void gatb::core::debruijn::impl::graph3::debruijn() [with long unsigned int span = 64]': -/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:31:16: required from here -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/ograph.cpp:236:10: warning: unused variable 'debug_index' [-Wunused-variable] - 236 | uint debug_index = 0; - | ^~~~~~~~~~~ -In file included from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp:6: -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp: In instantiation of 'void gatb::core::kmer::impl::PartitionsByHashCommand::execute() [with long unsigned int span = 32]': -/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp:14:16: required from here -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:563:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 563 | for(int ii=0; ii< _tmpCountFileNames.size(); ii++) - | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:587:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, short unsigned int> >*, std::allocator, short unsigned int> >*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 587 | for(int ii=0; ii< _tmpCountIterators.size(); ii++) - | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:599:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, short unsigned int> >*, std::allocator, short unsigned int> >*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 599 | for(int ii=0; ii< _tmpCountIterators.size(); ii++) - | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:708:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, short unsigned int> >*, std::allocator, short unsigned int> >*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 708 | for(int ii=0; ii< _tmpCountIterators.size(); ii++) - | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:715:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 715 | for(int ii=0; ii< _tmpCountFileNames.size(); ii++) - | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp: In instantiation of 'std::vector > gatb::core::kmer::impl::TempCountFileMerger::mergeFiles(std::vector >) [with long unsigned int span = 64]': +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:556:54: required from 'void gatb::core::kmer::impl::PartitionsByHashCommand::execute() [with long unsigned int span = 64]' +/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp:14:16: required from here +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:239:27: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] + 239 | while(filenames.size() > _reduceTarget) + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:257:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 257 | for(int ii=0; ii< currentFiles.size(); ii++) + | ~~^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:265:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, short unsigned int> >*, std::allocator, short unsigned int> >*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 265 | for(int ii=0; ii< _tmpCountIterators.size(); ii++) + | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:271:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, short unsigned int> >*, std::allocator, short unsigned int> >*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 271 | for(int ii=0; ii< _tmpCountIterators.size(); ii++) + | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:335:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, short unsigned int> >*, std::allocator, short unsigned int> >*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 335 | for(int ii=0; ii< _tmpCountIterators.size(); ii++) + | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:342:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 342 | for(int ii=0; ii< currentFiles.size(); ii++) + | ~~^~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/CountProcessor.hpp:27, + from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, + from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp:5: +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp: In instantiation of 'void gatb::core::kmer::impl::CountProcessorHistogram::end() [with long unsigned int span = 64]': +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:104:10: required from here +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:117:20: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] + 117 | for(int ii=0; ii<= _histogram->getLength(); ii++) + | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:120:21: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] + 120 | for(int jj=0; jj<= _histogram->getLength2(); jj++) + | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:135:20: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] + 135 | for(int ii=1; ii<= _histogram->getLength(); ii++) + | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/api/ICountProcessor.hpp:25, + from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:33, + from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24, + from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp:5: +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp: In instantiation of 'void gatb::core::kmer::impl::Kmer::SuperKmer::save(gatb::core::tools::storage::impl::CacheSuperKmerBinFiles&, int) [with long unsigned int span = 64]': +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:1057:20: required from 'void gatb::core::kmer::impl::FillPartitions::processSuperkmer(gatb::core::kmer::impl::FillPartitions::SuperKmer&) [with long unsigned int span = 64; gatb::core::kmer::impl::FillPartitions::SuperKmer = gatb::core::kmer::impl::Kmer<64>::SuperKmer]' +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:1048:8: required from here +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1442:25: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] + 1442 | while(uid<4 && skid < superKmerLen) + | ~~~~~^~~~~~~~~~~~~~ +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1460:13: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] + 1460 | if(skid >= superKmerLen) break; + | ~~~~~^~~~~~~~~~~~~~~ +[ 92%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_128.cpp.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_128.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization3.cpp.in_128.cpp +cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, @@ -2523,18 +2689,18 @@ from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/api/ICountProcessor.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:33, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24, - from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp:5: -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<128>::Count; size_t = long unsigned int]': -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]' + from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp:5: +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<64>::Count; size_t = long unsigned int]': +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<128>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<64>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/api/ICountProcessor.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:33, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24, - from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp:5: -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<128>::Count' declared here + from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp:5: +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<64>::Count' declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, @@ -2544,7 +2710,7 @@ from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/api/ICountProcessor.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:33, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24, - from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp:5: + from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::tools::math::NativeInt64; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::tools::math::NativeInt64]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here @@ -2556,10 +2722,46 @@ from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:31, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24, - from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp:5: + from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/math/NativeInt64.hpp:48:7: note: 'class gatb::core::tools::math::NativeInt64' declared here 48 | class NativeInt64 | ^~~~~~~~~~~ +In file included from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp:6: +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp: In instantiation of 'void gatb::core::kmer::impl::PartitionsByHashCommand::execute() [with long unsigned int span = 32]': +/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp:14:16: required from here +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:563:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 563 | for(int ii=0; ii< _tmpCountFileNames.size(); ii++) + | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:587:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, short unsigned int> >*, std::allocator, short unsigned int> >*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 587 | for(int ii=0; ii< _tmpCountIterators.size(); ii++) + | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:599:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, short unsigned int> >*, std::allocator, short unsigned int> >*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 599 | for(int ii=0; ii< _tmpCountIterators.size(); ii++) + | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:708:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, short unsigned int> >*, std::allocator, short unsigned int> >*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 708 | for(int ii=0; ii< _tmpCountIterators.size(); ii++) + | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:715:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 715 | for(int ii=0; ii< _tmpCountFileNames.size(); ii++) + | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, + from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, + from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, + from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24, + from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1, + from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1: +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<128>::Count; size_t = long unsigned int]': +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]' +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<128>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] + 436 | memset (_data, 0, _blockSize*sizeof(Item)); + | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/ograph.h:15, + from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:5, + from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1: +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<128>::Count' declared here + 1568 | struct Count : tools::misc::Abundance + | ^~~~~ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp: In instantiation of 'std::vector > gatb::core::kmer::impl::TempCountFileMerger::mergeFiles(std::vector >) [with long unsigned int span = 32]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:556:54: required from 'void gatb::core::kmer::impl::PartitionsByHashCommand::execute() [with long unsigned int span = 32]' /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp:14:16: required from here @@ -2584,55 +2786,50 @@ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, - from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24, - from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1, - from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1: + from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, + from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/api/ICountProcessor.hpp:25, + from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:33, + from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24, + from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<128>::Count; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<128>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/ograph.h:15, - from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:5, - from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1: +In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/api/ICountProcessor.hpp:25, + from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:33, + from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24, + from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<128>::Count' declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ -In file included from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:2: -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bglue_algo.cpp: In instantiation of 'void gatb::core::debruijn::impl::determine_order_sequences(std::vector >&, const std::vector >&, int, bool) [with int SPAN = 64]': -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:1106:48: required from 'void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool) [with long unsigned int SPAN = 64; std::string = std::__cxx11::basic_string]' -/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:29:9: required from here -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:258:18: warning: unused variable 'first_index' [-Wunused-variable] - 258 | uint32_t first_index = markedSequence_index; - | ^~~~~~~~~~~ -[ 92%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_64.cpp.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_64.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp -cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] -In file included from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:3: -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/ograph.cpp: In instantiation of 'void gatb::core::debruijn::impl::graph3::debruijn() [with long unsigned int span = 96]': -/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:31:16: required from here -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/ograph.cpp:236:10: warning: unused variable 'debug_index' [-Wunused-variable] - 236 | uint debug_index = 0; - | ^~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, - from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24, - from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1, - from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1: -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<32>::Count; size_t = long unsigned int]': -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<32>::Count]' + from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, + from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/api/ICountProcessor.hpp:25, + from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:33, + from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24, + from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp:5: +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::tools::math::NativeInt64; size_t = long unsigned int]': +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::tools::math::NativeInt64]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<32>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class gatb::core::tools::math::NativeInt64'; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/ograph.h:15, - from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:5, - from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1: -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<32>::Count' declared here - 1568 | struct Count : tools::misc::Abundance - | ^~~~~ +In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/math/LargeInt.hpp:42, + from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/math/Integer.hpp:29, + from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:37, + from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:31, + from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24, + from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp:5: +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/math/NativeInt64.hpp:48:7: note: 'class gatb::core::tools::math::NativeInt64' declared here + 48 | class NativeInt64 + | ^~~~~~~~~~~ +[ 93%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_32.cpp.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_32.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization3.cpp.in_32.cpp +cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/CountProcessor.hpp:27, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp:5: @@ -2660,34 +2857,6 @@ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1460:13: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 1460 | if(skid >= superKmerLen) break; | ~~~~~^~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:2: -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bglue_algo.cpp: In instantiation of 'void gatb::core::debruijn::impl::determine_order_sequences(std::vector >&, const std::vector >&, int, bool) [with int SPAN = 96]': -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:1106:48: required from 'void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool) [with long unsigned int SPAN = 96; std::string = std::__cxx11::basic_string]' -/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:29:9: required from here -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:258:18: warning: unused variable 'first_index' [-Wunused-variable] - 258 | uint32_t first_index = markedSequence_index; - | ^~~~~~~~~~~ -In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, - from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, - from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, - from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24, - from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1, - from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1: -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<64>::Count; size_t = long unsigned int]': -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]' -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<64>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] - 436 | memset (_data, 0, _blockSize*sizeof(Item)); - | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/ograph.h:15, - from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:5, - from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1: -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<64>::Count' declared here - 1568 | struct Count : tools::misc::Abundance - | ^~~~~ -[ 92%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_96.cpp.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_96.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_96.cpp -cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, @@ -2732,80 +2901,6 @@ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/math/NativeInt64.hpp:48:7: note: 'class gatb::core::tools::math::NativeInt64' declared here 48 | class NativeInt64 | ^~~~~~~~~~~ -In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, - from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, - from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, - from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24, - from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1, - from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:1: -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<96>::Count; size_t = long unsigned int]': -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<96>::Count]' -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<96>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] - 436 | memset (_data, 0, _blockSize*sizeof(Item)); - | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/ograph.h:15, - from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:5, - from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:1: -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<96>::Count' declared here - 1568 | struct Count : tools::misc::Abundance - | ^~~~~ -In file included from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp:6: -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp: In instantiation of 'void gatb::core::kmer::impl::PartitionsByHashCommand::execute() [with long unsigned int span = 64]': -/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp:14:16: required from here -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:563:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 563 | for(int ii=0; ii< _tmpCountFileNames.size(); ii++) - | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:587:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, short unsigned int> >*, std::allocator, short unsigned int> >*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 587 | for(int ii=0; ii< _tmpCountIterators.size(); ii++) - | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:599:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, short unsigned int> >*, std::allocator, short unsigned int> >*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 599 | for(int ii=0; ii< _tmpCountIterators.size(); ii++) - | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:708:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, short unsigned