Diff of the two buildlogs: -- --- b1/build.log 2021-11-05 13:56:26.643978885 +0000 +++ b2/build.log 2021-11-05 14:07:10.138074824 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Dec 8 08:13:26 -12 2022 -I: pbuilder-time-stamp: 1670530406 +I: Current time: Sat Nov 6 03:56:30 +14 2021 +I: pbuilder-time-stamp: 1636120590 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -16,8 +16,8 @@ I: copying [./freecontact_1.0.21-9.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.YenaNtWC/trustedkeys.kbx': General error -gpgv: Signature made Wed Apr 7 03:19:52 2021 -12 +gpgv: keyblock resource '/tmp/dpkg-verify-sig.sJWaxr6s/trustedkeys.kbx': General error +gpgv: Signature made Thu Apr 8 05:19:52 2021 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -27,135 +27,169 @@ dpkg-source: info: unpacking freecontact_1.0.21-9.debian.tar.xz I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2840159/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3209087/tmp/hooks/D01_modify_environment starting +debug: Running on ionos11-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3209087/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3209087/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=16' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=15' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='cbc772bc52314c3fab12be45f324a80e' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2840159' - PS1='# ' - PS2='> ' + INVOCATION_ID=3cc6c7bf3c6a487abcdc00eb17a29b73 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3209087 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.cNSf6BRqEP/pbuilderrc_0KP5 --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.cNSf6BRqEP/b1 --logfile b1/build.log freecontact_1.0.21-9.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://85.184.249.68:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.cNSf6BRqEP/pbuilderrc_41HQ --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.cNSf6BRqEP/b2 --logfile b2/build.log freecontact_1.0.21-9.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://78.137.99.97:3128 I: uname -a - Linux ionos15-amd64 5.14.0-0.bpo.2-amd64 #1 SMP Debian 5.14.9-2~bpo11+1 (2021-10-10) x86_64 GNU/Linux + Linux i-capture-the-hostname 5.10.0-9-amd64 #1 SMP Debian 5.10.70-1 (2021-09-30) x86_64 GNU/Linux I: ls -l /bin total 5476 - -rwxr-xr-x 1 root root 1234376 Aug 4 2021 bash - -rwxr-xr-x 3 root root 38984 Jul 20 2020 bunzip2 - -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzcat - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep - -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzip2 - -rwxr-xr-x 1 root root 18424 Jul 20 2020 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore - -rwxr-xr-x 1 root root 43936 Sep 23 2020 cat - -rwxr-xr-x 1 root root 72672 Sep 23 2020 chgrp - -rwxr-xr-x 1 root root 64448 Sep 23 2020 chmod - -rwxr-xr-x 1 root root 72672 Sep 23 2020 chown - -rwxr-xr-x 1 root root 151168 Sep 23 2020 cp - -rwxr-xr-x 1 root root 125560 Dec 10 2020 dash - -rwxr-xr-x 1 root root 113664 Sep 23 2020 date - -rwxr-xr-x 1 root root 80968 Sep 23 2020 dd - -rwxr-xr-x 1 root root 93936 Sep 23 2020 df - -rwxr-xr-x 1 root root 147176 Sep 23 2020 dir - -rwxr-xr-x 1 root root 84440 Jul 28 2021 dmesg - lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname - -rwxr-xr-x 1 root root 39712 Sep 23 2020 echo - -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep - -rwxr-xr-x 1 root root 39680 Sep 23 2020 false - -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep - -rwxr-xr-x 1 root root 69032 Jul 28 2021 findmnt - -rwsr-xr-x 1 root root 34896 Feb 26 2021 fusermount - -rwxr-xr-x 1 root root 203072 Nov 9 2020 grep - -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip - -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe - -rwxr-xr-x 1 root root 98048 Mar 2 2021 gzip - -rwxr-xr-x 1 root root 22600 Nov 6 2019 hostname - -rwxr-xr-x 1 root root 72840 Sep 23 2020 ln - -rwxr-xr-x 1 root root 56952 Feb 7 2020 login - -rwxr-xr-x 1 root root 147176 Sep 23 2020 ls - -rwxr-xr-x 1 root root 149736 Jul 28 2021 lsblk - -rwxr-xr-x 1 root root 85184 Sep 23 2020 mkdir - -rwxr-xr-x 1 root root 76896 Sep 23 2020 mknod - -rwxr-xr-x 1 root root 48064 Sep 23 2020 mktemp - -rwxr-xr-x 1 root root 59632 Jul 28 2021 more - -rwsr-xr-x 1 root root 55528 Jul 28 2021 mount - -rwxr-xr-x 1 root root 18664 Jul 28 2021 mountpoint - -rwxr-xr-x 1 root root 147080 Sep 23 2020 mv - lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 43872 Sep 23 2020 pwd - lrwxrwxrwx 1 root root 4 Aug 4 2021 rbash -> bash - -rwxr-xr-x 1 root root 52032 Sep 23 2020 readlink - -rwxr-xr-x 1 root root 72704 Sep 23 2020 rm - -rwxr-xr-x 1 root root 52032 Sep 23 2020 rmdir - -rwxr-xr-x 1 root root 27472 Sep 27 2020 run-parts - -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Nov 23 06:05 sh -> dash - -rwxr-xr-x 1 root root 43808 Sep 23 2020 sleep - -rwxr-xr-x 1 root root 84928 Sep 23 2020 stty - -rwsr-xr-x 1 root root 71912 Jul 28 2021 su - -rwxr-xr-x 1 root root 39744 Sep 23 2020 sync - -rwxr-xr-x 1 root root 531928 Feb 16 2021 tar - -rwxr-xr-x 1 root root 14456 Sep 27 2020 tempfile - -rwxr-xr-x 1 root root 101408 Sep 23 2020 touch - -rwxr-xr-x 1 root root 39680 Sep 23 2020 true - -rwxr-xr-x 1 root root 14328 Feb 26 2021 ulockmgr_server - -rwsr-xr-x 1 root root 35040 Jul 28 2021 umount - -rwxr-xr-x 1 root root 39744 Sep 23 2020 uname - -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress - -rwxr-xr-x 1 root root 147176 Sep 23 2020 vdir - -rwxr-xr-x 1 root root 63744 Jul 28 2021 wdctl - lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat - -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp - -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff - -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep - -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep - -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce - -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep - -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless - -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore - -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew -I: user script /srv/workspace/pbuilder/2840159/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1234376 Aug 5 10:25 bash + -rwxr-xr-x 3 root root 38984 Jul 21 2020 bunzip2 + -rwxr-xr-x 3 root root 38984 Jul 21 2020 bzcat + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep + -rwxr-xr-x 3 root root 38984 Jul 21 2020 bzip2 + -rwxr-xr-x 1 root root 18424 Jul 21 2020 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore + -rwxr-xr-x 1 root root 43936 Sep 24 2020 cat + -rwxr-xr-x 1 root root 72672 Sep 24 2020 chgrp + -rwxr-xr-x 1 root root 64448 Sep 24 2020 chmod + -rwxr-xr-x 1 root root 72672 Sep 24 2020 chown + -rwxr-xr-x 1 root root 151168 Sep 24 2020 cp + -rwxr-xr-x 1 root root 125560 Dec 11 2020 dash + -rwxr-xr-x 1 root root 113664 Sep 24 2020 date + -rwxr-xr-x 1 root root 80968 Sep 24 2020 dd + -rwxr-xr-x 1 root root 93936 Sep 24 2020 df + -rwxr-xr-x 1 root root 147176 Sep 24 2020 dir + -rwxr-xr-x 1 root root 84440 Jul 29 09:09 dmesg + lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname + -rwxr-xr-x 1 root root 39712 Sep 24 2020 echo + -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep + -rwxr-xr-x 1 root root 39680 Sep 24 2020 false + -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep + -rwxr-xr-x 1 root root 69032 Jul 29 09:09 findmnt + -rwsr-xr-x 1 root root 34896 Feb 27 2021 fusermount + -rwxr-xr-x 1 root root 203072 Nov 10 2020 grep + -rwxr-xr-x 2 root root 2346 Mar 3 2021 gunzip + -rwxr-xr-x 1 root root 6376 Mar 3 2021 gzexe + -rwxr-xr-x 1 root root 98048 Mar 3 2021 gzip + -rwxr-xr-x 1 root root 22600 Nov 8 2019 hostname + -rwxr-xr-x 1 root root 72840 Sep 24 2020 ln + -rwxr-xr-x 1 root root 56952 Feb 8 2020 login + -rwxr-xr-x 1 root root 147176 Sep 24 2020 ls + -rwxr-xr-x 1 root root 149736 Jul 29 09:09 lsblk + -rwxr-xr-x 1 root root 85184 Sep 24 2020 mkdir + -rwxr-xr-x 1 root root 76896 Sep 24 2020 mknod + -rwxr-xr-x 1 root root 48064 Sep 24 2020 mktemp + -rwxr-xr-x 1 root root 59632 Jul 29 09:09 more + -rwsr-xr-x 1 root root 55528 Jul 29 09:09 mount + -rwxr-xr-x 1 root root 18664 Jul 29 09:09 mountpoint + -rwxr-xr-x 1 root root 147080 Sep 24 2020 mv + lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 19 2021 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 43872 Sep 24 2020 pwd + lrwxrwxrwx 1 root root 4 Aug 5 10:25 rbash -> bash + -rwxr-xr-x 1 root root 52032 Sep 24 2020 readlink + -rwxr-xr-x 1 root root 72704 Sep 24 2020 rm + -rwxr-xr-x 1 root root 52032 Sep 24 2020 rmdir + -rwxr-xr-x 1 root root 27472 Sep 28 2020 run-parts + -rwxr-xr-x 1 root root 122224 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Nov 6 03:57 sh -> bash + lrwxrwxrwx 1 root root 4 Oct 22 01:41 sh.distrib -> dash + -rwxr-xr-x 1 root root 43808 Sep 24 2020 sleep + -rwxr-xr-x 1 root root 84928 Sep 24 2020 stty + -rwsr-xr-x 1 root root 71912 Jul 29 09:09 su + -rwxr-xr-x 1 root root 39744 Sep 24 2020 sync + -rwxr-xr-x 1 root root 531928 Feb 17 2021 tar + -rwxr-xr-x 1 root root 14456 Sep 28 2020 tempfile + -rwxr-xr-x 1 root root 101408 Sep 24 2020 touch + -rwxr-xr-x 1 root root 39680 Sep 24 2020 true + -rwxr-xr-x 1 root root 14328 Feb 27 2021 ulockmgr_server + -rwsr-xr-x 1 root root 35040 Jul 29 09:09 umount + -rwxr-xr-x 1 root root 39744 Sep 24 2020 uname + -rwxr-xr-x 2 root root 2346 Mar 3 2021 uncompress + -rwxr-xr-x 1 root root 147176 Sep 24 2020 vdir + -rwxr-xr-x 1 root root 63744 Jul 29 09:09 wdctl + lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Mar 3 2021 zcat + -rwxr-xr-x 1 root root 1678 Mar 3 2021 zcmp + -rwxr-xr-x 1 root root 5880 Mar 3 2021 zdiff + -rwxr-xr-x 1 root root 29 Mar 3 2021 zegrep + -rwxr-xr-x 1 root root 29 Mar 3 2021 zfgrep + -rwxr-xr-x 1 root root 2081 Mar 3 2021 zforce + -rwxr-xr-x 1 root root 7585 Mar 3 2021 zgrep + -rwxr-xr-x 1 root root 2206 Mar 3 2021 zless + -rwxr-xr-x 1 root root 1842 Mar 3 2021 zmore + -rwxr-xr-x 1 root root 4553 Mar 3 2021 znew +I: user script /srv/workspace/pbuilder/3209087/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -283,7 +317,7 @@ Get: 66 http://deb.debian.org/debian bullseye/main amd64 libxerces-c3.2 amd64 3.2.3+debian-3 [870 kB] Get: 67 http://deb.debian.org/debian bullseye/main amd64 libxerces-c-dev amd64 3.2.3+debian-3 [1692 kB] Get: 68 http://deb.debian.org/debian bullseye/main amd64 xsdcxx amd64 4.0.0-8.1 [1875 kB] -Fetched 107 MB in 1s (76.8 MB/s) +Fetched 107 MB in 2s (45.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19655 files and directories currently installed.) @@ -577,7 +611,8 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/freecontact-1.0.21/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../freecontact_1.0.21-9_source.changes +hostname: Name or service not known +I: Running cd /build/freecontact-1.0.21/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../freecontact_1.0.21-9_source.changes dpkg-buildpackage: info: source package freecontact dpkg-buildpackage: info: source version 1.0.21-9 dpkg-buildpackage: info: source distribution unstable @@ -778,7 +813,7 @@ checking for Xerces C++ Parser... yes checking for xsdcxx... xsdcxx checking for x86 cpuid output... unknown -checking for x86 cpuid 0x00000001 output... 600f12:a000800:9eb82203:78bfbff +checking for x86 cpuid 0x00000001 output... 600f12:3000800:9eb82203:78bfbff checking whether mmx is supported... yes checking whether sse is supported... yes checking whether sse2 is supported... yes @@ -964,7 +999,7 @@ checking for Xerces C++ Parser... yes checking for xsdcxx... xsdcxx checking for x86 cpuid output... unknown -checking for x86 cpuid 0x00000001 output... 600f12:5000800:9eb82203:78bfbff +checking for x86 cpuid 0x00000001 output... 600f12:c000800:9eb82203:78bfbff checking whether mmx is supported... yes checking whether sse is supported... yes checking whether sse2 is supported... yes @@ -1148,14 +1183,14 @@ make[2]: Leaving directory '/build/freecontact-1.0.21/lib' make[1]: Leaving directory '/build/freecontact-1.0.21' dh_auto_build - make -j16 + make -j15 make[1]: Entering directory '/build/freecontact-1.0.21' Making all in lib make[2]: Entering directory '/build/freecontact-1.0.21/lib' make all-am make[3]: Entering directory '/build/freecontact-1.0.21/lib' -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wall -fvisibility=hidden -falign-functions -falign-jumps -falign-labels -falign-loops -fbranch-count-reg -fcaller-saves -fcode-hoisting -fcombine-stack-adjustments -fcompare-elim -fcprop-registers -fcrossjumping -fcse-follow-jumps -fdefer-pop -fdevirtualize -fdevirtualize-speculatively -fdse -fexpensive-optimizations -fforward-propagate -fgcse -fgcse-after-reload -fguess-branch-probability -fhoist-adjacent-loads -fif-conversion -fif-conversion2 -findirect-inlining -finline -finline-functions -finline-functions-called-once -finline-small-functions -fipa-bit-cp -fipa-cp -fipa-cp-clone -fipa-icf -fipa-icf-functions -fipa-icf-variables -fipa-profile -fipa-pure-const -fipa-ra -fipa-reference -fipa-reference-addressable -fipa-sra -fipa-vrp -fisolate-erroneous-paths-dereference -floop-interchange -floop-unroll-and-jam -flra-remat -fmove-loop-invariants -fomit-frame-pointer -foptimize-sibling-calls -foptimize-strlen -fpartial-inlining -fpeel-loops -fpeephole2 -fpredictive-commoning -free -freorder-blocks -freorder-blocks-and-partition -freorder-functions -frerun-cse-after-loop -fschedule-insns2 -fshrink-wrap -fsplit-loops -fsplit-paths -fsplit-wide-types -fssa-phiopt -fstore-merging -fstrict-aliasing -fthread-jumps -ftoplevel-reorder -ftree-bit-ccp -ftree-builtin-call-dce -ftree-ccp -ftree-ch -ftree-coalesce-vars -ftree-copy-prop -ftree-dce -ftree-dominator-opts -ftree-dse -ftree-fre -ftree-loop-distribute-patterns -ftree-loop-distribution -ftree-loop-vectorize -ftree-partial-pre -ftree-pre -ftree-pta -ftree-sink -ftree-slp-vectorize -ftree-slsr -ftree-sra -ftree-switch-conversion -ftree-tail-merge -ftree-ter -ftree-vrp -funroll-completely-grow-size -funswitch-loops -fversion-loops-for-strides -ffast-math -funroll-loops -ftree-vectorizer-verbose=0 -pthread -g -O2 -fdebug-prefix-map=/build/freecontact-1.0.21=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libfreecontact_la-freecontact.lo `test -f 'freecontact.cpp' || echo './'`freecontact.cpp -/bin/bash ../libtool --tag=FC --mode=compile gfortran -fvisibility=hidden -falign-functions -falign-jumps -falign-labels -falign-loops 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../libtool --tag=FC --mode=compile gfortran -fvisibility=hidden -falign-functions -falign-jumps -falign-labels -falign-loops -fbranch-count-reg -fcaller-saves -fcode-hoisting -fcombine-stack-adjustments -fcompare-elim -fcprop-registers -fcrossjumping -fcse-follow-jumps -fdefer-pop -fdevirtualize -fdevirtualize-speculatively -fdse -fexpensive-optimizations -fforward-propagate -fgcse -fgcse-after-reload -fguess-branch-probability -fhoist-adjacent-loads -fif-conversion -fif-conversion2 -findirect-inlining -finline -finline-functions -finline-functions-called-once -finline-small-functions -fipa-bit-cp -fipa-cp -fipa-cp-clone -fipa-icf -fipa-icf-functions -fipa-icf-variables -fipa-profile -fipa-pure-const -fipa-ra -fipa-reference -fipa-reference-addressable -fipa-sra -fipa-vrp -fisolate-erroneous-paths-dereference -floop-interchange -floop-unroll-and-jam -flra-remat -fmove-loop-invariants -fomit-frame-pointer -foptimize-sibling-calls -foptimize-strlen -fpartial-inlining -fpeel-loops 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'./'`glassofast-real.f90 libtool: compile: gfortran -fvisibility=hidden -falign-functions -falign-jumps -falign-labels -falign-loops -fbranch-count-reg -fcaller-saves -fcode-hoisting -fcombine-stack-adjustments -fcompare-elim -fcprop-registers -fcrossjumping -fcse-follow-jumps -fdefer-pop -fdevirtualize -fdevirtualize-speculatively -fdse -fexpensive-optimizations -fforward-propagate -fgcse -fgcse-after-reload -fguess-branch-probability -fhoist-adjacent-loads -fif-conversion -fif-conversion2 -findirect-inlining -finline -finline-functions -finline-functions-called-once -finline-small-functions -fipa-bit-cp -fipa-cp -fipa-cp-clone -fipa-icf -fipa-icf-functions -fipa-icf-variables -fipa-profile -fipa-pure-const -fipa-ra -fipa-reference -fipa-reference-addressable -fipa-sra -fipa-vrp -fisolate-erroneous-paths-dereference -floop-interchange -floop-unroll-and-jam -flra-remat -fmove-loop-invariants -fomit-frame-pointer -foptimize-sibling-calls -foptimize-strlen -fpartial-inlining -fpeel-loops 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'-Werror=' argument '-funroll-completely-grow-size' is not valid for Fortran libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wall -fvisibility=hidden -falign-functions -falign-jumps -falign-labels -falign-loops -fbranch-count-reg -fcaller-saves -fcode-hoisting -fcombine-stack-adjustments -fcompare-elim -fcprop-registers -fcrossjumping -fcse-follow-jumps -fdefer-pop -fdevirtualize -fdevirtualize-speculatively -fdse -fexpensive-optimizations -fforward-propagate -fgcse -fgcse-after-reload -fguess-branch-probability -fhoist-adjacent-loads -fif-conversion -fif-conversion2 -findirect-inlining -finline -finline-functions -finline-functions-called-once -finline-small-functions -fipa-bit-cp -fipa-cp -fipa-cp-clone -fipa-icf -fipa-icf-functions -fipa-icf-variables -fipa-profile -fipa-pure-const -fipa-ra -fipa-reference -fipa-reference-addressable -fipa-sra -fipa-vrp -fisolate-erroneous-paths-dereference -floop-interchange -floop-unroll-and-jam -flra-remat 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-fstack-protector-strong -Wformat -Werror=format-security -c freecontact.cpp -fPIC -DPIC -o .libs/libfreecontact_la-freecontact.o @@ -1232,7 +1267,7 @@ 1001 | ali_t& ali_t::push(const std::vector& __al) throw (alilen_error) | ^~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wall -fvisibility=hidden -falign-functions -falign-jumps -falign-labels -falign-loops -fbranch-count-reg -fcaller-saves -fcode-hoisting -fcombine-stack-adjustments -fcompare-elim -fcprop-registers -fcrossjumping -fcse-follow-jumps -fdefer-pop -fdevirtualize -fdevirtualize-speculatively -fdse -fexpensive-optimizations -fforward-propagate -fgcse -fgcse-after-reload -fguess-branch-probability -fhoist-adjacent-loads -fif-conversion -fif-conversion2 -findirect-inlining -finline -finline-functions -finline-functions-called-once -finline-small-functions -fipa-bit-cp -fipa-cp -fipa-cp-clone -fipa-icf -fipa-icf-functions -fipa-icf-variables -fipa-profile -fipa-pure-const -fipa-ra 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-fstore-merging -fstrict-aliasing -fthread-jumps -ftoplevel-reorder -ftree-bit-ccp -ftree-builtin-call-dce -ftree-ccp -ftree-ch -ftree-coalesce-vars -ftree-copy-prop -ftree-dce -ftree-dominator-opts -ftree-dse -ftree-fre -ftree-loop-distribute-patterns -ftree-loop-distribution -ftree-loop-vectorize -ftree-partial-pre -ftree-pre -ftree-pta -ftree-sink -ftree-slp-vectorize -ftree-slsr -ftree-sra -ftree-switch-conversion -ftree-tail-merge -ftree-ter -ftree-vrp -funroll-completely-grow-size -funswitch-loops -fversion-loops-for-strides -ffast-math -funroll-loops -ftree-vectorizer-verbose=0 -pthread -g -O2 -fdebug-prefix-map=/build/freecontact-1.0.21=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -version-info 0:0:0 -Wl,-z,relro -Wl,-z,now -o libfreecontact.la -rpath /usr/lib/x86_64-linux-gnu libfreecontact_la-freecontact.lo libfreecontact_la-glassofast-real.lo -lrt -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/10/../../.. -lgfortran -lm -lquadmath -lblas -llapack libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/10/crtbeginS.o .libs/libfreecontact_la-freecontact.o .libs/libfreecontact_la-glassofast-real.o -lrt -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/10/../../.. -lgfortran -lquadmath -lblas -llapack -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/10/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu/crtn.o -fopenmp -pthread -g -O2 -fstack-protector-strong -pthread -Wl,-z -Wl,relro -Wl,-z -Wl,now -fopenmp -pthread -Wl,-soname -Wl,libfreecontact.so.0 -o .libs/libfreecontact.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libfreecontact.so.0" && ln -s "libfreecontact.so.0.0.0" "libfreecontact.so.0") libtool: link: (cd ".libs" && rm -f "libfreecontact.so" && ln -s "libfreecontact.so.0.0.0" "libfreecontact.so") @@ -1280,465 +1315,395 @@ g++ -DHAVE_CONFIG_H -I. -I../lib -I../lib -I../src -I/usr/include -I/usr/include/xercesc -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/build/freecontact-1.0.21=. -fstack-protector-strong -Wformat -Werror=format-security -c -o freecontact-freecontact_input_xsd.o `test -f 'freecontact_input_xsd.cxx' || echo './'`freecontact_input_xsd.cxx g++ -DHAVE_CONFIG_H -I. -I../lib -I../lib -I../src -I/usr/include -I/usr/include/xercesc -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/build/freecontact-1.0.21=. -fstack-protector-strong -Wformat -Werror=format-security -c -o freecontact-_write_bioxsd.o `test -f '_write_bioxsd.cpp' || echo './'`_write_bioxsd.cpp g++ -DHAVE_CONFIG_H -I. -I../lib -I../lib -I../src -I/usr/include -I/usr/include/xercesc -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/build/freecontact-1.0.21=. -fstack-protector-strong -Wformat -Werror=format-security -c -o freecontact-freecontact_output_xsd.o `test -f 'freecontact_output_xsd.cxx' || echo './'`freecontact_output_xsd.cxx -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:1507:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 1507 | sequence (::std::auto_ptr< sequence_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:1585:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 1585 | species (::std::auto_ptr< species_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:1665:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 1665 | reference (::std::auto_ptr< reference_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:1741:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 1741 | name (::std::auto_ptr< name_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:1817:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 1817 | note (::std::auto_ptr< note_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:1893:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 1893 | translationData (::std::auto_ptr< translationData_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:1969:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 1969 | inlineBaseQuality (::std::auto_ptr< inlineBaseQuality_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:1992:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 1992 | BiosequenceRecord (::std::auto_ptr< sequence_type >); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:2105:45: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 2105 | GeneralNucleotideSequenceRecord (::std::auto_ptr< sequence_type >); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:2186:44: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 2186 | GeneralAminoacidSequenceRecord (::std::auto_ptr< sequence_type >); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:2267:38: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 2267 | NucleotideSequenceRecord (::std::auto_ptr< sequence_type >); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:2348:37: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 2348 | AminoacidSequenceRecord (::std::auto_ptr< sequence_type >); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:2611:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 2611 | note (::std::auto_ptr< note_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:3051:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 3051 | pos (::std::auto_ptr< pos_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:3109:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 3109 | len (::std::auto_ptr< len_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:3287:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 3287 | min (::std::auto_ptr< min_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:3366:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 3366 | max (::std::auto_ptr< max_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:3442:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 3442 | strand (::std::auto_ptr< strand_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:3500:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 3500 | minCertainty (::std::auto_ptr< minCertainty_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:3567:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 3567 | maxCertainty (::std::auto_ptr< maxCertainty_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:3877:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 3877 | pos (::std::auto_ptr< pos_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:3935:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 3935 | bases (::std::auto_ptr< bases_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:4110:36: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 4110 | localAlignmentPosition (::std::auto_ptr< localAlignmentPosition_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:4186:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 4186 | sequenceRecord (::std::auto_ptr< sequenceRecord_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:4262:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 4262 | sequenceReference (::std::auto_ptr< sequenceReference_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:4338:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 4338 | sequenceName (::std::auto_ptr< sequenceName_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:4414:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 4414 | species (::std::auto_ptr< species_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:4490:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 4490 | genomeBuild (::std::auto_ptr< genomeBuild_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:4566:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 4566 | chromosome (::std::auto_ptr< chromosome_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:4644:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 4644 | subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:4720:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 4720 | variantAccession (::std::auto_ptr< variantAccession_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:4796:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 4796 | variantNote (::std::auto_ptr< variantNote_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:5064:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 5064 | reversedDirection (::std::auto_ptr< reversedDirection_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:5589:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 5589 | name (::std::auto_ptr< name_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:5798:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 5798 | className (::std::auto_ptr< className_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:5938:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 5938 | properties (::std::auto_ptr< properties_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:6115:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 6115 | specificFeatureName (::std::auto_ptr< specificFeatureName_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:1507:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 1507 | sequence (::std::auto_ptr< sequence_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:1585:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 1585 | species (::std::auto_ptr< species_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:5938:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 5938 | properties (::std::auto_ptr< properties_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -1747,9 +1712,9 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:1665:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 1665 | reference (::std::auto_ptr< reference_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:6115:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 6115 | specificFeatureName (::std::auto_ptr< specificFeatureName_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -1758,183 +1723,86 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:1741:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 1741 | name (::std::auto_ptr< name_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:6385:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 6385 | note (::std::auto_ptr< note_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:1817:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 1817 | note (::std::auto_ptr< note_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:6627:36: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 6627 | appliesToWholeSequence (::std::auto_ptr< appliesToWholeSequence_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:6703:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 6703 | position (::std::auto_ptr< position_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:1893:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 1893 | translationData (::std::auto_ptr< translationData_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:1969:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 1969 | inlineBaseQuality (::std::auto_ptr< inlineBaseQuality_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:6843:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 6843 | occurrenceName (::std::auto_ptr< occurrenceName_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:1992:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 1992 | BiosequenceRecord (::std::auto_ptr< sequence_type >); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:6919:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 6919 | occurrenceNote (::std::auto_ptr< occurrenceNote_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:6995:32: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 6995 | featureTypeDetails (::std::auto_ptr< featureTypeDetails_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:7203:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 7203 | frame (::std::auto_ptr< frame_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:7279:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 7279 | phase (::std::auto_ptr< phase_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:7419:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 7419 | alignment (::std::auto_ptr< alignment_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:2105:45: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 2105 | GeneralNucleotideSequenceRecord (::std::auto_ptr< sequence_type >); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:2186:44: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 2186 | GeneralAminoacidSequenceRecord (::std::auto_ptr< sequence_type >); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:7279:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 7279 | phase (::std::auto_ptr< phase_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -1943,9 +1811,9 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:2267:38: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 2267 | NucleotideSequenceRecord (::std::auto_ptr< sequence_type >); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:7419:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 7419 | alignment (::std::auto_ptr< alignment_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -1954,404 +1822,239 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:2348:37: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 2348 | AminoacidSequenceRecord (::std::auto_ptr< sequence_type >); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:7588:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 7588 | referenceSequence (::std::auto_ptr< referenceSequence_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:7742:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 7742 | FeatureRecord (::std::auto_ptr< referenceSequence_type >); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:7901:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 7901 | predicted (::std::auto_ptr< predicted_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:7977:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 7977 | experimental (::std::auto_ptr< experimental_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:2611:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 2611 | note (::std::auto_ptr< note_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:8130:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 8130 | method (::std::auto_ptr< method_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:8217:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 8217 | MethodResult (::std::auto_ptr< method_type >); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:3051:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 3051 | pos (::std::auto_ptr< pos_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:8357:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 8357 | methodIdRef (::std::auto_ptr< methodIdRef_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:3109:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 3109 | len (::std::auto_ptr< len_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:8444:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 8444 | Result (::std::auto_ptr< methodIdRef_type >); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:8602:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 