int> >*, std::allocator, short unsigned int> >*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 708 | for(int ii=0; ii< _tmpCountIterators.size(); ii++) - | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:715:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 715 | for(int ii=0; ii< _tmpCountFileNames.size(); ii++) - | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp: In instantiation of 'std::vector > gatb::core::kmer::impl::TempCountFileMerger::mergeFiles(std::vector >) [with long unsigned int span = 64]': -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:556:54: required from 'void gatb::core::kmer::impl::PartitionsByHashCommand::execute() [with long unsigned int span = 64]' -/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp:14:16: required from here -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:239:27: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] - 239 | while(filenames.size() > _reduceTarget) - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:257:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 257 | for(int ii=0; ii< currentFiles.size(); ii++) - | ~~^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:265:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, short unsigned int> >*, std::allocator, short unsigned int> >*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 265 | for(int ii=0; ii< _tmpCountIterators.size(); ii++) - | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:271:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, short unsigned int> >*, std::allocator, short unsigned int> >*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 271 | for(int ii=0; ii< _tmpCountIterators.size(); ii++) - | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:335:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, short unsigned int> >*, std::allocator, short unsigned int> >*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 335 | for(int ii=0; ii< _tmpCountIterators.size(); ii++) - | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:342:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 342 | for(int ii=0; ii< currentFiles.size(); ii++) - | ~~^~~~~~~~~~~~~~~~~~~~~ -[ 92%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_128.cpp.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_128.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization3.cpp.in_128.cpp -In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/CountProcessor.hpp:27, - from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, - from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp:5: -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp: In instantiation of 'void gatb::core::kmer::impl::CountProcessorHistogram::end() [with long unsigned int span = 64]': -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:104:10: required from here -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:117:20: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] - 117 | for(int ii=0; ii<= _histogram->getLength(); ii++) - | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:120:21: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] - 120 | for(int jj=0; jj<= _histogram->getLength2(); jj++) - | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:135:20: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] - 135 | for(int ii=1; ii<= _histogram->getLength(); ii++) - | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ -cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] In file included from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_96.cpp:6: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp: In instantiation of 'void gatb::core::kmer::impl::PartitionsByHashCommand::execute() [with long unsigned int span = 96]': /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_96.cpp:14:16: required from here @@ -2818,27 +2913,14 @@ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:599:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, short unsigned int> >*, std::allocator, short unsigned int> >*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 599 | for(int ii=0; ii< _tmpCountIterators.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/api/ICountProcessor.hpp:25, - from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:33, - from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24, - from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp:5: -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp: In instantiation of 'void gatb::core::kmer::impl::Kmer::SuperKmer::save(gatb::core::tools::storage::impl::CacheSuperKmerBinFiles&, int) [with long unsigned int span = 64]': -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:1057:20: required from 'void gatb::core::kmer::impl::FillPartitions::processSuperkmer(gatb::core::kmer::impl::FillPartitions::SuperKmer&) [with long unsigned int span = 64; gatb::core::kmer::impl::FillPartitions::SuperKmer = gatb::core::kmer::impl::Kmer<64>::SuperKmer]' -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:1048:8: required from here -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1442:25: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] - 1442 | while(uid<4 && skid < superKmerLen) - | ~~~~~^~~~~~~~~~~~~~ -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1460:13: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] - 1460 | if(skid >= superKmerLen) break; - | ~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:708:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, short unsigned int> >*, std::allocator, short unsigned int> >*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 708 | for(int ii=0; ii< _tmpCountIterators.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:715:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 715 | for(int ii=0; ii< _tmpCountFileNames.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 93%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_32.cpp.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_32.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization3.cpp.in_32.cpp +[ 93%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_64.cpp.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_64.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization3.cpp.in_64.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp: In instantiation of 'std::vector > gatb::core::kmer::impl::TempCountFileMerger::mergeFiles(std::vector >) [with long unsigned int span = 96]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:556:54: required from 'void gatb::core::kmer::impl::PartitionsByHashCommand::execute() [with long unsigned int span = 96]' @@ -2861,56 +2943,6 @@ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:342:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 342 | for(int ii=0; ii< currentFiles.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~ -[ 93%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_64.cpp.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_64.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization3.cpp.in_64.cpp -cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] -[ 93%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_96.cpp.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_96.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization3.cpp.in_96.cpp -In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, - from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, - from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, - from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, - from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/api/ICountProcessor.hpp:25, - from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:33, - from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24, - from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp:5: -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<64>::Count; size_t = long unsigned int]': -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]' -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<64>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] - 436 | memset (_data, 0, _blockSize*sizeof(Item)); - | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/api/ICountProcessor.hpp:25, - from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:33, - from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24, - from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp:5: -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<64>::Count' declared here - 1568 | struct Count : tools::misc::Abundance - | ^~~~~ -In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, - from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, - from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, - from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, - from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/api/ICountProcessor.hpp:25, - from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:33, - from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24, - from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp:5: -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::tools::math::NativeInt64; size_t = long unsigned int]': -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::tools::math::NativeInt64]' -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class gatb::core::tools::math::NativeInt64'; use assignment or value-initialization instead [-Wclass-memaccess] - 436 | memset (_data, 0, _blockSize*sizeof(Item)); - | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/math/LargeInt.hpp:42, - from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/math/Integer.hpp:29, - from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:37, - from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:31, - from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24, - from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp:5: -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/math/NativeInt64.hpp:48:7: note: 'class gatb::core::tools::math::NativeInt64' declared here - 48 | class NativeInt64 - | ^~~~~~~~~~~ -cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/CountProcessor.hpp:27, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_96.cpp:5: @@ -2942,6 +2974,30 @@ from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, + from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.hpp:33, + from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp:20, + from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization3.cpp.in_128.cpp:5: +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::tools::math::NativeInt8; size_t = long unsigned int]': +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::tools::math::NativeInt8]' +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class gatb::core::tools::math::NativeInt8'; use assignment or value-initialization instead [-Wclass-memaccess] + 436 | memset (_data, 0, _blockSize*sizeof(Item)); + | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:45, + from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, + from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.hpp:33, + from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp:20, + from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization3.cpp.in_128.cpp:5: +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/math/NativeInt8.hpp:44:7: note: 'class gatb::core::tools::math::NativeInt8' declared here + 44 | class NativeInt8 : private misc::ArrayData + | ^~~~~~~~~~ +[ 93%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_96.cpp.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_96.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization3.cpp.in_96.cpp +cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] +In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, + from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, + from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, + from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/api/ICountProcessor.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:33, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24, @@ -2982,40 +3038,13 @@ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/math/NativeInt64.hpp:48:7: note: 'class gatb::core::tools::math::NativeInt64' declared here 48 | class NativeInt64 | ^~~~~~~~~~~ -[ 93%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_128.cpp.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_128.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization4.cpp.in_128.cpp -cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] -[ 93%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_32.cpp.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_32.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization4.cpp.in_32.cpp -cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.hpp:33, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp:20, - from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization3.cpp.in_32.cpp:5: -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::tools::math::NativeInt8; size_t = long unsigned int]': -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::tools::math::NativeInt8]' -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class gatb::core::tools::math::NativeInt8'; use assignment or value-initialization instead [-Wclass-memaccess] - 436 | memset (_data, 0, _blockSize*sizeof(Item)); - | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:45, - from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, - from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.hpp:33, - from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp:20, - from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization3.cpp.in_32.cpp:5: -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/math/NativeInt8.hpp:44:7: note: 'class gatb::core::tools::math::NativeInt8' declared here - 44 | class NativeInt8 : private misc::ArrayData - | ^~~~~~~~~~ -In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, - from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, - from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, - from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, - from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.hpp:33, - from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp:20, - from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization3.cpp.in_128.cpp:5: + from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization3.cpp.in_64.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::tools::math::NativeInt8; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::tools::math::NativeInt8]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here @@ -3026,17 +3055,20 @@ from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.hpp:33, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp:20, - from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization3.cpp.in_128.cpp:5: + from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization3.cpp.in_64.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/math/NativeInt8.hpp:44:7: note: 'class gatb::core::tools::math::NativeInt8' declared here 44 | class NativeInt8 : private misc::ArrayData | ^~~~~~~~~~ +[ 93%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_128.cpp.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_128.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization4.cpp.in_128.cpp +cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.hpp:33, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp:20, - from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization3.cpp.in_64.cpp:5: + from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization3.cpp.in_32.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::tools::math::NativeInt8; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::tools::math::NativeInt8]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here @@ -3047,7 +3079,7 @@ from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.hpp:33, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp:20, - from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization3.cpp.in_64.cpp:5: + from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization3.cpp.in_32.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/math/NativeInt8.hpp:44:7: note: 'class gatb::core::tools::math::NativeInt8' declared here 44 | class NativeInt8 : private misc::ArrayData | ^~~~~~~~~~ @@ -3057,12 +3089,6 @@ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:311:21: warning: unused variable 'abundance' [-Wunused-variable] 311 | Abundance_t abundance = (*_abundanceMap)[count.value]; | ^~~~~~~~~ -In file included from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization4.cpp.in_32.cpp:6: -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp: In instantiation of 'void gatb::core::kmer::impl::MPHFAlgorithm::check() [with long unsigned int span = 32; Abundance_t = unsigned char; NodeState_t = unsigned char]': -/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization4.cpp.in_32.cpp:13:16: required from here -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:311:21: warning: unused variable 'abundance' [-Wunused-variable] - 311 | Abundance_t abundance = (*_abundanceMap)[count.value]; - | ^~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, @@ -3084,24 +3110,27 @@ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/math/NativeInt8.hpp:44:7: note: 'class gatb::core::tools::math::NativeInt8' declared here 44 | class NativeInt8 : private misc::ArrayData | ^~~~~~~~~~ +[ 93%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_32.cpp.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_32.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization4.cpp.in_32.cpp +cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 94%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_64.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_64.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization4.cpp.in_64.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] -[ 94%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_96.cpp.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_96.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization4.cpp.in_96.cpp -cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] -In file included from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization4.cpp.in_64.cpp:6: -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp: In instantiation of 'void gatb::core::kmer::impl::MPHFAlgorithm::check() [with long unsigned int span = 64; Abundance_t = unsigned char; NodeState_t = unsigned char]': -/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization4.cpp.in_64.cpp:13:16: required from here +In file included from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization4.cpp.in_32.cpp:6: +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp: In instantiation of 'void gatb::core::kmer::impl::MPHFAlgorithm::check() [with long unsigned int span = 32; Abundance_t = unsigned char; NodeState_t = unsigned char]': +/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization4.cpp.in_32.cpp:13:16: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:311:21: warning: unused variable 'abundance' [-Wunused-variable] 311 | Abundance_t abundance = (*_abundanceMap)[count.value]; | ^~~~~~~~~ -In file included from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization4.cpp.in_96.cpp:6: -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp: In instantiation of 'void gatb::core::kmer::impl::MPHFAlgorithm::check() [with long unsigned int span = 96; Abundance_t = unsigned char; NodeState_t = unsigned char]': -/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization4.cpp.in_96.cpp:13:16: required from here +In file included from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization4.cpp.in_64.cpp:6: +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp: In instantiation of 'void gatb::core::kmer::impl::MPHFAlgorithm::check() [with long unsigned int span = 64; Abundance_t = unsigned char; NodeState_t = unsigned char]': +/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization4.cpp.in_64.cpp:13:16: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:311:21: warning: unused variable 'abundance' [-Wunused-variable] 311 | Abundance_t abundance = (*_abundanceMap)[count.value]; | ^~~~~~~~~ +[ 94%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_96.cpp.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_96.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization4.cpp.in_96.cpp +cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 94%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_128.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_128.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_128.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] @@ -3114,12 +3143,6 @@ [ 95%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_96.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_96.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_96.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] -[ 95%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_128.cpp.