8602 | method (::std::auto_ptr< method_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:8678:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 8678 | methodIdRef (::std::auto_ptr< methodIdRef_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:8818:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 8818 | verdict (::std::auto_ptr< verdict_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:3287:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 3287 | min (::std::auto_ptr< min_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:8973:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 8973 | dataReference (::std::auto_ptr< dataReference_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:3366:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 3366 | max (::std::auto_ptr< max_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:9113:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 9113 | verdict (::std::auto_ptr< verdict_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:3442:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 3442 | strand (::std::auto_ptr< strand_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:3500:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 3500 | minCertainty (::std::auto_ptr< minCertainty_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:9189:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 9189 | reliability (::std::auto_ptr< reliability_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:3567:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 3567 | maxCertainty (::std::auto_ptr< maxCertainty_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:9212:34: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 9212 | ExperimentalEvidence (::std::auto_ptr< dataReference_type >); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:3877:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 3877 | pos (::std::auto_ptr< pos_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:3935:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 3935 | bases (::std::auto_ptr< bases_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:9566:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 9566 | name (::std::auto_ptr< name_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:9642:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 9642 | index (::std::auto_ptr< index_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:9718:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 9718 | unit (::std::auto_ptr< unit_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:9794:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 9794 | note (::std::auto_ptr< note_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:9974:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 9974 | position (::std::auto_ptr< position_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:10032:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 10032 | value (::std::auto_ptr< value_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:10108:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -10108 | scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:4110:36: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4110 | localAlignmentPosition (::std::auto_ptr< localAlignmentPosition_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:4186:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4186 | sequenceRecord (::std::auto_ptr< sequenceRecord_type > p); +BioXSD-1.1_xsd.hxx:10108:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +10108 | scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -2361,32 +2064,9 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:4262:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4262 | sequenceReference (::std::auto_ptr< sequenceReference_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:10285:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 10285 | pos (::std::auto_ptr< pos_type > p); | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:4338:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4338 | sequenceName (::std::auto_ptr< sequenceName_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -2395,11 +2075,6 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:4414:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4414 | species (::std::auto_ptr< species_type > p); - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:10361:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 10361 | strand (::std::auto_ptr< strand_type > p); | ^~~~~~~~ @@ -2410,75 +2085,18 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:10419:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 10419 | certainty (::std::auto_ptr< certainty_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:4490:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4490 | genomeBuild (::std::auto_ptr< genomeBuild_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:4566:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4566 | chromosome (::std::auto_ptr< chromosome_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:4644:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4644 | subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:4720:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4720 | variantAccession (::std::auto_ptr< variantAccession_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:4796:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4796 | variantNote (::std::auto_ptr< variantNote_type > p); - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:10679:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 10679 | pos (::std::auto_ptr< pos_type > p); | ^~~~~~~~ @@ -2489,548 +2107,381 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:10755:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 10755 | strand (::std::auto_ptr< strand_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:10813:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 10813 | certainty (::std::auto_ptr< certainty_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:11072:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 11072 | pos (::std::auto_ptr< pos_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:11148:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 11148 | strand (::std::auto_ptr< strand_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:11206:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 11206 | certainty (::std::auto_ptr< certainty_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:11465:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 11465 | min (::std::auto_ptr< min_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:11544:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 11544 | max (::std::auto_ptr< max_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:11620:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 11620 | strand (::std::auto_ptr< strand_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:11678:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 11678 | minCertainty (::std::auto_ptr< minCertainty_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:11745:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 11745 | maxCertainty (::std::auto_ptr< maxCertainty_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:5064:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 5064 | reversedDirection (::std::auto_ptr< reversedDirection_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:12003:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 12003 | max (::std::auto_ptr< max_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:12061:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 12061 | certainty (::std::auto_ptr< certainty_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:12377:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 12377 | insertion (::std::auto_ptr< insertion_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:5589:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 5589 | name (::std::auto_ptr< name_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:12517:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 12517 | nextPoint (::std::auto_ptr< nextPoint_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:12593:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 12593 | nextPartition (::std::auto_ptr< nextPartition_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:12669:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 12669 | samePoint (::std::auto_ptr< samePoint_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:12745:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 12745 | samePartition (::std::auto_ptr< samePartition_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:12821:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 12821 | outside (::std::auto_ptr< outside_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:13071:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 13071 | correspondance (::std::auto_ptr< correspondance_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:13211:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 13211 | insertion (::std::auto_ptr< insertion_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:13351:39: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 13351 | explicitSequenceReference (::std::auto_ptr< explicitSequenceReference_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:5798:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 5798 | className (::std::auto_ptr< className_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:5938:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 5938 | properties (::std::auto_ptr< properties_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:13597:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 13597 | reference (::std::auto_ptr< reference_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:6115:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 6115 | specificFeatureName (::std::auto_ptr< specificFeatureName_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:6385:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 6385 | note (::std::auto_ptr< note_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:13832:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 13832 | geneticCode (::std::auto_ptr< geneticCode_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:13908:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 13908 | phase (::std::auto_ptr< phase_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:13984:42: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 13984 | reversedTranslationDirection (::std::auto_ptr< reversedTranslationDirection_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:14226:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 14226 | dbName (::std::auto_ptr< dbName_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:14304:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 14304 | dbUri (::std::auto_ptr< dbUri_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:14380:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 14380 | dbVersion (::std::auto_ptr< dbVersion_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:14511:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 14511 | wsdl (::std::auto_ptr< wsdl_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:14587:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 14587 | wsdlService (::std::auto_ptr< wsdlService_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:14663:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 14663 | wsdlPort (::std::auto_ptr< wsdlPort_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:6627:36: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 6627 | appliesToWholeSequence (::std::auto_ptr< appliesToWholeSequence_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:14739:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 14739 | webserviceOperation (::std::auto_ptr< webserviceOperation_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:14815:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 14815 | webserviceVersion (::std::auto_ptr< webserviceVersion_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:6703:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 6703 | position (::std::auto_ptr< position_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:14894:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 14894 | webserviceDate (::std::auto_ptr< webserviceDate_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:6843:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 6843 | occurrenceName (::std::auto_ptr< occurrenceName_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:6919:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 6919 | occurrenceNote (::std::auto_ptr< occurrenceNote_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:6995:32: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 6995 | featureTypeDetails (::std::auto_ptr< featureTypeDetails_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:7203:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 7203 | frame (::std::auto_ptr< frame_type > p); - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:15075:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 15075 | accession (::std::auto_ptr< accession_type > p); | ^~~~~~~~ @@ -3041,161 +2492,117 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:15151:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 15151 | entryUri (::std::auto_ptr< entryUri_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:7279:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 7279 | phase (::std::auto_ptr< phase_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:15227:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 15227 | entryVersion (::std::auto_ptr< entryVersion_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:15305:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 15305 | date (::std::auto_ptr< date_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:15481:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 15481 | ontologyName (::std::auto_ptr< ontologyName_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:15559:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 15559 | ontologyUri (::std::auto_ptr< ontologyUri_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:7419:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 7419 | alignment (::std::auto_ptr< alignment_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:15635:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 15635 | ontologyVersion (::std::auto_ptr< ontologyVersion_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:15870:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 15870 | accession (::std::auto_ptr< accession_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:15946:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 15946 | conceptUri (::std::auto_ptr< conceptUri_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:16028:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 16028 | term (::std::auto_ptr< term_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:16207:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 16207 | speciesName (::std::auto_ptr< speciesName_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:7588:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 7588 | referenceSequence (::std::auto_ptr< referenceSequence_type > p); - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:16283:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 16283 | speciesNote (::std::auto_ptr< speciesNote_type > p); | ^~~~~~~~ @@ -3206,147 +2613,87 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:16459:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 16459 | subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:16538:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 16538 | supersequence (::std::auto_ptr< supersequence_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:16617:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 16617 | supersequenceName (::std::auto_ptr< supersequenceName_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:16693:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 16693 | sequenceVersion (::std::auto_ptr< sequenceVersion_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:16769:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 16769 | variantAccession (::std::auto_ptr< variantAccession_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:16845:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 16845 | variantNote (::std::auto_ptr< variantNote_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:7742:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 7742 | FeatureRecord (::std::auto_ptr< referenceSequence_type >); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:17130:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 17130 | name (::std::auto_ptr< name_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:17206:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -17206 | uri (::std::auto_ptr< uri_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:7901:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 7901 | predicted (::std::auto_ptr< predicted_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:17282:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -17282 | version (::std::auto_ptr< version_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:7977:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 7977 | experimental (::std::auto_ptr< experimental_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:17206:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +17206 | uri (::std::auto_ptr< uri_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -3354,90 +2701,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:17358:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -17358 | date (::std::auto_ptr< date_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:17434:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -17434 | wsdl (::std::auto_ptr< wsdl_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:17510:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -17510 | wsdlService (::std::auto_ptr< wsdlService_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:17586:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -17586 | wsdlPort (::std::auto_ptr< wsdlPort_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:17662:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -17662 | webserviceOperation (::std::auto_ptr< webserviceOperation_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:17738:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -17738 | webserviceVersion (::std::auto_ptr< webserviceVersion_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:17817:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -17817 | webserviceDate (::std::auto_ptr< webserviceDate_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:1507:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -3498,17 +2761,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:8130:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 8130 | method (::std::auto_ptr< method_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:1893:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -3521,17 +2773,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:8217:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 8217 | MethodResult (::std::auto_ptr< method_type >); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:1969:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -3557,9 +2798,9 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:8357:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 8357 | methodIdRef (::std::auto_ptr< methodIdRef_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:17282:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +17282 | version (::std::auto_ptr< version_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -3568,9 +2809,9 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:8444:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 8444 | Result (::std::auto_ptr< methodIdRef_type >); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:17358:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +17358 | date (::std::auto_ptr< date_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -3579,9 +2820,9 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:8602:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 8602 | method (::std::auto_ptr< method_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:17434:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +17434 | wsdl (::std::auto_ptr< wsdl_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -3590,8 +2831,8 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:8678:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 8678 | methodIdRef (::std::auto_ptr< methodIdRef_type > p); +BioXSD-1.1_xsd.hxx:17510:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +17510 | wsdlService (::std::auto_ptr< wsdlService_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -3601,9 +2842,42 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:8818:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 8818 | verdict (::std::auto_ptr< verdict_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:17586:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +17586 | wsdlPort (::std::auto_ptr< wsdlPort_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:17662:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +17662 | webserviceOperation (::std::auto_ptr< webserviceOperation_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:17738:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +17738 | webserviceVersion (::std::auto_ptr< webserviceVersion_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:17817:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +17817 | webserviceDate (::std::auto_ptr< webserviceDate_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -3659,21 +2933,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:8973:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 8973 | dataReference (::std::auto_ptr< dataReference_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:9113:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 9113 | verdict (::std::auto_ptr< verdict_type > p); - | ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:2611:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -3681,40 +2940,11 @@ | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:9189:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 9189 | reliability (::std::auto_ptr< reliability_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:9212:34: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 9212 | ExperimentalEvidence (::std::auto_ptr< dataReference_type >); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:3051:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -3787,17 +3017,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:9566:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 9566 | name (::std::auto_ptr< name_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:3567:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -3810,39 +3029,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:9642:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 9642 | index (::std::auto_ptr< index_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:9718:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 9718 | unit (::std::auto_ptr< unit_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:9794:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 9794 | note (::std::auto_ptr< note_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:3877:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -3927,18 +3113,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:22916:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -22916 | relationName (::std::auto_ptr< relationName_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:4490:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -4000,65 +3174,9 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:9974:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 9974 | position (::std::auto_ptr< position_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:10032:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -10032 | value (::std::auto_ptr< value_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:10108:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -10108 | scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:23505:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -23505 | canonicalVariant (::std::auto_ptr< canonicalVariant_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:10285:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -10285 | pos (::std::auto_ptr< pos_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:10361:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -10361 | strand (::std::auto_ptr< strand_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:22916:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +22916 | relationName (::std::auto_ptr< relationName_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -4079,9 +3197,9 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:10419:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -10419 | certainty (::std::auto_ptr< certainty_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:23505:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +23505 | canonicalVariant (::std::auto_ptr< canonicalVariant_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -4089,45 +3207,21 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:23645:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 23645 | missing (::std::auto_ptr< missing_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:23787:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -23787 | position (::std::auto_ptr< position_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:10679:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -10679 | pos (::std::auto_ptr< pos_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:10755:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -10755 | strand (::std::auto_ptr< strand_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:23787:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +23787 | position (::std::auto_ptr< position_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -4136,67 +3230,20 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:10813:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -10813 | certainty (::std::auto_ptr< certainty_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:23961:34: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 23961 | alignmentOfReference (::std::auto_ptr< alignmentOfReference_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:24019:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -24019 | alignedSequence (::std::auto_ptr< alignedSequence_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:24042:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -24042 | alignment (::std::auto_ptr< alignedSequence_type >); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:11072:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -11072 | pos (::std::auto_ptr< pos_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:11148:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -11148 | strand (::std::auto_ptr< strand_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:24019:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +24019 | alignedSequence (::std::auto_ptr< alignedSequence_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -4205,8 +3252,8 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:11206:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -11206 | certainty (::std::auto_ptr< certainty_type > p); +BioXSD-1.1_xsd.hxx:24042:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +24042 | alignment (::std::auto_ptr< alignedSequence_type >); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -4215,144 +3262,67 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:24200:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 24200 | sequenceRecord (::std::auto_ptr< sequenceRecord_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:24276:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 24276 | sequenceReference (::std::auto_ptr< sequenceReference_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:24352:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 24352 | sequenceName (::std::auto_ptr< sequenceName_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:24428:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 24428 | species (::std::auto_ptr< species_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:24504:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 24504 | genomeBuild (::std::auto_ptr< genomeBuild_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:24580:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 24580 | chromosome (::std::auto_ptr< chromosome_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:24658:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -24658 | subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:24734:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -24734 | variantAccession (::std::auto_ptr< variantAccession_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:24810:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -24810 | variantNote (::std::auto_ptr< variantNote_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:24970:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -24970 | feature (::std::auto_ptr< feature_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:25046:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -25046 | condensedReferences (::std::auto_ptr< condensedReferences_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:11465:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -11465 | min (::std::auto_ptr< min_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here @@ -4371,20 +3341,9 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:11544:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -11544 | max (::std::auto_ptr< max_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:11620:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -11620 | strand (::std::auto_ptr< strand_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:24658:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +24658 | subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -4393,9 +3352,9 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:11678:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -11678 | minCertainty (::std::auto_ptr< minCertainty_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:24734:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +24734 | variantAccession (::std::auto_ptr< variantAccession_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -4404,9 +3363,9 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:11745:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -11745 | maxCertainty (::std::auto_ptr< maxCertainty_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:24810:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +24810 | variantNote (::std::auto_ptr< variantNote_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -4414,22 +3373,10 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:25133:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -25133 | annotation (::std::auto_ptr< feature_type >); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:12003:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -12003 | max (::std::auto_ptr< max_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:24970:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +24970 | feature (::std::auto_ptr< feature_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -4438,9 +3385,9 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:12061:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -12061 | certainty (::std::auto_ptr< certainty_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:25046:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +25046 | condensedReferences (::std::auto_ptr< condensedReferences_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -4460,6 +3407,17 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:25133:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +25133 | annotation (::std::auto_ptr< feature_type >); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:5938:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -4496,17 +3454,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:12377:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -12377 | insertion (::std::auto_ptr< insertion_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:6627:36: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -4568,9 +3515,9 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:12517:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -12517 | nextPoint (::std::auto_ptr< nextPoint_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:25778:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +25778 | localId (::std::auto_ptr< localId_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -4579,9 +3526,9 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:12593:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -12593 | nextPartition (::std::auto_ptr< nextPartition_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:25932:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +25932 | code (::std::auto_ptr< code_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -4590,8 +3537,8 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:12669:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -12669 | samePoint (::std::auto_ptr< samePoint_type > p); +BioXSD-1.1_xsd.hxx:26122:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +26122 | aminoacid (::std::auto_ptr< aminoacid_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -4600,39 +3547,14 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:25778:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -25778 | localId (::std::auto_ptr< localId_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:25932:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -25932 | code (::std::auto_ptr< code_type > p); +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:26253:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +26253 | note (::std::auto_ptr< note_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:26122:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -26122 | aminoacid (::std::auto_ptr< aminoacid_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ @@ -4648,18 +3570,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:26253:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -26253 | note (::std::auto_ptr< note_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:7279:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -4672,34 +3582,10 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:7419:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 7419 | alignment (::std::auto_ptr< alignment_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:26781:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 26781 | method (::std::auto_ptr< method_type > p); | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:12745:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -12745 | samePartition (::std::auto_ptr< samePartition_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -4707,153 +3593,119 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:26857:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 26857 | ontology (::std::auto_ptr< ontology_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:12821:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -12821 | outside (::std::auto_ptr< outside_type > p); - | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:7419:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 7419 | alignment (::std::auto_ptr< alignment_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:26933:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 26933 | database (::std::auto_ptr< database_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:27009:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 27009 | scoreType (::std::auto_ptr< scoreType_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:7588:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 7588 | referenceSequence (::std::auto_ptr< referenceSequence_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:27164:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 27164 | localId (::std::auto_ptr< localId_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:13071:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -13071 | correspondance (::std::auto_ptr< correspondance_type > p); - | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:7588:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 7588 | referenceSequence (::std::auto_ptr< referenceSequence_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:27316:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 27316 | localId (::std::auto_ptr< localId_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:27468:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 27468 | localId (::std::auto_ptr< localId_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:13211:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -13211 | insertion (::std::auto_ptr< insertion_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:27620:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 27620 | localId (::std::auto_ptr< localId_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:27773:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 27773 | localId (::std::auto_ptr< localId_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:13351:39: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -13351 | explicitSequenceReference (::std::auto_ptr< explicitSequenceReference_type > p); - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:27925:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 27925 | feature (::std::auto_ptr< feature_type > p); | ^~~~~~~~ @@ -4864,22 +3716,14 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:28001:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 28001 | condensedReferences (::std::auto_ptr< condensedReferences_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ @@ -4895,18 +3739,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:28088:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -28088 | annotation1 (::std::auto_ptr< feature_type >); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:7901:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -4919,10 +3751,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:13597:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -13597 | reference (::std::auto_ptr< reference_type > p); - | ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:7977:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -4930,211 +3758,127 @@ | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:8130:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 8130 | method (::std::auto_ptr< method_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:8217:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 8217 | MethodResult (::std::auto_ptr< method_type >); - | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:13832:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -13832 | geneticCode (::std::auto_ptr< geneticCode_type > p); +BioXSD-1.1_xsd.hxx:28088:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +28088 | annotation1 (::std::auto_ptr< feature_type >); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:13908:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -13908 | phase (::std::auto_ptr< phase_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:13984:42: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -13984 | reversedTranslationDirection (::std::auto_ptr< reversedTranslationDirection_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:28471:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 28471 | method (::std::auto_ptr< method_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:28547:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 28547 | methodIdRef (::std::auto_ptr< methodIdRef_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:28623:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 28623 | ontology (::std::auto_ptr< ontology_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:8357:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 8357 | methodIdRef (::std::auto_ptr< methodIdRef_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:28699:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 28699 | ontologyIdRef (::std::auto_ptr< ontologyIdRef_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:8444:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 8444 | Result (::std::auto_ptr< methodIdRef_type >); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:28775:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 28775 | database (::std::auto_ptr< database_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:28851:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 28851 | databaseIdRef (::std::auto_ptr< databaseIdRef_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:28927:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 28927 | scoreType (::std::auto_ptr< scoreType_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:29003:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 29003 | scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:14226:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -14226 | dbName (::std::auto_ptr< dbName_type > p); +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:8130:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 8130 | method (::std::auto_ptr< method_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:8602:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 8602 | method (::std::auto_ptr< method_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:8217:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 8217 | MethodResult (::std::auto_ptr< method_type >); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -5142,22 +3886,23 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:14304:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -14304 | dbUri (::std::auto_ptr< dbUri_type > p); - | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:8357:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 8357 | methodIdRef (::std::auto_ptr< methodIdRef_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:8678:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 8678 | methodIdRef (::std::auto_ptr< methodIdRef_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:8444:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 8444 | Result (::std::auto_ptr< methodIdRef_type >); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -5166,9 +3911,9 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:14380:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -14380 | dbVersion (::std::auto_ptr< dbVersion_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:29244:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +29244 | localId (::std::auto_ptr< localId_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -5177,9 +3922,9 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:14511:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -14511 | wsdl (::std::auto_ptr< wsdl_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:29415:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +29415 | relationName (::std::auto_ptr< relationName_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -5189,6 +3934,30 @@ | ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:8602:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 8602 | method (::std::auto_ptr< method_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:8678:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 8678 | methodIdRef (::std::auto_ptr< methodIdRef_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:8818:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 8818 | verdict (::std::auto_ptr< verdict_type > p); | ^~~~~~~~ @@ -5199,10 +3968,15 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:1507:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 1507 | sequence (::std::auto_ptr< sequence_type > p); + | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:14587:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -14587 | wsdlService (::std::auto_ptr< wsdlService_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:29826:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +29826 | localIdRef (::std::auto_ptr< localIdRef_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -5210,55 +3984,54 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:14663:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -14663 | wsdlPort (::std::auto_ptr< wsdlPort_type > p); - | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:14739:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -14739 | webserviceOperation (::std::auto_ptr< webserviceOperation_type > p); - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:1585:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 1585 | species (::std::auto_ptr< species_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:14815:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -14815 | webserviceVersion (::std::auto_ptr< webserviceVersion_type > p); - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:1665:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 1665 | reference (::std::auto_ptr< reference_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:14894:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -14894 | webserviceDate (::std::auto_ptr< webserviceDate_type > p); - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:1741:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 1741 | name (::std::auto_ptr< name_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:29244:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -29244 | localId (::std::auto_ptr< localId_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:1817:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 1817 | note (::std::auto_ptr< note_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -5268,9 +4041,9 @@ | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:29415:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -29415 | relationName (::std::auto_ptr< relationName_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:1893:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 1893 | translationData (::std::auto_ptr< translationData_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -5326,22 +4099,11 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:15075:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -15075 | accession (::std::auto_ptr< accession_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:29826:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -29826 | localIdRef (::std::auto_ptr< localIdRef_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:1969:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 1969 | inlineBaseQuality (::std::auto_ptr< inlineBaseQuality_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -5349,69 +4111,15 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:15151:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -15151 | entryUri (::std::auto_ptr< entryUri_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:15227:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -15227 | entryVersion (::std::auto_ptr< entryVersion_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:15305:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -15305 | date (::std::auto_ptr< date_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:15481:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -15481 | ontologyName (::std::auto_ptr< ontologyName_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:15559:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -15559 | ontologyUri (::std::auto_ptr< ontologyUri_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:15635:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -15635 | ontologyVersion (::std::auto_ptr< ontologyVersion_type > p); - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:1992:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 1992 | BiosequenceRecord (::std::auto_ptr< sequence_type >); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ @@ -5439,17 +4147,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:15870:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -15870 | accession (::std::auto_ptr< accession_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:9718:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -5462,17 +4159,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:15946:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -15946 | conceptUri (::std::auto_ptr< conceptUri_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:9794:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -5485,36 +4171,51 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:16028:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -16028 | term (::std::auto_ptr< term_type > p); - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:2105:45: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 2105 | GeneralNucleotideSequenceRecord (::std::auto_ptr< sequence_type >); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:16207:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -16207 | speciesName (::std::auto_ptr< speciesName_type > p); - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:2186:44: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 2186 | GeneralAminoacidSequenceRecord (::std::auto_ptr< sequence_type >); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:16283:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -16283 | speciesNote (::std::auto_ptr< speciesNote_type > p); - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:2267:38: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 2267 | NucleotideSequenceRecord (::std::auto_ptr< sequence_type >); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:2348:37: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 2348 | AminoacidSequenceRecord (::std::auto_ptr< sequence_type >); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ @@ -5542,17 +4243,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:16459:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -16459 | subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:10108:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -5565,61 +4255,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:16538:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -16538 | supersequence (::std::auto_ptr< supersequence_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:16617:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -16617 | supersequenceName (::std::auto_ptr< supersequenceName_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:16693:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -16693 | sequenceVersion (::std::auto_ptr< sequenceVersion_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:16769:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -16769 | variantAccession (::std::auto_ptr< variantAccession_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:16845:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -16845 | variantNote (::std::auto_ptr< variantNote_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:10285:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -5661,10 +4296,6 @@ BioXSD-1.1_xsd.hxx:10679:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 10679 | pos (::std::auto_ptr< pos_type > p); | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:17130:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -17130 | name (::std::auto_ptr< name_type > p); - | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -5672,22 +4303,11 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:10755:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 10755 | strand (::std::auto_ptr< strand_type > p); | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:17206:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -17206 | uri (::std::auto_ptr< uri_type > p); - | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -5695,13 +4315,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:10813:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -5714,44 +4327,62 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:17282:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -17282 | version (::std::auto_ptr< version_type > p); - | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:11072:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +11072 | pos (::std::auto_ptr< pos_type > p); + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:2611:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 2611 | note (::std::auto_ptr< note_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:17358:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -17358 | date (::std::auto_ptr< date_type > p); - | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:11072:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -11072 | pos (::std::auto_ptr< pos_type > p); +BioXSD-1.1_xsd.hxx:11148:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +11148 | strand (::std::auto_ptr< strand_type > p); + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:3051:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 3051 | pos (::std::auto_ptr< pos_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:17434:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -17434 | wsdl (::std::auto_ptr< wsdl_type > p); - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:3109:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 3109 | len (::std::auto_ptr< len_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:110:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 110 | sequence (::std::auto_ptr< sequence_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -5759,67 +4390,69 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:11148:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -11148 | strand (::std::auto_ptr< strand_type > p); - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:3287:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 3287 | min (::std::auto_ptr< min_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:17510:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -17510 | wsdlService (::std::auto_ptr< wsdlService_type > p); - | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:11206:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -11206 | certainty (::std::auto_ptr< certainty_type > p); - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:3366:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 3366 | max (::std::auto_ptr< max_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:3442:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 3442 | strand (::std::auto_ptr< strand_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:17586:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -17586 | wsdlPort (::std::auto_ptr< wsdlPort_type > p); - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:3500:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 3500 | minCertainty (::std::auto_ptr< minCertainty_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:17662:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -17662 | webserviceOperation (::std::auto_ptr< webserviceOperation_type > p); - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:3567:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 3567 | maxCertainty (::std::auto_ptr< maxCertainty_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:17738:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -17738 | webserviceVersion (::std::auto_ptr< webserviceVersion_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:140:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 140 | species (::std::auto_ptr< species_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -5827,10 +4460,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:17817:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -17817 | webserviceDate (::std::auto_ptr< webserviceDate_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:170:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 170 | reference (::std::auto_ptr< reference_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -5838,25 +4470,22 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.cxx:41: -freecontact_input_xsd.hxx:723:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 723 | flat (::std::auto_ptr< flat_type > p); - | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.cxx:41: -freecontact_input_xsd.hxx:746:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 746 | FcAlignment (::std::auto_ptr< flat_type >); - | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:11206:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +11206 | certainty (::std::auto_ptr< certainty_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ @@ -5908,17 +4537,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.cxx:41: -freecontact_input_xsd.hxx:847:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 847 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:11745:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -5931,10 +4549,11 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.cxx:41: -freecontact_input_xsd.hxx:863:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 863 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:3877:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 3877 | pos (::std::auto_ptr< pos_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -5942,15 +4561,11 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.cxx:41: -freecontact_input_xsd.hxx:881:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 881 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:12003:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -12003 | max (::std::auto_ptr< max_type > p); - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:3935:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 3935 | bases (::std::auto_ptr< bases_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -5958,17 +4573,21 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:200:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 200 | name (::std::auto_ptr< name_type > x) + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:4110:36: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4110 | localAlignmentPosition (::std::auto_ptr< localAlignmentPosition_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.cxx:41: -freecontact_input_xsd.hxx:897:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 897 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -5976,22 +4595,23 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:12061:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -12061 | certainty (::std::auto_ptr< certainty_type > p); - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:4186:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4186 | sequenceRecord (::std::auto_ptr< sequenceRecord_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.cxx:41: -freecontact_input_xsd.hxx:913:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 913 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:4262:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4262 | sequenceReference (::std::auto_ptr< sequenceReference_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -5999,10 +4619,11 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.cxx:41: -freecontact_input_xsd.hxx:931:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 931 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:4338:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4338 | sequenceName (::std::auto_ptr< sequenceName_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -6010,10 +4631,21 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.cxx:41: -freecontact_input_xsd.hxx:951:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 951 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:230:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 230 | note (::std::auto_ptr< note_type > x) + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:4414:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4414 | species (::std::auto_ptr< species_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -6021,10 +4653,11 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.cxx:41: -freecontact_input_xsd.hxx:973:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 973 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:4490:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4490 | genomeBuild (::std::auto_ptr< genomeBuild_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -6032,10 +4665,11 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.cxx:41: -freecontact_input_xsd.hxx:996:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 996 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:4566:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4566 | chromosome (::std::auto_ptr< chromosome_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -6043,10 +4677,11 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.cxx:41: -freecontact_input_xsd.hxx:1013:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 1013 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:4644:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4644 | subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -6054,10 +4689,11 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.cxx:41: -freecontact_input_xsd.hxx:1029:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 1029 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:4720:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4720 | variantAccession (::std::auto_ptr< variantAccession_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -6065,10 +4701,11 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.cxx:41: -freecontact_input_xsd.hxx:1047:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 1047 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:4796:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4796 | variantNote (::std::auto_ptr< variantNote_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -6076,10 +4713,45 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.cxx:41: -freecontact_input_xsd.hxx:1061:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 1061 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:12003:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +12003 | max (::std::auto_ptr< max_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:12061:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +12061 | certainty (::std::auto_ptr< certainty_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:260:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 260 | translationData (::std::auto_ptr< translationData_type > x) + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:5064:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 5064 | reversedDirection (::std::auto_ptr< reversedDirection_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -6087,10 +4759,41 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.cxx:41: -freecontact_input_xsd.hxx:1078:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 1078 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:290:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 290 | inlineBaseQuality (::std::auto_ptr< inlineBaseQuality_type > x) + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:376:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 376 | note (::std::auto_ptr< note_type > x) + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:420:15: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 420 | pos (::std::auto_ptr< pos_type > x) + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:5589:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 5589 | name (::std::auto_ptr< name_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -6110,11 +4813,46 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:444:15: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 444 | len (::std::auto_ptr< len_type > x) + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:478:15: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 478 | min (::std::auto_ptr< min_type > x) + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:508:15: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 508 | max (::std::auto_ptr< max_type > x) + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:12517:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 12517 | nextPoint (::std::auto_ptr< nextPoint_type > p); | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:5798:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 5798 | className (::std::auto_ptr< className_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -6122,6 +4860,37 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:5938:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 5938 | properties (::std::auto_ptr< properties_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:6115:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 6115 | specificFeatureName (::std::auto_ptr< specificFeatureName_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:12593:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -6134,6 +4903,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:538:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 538 | strand (::std::auto_ptr< strand_type > x) + | ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:12669:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -6141,6 +4913,13 @@ | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here @@ -6170,6 +4949,118 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:6385:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 6385 | note (::std::auto_ptr< note_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:562:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 562 | minCertainty (::std::auto_ptr< minCertainty_type > x) + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:592:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 592 | maxCertainty (::std::auto_ptr< maxCertainty_type > x) + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:634:15: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 634 | pos (::std::auto_ptr< pos_type > x) + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:6627:36: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 6627 | appliesToWholeSequence (::std::auto_ptr< appliesToWholeSequence_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:658:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 658 | bases (::std::auto_ptr< bases_type > x) + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:6703:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 6703 | position (::std::auto_ptr< position_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:6843:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 6843 | occurrenceName (::std::auto_ptr< occurrenceName_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:6919:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 6919 | occurrenceNote (::std::auto_ptr< occurrenceNote_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:6995:32: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 6995 | featureTypeDetails (::std::auto_ptr< featureTypeDetails_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:13071:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -6182,6 +5073,36 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:692:34: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 692 | localAlignmentPosition (::std::auto_ptr< localAlignmentPosition_type > x) + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:722:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 722 | sequenceRecord (::std::auto_ptr< sequenceRecord_type > x) + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:752:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 752 | sequenceReference (::std::auto_ptr< sequenceReference_type > x) + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:13211:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -6194,6 +5115,62 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:7203:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 7203 | frame (::std::auto_ptr< frame_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:7279:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 7279 | phase (::std::auto_ptr< phase_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:7419:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 7419 | alignment (::std::auto_ptr< alignment_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:782:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 782 | sequenceName (::std::auto_ptr< sequenceName_type > x) + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:812:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 812 | species (::std::auto_ptr< species_type > x) + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:13351:39: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -6206,9 +5183,43 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx:67:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 67 | flat (::std::auto_ptr< flat_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:842:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 842 | genomeBuild (::std::auto_ptr< genomeBuild_type > x) + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:872:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 872 | chromosome (::std::auto_ptr< chromosome_type > x) + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:7588:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 7588 | referenceSequence (::std::auto_ptr< referenceSequence_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:7742:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 7742 | FeatureRecord (::std::auto_ptr< referenceSequence_type >); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -6228,6 +5239,30 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:7901:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 7901 | predicted (::std::auto_ptr< predicted_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:7977:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 7977 | experimental (::std::auto_ptr< experimental_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:13832:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -6245,6 +5280,11 @@ BioXSD-1.1_xsd.hxx:13908:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 13908 | phase (::std::auto_ptr< phase_type > p); | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:8130:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 8130 | method (::std::auto_ptr< method_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -6252,6 +5292,13 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:13984:42: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -6264,6 +5311,72 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:8217:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 8217 | MethodResult (::std::auto_ptr< method_type >); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:902:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 902 | subsequencePosition (::std::auto_ptr< subsequencePosition_type > x) + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:932:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 932 | variantAccession (::std::auto_ptr< variantAccession_type > x) + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:962:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 962 | variantNote (::std::auto_ptr< variantNote_type > x) + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:8357:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 8357 | methodIdRef (::std::auto_ptr< methodIdRef_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:8444:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 8444 | Result (::std::auto_ptr< methodIdRef_type >); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:14226:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -6300,6 +5413,18 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:8602:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 8602 | method (::std::auto_ptr< method_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:14511:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -6312,14 +5437,15 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:22916:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -22916 | relationName (::std::auto_ptr< relationName_type > p); - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:8678:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 8678 | methodIdRef (::std::auto_ptr< methodIdRef_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ @@ -6340,6 +5466,11 @@ BioXSD-1.1_xsd.hxx:14663:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 14663 | wsdlPort (::std::auto_ptr< wsdlPort_type > p); | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:8818:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 8818 | verdict (::std::auto_ptr< verdict_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -6347,6 +5478,13 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:14739:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -6371,6 +5509,84 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:1046:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 1046 | reversedDirection (::std::auto_ptr< reversedDirection_type > x) + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:1114:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 1114 | name (::std::auto_ptr< name_type > x) + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:8973:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 8973 | dataReference (::std::auto_ptr< dataReference_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:1180:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 1180 | className (::std::auto_ptr< className_type > x) + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:9113:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 9113 | verdict (::std::auto_ptr< verdict_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:9189:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 9189 | reliability (::std::auto_ptr< reliability_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:9212:34: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 9212 | ExperimentalEvidence (::std::auto_ptr< dataReference_type >); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:14894:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -6383,10 +5599,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:23505:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -23505 | canonicalVariant (::std::auto_ptr< canonicalVariant_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:1228:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 1228 | properties (::std::auto_ptr< properties_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -6394,6 +5609,96 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:9566:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 9566 | name (::std::auto_ptr< name_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:9642:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 9642 | index (::std::auto_ptr< index_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:1262:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 1262 | specificFeatureName (::std::auto_ptr< specificFeatureName_type > x) + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:9718:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 9718 | unit (::std::auto_ptr< unit_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:9794:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 9794 | note (::std::auto_ptr< note_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:1346:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 1346 | note (::std::auto_ptr< note_type > x) + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:1398:34: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 1398 | appliesToWholeSequence (::std::auto_ptr< appliesToWholeSequence_type > x) + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:9974:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 9974 | position (::std::auto_ptr< position_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:15075:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -6442,28 +5747,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:23645:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -23645 | missing (::std::auto_ptr< missing_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:23787:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -23787 | position (::std::auto_ptr< position_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:15481:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -6500,34 +5783,71 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:23961:34: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -23961 | alignmentOfReference (::std::auto_ptr< alignmentOfReference_type > p); - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:10032:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +10032 | value (::std::auto_ptr< value_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:24019:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -24019 | alignedSequence (::std::auto_ptr< alignedSequence_type > p); - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:10108:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +10108 | scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:24042:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -24042 | alignment (::std::auto_ptr< alignedSequence_type >); +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:10285:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +10285 | pos (::std::auto_ptr< pos_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:10361:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +10361 | strand (::std::auto_ptr< strand_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:10419:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +10419 | certainty (::std::auto_ptr< certainty_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:1428:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 1428 | position (::std::auto_ptr< position_type > x) + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here @@ -6569,21 +5889,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:24200:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -24200 | sequenceRecord (::std::auto_ptr< sequenceRecord_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:24276:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -24276 | sequenceReference (::std::auto_ptr< sequenceReference_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:1476:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 1476 | occurrenceName (::std::auto_ptr< occurrenceName_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -6591,9 +5899,8 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:24352:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -24352 | sequenceName (::std::auto_ptr< sequenceName_type > p); +BioXSD-1.1_xsd.cxx:1506:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 1506 | occurrenceNote (::std::auto_ptr< occurrenceNote_type > x) | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -6614,17 +5921,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:24428:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -24428 | species (::std::auto_ptr< species_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:16283:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -6637,32 +5933,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:24504:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -24504 | genomeBuild (::std::auto_ptr< genomeBuild_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:24580:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -24580 | chromosome (::std::auto_ptr< chromosome_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:24658:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -24658 | subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:1536:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 1536 | featureTypeDetails (::std::auto_ptr< featureTypeDetails_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -6670,10 +5943,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:24734:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -24734 | variantAccession (::std::auto_ptr< variantAccession_type > p); - | ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:16459:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -6681,29 +5950,11 @@ | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:24810:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -24810 | variantNote (::std::auto_ptr< variantNote_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:16538:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -6752,17 +6003,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:24970:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -24970 | feature (::std::auto_ptr< feature_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:16845:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -6775,28 +6015,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:25046:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -25046 | condensedReferences (::std::auto_ptr< condensedReferences_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:25133:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -25133 | annotation (::std::auto_ptr< feature_type >); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:1602:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 1602 | frame (::std::auto_ptr< frame_type > x) + | ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:17130:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -6845,6 +6066,33 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:1632:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 1632 | phase (::std::auto_ptr< phase_type > x) + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:1680:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 1680 | alignment (::std::auto_ptr< alignment_type > x) + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:17434:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -6917,9 +6165,18 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:25778:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -25778 | localId (::std::auto_ptr< localId_type > p); +BioXSD-1.1_xsd.cxx:1708:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 1708 | referenceSequence (::std::auto_ptr< referenceSequence_type > x) + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:1778:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 1778 | predicted (::std::auto_ptr< predicted_type > x) | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -6928,9 +6185,78 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:25932:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -25932 | code (::std::auto_ptr< code_type > p); +BioXSD-1.1_xsd.cxx:1808:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 1808 | experimental (::std::auto_ptr< experimental_type > x) + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:10679:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +10679 | pos (::std::auto_ptr< pos_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:10755:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +10755 | strand (::std::auto_ptr< strand_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:10813:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +10813 | certainty (::std::auto_ptr< certainty_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:11072:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +11072 | pos (::std::auto_ptr< pos_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:11148:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +11148 | strand (::std::auto_ptr< strand_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:1836:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 1836 | method (::std::auto_ptr< method_type > x) | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -6939,9 +6265,20 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:26122:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -26122 | aminoacid (::std::auto_ptr< aminoacid_type > p); +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:11206:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +11206 | certainty (::std::auto_ptr< certainty_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:1882:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 1882 | methodIdRef (::std::auto_ptr< methodIdRef_type > x) | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -6950,9 +6287,56 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:26253:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -26253 | note (::std::auto_ptr< note_type > p); +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:11465:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +11465 | min (::std::auto_ptr< min_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:11544:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +11544 | max (::std::auto_ptr< max_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:11620:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +11620 | strand (::std::auto_ptr< strand_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:11678:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +11678 | minCertainty (::std::auto_ptr< minCertainty_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:1934:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 1934 | method (::std::auto_ptr< method_type > x) | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -6961,10 +6345,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:26781:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -26781 | method (::std::auto_ptr< method_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:1964:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 1964 | methodIdRef (::std::auto_ptr< methodIdRef_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -6972,10 +6355,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:26857:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -26857 | ontology (::std::auto_ptr< ontology_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2012:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 2012 | verdict (::std::auto_ptr< verdict_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -6983,10 +6365,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:26933:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -26933 | database (::std::auto_ptr< database_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2040:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 2040 | dataReference (::std::auto_ptr< dataReference_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -6994,9 +6375,18 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:27009:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -27009 | scoreType (::std::auto_ptr< scoreType_type > p); +BioXSD-1.1_xsd.cxx:2088:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 2088 | verdict (::std::auto_ptr< verdict_type > x) + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2118:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 2118 | reliability (::std::auto_ptr< reliability_type > x) | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -7005,10 +6395,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:27164:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -27164 | localId (::std::auto_ptr< localId_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2206:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 2206 | name (::std::auto_ptr< name_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7016,10 +6405,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:27316:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -27316 | localId (::std::auto_ptr< localId_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2236:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 2236 | index (::std::auto_ptr< index_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7027,10 +6415,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:27468:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -27468 | localId (::std::auto_ptr< localId_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2266:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 2266 | unit (::std::auto_ptr< unit_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7038,10 +6425,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:27620:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -27620 | localId (::std::auto_ptr< localId_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2296:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 2296 | note (::std::auto_ptr< note_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7049,10 +6435,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:27773:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -27773 | localId (::std::auto_ptr< localId_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2330:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 2330 | position (::std::auto_ptr< position_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7060,10 +6445,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:27925:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -27925 | feature (::std::auto_ptr< feature_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2354:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 2354 | value (::std::auto_ptr< value_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7071,10 +6455,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:28001:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -28001 | condensedReferences (::std::auto_ptr< condensedReferences_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2384:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 2384 | scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7082,10 +6465,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:28088:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -28088 | annotation1 (::std::auto_ptr< feature_type >); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2418:15: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 2418 | pos (::std::auto_ptr< pos_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7093,10 +6475,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:28471:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -28471 | method (::std::auto_ptr< method_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2448:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 2448 | strand (::std::auto_ptr< strand_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7104,10 +6485,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:28547:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -28547 | methodIdRef (::std::auto_ptr< methodIdRef_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2472:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 2472 | certainty (::std::auto_ptr< certainty_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7115,10 +6495,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:28623:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -28623 | ontology (::std::auto_ptr< ontology_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2516:15: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 2516 | pos (::std::auto_ptr< pos_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7126,10 +6505,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:28699:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -28699 | ontologyIdRef (::std::auto_ptr< ontologyIdRef_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2546:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 2546 | strand (::std::auto_ptr< strand_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7137,10 +6515,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:28775:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -28775 | database (::std::auto_ptr< database_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2570:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 2570 | certainty (::std::auto_ptr< certainty_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7148,10 +6525,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:28851:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -28851 | databaseIdRef (::std::auto_ptr< databaseIdRef_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2614:15: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 2614 | pos (::std::auto_ptr< pos_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7159,10 +6535,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:28927:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -28927 | scoreType (::std::auto_ptr< scoreType_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2644:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 2644 | strand (::std::auto_ptr< strand_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7170,10 +6545,19 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:29003:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -29003 | scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > p); +BioXSD-1.1_xsd.cxx:2668:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 2668 | certainty (::std::auto_ptr< certainty_type > x) + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2712:15: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 2712 | min (::std::auto_ptr< min_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7181,10 +6565,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:29244:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -29244 | localId (::std::auto_ptr< localId_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2742:15: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 2742 | max (::std::auto_ptr< max_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7192,10 +6575,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:29415:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -29415 | relationName (::std::auto_ptr< relationName_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2772:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 2772 | strand (::std::auto_ptr< strand_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7203,9 +6585,8 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:29826:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -29826 | localIdRef (::std::auto_ptr< localIdRef_type > p); +BioXSD-1.1_xsd.cxx:2796:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 2796 | minCertainty (::std::auto_ptr< minCertainty_type > x) | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -7226,6 +6607,96 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2826:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 2826 | maxCertainty (::std::auto_ptr< maxCertainty_type > x) + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2870:15: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 2870 | max (::std::auto_ptr< max_type > x) + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2894:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 2894 | certainty (::std::auto_ptr< certainty_type > x) + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2956:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 2956 | insertion (::std::auto_ptr< insertion_type > x) + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3004:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 3004 | nextPoint (::std::auto_ptr< nextPoint_type > x) + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3034:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 3034 | nextPartition (::std::auto_ptr< nextPartition_type > x) + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3064:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 3064 | samePoint (::std::auto_ptr< samePoint_type > x) + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3094:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 3094 | samePartition (::std::auto_ptr< samePartition_type > x) + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3124:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 3124 | outside (::std::auto_ptr< outside_type > x) + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:23505:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -7262,6 +6733,62 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:11745:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +11745 | maxCertainty (::std::auto_ptr< maxCertainty_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3162:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 3162 | correspondance (::std::auto_ptr< correspondance_type > x) + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:12003:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +12003 | max (::std::auto_ptr< max_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:12061:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +12061 | certainty (::std::auto_ptr< certainty_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3210:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 3210 | insertion (::std::auto_ptr< insertion_type > x) + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:23961:34: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -7370,6 +6897,49 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3258:37: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 3258 | explicitSequenceReference (::std::auto_ptr< explicitSequenceReference_type > x) + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3296:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 3296 | reference (::std::auto_ptr< reference_type > x) + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3348:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 3348 | geneticCode (::std::auto_ptr< geneticCode_type > x) + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3378:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 3378 | phase (::std::auto_ptr< phase_type > x) + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3408:40: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 3408 | reversedTranslationDirection (::std::auto_ptr< reversedTranslationDirection_type > x) + | ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:24658:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -7430,16 +7000,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:110:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 110 | sequence (::std::auto_ptr< sequence_type > x) - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:25133:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -7452,9 +7012,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:140:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 140 | species (::std::auto_ptr< species_type > x) - | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7462,9 +7019,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:170:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 170 | reference (::std::auto_ptr< reference_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3446:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 3446 | dbName (::std::auto_ptr< dbName_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7472,9 +7029,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:200:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 200 | name (::std::auto_ptr< name_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3476:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 3476 | dbUri (::std::auto_ptr< dbUri_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7482,8 +7039,18 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:230:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 230 | note (::std::auto_ptr< note_type > x) +BioXSD-1.1_xsd.cxx:3506:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 3506 | dbVersion (::std::auto_ptr< dbVersion_type > x) + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3560:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 3560 | wsdl (::std::auto_ptr< wsdl_type > x) | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -7492,9 +7059,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:260:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 260 | translationData (::std::auto_ptr< translationData_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3590:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 3590 | wsdlService (::std::auto_ptr< wsdlService_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7502,9 +7069,33 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:290:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 290 | inlineBaseQuality (::std::auto_ptr< inlineBaseQuality_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:12377:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +12377 | insertion (::std::auto_ptr< insertion_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:25778:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +25778 | localId (::std::auto_ptr< localId_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3620:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 3620 | wsdlPort (::std::auto_ptr< wsdlPort_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7512,9 +7103,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:376:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 376 | note (::std::auto_ptr< note_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3650:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 3650 | webserviceOperation (::std::auto_ptr< webserviceOperation_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7522,9 +7113,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:420:15: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 420 | pos (::std::auto_ptr< pos_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3680:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 3680 | webserviceVersion (::std::auto_ptr< webserviceVersion_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7532,9 +7123,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:444:15: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 444 | len (::std::auto_ptr< len_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3710:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 3710 | webserviceDate (::std::auto_ptr< webserviceDate_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7542,9 +7133,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:478:15: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 478 | min (::std::auto_ptr< min_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3744:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 3744 | accession (::std::auto_ptr< accession_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7552,9 +7143,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:508:15: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 508 | max (::std::auto_ptr< max_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3774:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 3774 | entryUri (::std::auto_ptr< entryUri_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7562,31 +7153,29 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx:97:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 97 | FcAlignment (::std::auto_ptr< flat_type > flat) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3804:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 3804 | entryVersion (::std::auto_ptr< entryVersion_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:25778:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -25778 | localId (::std::auto_ptr< localId_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3834:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 3834 | date (::std::auto_ptr< date_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:538:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 538 | strand (::std::auto_ptr< strand_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3868:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 3868 | ontologyName (::std::auto_ptr< ontologyName_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7606,16 +7195,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:562:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 562 | minCertainty (::std::auto_ptr< minCertainty_type > x) - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:26122:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -7628,6 +7207,18 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:12517:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +12517 | nextPoint (::std::auto_ptr< nextPoint_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:26253:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -7640,30 +7231,23 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:592:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 592 | maxCertainty (::std::auto_ptr< maxCertainty_type > x) - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:634:15: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 634 | pos (::std::auto_ptr< pos_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:12593:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +12593 | nextPartition (::std::auto_ptr< nextPartition_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx: In member function 'void freecontact_input_xsd::FcAlignment::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -freecontact_input_xsd.cxx:139:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 139 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:12669:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +12669 | samePoint (::std::auto_ptr< samePoint_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -7671,23 +7255,27 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:658:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 658 | bases (::std::auto_ptr< bases_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:12745:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +12745 | samePartition (::std::auto_ptr< samePartition_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:692:34: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 692 | localAlignmentPosition (::std::auto_ptr< localAlignmentPosition_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:12821:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +12821 | outside (::std::auto_ptr< outside_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ @@ -7727,16 +7315,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:722:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 722 | sequenceRecord (::std::auto_ptr< sequenceRecord_type > x) - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:27009:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -7749,9 +7327,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:752:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 752 | sequenceReference (::std::auto_ptr< sequenceReference_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3898:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 3898 | ontologyUri (::std::auto_ptr< ontologyUri_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7759,9 +7337,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:782:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 782 | sequenceName (::std::auto_ptr< sequenceName_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3928:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 3928 | ontologyVersion (::std::auto_ptr< ontologyVersion_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7769,9 +7347,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:812:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 812 | species (::std::auto_ptr< species_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3986:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 3986 | accession (::std::auto_ptr< accession_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7779,21 +7357,19 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:27164:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -27164 | localId (::std::auto_ptr< localId_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4016:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4016 | conceptUri (::std::auto_ptr< conceptUri_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:842:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 842 | genomeBuild (::std::auto_ptr< genomeBuild_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4046:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4046 | term (::std::auto_ptr< term_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7803,6 +7379,18 @@ | ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:27164:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +27164 | localId (::std::auto_ptr< localId_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:27316:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 27316 | localId (::std::auto_ptr< localId_type > p); | ^~~~~~~~ @@ -7813,13 +7401,15 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:872:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 872 | chromosome (::std::auto_ptr< chromosome_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:13071:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +13071 | correspondance (::std::auto_ptr< correspondance_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ @@ -7835,16 +7425,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:902:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 902 | subsequencePosition (::std::auto_ptr< subsequencePosition_type > x) - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:27620:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -7869,9 +7449,19 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:932:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 932 | variantAccession (::std::auto_ptr< variantAccession_type > x) +BioXSD-1.1_xsd.cxx:4080:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4080 | speciesName (::std::auto_ptr< speciesName_type > x) + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4110:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4110 | speciesNote (::std::auto_ptr< speciesNote_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7879,21 +7469,49 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:27925:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -27925 | feature (::std::auto_ptr< feature_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4144:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4144 | subsequencePosition (::std::auto_ptr< subsequencePosition_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:962:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 962 | variantNote (::std::auto_ptr< variantNote_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4174:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4174 | supersequence (::std::auto_ptr< supersequence_type > x) + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4204:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4204 | supersequenceName (::std::auto_ptr< supersequenceName_type > x) + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4234:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4234 | sequenceVersion (::std::auto_ptr< sequenceVersion_type > x) + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4264:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4264 | variantAccession (::std::auto_ptr< variantAccession_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7903,9 +7521,9 @@ | ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:28001:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -28001 | condensedReferences (::std::auto_ptr< condensedReferences_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:27925:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +27925 | feature (::std::auto_ptr< feature_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -7913,13 +7531,15 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1046:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 1046 | reversedDirection (::std::auto_ptr< reversedDirection_type > x) - | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:28001:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +28001 | condensedReferences (::std::auto_ptr< condensedReferences_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ @@ -7935,8 +7555,30 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1114:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 1114 | name (::std::auto_ptr< name_type > x) +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:13211:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +13211 | insertion (::std::auto_ptr< insertion_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4294:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4294 | variantNote (::std::auto_ptr< variantNote_type > x) + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4358:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4358 | name (::std::auto_ptr< name_type > x) | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -7945,9 +7587,21 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1180:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 1180 | className (::std::auto_ptr< className_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:13351:39: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +13351 | explicitSequenceReference (::std::auto_ptr< explicitSequenceReference_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4388:15: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4388 | uri (::std::auto_ptr< uri_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7955,9 +7609,19 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1228:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 1228 | properties (::std::auto_ptr< properties_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4418:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4418 | version (::std::auto_ptr< version_type > x) + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4448:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4448 | date (::std::auto_ptr< date_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -8001,9 +7665,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1262:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 1262 | specificFeatureName (::std::auto_ptr< specificFeatureName_type > x) - | ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:28699:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -8011,13 +7672,6 @@ | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here @@ -8059,16 +7713,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1346:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 1346 | note (::std::auto_ptr< note_type > x) - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:29003:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -8081,9 +7725,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1398:34: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 1398 | appliesToWholeSequence (::std::auto_ptr< appliesToWholeSequence_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4478:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4478 | wsdl (::std::auto_ptr< wsdl_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -8091,8 +7735,18 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1428:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 1428 | position (::std::auto_ptr< position_type > x) +BioXSD-1.1_xsd.cxx:4508:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4508 | wsdlService (::std::auto_ptr< wsdlService_type > x) + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4538:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4538 | wsdlPort (::std::auto_ptr< wsdlPort_type > x) | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -8101,9 +7755,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1476:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 1476 | occurrenceName (::std::auto_ptr< occurrenceName_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4568:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4568 | webserviceOperation (::std::auto_ptr< webserviceOperation_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -8111,20 +7765,18 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:29244:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -29244 | localId (::std::auto_ptr< localId_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4598:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4598 | webserviceVersion (::std::auto_ptr< webserviceVersion_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1506:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 1506 | occurrenceNote (::std::auto_ptr< occurrenceNote_type > x) +BioXSD-1.1_xsd.cxx:4628:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4628 | webserviceDate (::std::auto_ptr< webserviceDate_type > x) | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -8133,21 +7785,35 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1536:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 1536 | featureTypeDetails (::std::auto_ptr< featureTypeDetails_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:13597:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +13597 | reference (::std::auto_ptr< reference_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:29415:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -29415 | relationName (::std::auto_ptr< relationName_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:29244:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +29244 | localId (::std::auto_ptr< localId_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:29415:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +29415 | relationName (::std::auto_ptr< relationName_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -8155,23 +7821,27 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1602:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 1602 | frame (::std::auto_ptr< frame_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:13832:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +13832 | geneticCode (::std::auto_ptr< geneticCode_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1632:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 1632 | phase (::std::auto_ptr< phase_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:13908:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +13908 | phase (::std::auto_ptr< phase_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ @@ -8187,18 +7857,22 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1680:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 1680 | alignment (::std::auto_ptr< alignment_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:13984:42: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +13984 | reversedTranslationDirection (::std::auto_ptr< reversedTranslationDirection_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx:150:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 150 | ::std::auto_ptr< flat_type > r ( +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:14226:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +14226 | dbName (::std::auto_ptr< dbName_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -8207,40 +7881,35 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1708:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 1708 | referenceSequence (::std::auto_ptr< referenceSequence_type > x) - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1778:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 1778 | predicted (::std::auto_ptr< predicted_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:14304:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +14304 | dbUri (::std::auto_ptr< dbUri_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1808:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 1808 | experimental (::std::auto_ptr< experimental_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:14380:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +14380 | dbVersion (::std::auto_ptr< dbVersion_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx: At global scope: -freecontact_input_xsd.cxx:212:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 212 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:14511:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +14511 | wsdl (::std::auto_ptr< wsdl_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -8248,23 +7917,27 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1836:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 1836 | method (::std::auto_ptr< method_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:14587:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +14587 | wsdlService (::std::auto_ptr< wsdlService_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1882:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 1882 | methodIdRef (::std::auto_ptr< methodIdRef_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:14663:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +14663 | wsdlPort (::std::auto_ptr< wsdlPort_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ @@ -8422,9 +8095,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1934:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 1934 | method (::std::auto_ptr< method_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:5311:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 5311 | relationName (::std::auto_ptr< relationName_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -8432,9 +8105,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1964:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 1964 | methodIdRef (::std::auto_ptr< methodIdRef_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:5439:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 5439 | canonicalVariant (::std::auto_ptr< canonicalVariant_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -8442,19 +8115,8 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(const string&, xml_schema::flags, const properties&)': -freecontact_input_xsd.cxx:229:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 229 | return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2012:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 2012 | verdict (::std::auto_ptr< verdict_type > x) +BioXSD-1.1_xsd.cxx:5487:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 5487 | missing (::std::auto_ptr< missing_type > x) | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -8463,9 +8125,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2040:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 2040 | dataReference (::std::auto_ptr< dataReference_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:5535:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 5535 | position (::std::auto_ptr< position_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -8473,20 +8135,19 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx: At global scope: -freecontact_input_xsd.cxx:234:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 234 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:5569:32: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 5569 | alignmentOfReference (::std::auto_ptr< alignmentOfReference_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2088:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 2088 | verdict (::std::auto_ptr< verdict_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:5593:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 5593 | alignedSequence (::std::auto_ptr< alignedSequence_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -8494,9 +8155,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2118:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 2118 | reliability (::std::auto_ptr< reliability_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:5627:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 5627 | sequenceRecord (::std::auto_ptr< sequenceRecord_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -8504,63 +8165,39 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(const string&, xml_schema::error_handler&, xml_schema::flags, const properties&)': -freecontact_input_xsd.cxx:251:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 251 | return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:5657:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 5657 | sequenceReference (::std::auto_ptr< sequenceReference_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx: At global scope: -freecontact_input_xsd.cxx:256:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 256 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:5687:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 5687 | sequenceName (::std::auto_ptr< sequenceName_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(const string&, xercesc_3_2::DOMErrorHandler&, xml_schema::flags, const properties&)': -freecontact_input_xsd.cxx:269:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 269 | return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( +BioXSD-1.1_xsd.cxx:5717:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 5717 | species (::std::auto_ptr< species_type > x) | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2206:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 2206 | name (::std::auto_ptr< name_type > x) - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx: At global scope: -freecontact_input_xsd.cxx:274:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 274 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2236:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 2236 | index (::std::auto_ptr< index_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:5747:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 5747 | genomeBuild (::std::auto_ptr< genomeBuild_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -8568,19 +8205,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx:287:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 287 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2266:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 2266 | unit (::std::auto_ptr< unit_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:5777:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 5777 | chromosome (::std::auto_ptr< chromosome_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -8588,9 +8215,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2296:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 2296 | note (::std::auto_ptr< note_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:5807:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 5807 | subsequencePosition (::std::auto_ptr< subsequencePosition_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -8598,156 +8225,39 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx:301:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 301 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -freecontact_input_xsd.cxx:311:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 311 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -freecontact_input_xsd.cxx:325:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 325 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -freecontact_input_xsd.cxx:340:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 340 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -freecontact_input_xsd.cxx:351:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 351 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(xercesc_3_2::InputSource&, xml_schema::flags, const properties&)': -freecontact_input_xsd.cxx:364:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 364 | return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -freecontact_input_xsd.cxx: At global scope: -freecontact_input_xsd.cxx:369:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 369 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; +BioXSD-1.1_xsd.cxx:5837:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 5837 | variantAccession (::std::auto_ptr< variantAccession_type > x) | ^~~~~~~~ -freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(xercesc_3_2::InputSource&, xml_schema::error_handler&, xml_schema::flags, const properties&)': -freecontact_input_xsd.cxx:382:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 382 | return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( - | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx: At global scope: -freecontact_input_xsd.cxx:387:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 387 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:5867:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 5867 | variantNote (::std::auto_ptr< variantNote_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(xercesc_3_2::InputSource&, xercesc_3_2::DOMErrorHandler&, xml_schema::flags, const properties&)': -freecontact_input_xsd.cxx:400:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 400 | return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( +BioXSD-1.1_xsd.cxx:5895:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 5895 | feature (::std::auto_ptr< feature_type > x) | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -freecontact_input_xsd.cxx: At global scope: -freecontact_input_xsd.cxx:405:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 405 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(const xercesc_3_2::DOMDocument&, xml_schema::flags, const properties&)': -freecontact_input_xsd.cxx:415:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 415 | return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -freecontact_input_xsd.cxx:424:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 424 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -freecontact_input_xsd.cxx:433:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 433 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > r ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2330:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 2330 | position (::std::auto_ptr< position_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:5925:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 5925 | condensedReferences (::std::auto_ptr< condensedReferences_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -8755,9 +8265,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2354:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 2354 | value (::std::auto_ptr< value_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:6089:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 6089 | localId (::std::auto_ptr< localId_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -8765,20 +8275,19 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx: At global scope: -freecontact_input_xsd.cxx:451:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 451 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:6117:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 6117 | code (::std::auto_ptr< code_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2384:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 2384 | scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:6195:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 6195 | aminoacid (::std::auto_ptr< aminoacid_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -8786,20 +8295,19 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(xsd::cxx::xml::dom::auto_ptr, xml_schema::flags, const properties&)': -freecontact_input_xsd.cxx:473:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 473 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:6249:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 6249 | note (::std::auto_ptr< note_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2418:15: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 2418 | pos (::std::auto_ptr< pos_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:6359:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 6359 | method (::std::auto_ptr< method_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -8807,19 +8315,19 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx:483:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 483 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > r ( - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:6389:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 6389 | ontology (::std::auto_ptr< ontology_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2448:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 2448 | strand (::std::auto_ptr< strand_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:6419:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 6419 | database (::std::auto_ptr< database_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -8827,8 +8335,8 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2472:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 2472 | certainty (::std::auto_ptr< certainty_type > x) +BioXSD-1.1_xsd.cxx:6449:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 6449 | scoreType (::std::auto_ptr< scoreType_type > x) | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -8837,9 +8345,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2516:15: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 2516 | pos (::std::auto_ptr< pos_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:6477:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 6477 | localId (::std::auto_ptr< localId_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -8847,9 +8355,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2546:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 2546 | strand (::std::auto_ptr< strand_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:6505:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 6505 | localId (::std::auto_ptr< localId_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -8857,9 +8365,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2570:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 2570 | certainty (::std::auto_ptr< certainty_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:6533:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 6533 | localId (::std::auto_ptr< localId_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -8867,9 +8375,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2614:15: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 2614 | pos (::std::auto_ptr< pos_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:6561:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 6561 | localId (::std::auto_ptr< localId_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -8877,9 +8385,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2644:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 2644 | strand (::std::auto_ptr< strand_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:6589:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 6589 | localId (::std::auto_ptr< localId_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -8887,459 +8395,597 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2668:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 2668 | certainty (::std::auto_ptr< certainty_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:14739:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +14739 | webserviceOperation (::std::auto_ptr< webserviceOperation_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2712:15: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 2712 | min (::std::auto_ptr< min_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:14815:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +14815 | webserviceVersion (::std::auto_ptr< webserviceVersion_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2742:15: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 2742 | max (::std::auto_ptr< max_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:14894:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +14894 | webserviceDate (::std::auto_ptr< webserviceDate_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2772:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 2772 | strand (::std::auto_ptr< strand_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:15075:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +15075 | accession (::std::auto_ptr< accession_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2796:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 2796 | minCertainty (::std::auto_ptr< minCertainty_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:15151:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +15151 | entryUri (::std::auto_ptr< entryUri_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2826:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 2826 | maxCertainty (::std::auto_ptr< maxCertainty_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:15227:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +15227 | entryVersion (::std::auto_ptr< entryVersion_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2870:15: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 2870 | max (::std::auto_ptr< max_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:15305:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +15305 | date (::std::auto_ptr< date_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2894:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 2894 | certainty (::std::auto_ptr< certainty_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:15481:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +15481 | ontologyName (::std::auto_ptr< ontologyName_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2956:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 2956 | insertion (::std::auto_ptr< insertion_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:15559:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +15559 | ontologyUri (::std::auto_ptr< ontologyUri_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3004:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 3004 | nextPoint (::std::auto_ptr< nextPoint_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:15635:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +15635 | ontologyVersion (::std::auto_ptr< ontologyVersion_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3034:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 3034 | nextPartition (::std::auto_ptr< nextPartition_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:15870:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +15870 | accession (::std::auto_ptr< accession_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3064:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 3064 | samePoint (::std::auto_ptr< samePoint_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:15946:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +15946 | conceptUri (::std::auto_ptr< conceptUri_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3094:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 3094 | samePartition (::std::auto_ptr< samePartition_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:16028:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +16028 | term (::std::auto_ptr< term_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3124:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 3124 | outside (::std::auto_ptr< outside_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:16207:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +16207 | speciesName (::std::auto_ptr< speciesName_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3162:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 3162 | correspondance (::std::auto_ptr< correspondance_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:16283:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +16283 | speciesNote (::std::auto_ptr< speciesNote_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3210:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 3210 | insertion (::std::auto_ptr< insertion_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:16459:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +16459 | subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3258:37: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 3258 | explicitSequenceReference (::std::auto_ptr< explicitSequenceReference_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:16538:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +16538 | supersequence (::std::auto_ptr< supersequence_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3296:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 3296 | reference (::std::auto_ptr< reference_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:16617:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +16617 | supersequenceName (::std::auto_ptr< supersequenceName_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3348:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 3348 | geneticCode (::std::auto_ptr< geneticCode_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:16693:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +16693 | sequenceVersion (::std::auto_ptr< sequenceVersion_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3378:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 3378 | phase (::std::auto_ptr< phase_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:16769:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +16769 | variantAccession (::std::auto_ptr< variantAccession_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3408:40: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 3408 | reversedTranslationDirection (::std::auto_ptr< reversedTranslationDirection_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:16845:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +16845 | variantNote (::std::auto_ptr< variantNote_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3446:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 3446 | dbName (::std::auto_ptr< dbName_type > x) +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:17130:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +17130 | name (::std::auto_ptr< name_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3476:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 3476 | dbUri (::std::auto_ptr< dbUri_type > x) +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:17206:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +17206 | uri (::std::auto_ptr< uri_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3506:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 3506 | dbVersion (::std::auto_ptr< dbVersion_type > x) +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:17282:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +17282 | version (::std::auto_ptr< version_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3560:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 3560 | wsdl (::std::auto_ptr< wsdl_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:17358:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +17358 | date (::std::auto_ptr< date_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3590:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 3590 | wsdlService (::std::auto_ptr< wsdlService_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:17434:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +17434 | wsdl (::std::auto_ptr< wsdl_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3620:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 3620 | wsdlPort (::std::auto_ptr< wsdlPort_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:17510:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +17510 | wsdlService (::std::auto_ptr< wsdlService_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3650:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 3650 | webserviceOperation (::std::auto_ptr< webserviceOperation_type > x) +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:17586:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +17586 | wsdlPort (::std::auto_ptr< wsdlPort_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:17662:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +17662 | webserviceOperation (::std::auto_ptr< webserviceOperation_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:17738:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +17738 | webserviceVersion (::std::auto_ptr< webserviceVersion_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3680:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 3680 | webserviceVersion (::std::auto_ptr< webserviceVersion_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:17817:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +17817 | webserviceDate (::std::auto_ptr< webserviceDate_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3710:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 3710 | webserviceDate (::std::auto_ptr< webserviceDate_type > x) +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:22916:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +22916 | relationName (::std::auto_ptr< relationName_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3744:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 3744 | accession (::std::auto_ptr< accession_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:23505:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +23505 | canonicalVariant (::std::auto_ptr< canonicalVariant_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3774:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 3774 | entryUri (::std::auto_ptr< entryUri_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:23645:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +23645 | missing (::std::auto_ptr< missing_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3804:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 3804 | entryVersion (::std::auto_ptr< entryVersion_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:23787:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +23787 | position (::std::auto_ptr< position_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3834:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 3834 | date (::std::auto_ptr< date_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:23961:34: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +23961 | alignmentOfReference (::std::auto_ptr< alignmentOfReference_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3868:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 3868 | ontologyName (::std::auto_ptr< ontologyName_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:24019:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +24019 | alignedSequence (::std::auto_ptr< alignedSequence_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3898:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 3898 | ontologyUri (::std::auto_ptr< ontologyUri_type > x) +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:24042:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +24042 | alignment (::std::auto_ptr< alignedSequence_type >); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3928:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 3928 | ontologyVersion (::std::auto_ptr< ontologyVersion_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:24200:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +24200 | sequenceRecord (::std::auto_ptr< sequenceRecord_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3986:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 3986 | accession (::std::auto_ptr< accession_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:24276:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +24276 | sequenceReference (::std::auto_ptr< sequenceReference_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4016:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4016 | conceptUri (::std::auto_ptr< conceptUri_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:24352:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +24352 | sequenceName (::std::auto_ptr< sequenceName_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4046:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4046 | term (::std::auto_ptr< term_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:24428:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +24428 | species (::std::auto_ptr< species_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4080:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4080 | speciesName (::std::auto_ptr< speciesName_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:24504:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +24504 | genomeBuild (::std::auto_ptr< genomeBuild_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4110:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4110 | speciesNote (::std::auto_ptr< speciesNote_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:24580:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +24580 | chromosome (::std::auto_ptr< chromosome_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4144:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4144 | subsequencePosition (::std::auto_ptr< subsequencePosition_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:24658:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +24658 | subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4174:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4174 | supersequence (::std::auto_ptr< supersequence_type > x) +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:24734:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +24734 | variantAccession (::std::auto_ptr< variantAccession_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:24810:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +24810 | variantNote (::std::auto_ptr< variantNote_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4204:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4204 | supersequenceName (::std::auto_ptr< supersequenceName_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:24970:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +24970 | feature (::std::auto_ptr< feature_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4234:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4234 | sequenceVersion (::std::auto_ptr< sequenceVersion_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:25046:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +25046 | condensedReferences (::std::auto_ptr< condensedReferences_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:6617:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 6617 | feature (::std::auto_ptr< feature_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -9347,9 +8993,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4264:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4264 | variantAccession (::std::auto_ptr< variantAccession_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:6647:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 6647 | condensedReferences (::std::auto_ptr< condensedReferences_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -9357,9 +9003,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4294:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4294 | variantNote (::std::auto_ptr< variantNote_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:6707:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 6707 | method (::std::auto_ptr< method_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -9367,9 +9013,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4358:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4358 | name (::std::auto_ptr< name_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:6737:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 6737 | methodIdRef (::std::auto_ptr< methodIdRef_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -9377,9 +9023,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4388:15: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4388 | uri (::std::auto_ptr< uri_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:6767:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 6767 | ontology (::std::auto_ptr< ontology_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -9387,9 +9033,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4418:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4418 | version (::std::auto_ptr< version_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:6797:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 6797 | ontologyIdRef (::std::auto_ptr< ontologyIdRef_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -9397,9 +9043,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4448:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4448 | date (::std::auto_ptr< date_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:6827:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 6827 | database (::std::auto_ptr< database_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -9407,9 +9053,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4478:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4478 | wsdl (::std::auto_ptr< wsdl_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:6857:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 6857 | databaseIdRef (::std::auto_ptr< databaseIdRef_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -9417,9 +9063,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4508:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4508 | wsdlService (::std::auto_ptr< wsdlService_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:6887:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 6887 | scoreType (::std::auto_ptr< scoreType_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -9427,9 +9073,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4538:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4538 | wsdlPort (::std::auto_ptr< wsdlPort_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:6917:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 6917 | scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -9437,9 +9083,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4568:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4568 | webserviceOperation (::std::auto_ptr< webserviceOperation_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:6969:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 6969 | localId (::std::auto_ptr< localId_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -9447,9 +9093,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4598:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4598 | webserviceVersion (::std::auto_ptr< webserviceVersion_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:7003:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 7003 | relationName (::std::auto_ptr< relationName_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -9457,9 +9103,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4628:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4628 | webserviceDate (::std::auto_ptr< webserviceDate_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:7103:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 7103 | localIdRef (::std::auto_ptr< localIdRef_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -9467,259 +9113,345 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:5311:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 5311 | relationName (::std::auto_ptr< relationName_type > x) +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:25133:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +25133 | annotation (::std::auto_ptr< feature_type >); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:5439:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 5439 | canonicalVariant (::std::auto_ptr< canonicalVariant_type > x) +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:25778:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +25778 | localId (::std::auto_ptr< localId_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:25932:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +25932 | code (::std::auto_ptr< code_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:5487:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 5487 | missing (::std::auto_ptr< missing_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:26122:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +26122 | aminoacid (::std::auto_ptr< aminoacid_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:5535:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 5535 | position (::std::auto_ptr< position_type > x) +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:26253:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +26253 | note (::std::auto_ptr< note_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:26781:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +26781 | method (::std::auto_ptr< method_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:5569:32: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 5569 | alignmentOfReference (::std::auto_ptr< alignmentOfReference_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:26857:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +26857 | ontology (::std::auto_ptr< ontology_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:5593:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 5593 | alignedSequence (::std::auto_ptr< alignedSequence_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:26933:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +26933 | database (::std::auto_ptr< database_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:5627:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 5627 | sequenceRecord (::std::auto_ptr< sequenceRecord_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:27009:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +27009 | scoreType (::std::auto_ptr< scoreType_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:5657:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 5657 | sequenceReference (::std::auto_ptr< sequenceReference_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:27164:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +27164 | localId (::std::auto_ptr< localId_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:5687:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 5687 | sequenceName (::std::auto_ptr< sequenceName_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:27316:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +27316 | localId (::std::auto_ptr< localId_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:5717:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 5717 | species (::std::auto_ptr< species_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:27468:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +27468 | localId (::std::auto_ptr< localId_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:5747:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 5747 | genomeBuild (::std::auto_ptr< genomeBuild_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:27620:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +27620 | localId (::std::auto_ptr< localId_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:5777:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 5777 | chromosome (::std::auto_ptr< chromosome_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:27773:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +27773 | localId (::std::auto_ptr< localId_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:5807:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 5807 | subsequencePosition (::std::auto_ptr< subsequencePosition_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:27925:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +27925 | feature (::std::auto_ptr< feature_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:5837:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 5837 | variantAccession (::std::auto_ptr< variantAccession_type > x) +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:28001:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +28001 | condensedReferences (::std::auto_ptr< condensedReferences_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:28088:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +28088 | annotation1 (::std::auto_ptr< feature_type >); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:5867:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 5867 | variantNote (::std::auto_ptr< variantNote_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:28471:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +28471 | method (::std::auto_ptr< method_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:5895:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 5895 | feature (::std::auto_ptr< feature_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:28547:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +28547 | methodIdRef (::std::auto_ptr< methodIdRef_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:5925:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 5925 | condensedReferences (::std::auto_ptr< condensedReferences_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:28623:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +28623 | ontology (::std::auto_ptr< ontology_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6089:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 6089 | localId (::std::auto_ptr< localId_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:28699:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +28699 | ontologyIdRef (::std::auto_ptr< ontologyIdRef_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6117:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 6117 | code (::std::auto_ptr< code_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:28775:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +28775 | database (::std::auto_ptr< database_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6195:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 6195 | aminoacid (::std::auto_ptr< aminoacid_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:28851:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +28851 | databaseIdRef (::std::auto_ptr< databaseIdRef_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6249:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 6249 | note (::std::auto_ptr< note_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:28927:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +28927 | scoreType (::std::auto_ptr< scoreType_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6359:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 6359 | method (::std::auto_ptr< method_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:29003:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +29003 | scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6389:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 6389 | ontology (::std::auto_ptr< ontology_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:29244:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +29244 | localId (::std::auto_ptr< localId_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6419:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 6419 | database (::std::auto_ptr< database_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:29415:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +29415 | relationName (::std::auto_ptr< relationName_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6449:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 6449 | scoreType (::std::auto_ptr< scoreType_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:29826:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +29826 | localIdRef (::std::auto_ptr< localIdRef_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6477:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 6477 | localId (::std::auto_ptr< localId_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:7570:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 7570 | BiosequenceRecord (::std::auto_ptr< sequence_type > sequence) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -9727,9 +9459,10 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6505:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 6505 | localId (::std::auto_ptr< localId_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::BiosequenceRecord::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:7630:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 7630 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -9737,163 +9470,179 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6533:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 6533 | localId (::std::auto_ptr< localId_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.cxx:41: +freecontact_input_xsd.hxx:723:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 723 | flat (::std::auto_ptr< flat_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6561:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 6561 | localId (::std::auto_ptr< localId_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.cxx:41: +freecontact_input_xsd.hxx:746:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 746 | FcAlignment (::std::auto_ptr< flat_type >); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6589:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 6589 | localId (::std::auto_ptr< localId_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.cxx:41: +freecontact_input_xsd.hxx:847:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 847 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6617:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 6617 | feature (::std::auto_ptr< feature_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.cxx:41: +freecontact_input_xsd.hxx:863:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 863 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6647:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 6647 | condensedReferences (::std::auto_ptr< condensedReferences_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.cxx:41: +freecontact_input_xsd.hxx:881:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 881 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6707:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 6707 | method (::std::auto_ptr< method_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.cxx:41: +freecontact_input_xsd.hxx:897:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 897 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6737:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 6737 | methodIdRef (::std::auto_ptr< methodIdRef_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.cxx:41: +freecontact_input_xsd.hxx:913:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 913 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6767:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 6767 | ontology (::std::auto_ptr< ontology_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.cxx:41: +freecontact_input_xsd.hxx:931:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 931 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6797:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 6797 | ontologyIdRef (::std::auto_ptr< ontologyIdRef_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.cxx:41: +freecontact_input_xsd.hxx:951:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 951 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6827:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 6827 | database (::std::auto_ptr< database_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.cxx:41: +freecontact_input_xsd.hxx:973:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 973 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6857:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 6857 | databaseIdRef (::std::auto_ptr< databaseIdRef_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.cxx:41: +freecontact_input_xsd.hxx:996:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 996 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6887:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 6887 | scoreType (::std::auto_ptr< scoreType_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.cxx:41: +freecontact_input_xsd.hxx:1013:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 1013 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6917:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 6917 | scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.cxx:41: +freecontact_input_xsd.hxx:1029:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 1029 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6969:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 6969 | localId (::std::auto_ptr< localId_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.cxx:41: +freecontact_input_xsd.hxx:1047:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 1047 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:7003:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 7003 | relationName (::std::auto_ptr< relationName_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.cxx:41: +freecontact_input_xsd.hxx:1061:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 1061 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:7103:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 7103 | localIdRef (::std::auto_ptr< localIdRef_type > x) - | ^~~~~~~~ +In file included from freecontact_input_xsd.cxx:41: +freecontact_input_xsd.hxx:1078:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 1078 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ @@ -10110,79 +9859,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -freecontact_output_xsd.cxx:280:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 280 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -freecontact_output_xsd.cxx:289:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 289 | ::std::auto_ptr< ::BioXSD::FeatureRecord > r ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -freecontact_output_xsd.cxx: At global scope: -freecontact_output_xsd.cxx:307:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 307 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -freecontact_output_xsd.cxx: In function 'std::auto_ptr freecontact_output_xsd::contactMap(xsd::cxx::xml::dom::auto_ptr, xml_schema::flags, const properties&)': -freecontact_output_xsd.cxx:329:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 329 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -freecontact_output_xsd.cxx:339:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 339 | ::std::auto_ptr< ::BioXSD::FeatureRecord > r ( - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:7570:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 7570 | BiosequenceRecord (::std::auto_ptr< sequence_type > sequence) - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::BiosequenceRecord::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:7630:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 7630 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:7641:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 7641 | ::std::auto_ptr< sequence_type > r ( | ^~~~~~~~ @@ -10576,6 +10252,16 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +freecontact_output_xsd.cxx:280:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 280 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.cxx:9148:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 9148 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( | ^~~~~~~~ @@ -10716,6 +10402,16 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +freecontact_input_xsd.cxx:67:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 67 | flat (::std::auto_ptr< flat_type > x) + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::FeatureType::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': BioXSD-1.1_xsd.cxx:9610:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 9610 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( @@ -11059,11 +10755,21 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +freecontact_output_xsd.cxx:289:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 289 | ::std::auto_ptr< ::BioXSD::FeatureRecord > r ( + | ^~~~~~~~ BioXSD-1.1_xsd.cxx:10271:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 10271 | ::std::auto_ptr< featureTypeDetails_type > r ( | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here @@ -11159,6 +10865,28 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +freecontact_output_xsd.cxx: At global scope: +freecontact_output_xsd.cxx:307:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 307 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +freecontact_output_xsd.cxx: In function 'std::auto_ptr freecontact_output_xsd::contactMap(xsd::cxx::xml::dom::auto_ptr, xml_schema::flags, const properties&)': +freecontact_output_xsd.cxx:329:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 329 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.cxx: At global scope: BioXSD-1.1_xsd.cxx:10460:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 10460 | FeatureRecord (::std::auto_ptr< referenceSequence_type > referenceSequence) @@ -11170,6 +10898,16 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +freecontact_output_xsd.cxx:339:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 339 | ::std::auto_ptr< ::BioXSD::FeatureRecord > r ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::FeatureRecord::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': BioXSD-1.1_xsd.cxx:10509:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 10509 | ::std::auto_ptr< referenceSequence_type > r ( @@ -11752,6 +11490,27 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +freecontact_input_xsd.cxx:97:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 97 | FcAlignment (::std::auto_ptr< flat_type > flat) + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +freecontact_input_xsd.cxx: In member function 'void freecontact_input_xsd::FcAlignment::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +freecontact_input_xsd.cxx:139:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 139 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::GeneralOutsideSequencePosition::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': BioXSD-1.1_xsd.cxx:12970:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 12970 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( @@ -11833,220 +11592,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:13076:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -13076 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:13087:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -13087 | ::std::auto_ptr< explicitSequenceReference_type > r ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::GeneticCode::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:13231:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -13231 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:13242:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -13242 | ::std::auto_ptr< reference_type > r ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:13260:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -13260 | ::std::auto_ptr< codon_type > r ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::TranslationData::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:13354:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -13354 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:13365:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -13365 | ::std::auto_ptr< geneticCode_type > r ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:13382:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -13382 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:13393:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -13393 | ::std::auto_ptr< phase_type > r ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:13410:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -13410 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:13421:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -13421 | ::std::auto_ptr< reversedTranslationDirection_type > r ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::SequenceReference::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:14184:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -14184 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:14195:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -14195 | ::std::auto_ptr< subsequencePosition_type > r ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:14212:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -14212 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:14223:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -14223 | ::std::auto_ptr< supersequence_type > r ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:14240:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -14240 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:14251:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -14251 | ::std::auto_ptr< supersequenceName_type > r ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::Method::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:14410:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -14410 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:14419:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -14419 | ::std::auto_ptr< categoryConcept_type > r ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:14435:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -14435 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:14444:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -14444 | ::std::auto_ptr< citation_type > r ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:1507:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -12143,6 +11688,26 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:13076:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +13076 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:13087:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +13087 | ::std::auto_ptr< explicitSequenceReference_type > r ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:2105:45: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -12167,6 +11732,17 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::GeneticCode::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:13231:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +13231 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:2267:38: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -12191,6 +11767,16 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:13242:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +13242 | ::std::auto_ptr< reference_type > r ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:2611:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -12203,6 +11789,16 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:13260:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +13260 | ::std::auto_ptr< codon_type > r ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:3051:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -12311,6 +11907,27 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::TranslationData::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:13354:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +13354 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:13365:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +13365 | ::std::auto_ptr< geneticCode_type > r ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:4110:36: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -12323,6 +11940,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:13382:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +13382 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:4186:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -12335,6 +11955,13 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:4262:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -12347,11 +11974,21 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:13393:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +13393 | ::std::auto_ptr< phase_type > r ( + | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:4338:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 4338 | sequenceName (::std::auto_ptr< sequenceName_type > p); | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/boost/format.hpp:23, @@ -12371,6 +12008,16 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:13410:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +13410 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:4490:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -12383,6 +12030,16 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:13421:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +13421 | ::std::auto_ptr< reversedTranslationDirection_type > r ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:4566:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -12431,6 +12088,16 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +freecontact_input_xsd.cxx:150:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 150 | ::std::auto_ptr< flat_type > r ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:5064:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -12443,6 +12110,17 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +freecontact_input_xsd.cxx: At global scope: +freecontact_input_xsd.cxx:212:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 212 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:5589:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -12479,6 +12157,17 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(const string&, xml_schema::flags, const properties&)': +freecontact_input_xsd.cxx:229:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 229 | return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:6115:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -12491,6 +12180,17 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +freecontact_input_xsd.cxx: At global scope: +freecontact_input_xsd.cxx:234:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 234 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:6385:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -12503,6 +12203,110 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(const string&, xml_schema::error_handler&, xml_schema::flags, const properties&)': +freecontact_input_xsd.cxx:251:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 251 | return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +freecontact_input_xsd.cxx: At global scope: +freecontact_input_xsd.cxx:256:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 256 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(const string&, xercesc_3_2::DOMErrorHandler&, xml_schema::flags, const properties&)': +freecontact_input_xsd.cxx:269:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 269 | return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +freecontact_input_xsd.cxx: At global scope: +freecontact_input_xsd.cxx:274:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 274 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +freecontact_input_xsd.cxx:287:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 287 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +freecontact_input_xsd.cxx:301:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 301 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +freecontact_input_xsd.cxx:311:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 311 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +freecontact_input_xsd.cxx:325:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 325 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +freecontact_input_xsd.cxx:340:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 340 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +freecontact_input_xsd.cxx:351:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 351 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:6627:36: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -12515,6 +12319,17 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(xercesc_3_2::InputSource&, xml_schema::flags, const properties&)': +freecontact_input_xsd.cxx:364:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 364 | return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:6703:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -12551,6 +12366,17 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +freecontact_input_xsd.cxx: At global scope: +freecontact_input_xsd.cxx:369:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 369 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:6995:32: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -12563,6 +12389,28 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(xercesc_3_2::InputSource&, xml_schema::error_handler&, xml_schema::flags, const properties&)': +freecontact_input_xsd.cxx:382:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 382 | return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +freecontact_input_xsd.cxx: At global scope: +freecontact_input_xsd.cxx:387:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 387 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:7203:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -12587,11 +12435,57 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(xercesc_3_2::InputSource&, xercesc_3_2::DOMErrorHandler&, xml_schema::flags, const properties&)': +freecontact_input_xsd.cxx:400:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 400 | return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +freecontact_input_xsd.cxx: At global scope: +freecontact_input_xsd.cxx:405:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 405 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(const xercesc_3_2::DOMDocument&, xml_schema::flags, const properties&)': +freecontact_input_xsd.cxx:415:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 415 | return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +freecontact_input_xsd.cxx:424:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 424 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:7419:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 7419 | alignment (::std::auto_ptr< alignment_type > p); | ^~~~~~~~ +freecontact_input_xsd.cxx:433:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 433 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > r ( + | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/boost/format.hpp:23, @@ -12599,6 +12493,24 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +freecontact_input_xsd.cxx: At global scope: +freecontact_input_xsd.cxx:451:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 451 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:7588:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -12611,6 +12523,27 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(xsd::cxx::xml::dom::auto_ptr, xml_schema::flags, const properties&)': +freecontact_input_xsd.cxx:473:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 473 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +freecontact_input_xsd.cxx:483:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 483 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > r ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:7742:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -12971,6 +12904,47 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::SequenceReference::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:14184:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +14184 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:14195:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +14195 | ::std::auto_ptr< subsequencePosition_type > r ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:14212:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +14212 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:14223:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +14223 | ::std::auto_ptr< supersequence_type > r ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:11465:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -13055,6 +13029,26 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:14240:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +14240 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:14251:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +14251 | ::std::auto_ptr< supersequenceName_type > r ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:12377:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -13127,37 +13121,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::association::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:17632:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -17632 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:17643:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -17643 | ::std::auto_ptr< relationName_type > r ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:17660:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -17660 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:13071:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -13170,56 +13133,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:17669:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -17669 | ::std::auto_ptr< relationConcept_type > r ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:17685:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -17685 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:17694:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -17694 | ::std::auto_ptr< associatedConcept_type > r ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:17710:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -17710 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:17719:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -17719 | ::std::auto_ptr< associatedDatabaseEntry_type > r ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:13211:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -13232,8 +13145,21 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:17735:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -17735 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:13351:39: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +13351 | explicitSequenceReference (::std::auto_ptr< explicitSequenceReference_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::Method::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:14410:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +14410 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -13242,8 +13168,8 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:17744:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -17744 | ::std::auto_ptr< associatedDatabase_type > r ( +BioXSD-1.1_xsd.cxx:14419:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +14419 | ::std::auto_ptr< categoryConcept_type > r ( | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -13252,8 +13178,8 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:17760:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -17760 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( +BioXSD-1.1_xsd.cxx:14435:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +14435 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -13262,20 +13188,8 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:13351:39: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -13351 | explicitSequenceReference (::std::auto_ptr< explicitSequenceReference_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:17769:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -17769 | ::std::auto_ptr< associatedFeature_type > r ( +BioXSD-1.1_xsd.cxx:14444:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +14444 | ::std::auto_ptr< citation_type > r ( | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -13380,17 +13294,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::variation::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:17927:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -17927 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:14587:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -13415,16 +13318,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:17938:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -17938 | ::std::auto_ptr< canonicalVariant_type > r ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:14739:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -13437,16 +13330,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:17955:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -17955 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:14815:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -13459,16 +13342,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:17964:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -17964 | ::std::auto_ptr< variant_type > r ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:14894:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -13481,66 +13354,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:17980:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -17980 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:17991:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -17991 | ::std::auto_ptr< missing_type > r ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:18008:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -18008 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:18017:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -18017 | ::std::auto_ptr< score_type > r ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:18033:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -18033 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:18044:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -18044 | ::std::auto_ptr< position_type > r ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:15075:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -13589,17 +13402,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx: At global scope: -BioXSD-1.1_xsd.cxx:18102:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -18102 | alignment (::std::auto_ptr< alignedSequence_type > alignedSequence) - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:15481:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -13744,22 +13546,11 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::alignment::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:18148:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -18148 | ::std::auto_ptr< alignmentOfReference_type > r ( - | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:16769:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 16769 | variantAccession (::std::auto_ptr< variantAccession_type > p); | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/boost/format.hpp:23, @@ -13779,26 +13570,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:18161:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -18161 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:18172:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -18172 | ::std::auto_ptr< alignedSequence_type > r ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:17130:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -13919,209 +13690,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::referenceSequence::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:18292:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -18292 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:18303:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -18303 | ::std::auto_ptr< sequenceRecord_type > r ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:18320:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -18320 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:18331:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -18331 | ::std::auto_ptr< sequenceReference_type > r ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:18348:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -18348 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:18359:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -18359 | ::std::auto_ptr< sequenceName_type > r ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:18376:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -18376 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:18387:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -18387 | ::std::auto_ptr< species_type > r ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:18404:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -18404 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:18415:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -18415 | ::std::auto_ptr< genomeBuild_type > r ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:18432:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -18432 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:18443:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -18443 | ::std::auto_ptr< chromosome_type > r ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:18460:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -18460 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:18471:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -18471 | ::std::auto_ptr< subsequencePosition_type > r ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:18488:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -18488 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:18499:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -18499 | ::std::auto_ptr< variantAccession_type > r ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:18516:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -18516 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:18527:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -18527 | ::std::auto_ptr< variantNote_type > r ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx: At global scope: -BioXSD-1.1_xsd.cxx:18590:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -18590 | annotation (::std::auto_ptr< feature_type > feature) - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::annotation::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:18638:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -18638 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:22916:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -14134,46 +13702,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:18649:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -18649 | ::std::auto_ptr< feature_type > r ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:18667:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -18667 | ::std::auto_ptr< condensedReferences_type > r ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:18680:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -18680 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:18689:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -18689 | ::std::auto_ptr< occurrence_type > r ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:23505:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -14210,17 +13738,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::blockWithOccurrenceReferences::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:18801:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -18801 | ::std::auto_ptr< database_type > r ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:23961:34: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -14257,16 +13774,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:18812:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -18812 | ::std::auto_ptr< ontology_type > r ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:24200:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -14279,21 +13786,11 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:18823:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -18823 | ::std::auto_ptr< semanticConcept_type > r ( - | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:24276:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 24276 | sequenceReference (::std::auto_ptr< sequenceReference_type > p); | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/boost/format.hpp:23, @@ -14361,16 +13858,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:18834:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -18834 | ::std::auto_ptr< method_type > r ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:24734:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -14407,16 +13894,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:18845:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -18845 | ::std::auto_ptr< scoreType_type > r ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:25046:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -14429,16 +13906,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:18856:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -18856 | ::std::auto_ptr< annotation_type > r ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:25133:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -14499,77 +13966,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::alignmentOfReference::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:19177:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -19177 