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_128.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization6.cpp.in_128.cpp -cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] -[ 95%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_32.cpp.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_32.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization6.cpp.in_32.cpp -cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, @@ -3204,6 +3227,18 @@ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<128>::Count' declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ +[ 95%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_128.cpp.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_128.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization6.cpp.in_128.cpp +cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] +In file included from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization4.cpp.in_96.cpp:6: +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp: In instantiation of 'void gatb::core::kmer::impl::MPHFAlgorithm::check() [with long unsigned int span = 96; Abundance_t = unsigned char; NodeState_t = unsigned char]': +/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization4.cpp.in_96.cpp:13:16: required from here +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:311:21: warning: unused variable 'abundance' [-Wunused-variable] + 311 | Abundance_t abundance = (*_abundanceMap)[count.value]; + | ^~~~~~~~~ +[ 95%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_32.cpp.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_32.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization6.cpp.in_32.cpp +cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 95%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_64.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_64.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization6.cpp.in_64.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] @@ -3217,7 +3252,7 @@ from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, - from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_32.cpp:5: + from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_64.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<128>::Count; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here @@ -3227,7 +3262,7 @@ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, - from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_32.cpp:5: + from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_64.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<128>::Count' declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ @@ -3238,7 +3273,7 @@ from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, - from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_32.cpp:5: + from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_64.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<96>::Count; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<96>::Count]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here @@ -3248,7 +3283,7 @@ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, - from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_32.cpp:5: + from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_64.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<96>::Count' declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ @@ -3259,18 +3294,18 @@ from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, - from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_32.cpp:5: -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<64>::Count; size_t = long unsigned int]': -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]' + from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_64.cpp:5: +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<>::Count; size_t = long unsigned int]': +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<>::Count]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<64>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, - from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_32.cpp:5: -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<64>::Count' declared here + from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_64.cpp:5: +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<>::Count' declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, @@ -3280,23 +3315,29 @@ from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, - from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_32.cpp:5: -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<>::Count; size_t = long unsigned int]': -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<>::Count]' + from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_64.cpp:5: +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<64>::Count; size_t = long unsigned int]': +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<64>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, - from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_32.cpp:5: -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<>::Count' declared here + from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_64.cpp:5: +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<64>::Count' declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ [ 96%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_128.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_128.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_128.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] +[ 96%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_32.cpp.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_32.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_32.cpp +cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] +[ 96%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_64.cpp.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_64.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_64.cpp +cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, @@ -3304,7 +3345,7 @@ from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, - from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_64.cpp:5: + from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_32.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<128>::Count; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here @@ -3314,7 +3355,7 @@ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, - from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_64.cpp:5: + from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_32.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<128>::Count' declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ @@ -3325,7 +3366,7 @@ from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, - from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_64.cpp:5: + from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_32.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<96>::Count; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<96>::Count]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here @@ -3335,7 +3376,7 @@ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, - from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_64.cpp:5: + from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_32.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<96>::Count' declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ @@ -3346,18 +3387,18 @@ from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, - from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_64.cpp:5: -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<>::Count; size_t = long unsigned int]': -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<>::Count]' + from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_32.cpp:5: +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<64>::Count; size_t = long unsigned int]': +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<64>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, - from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_64.cpp:5: -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<>::Count' declared here + from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_32.cpp:5: +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<64>::Count' declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, @@ -3367,22 +3408,22 @@ from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, - from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_64.cpp:5: -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<64>::Count; size_t = long unsigned int]': -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]' + from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_32.cpp:5: +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<>::Count; size_t = long unsigned int]': +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<>::Count]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<64>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, - from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_64.cpp:5: -/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<64>::Count' declared here + from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_32.cpp:5: +/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<>::Count' declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ -[ 96%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_32.cpp.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_32.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_32.cpp +[ 97%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_96.cpp.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_96.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_96.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, @@ -3468,21 +3509,9 @@ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<96>::Count' declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ -[ 96%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_64.cpp.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_64.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_64.cpp -cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] -[ 97%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_96.cpp.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_96.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_96.cpp -cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 97%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_128.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_128.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization8.cpp.in_128.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] -[ 97%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_32.cpp.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_32.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization8.cpp.in_32.cpp -cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] -[ 97%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization8.cpp.in_64.cpp -cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, @@ -3490,7 +3519,7 @@ from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, - from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_128.cpp:1: + from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_96.cpp:1: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<128>::Count; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here @@ -3500,7 +3529,7 @@ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, - from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_128.cpp:1: + from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_96.cpp:1: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<128>::Count' declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ @@ -3511,7 +3540,7 @@ from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, - from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_128.cpp:1: + from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_96.cpp:1: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<96>::Count; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<96>::Count]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here @@ -3521,7 +3550,7 @@ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, - from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_128.cpp:1: + from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_96.cpp:1: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<96>::Count' declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ @@ -3532,7 +3561,7 @@ from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, - from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_128.cpp:1: + from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_96.cpp:1: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<64>::Count; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here @@ -3542,7 +3571,7 @@ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, - from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_128.cpp:1: + from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_96.cpp:1: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<64>::Count' declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ @@ -3553,7 +3582,7 @@ from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, - from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_128.cpp:1: + from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_96.cpp:1: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<>::Count; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<>::Count]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here @@ -3563,7 +3592,7 @@ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, - from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_128.cpp:1: + from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_96.cpp:1: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<>::Count' declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ @@ -3651,9 +3680,6 @@ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<>::Count' declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ -[ 98%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization8.cpp.in_96.cpp -cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, @@ -3661,7 +3687,7 @@ from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, - from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_96.cpp:1: + from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_64.cpp:1: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<128>::Count; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here @@ -3671,7 +3697,7 @@ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, - from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_96.cpp:1: + from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_64.cpp:1: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<128>::Count' declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ @@ -3682,7 +3708,7 @@ from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, - from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_96.cpp:1: + from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_64.cpp:1: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<96>::Count; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<96>::Count]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here @@ -3692,7 +3718,7 @@ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, - from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_96.cpp:1: + from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_64.cpp:1: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<96>::Count' declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ @@ -3703,7 +3729,7 @@ from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, - from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_96.cpp:1: + from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_64.cpp:1: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<64>::Count; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here @@ -3713,7 +3739,7 @@ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, - from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_96.cpp:1: + from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_64.cpp:1: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<64>::Count' declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ @@ -3724,7 +3750,7 @@ from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, - from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_96.cpp:1: + from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_64.cpp:1: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<>::Count; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<>::Count]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here @@ -3734,21 +3760,18 @@ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, - from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_96.cpp:1: + from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_64.cpp:1: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<>::Count' declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ -[ 98%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_128.cpp.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_128.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization9.cpp.in_128.cpp -cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] -[ 98%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization9.cpp.in_32.cpp +[ 97%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_32.cpp.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_32.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization8.cpp.in_32.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] -[ 98%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization9.cpp.in_64.cpp -[ 98%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization9.cpp.in_96.cpp +[ 97%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization8.cpp.in_64.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] +[ 98%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization8.cpp.in_96.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, @@ -3757,7 +3780,7 @@ from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, - from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_64.cpp:1: + from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_128.cpp:1: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<128>::Count; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here @@ -3767,7 +3790,7 @@ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, - from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_64.cpp:1: + from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_128.cpp:1: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<128>::Count' declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ @@ -3778,7 +3801,7 @@ from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, - from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_64.cpp:1: + from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_128.cpp:1: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<96>::Count; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<96>::Count]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here @@ -3788,7 +3811,7 @@ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, - from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_64.cpp:1: + from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_128.cpp:1: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<96>::Count' declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ @@ -3799,7 +3822,7 @@ from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, - from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_64.cpp:1: + from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_128.cpp:1: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<64>::Count; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here @@ -3809,7 +3832,7 @@ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, - from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_64.cpp:1: + from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_128.cpp:1: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<64>::Count' declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ @@ -3820,7 +3843,7 @@ from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, - from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_64.cpp:1: + from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_128.cpp:1: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<>::Count; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<>::Count]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here @@ -3830,10 +3853,22 @@ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, - from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_64.cpp:1: + from /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_128.cpp:1: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<>::Count' declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ +[ 98%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_128.cpp.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_128.