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:19186:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -19186 | ::std::auto_ptr< gap_type > r ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:19202:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -19202 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:19211:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -19211 | ::std::auto_ptr< insert_type > r ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:19227:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -19227 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:19236:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -19236 | ::std::auto_ptr< frameshift_type > r ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:19252:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -19252 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:26781:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -14582,16 +13978,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:19261:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -19261 | ::std::auto_ptr< sequenceScore_type > r ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:26857:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -14640,17 +14026,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::condensedReferences::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:19360:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -19360 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:27316:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -14663,26 +14038,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:19371:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -19371 | ::std::auto_ptr< method_type > r ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:19388:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -19388 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:27468:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -14695,36 +14050,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:19399:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -19399 | ::std::auto_ptr< ontology_type > r ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:19416:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -19416 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:19427:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -19427 | ::std::auto_ptr< database_type > r ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:27620:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -14737,26 +14062,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:19444:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -19444 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:19455:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -19455 | ::std::auto_ptr< scoreType_type > r ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:27773:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -14937,58 +14242,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx: At global scope: -BioXSD-1.1_xsd.cxx:19944:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -19944 | annotation1 (::std::auto_ptr< feature_type > feature) - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::annotation1::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:19992:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -19992 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:20003:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -20003 | ::std::auto_ptr< feature_type > r ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:20021:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -20021 | ::std::auto_ptr< condensedReferences_type > r ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:20035:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -20035 | ::std::auto_ptr< occurrence_type > r ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from _write_bioxsd.cpp:20: freecontact_input_xsd.hxx:723:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 723 | flat (::std::auto_ptr< flat_type > p); @@ -15158,10 +14411,6 @@ freecontact_input_xsd.hxx:1078:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 1078 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > | ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::condensedReferences1::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:20290:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -20290 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/boost/format.hpp:23, @@ -15169,6 +14418,946 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from _write_bioxsd.cpp:21: +freecontact_output_xsd.hxx:681:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 681 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from _write_bioxsd.cpp:21: +freecontact_output_xsd.hxx:697:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 697 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from _write_bioxsd.cpp:21: +freecontact_output_xsd.hxx:715:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 715 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from _write_bioxsd.cpp:21: +freecontact_output_xsd.hxx:731:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 731 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from _write_bioxsd.cpp:21: +freecontact_output_xsd.hxx:747:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 747 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from _write_bioxsd.cpp:21: +freecontact_output_xsd.hxx:765:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 765 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from _write_bioxsd.cpp:21: +freecontact_output_xsd.hxx:785:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 785 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from _write_bioxsd.cpp:21: +freecontact_output_xsd.hxx:807:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 807 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from _write_bioxsd.cpp:21: +freecontact_output_xsd.hxx:830:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 830 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from _write_bioxsd.cpp:21: +freecontact_output_xsd.hxx:847:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 847 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from _write_bioxsd.cpp:21: +freecontact_output_xsd.hxx:863:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 863 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from _write_bioxsd.cpp:21: +freecontact_output_xsd.hxx:881:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 881 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from _write_bioxsd.cpp:21: +freecontact_output_xsd.hxx:895:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 895 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from _write_bioxsd.cpp:21: +freecontact_output_xsd.hxx:912:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 912 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::association::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:17632:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +17632 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:17643:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +17643 | ::std::auto_ptr< relationName_type > r ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:17660:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +17660 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:17669:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +17669 | ::std::auto_ptr< relationConcept_type > r ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:17685:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +17685 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:17694:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +17694 | ::std::auto_ptr< associatedConcept_type > r ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:17710:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +17710 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:17719:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +17719 | ::std::auto_ptr< associatedDatabaseEntry_type > r ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:17735:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +17735 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:17744:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +17744 | ::std::auto_ptr< associatedDatabase_type > r ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:17760:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +17760 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:17769:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +17769 | ::std::auto_ptr< associatedFeature_type > r ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::variation::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:17927:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +17927 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:17938:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +17938 | ::std::auto_ptr< canonicalVariant_type > r ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:17955:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +17955 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:17964:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +17964 | ::std::auto_ptr< variant_type > r ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:17980:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +17980 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:17991:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +17991 | ::std::auto_ptr< missing_type > r ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:18008:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +18008 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:18017:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +18017 | ::std::auto_ptr< score_type > r ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:18033:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +18033 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:18044:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +18044 | ::std::auto_ptr< position_type > r ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx: At global scope: +BioXSD-1.1_xsd.cxx:18102:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +18102 | alignment (::std::auto_ptr< alignedSequence_type > alignedSequence) + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::alignment::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:18148:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +18148 | ::std::auto_ptr< alignmentOfReference_type > r ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:18161:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +18161 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:18172:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +18172 | ::std::auto_ptr< alignedSequence_type > r ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::referenceSequence::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:18292:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +18292 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:18303:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +18303 | ::std::auto_ptr< sequenceRecord_type > r ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:18320:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +18320 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:18331:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +18331 | ::std::auto_ptr< sequenceReference_type > r ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:18348:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +18348 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:18359:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +18359 | ::std::auto_ptr< sequenceName_type > r ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:18376:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +18376 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:18387:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +18387 | ::std::auto_ptr< species_type > r ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:18404:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +18404 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:18415:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +18415 | ::std::auto_ptr< genomeBuild_type > r ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:18432:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +18432 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:18443:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +18443 | ::std::auto_ptr< chromosome_type > r ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:18460:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +18460 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:18471:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +18471 | ::std::auto_ptr< subsequencePosition_type > r ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:18488:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +18488 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:18499:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +18499 | ::std::auto_ptr< variantAccession_type > r ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:18516:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +18516 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:18527:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +18527 | ::std::auto_ptr< variantNote_type > r ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx: At global scope: +BioXSD-1.1_xsd.cxx:18590:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +18590 | annotation (::std::auto_ptr< feature_type > feature) + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::annotation::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:18638:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +18638 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:18649:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +18649 | ::std::auto_ptr< feature_type > r ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:18667:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +18667 | ::std::auto_ptr< condensedReferences_type > r ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:18680:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +18680 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:18689:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +18689 | ::std::auto_ptr< occurrence_type > r ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::blockWithOccurrenceReferences::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:18801:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +18801 | ::std::auto_ptr< database_type > r ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:18812:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +18812 | ::std::auto_ptr< ontology_type > r ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:18823:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +18823 | ::std::auto_ptr< semanticConcept_type > r ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:18834:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +18834 | ::std::auto_ptr< method_type > r ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:18845:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +18845 | ::std::auto_ptr< scoreType_type > r ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:18856:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +18856 | ::std::auto_ptr< annotation_type > r ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::alignmentOfReference::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:19177:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +19177 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:19186:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +19186 | ::std::auto_ptr< gap_type > r ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:19202:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +19202 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:19211:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +19211 | ::std::auto_ptr< insert_type > r ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:19227:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +19227 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:19236:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +19236 | ::std::auto_ptr< frameshift_type > r ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:19252:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +19252 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:19261:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +19261 | ::std::auto_ptr< sequenceScore_type > r ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::condensedReferences::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:19360:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +19360 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:19371:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +19371 | ::std::auto_ptr< method_type > r ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:19388:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +19388 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:19399:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +19399 | ::std::auto_ptr< ontology_type > r ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:19416:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +19416 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:19427:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +19427 | ::std::auto_ptr< database_type > r ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:19444:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +19444 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:19455:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +19455 | ::std::auto_ptr< scoreType_type > r ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx: At global scope: +BioXSD-1.1_xsd.cxx:19944:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +19944 | annotation1 (::std::auto_ptr< feature_type > feature) + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::annotation1::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:19992:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +19992 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:20003:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +20003 | ::std::auto_ptr< feature_type > r ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:20021:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +20021 | ::std::auto_ptr< condensedReferences_type > r ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:20035:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +20035 | ::std::auto_ptr< occurrence_type > r ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::condensedReferences1::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:20290:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +20290 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -15408,160 +15597,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from _write_bioxsd.cpp:21: -freecontact_output_xsd.hxx:681:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 681 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from _write_bioxsd.cpp:21: -freecontact_output_xsd.hxx:697:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 697 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from _write_bioxsd.cpp:21: -freecontact_output_xsd.hxx:715:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 715 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from _write_bioxsd.cpp:21: -freecontact_output_xsd.hxx:731:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 731 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from _write_bioxsd.cpp:21: -freecontact_output_xsd.hxx:747:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 747 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from _write_bioxsd.cpp:21: -freecontact_output_xsd.hxx:765:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 765 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from _write_bioxsd.cpp:21: -freecontact_output_xsd.hxx:785:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 785 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from _write_bioxsd.cpp:21: -freecontact_output_xsd.hxx:807:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 807 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from _write_bioxsd.cpp:21: -freecontact_output_xsd.hxx:830:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 830 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from _write_bioxsd.cpp:21: -freecontact_output_xsd.hxx:847:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 847 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from _write_bioxsd.cpp:21: -freecontact_output_xsd.hxx:863:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 863 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from _write_bioxsd.cpp:21: -freecontact_output_xsd.hxx:881:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 881 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from _write_bioxsd.cpp:21: -freecontact_output_xsd.hxx:895:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 895 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from _write_bioxsd.cpp:21: -freecontact_output_xsd.hxx:912:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 912 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::associatedFeatureOccurrence::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': BioXSD-1.1_xsd.cxx:20868:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 20868 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( @@ -15583,69 +15618,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact.cpp:25: -../lib/freecontact.h:69:54: warning: ignoring attributes on template argument '__m128i' [-Wignored-attributes] - 69 | class LIBFREEC_API ali_t : public std::vector<__m128i> - | ^ -In file included from freecontact.cpp:25: -../lib/freecontact.h:113:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 113 | ali_t& push(const std::vector& __al) throw (alilen_error); - | ^~~~~ -../lib/freecontact.h:116:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 116 | inline ali_t& push(const std::string& __l) throw (alilen_error) - | ^~~~~ -In file included from freecontact.cpp:25: -../lib/freecontact.h: In constructor 'freecontact::ali_t::ali_t(uint16_t)': -../lib/freecontact.h:80:79: warning: ignoring attributes on template argument '__m128i' [-Wignored-attributes] - 80 | ali_t( const uint16_t __alilen = 0 ) : std::vector<__m128i>(), seqcnt(0), alilen(__alilen), alilen16(( alilen-1 )/16 + 1), alilenpad( 16 * alilen16 ) - | ^ -In file included from freecontact.cpp:25: -../lib/freecontact.h: At global scope: -../lib/freecontact.h:185:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 185 | ) throw (alilen_error, icme_timeout_error, std::range_error, std::runtime_error); - | ^~~~~ -../lib/freecontact.h:219:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 219 | ) throw (alilen_error, icme_timeout_error, std::range_error, std::runtime_error); - | ^~~~~ -../lib/freecontact.h:227:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 227 | ) throw (alilen_error, icme_timeout_error, std::range_error, std::runtime_error); - | ^~~~~ -../lib/freecontact.h:234:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 234 | ) throw (alilen_error, icme_timeout_error, std::range_error, std::runtime_error) - | ^~~~~ -freecontact.cpp: In function 'int main(int, char**)': -freecontact.cpp:165:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 165 | auto_ptr ali_ifs_p; - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/boost/function/function_base.hpp:16, - from /usr/include/boost/function/detail/prologue.hpp:17, - from /usr/include/boost/function/function_template.hpp:13, - from /usr/include/boost/function/detail/maybe_include.hpp:22, - from /usr/include/boost/function/function1.hpp:11, - from /usr/include/boost/program_options/value_semantic.hpp:13, - from /usr/include/boost/program_options/options_description.hpp:13, - from /usr/include/boost/program_options.hpp:15, - from freecontact.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -freecontact.cpp:169:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 169 | ali_ifs_p = auto_ptr(new std::ifstream(vm["ali"].as().c_str())); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/boost/function/function_base.hpp:16, - from /usr/include/boost/function/detail/prologue.hpp:17, - from /usr/include/boost/function/function_template.hpp:13, - from /usr/include/boost/function/detail/maybe_include.hpp:22, - from /usr/include/boost/function/function1.hpp:11, - from /usr/include/boost/program_options/value_semantic.hpp:13, - from /usr/include/boost/program_options/options_description.hpp:13, - from /usr/include/boost/program_options.hpp:15, - from freecontact.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from _write_bioxsd.cpp:22: ../lib/freecontact.h:69:54: warning: ignoring attributes on template argument '__m128i' [-Wignored-attributes] 69 | class LIBFREEC_API ali_t : public std::vector<__m128i> @@ -15980,7 +15952,70 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -/bin/bash ../libtool --tag=CXX --mode=link g++ -fopenmp -g -O2 -fdebug-prefix-map=/build/freecontact-1.0.21=. -fstack-protector-strong -Wformat -Werror=format-security -L/usr/lib -Wl,-z,relro -Wl,-z,now -o freecontact freecontact-freecontact.o freecontact-_write_bioxsd.o freecontact-freecontact_input_xsd.o freecontact-freecontact_output_xsd.o freecontact-BioXSD-1.1_xsd.o -lboost_program_options -lxerces-c ../lib/libfreecontact.la +In file included from freecontact.cpp:25: +../lib/freecontact.h:69:54: warning: ignoring attributes on template argument '__m128i' [-Wignored-attributes] + 69 | class LIBFREEC_API ali_t : public std::vector<__m128i> + | ^ +In file included from freecontact.cpp:25: +../lib/freecontact.h:113:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 113 | ali_t& push(const std::vector& __al) throw (alilen_error); + | ^~~~~ +../lib/freecontact.h:116:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 116 | inline ali_t& push(const std::string& __l) throw (alilen_error) + | ^~~~~ +In file included from freecontact.cpp:25: +../lib/freecontact.h: In constructor 'freecontact::ali_t::ali_t(uint16_t)': +../lib/freecontact.h:80:79: warning: ignoring attributes on template argument '__m128i' [-Wignored-attributes] + 80 | ali_t( const uint16_t __alilen = 0 ) : std::vector<__m128i>(), seqcnt(0), alilen(__alilen), alilen16(( alilen-1 )/16 + 1), alilenpad( 16 * alilen16 ) + | ^ +In file included from freecontact.cpp:25: +../lib/freecontact.h: At global scope: +../lib/freecontact.h:185:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 185 | ) throw (alilen_error, icme_timeout_error, std::range_error, std::runtime_error); + | ^~~~~ +../lib/freecontact.h:219:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 219 | ) throw (alilen_error, icme_timeout_error, std::range_error, std::runtime_error); + | ^~~~~ +../lib/freecontact.h:227:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 227 | ) throw (alilen_error, icme_timeout_error, std::range_error, std::runtime_error); + | ^~~~~ +../lib/freecontact.h:234:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 234 | ) throw (alilen_error, icme_timeout_error, std::range_error, std::runtime_error) + | ^~~~~ +freecontact.cpp: In function 'int main(int, char**)': +freecontact.cpp:165:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 165 | auto_ptr ali_ifs_p; + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/boost/function/function_base.hpp:16, + from /usr/include/boost/function/detail/prologue.hpp:17, + from /usr/include/boost/function/function_template.hpp:13, + from /usr/include/boost/function/detail/maybe_include.hpp:22, + from /usr/include/boost/function/function1.hpp:11, + from /usr/include/boost/program_options/value_semantic.hpp:13, + from /usr/include/boost/program_options/options_description.hpp:13, + from /usr/include/boost/program_options.hpp:15, + from freecontact.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +freecontact.cpp:169:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 169 | ali_ifs_p = auto_ptr(new std::ifstream(vm["ali"].as().c_str())); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/boost/function/function_base.hpp:16, + from /usr/include/boost/function/detail/prologue.hpp:17, + from /usr/include/boost/function/function_template.hpp:13, + from /usr/include/boost/function/detail/maybe_include.hpp:22, + from /usr/include/boost/function/function1.hpp:11, + from /usr/include/boost/program_options/value_semantic.hpp:13, + from /usr/include/boost/program_options/options_description.hpp:13, + from /usr/include/boost/program_options.hpp:15, + from freecontact.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +/bin/sh ../libtool --tag=CXX --mode=link g++ -fopenmp -g -O2 -fdebug-prefix-map=/build/freecontact-1.0.21=. -fstack-protector-strong -Wformat -Werror=format-security -L/usr/lib -Wl,-z,relro -Wl,-z,now -o freecontact freecontact-freecontact.o freecontact-_write_bioxsd.o freecontact-freecontact_input_xsd.o freecontact-freecontact_output_xsd.o freecontact-BioXSD-1.1_xsd.o -lboost_program_options -lxerces-c ../lib/libfreecontact.la libtool: link: g++ -fopenmp -g -O2 -fdebug-prefix-map=/build/freecontact-1.0.21=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/freecontact freecontact-freecontact.o freecontact-_write_bioxsd.o freecontact-freecontact_input_xsd.o freecontact-freecontact_output_xsd.o freecontact-BioXSD-1.1_xsd.o -L/usr/lib -lboost_program_options -lxerces-c ../lib/.libs/libfreecontact.so -pthread -fopenmp make[2]: Leaving directory '/build/freecontact-1.0.21/src' make[2]: Entering directory '/build/freecontact-1.0.21' @@ -15988,7 +16023,7 @@ make[2]: Leaving directory '/build/freecontact-1.0.21' make[1]: Leaving directory '/build/freecontact-1.0.21' dh_auto_test - make -j16 check VERBOSE=1 + make -j15 check VERBOSE=1 make[1]: Entering directory '/build/freecontact-1.0.21' Making check in lib make[2]: Entering directory '/build/freecontact-1.0.21/lib' @@ -16030,7 +16065,7 @@ make[2]: Entering directory '/build/freecontact-1.0.21/lib' make[3]: Entering directory '/build/freecontact-1.0.21/lib' /bin/mkdir -p '/build/freecontact-1.0.21/debian/tmp/usr/lib/x86_64-linux-gnu' - /bin/bash ../libtool --mode=install /usr/bin/install -c libfreecontact.la '/build/freecontact-1.0.21/debian/tmp/usr/lib/x86_64-linux-gnu' + /bin/sh ../libtool --mode=install /usr/bin/install -c libfreecontact.la '/build/freecontact-1.0.21/debian/tmp/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libfreecontact.so.0.0.0 /build/freecontact-1.0.21/debian/tmp/usr/lib/x86_64-linux-gnu/libfreecontact.so.0.0.0 libtool: install: (cd /build/freecontact-1.0.21/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libfreecontact.so.0.0.0 libfreecontact.so.0 || { rm -f libfreecontact.so.0 && ln -s libfreecontact.so.0.0.0 libfreecontact.so.0; }; }) libtool: install: (cd /build/freecontact-1.0.21/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libfreecontact.so.0.0.0 libfreecontact.so || { rm -f libfreecontact.so && ln -s libfreecontact.so.0.0.0 libfreecontact.so; }; }) @@ -16047,7 +16082,7 @@ make[2]: Entering directory '/build/freecontact-1.0.21/src' make[3]: Entering directory '/build/freecontact-1.0.21/src' /bin/mkdir -p '/build/freecontact-1.0.21/debian/tmp/usr/bin' - /bin/bash ../libtool --mode=install /usr/bin/install -c freecontact '/build/freecontact-1.0.21/debian/tmp/usr/bin' + /bin/sh ../libtool --mode=install /usr/bin/install -c freecontact '/build/freecontact-1.0.21/debian/tmp/usr/bin' libtool: warning: '../lib/libfreecontact.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/freecontact /build/freecontact-1.0.21/debian/tmp/usr/bin/freecontact /bin/mkdir -p '/build/freecontact-1.0.21/debian/tmp/usr/share/doc/freecontact/examples' @@ -16148,12 +16183,12 @@ make[1]: Leaving directory '/build/freecontact-1.0.21' dh_md5sums dh_builddeb -dpkg-deb: building package 'freecontact' in '../freecontact_1.0.21-9_amd64.deb'. +dpkg-deb: building package 'libfreecontact-doc' in '../libfreecontact-doc_1.0.21-9_all.deb'. dpkg-deb: building package 'freecontact-dbgsym' in '../freecontact-dbgsym_1.0.21-9_amd64.deb'. -dpkg-deb: building package 'libfreecontact0v5' in '../libfreecontact0v5_1.0.21-9_amd64.deb'. -dpkg-deb: building package 'libfreecontact-dev' in '../libfreecontact-dev_1.0.21-9_amd64.deb'. +dpkg-deb: building package 'freecontact' in '../freecontact_1.0.21-9_amd64.deb'. dpkg-deb: building package 'libfreecontact0v5-dbgsym' in '../libfreecontact0v5-dbgsym_1.0.21-9_amd64.deb'. -dpkg-deb: building package 'libfreecontact-doc' in '../libfreecontact-doc_1.0.21-9_all.deb'. +dpkg-deb: building package 'libfreecontact-dev' in '../libfreecontact-dev_1.0.21-9_amd64.deb'. +dpkg-deb: building package 'libfreecontact0v5' in '../libfreecontact0v5_1.0.21-9_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../freecontact_1.0.21-9_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -16161,12 +16196,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3209087/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3209087/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2840159 and its subdirectories -I: Current time: Thu Dec 8 08:19:26 -12 2022 -I: pbuilder-time-stamp: 1670530766 +I: removing directory /srv/workspace/pbuilder/3209087 and its subdirectories +I: Current time: Sat Nov 6 04:07:09 +14 2021 +I: pbuilder-time-stamp: 1636121229