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization9.cpp.in_128.cpp +cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] +[ 98%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization9.cpp.in_32.cpp +cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] +[ 98%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization9.cpp.in_64.cpp +cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] +[ 98%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization9.cpp.in_96.cpp +cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 99%] Linking CXX static library ../lib/None/libgatbcore.a cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/cmake -P CMakeFiles/gatbcore-static.dir/cmake_clean_target.cmake cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/gatbcore-static.dir/link.txt --verbose=1 @@ -3865,10 +3900,10 @@ /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' dh_auto_test - cd obj-x86_64-linux-gnu && make -j16 test ARGS\+=-j16 + cd obj-x86_64-linux-gnu && make -j15 test ARGS\+=-j15 make[1]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' Running tests... -/usr/bin/ctest --force-new-ctest-process -j16 +/usr/bin/ctest --force-new-ctest-process -j15 Test project /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu Start 1: KisspliceBasicTest Start 2: KisspliceDBGTest @@ -3878,18 +3913,18 @@ Start 6: ksBubbleEnumerationTest Start 7: ksRunModulesTest Start 8: ksErrorRemovalTest -1/8 Test #1: KisspliceBasicTest ............... Passed 0.14 sec -2/8 Test #6: ksBubbleEnumerationTest .......... Passed 0.18 sec -3/8 Test #8: ksErrorRemovalTest ............... Passed 0.19 sec -4/8 Test #7: ksRunModulesTest ................. Passed 0.25 sec -5/8 Test #5: KisspliceGraphTest ............... Passed 5.24 sec -6/8 Test #4: KisspliceGraphAndSequenceTest .... Passed 6.50 sec -7/8 Test #3: KisspliceTwoSequencesTest ........ Passed 17.02 sec -8/8 Test #2: KisspliceDBGTest ................. Passed 18.42 sec +1/8 Test #6: ksBubbleEnumerationTest .......... Passed 0.42 sec +2/8 Test #8: ksErrorRemovalTest ............... Passed 0.46 sec +3/8 Test #1: KisspliceBasicTest ............... Passed 0.69 sec +4/8 Test #7: ksRunModulesTest ................. Passed 0.69 sec +5/8 Test #5: KisspliceGraphTest ............... Passed 6.57 sec +6/8 Test #4: KisspliceGraphAndSequenceTest .... Passed 11.95 sec +7/8 Test #3: KisspliceTwoSequencesTest ........ Passed 32.09 sec +8/8 Test #2: KisspliceDBGTest ................. Passed 35.37 sec 100% tests passed, 0 tests failed out of 8 -Total Test time (real) = 18.43 sec +Total Test time (real) = 35.40 sec make[1]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' create-stamp debian/debhelper-build-stamp dh_prep @@ -3897,124 +3932,124 @@ make[1]: Entering directory '/build/reproducible-path/kissplice-2.5.3' touch bcalm/README.md dh_auto_install - cd obj-x86_64-linux-gnu && make -j16 install DESTDIR=/build/reproducible-path/kissplice-2.5.3/debian/kissplice AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-x86_64-linux-gnu && make -j15 install DESTDIR=/build/reproducible-path/kissplice-2.5.3/debian/kissplice AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/kissplice-2.5.3 -B/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' make -f bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5detect.dir/build.make bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5detect.dir/depend -make[4]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' make -f bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5make_libsettings.dir/build.make bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5make_libsettings.dir/depend +make[4]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kissplice-2.5.3 /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5detect.dir/DependInfo.cmake --color= +make -f bcalm/ext/gatb-core/thirdparty/CMakeFiles/hdf5_postbuild.dir/build.make bcalm/ext/gatb-core/thirdparty/CMakeFiles/hdf5_postbuild.dir/depend +make -f bcalm/ext/gatb-core/thirdparty/CMakeFiles/thirdparty_copy.dir/build.make bcalm/ext/gatb-core/thirdparty/CMakeFiles/thirdparty_copy.dir/depend +make -f thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/build.make thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/depend +make -f thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/build.make thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/depend +make -f modules/CMakeFiles/ks_clean_duplicates.dir/build.make modules/CMakeFiles/ks_clean_duplicates.dir/depend make[4]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kissplice-2.5.3 /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5make_libsettings.dir/DependInfo.cmake --color= -make -f bcalm/ext/gatb-core/thirdparty/CMakeFiles/hdf5_postbuild.dir/build.make bcalm/ext/gatb-core/thirdparty/CMakeFiles/hdf5_postbuild.dir/depend make[4]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' -make -f bcalm/ext/gatb-core/thirdparty/CMakeFiles/thirdparty_copy.dir/build.make bcalm/ext/gatb-core/thirdparty/CMakeFiles/thirdparty_copy.dir/depend +make[4]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kissplice-2.5.3 /build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/src /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/DependInfo.cmake --color= cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kissplice-2.5.3 /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/CMakeFiles/hdf5_postbuild.dir/DependInfo.cmake --color= +make -f modules/CMakeFiles/ks_bubble_enumeration.dir/build.make modules/CMakeFiles/ks_bubble_enumeration.dir/depend +make -f modules/CMakeFiles/ks_run_modules.dir/build.make modules/CMakeFiles/ks_run_modules.dir/depend make[4]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' -make -f thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/build.make thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/depend cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kissplice-2.5.3 /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/CMakeFiles/thirdparty_copy.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' -make -f thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/build.make thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/depend cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kissplice-2.5.3 /build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/src /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' -make -f modules/CMakeFiles/ks_clean_duplicates.dir/build.make modules/CMakeFiles/ks_clean_duplicates.dir/depend -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kissplice-2.5.3 /build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/src /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kissplice-2.5.3 /build/reproducible-path/kissplice-2.5.3/modules /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules/CMakeFiles/ks_clean_duplicates.dir/DependInfo.cmake --color= -make -f modules/CMakeFiles/ks_bubble_enumeration.dir/build.make modules/CMakeFiles/ks_bubble_enumeration.dir/depend -make[4]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' +make -f modules/CMakeFiles/ks_error_removal.dir/build.make modules/CMakeFiles/ks_error_removal.dir/depend make[4]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' -make -f bcalm/ext/gatb-core/thirdparty/CMakeFiles/hdf5_postbuild.dir/build.make bcalm/ext/gatb-core/thirdparty/CMakeFiles/hdf5_postbuild.dir/build cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kissplice-2.5.3 /build/reproducible-path/kissplice-2.5.3/modules /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules/CMakeFiles/ks_bubble_enumeration.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' -make -f modules/CMakeFiles/ks_run_modules.dir/build.make modules/CMakeFiles/ks_run_modules.dir/depend make[4]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E make_directory /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 make[4]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kissplice-2.5.3 /build/reproducible-path/kissplice-2.5.3/modules /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules/CMakeFiles/ks_run_modules.dir/DependInfo.cmake --color= -make[4]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' -make -f bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5detect.dir/build.make bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5detect.dir/build -make[4]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' -make[4]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' +make -f bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5make_libsettings.dir/build.make bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5make_libsettings.dir/build make[4]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5detect.dir/build'. +make[4]: Nothing to be done for 'bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5make_libsettings.dir/build'. make[4]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' -make -f bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5make_libsettings.dir/build.make bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5make_libsettings.dir/build +make[4]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kissplice-2.5.3 /build/reproducible-path/kissplice-2.5.3/modules /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules/CMakeFiles/ks_error_removal.dir/DependInfo.cmake --color= +make -f modules/CMakeFiles/ks_print_bcc.dir/build.make modules/CMakeFiles/ks_print_bcc.dir/depend +make[4]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kissplice-2.5.3 /build/reproducible-path/kissplice-2.5.3/modules /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules/CMakeFiles/ks_print_bcc.dir/DependInfo.cmake --color= +[ 0%] Built target H5make_libsettings make[4]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' +make -f modules/CMakeFiles/ks_run_modules.dir/build.make modules/CMakeFiles/ks_run_modules.dir/build make[4]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' +make -f thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/build.make thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/build make[4]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' -make -f bcalm/ext/gatb-core/thirdparty/CMakeFiles/thirdparty_copy.dir/build.make bcalm/ext/gatb-core/thirdparty/CMakeFiles/thirdparty_copy.dir/build -make[4]: Nothing to be done for 'bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5make_libsettings.dir/build'. +make[4]: Nothing to be done for 'thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/build'. make[4]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E make_directory /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/json -make -f thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/build.make thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/build +make[4]: Nothing to be done for 'modules/CMakeFiles/ks_run_modules.dir/build'. +make[4]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' +make -f bcalm/ext/gatb-core/thirdparty/CMakeFiles/hdf5_postbuild.dir/build.make bcalm/ext/gatb-core/thirdparty/CMakeFiles/hdf5_postbuild.dir/build +[ 2%] Built target ks_kissreadsSplice make[4]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/build'. +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E make_directory /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 make[4]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' make -f thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/build.make thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/build -make[4]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' -make -f modules/CMakeFiles/ks_clean_duplicates.dir/build.make modules/CMakeFiles/ks_clean_duplicates.dir/build make[4]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/build'. +make -f bcalm/ext/gatb-core/thirdparty/CMakeFiles/thirdparty_copy.dir/build.make bcalm/ext/gatb-core/thirdparty/CMakeFiles/thirdparty_copy.dir/build make[4]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' -make -f modules/CMakeFiles/ks_bubble_enumeration.dir/build.make modules/CMakeFiles/ks_bubble_enumeration.dir/build -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5ACpkg.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 +[ 5%] Built target ks_run_modules +make -f modules/CMakeFiles/ks_clean_duplicates.dir/build.make modules/CMakeFiles/ks_clean_duplicates.dir/build make[4]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/CMakeFiles/ks_clean_duplicates.dir/build'. make[4]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' -make[4]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'modules/CMakeFiles/ks_bubble_enumeration.dir/build'. make[4]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' -make -f modules/CMakeFiles/ks_run_modules.dir/build.make modules/CMakeFiles/ks_run_modules.dir/build +make -f bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5detect.dir/build.make bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5detect.dir/build make[4]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'modules/CMakeFiles/ks_run_modules.dir/build'. -make[4]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5ACprivate.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E make_directory /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/BooPHF -[ 2%] Built target ks_kissreadsSplice -[ 2%] Built target H5detect -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/BooPHF/BooPHF.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/BooPHF/ -[ 2%] Built target H5make_libsettings -make -f modules/CMakeFiles/ks_error_removal.dir/build.make modules/CMakeFiles/ks_error_removal.dir/depend -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5ACpublic.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 -[ 5%] Built target ks_kissreadsSNPS -make -f modules/CMakeFiles/ks_print_bcc.dir/build.make modules/CMakeFiles/ks_print_bcc.dir/depend +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E make_directory /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/json make[4]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kissplice-2.5.3 /build/reproducible-path/kissplice-2.5.3/modules /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules/CMakeFiles/ks_error_removal.dir/DependInfo.cmake --color= -[ 8%] Built target ks_clean_duplicates -[ 10%] Built target ks_bubble_enumeration -make -f bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/build.make bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/depend +make[4]: Nothing to be done for 'thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/build'. +make[4]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kissplice-2.5.3 /build/reproducible-path/kissplice-2.5.3/modules /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/modules/CMakeFiles/ks_print_bcc.dir/DependInfo.cmake --color= -[ 13%] Built target ks_run_modules -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/json/json.hpp /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/json/ +make[4]: Nothing to be done for 'bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5detect.dir/build'. +make[4]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' +make[4]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' +make -f modules/CMakeFiles/ks_bubble_enumeration.dir/build.make modules/CMakeFiles/ks_bubble_enumeration.dir/build make[4]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E make_directory /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/BooPHF make -f modules/CMakeFiles/ks_error_removal.dir/build.make modules/CMakeFiles/ks_error_removal.dir/build make[4]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Apkg.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 make[4]: Nothing to be done for 'modules/CMakeFiles/ks_error_removal.dir/build'. make[4]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' +make[4]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' +make[4]: Nothing to be done for 'modules/CMakeFiles/ks_bubble_enumeration.dir/build'. +make[4]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' make -f modules/CMakeFiles/ks_print_bcc.dir/build.make modules/CMakeFiles/ks_print_bcc.dir/build +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/BooPHF/BooPHF.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/BooPHF/ make[4]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/CMakeFiles/ks_print_bcc.dir/build'. make[4]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Aprivate.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/json/json.hpp /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/json/ +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5ACpkg.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 make[4]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' +[ 8%] Built target ks_clean_duplicates +[ 8%] Built target thirdparty_copy +[ 8%] Built target H5detect +[ 11%] Built target ks_kissreadsSNPS +make -f bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/build.make bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/depend +[ 13%] Built target ks_bubble_enumeration [ 14%] Built target ks_error_removal [ 15%] Built target ks_print_bcc +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5ACprivate.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5ACpublic.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Apkg.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 make[4]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kissplice-2.5.3 /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/DependInfo.cmake --color= +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Aprivate.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Apublic.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 -[ 15%] Built target thirdparty_copy -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5B2pkg.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 make[4]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' make -f bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/build.make bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/build +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5B2pkg.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5B2private.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5B2public.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Bpkg.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 @@ -4022,9 +4057,9 @@ make[4]: Nothing to be done for 'bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/build'. make[4]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Bprivate.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Bpublic.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 [ 71%] Built target hdf5 make -f bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib/CMakeFiles/hdf5_tools.dir/build.make bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib/CMakeFiles/hdf5_tools.dir/depend -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Bpublic.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 make[4]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kissplice-2.5.3 /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib/CMakeFiles/hdf5_tools.dir/DependInfo.cmake --color= cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5CSprivate.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 @@ -4033,14 +4068,14 @@ make[4]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib/CMakeFiles/hdf5_tools.dir/build'. make[4]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Cpkg.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 [ 74%] Built target hdf5_tools make -f bcalm/ext/gatb-core/thirdparty/hdf5/tools/h5dump/CMakeFiles/gatb-h5dump.dir/build.make bcalm/ext/gatb-core/thirdparty/hdf5/tools/h5dump/CMakeFiles/gatb-h5dump.dir/depend make[4]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kissplice-2.5.3 /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/h5dump /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/h5dump /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/h5dump/CMakeFiles/gatb-h5dump.dir/DependInfo.cmake --color= -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Cpkg.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 +cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Cprivate.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 make[4]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' make -f bcalm/ext/gatb-core/thirdparty/hdf5/tools/h5dump/CMakeFiles/gatb-h5dump.dir/build.make bcalm/ext/gatb-core/thirdparty/hdf5/tools/h5dump/CMakeFiles/gatb-h5dump.dir/build -cd /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Cprivate.h /build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 make[4]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'bcalm/ext/gatb-core/thirdparty/hdf5/tools/h5dump/CMakeFiles/gatb-h5dump.dir/build'. make[4]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-x86_64-linux-gnu' @@ -4304,12 +4339,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2231188/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2231188/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/491259 and its subdirectories -I: Current time: Sun Feb 9 14:53:32 -12 2025 -I: pbuilder-time-stamp: 1739156012 +I: removing directory /srv/workspace/pbuilder/2231188 and its subdirectories +I: Current time: Tue Jan 9 11:21:01 +14 2024 +I: pbuilder-time-stamp: 1704748861