Diff of the two buildlogs: -- --- b1/build.log 2021-12-25 20:09:23.756775677 +0000 +++ b2/build.log 2021-12-25 20:16:45.534795498 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Jan 27 14:13:52 -12 2023 -I: pbuilder-time-stamp: 1674872032 +I: Current time: Sun Dec 26 10:09:25 +14 2021 +I: pbuilder-time-stamp: 1640462965 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -16,8 +16,8 @@ I: copying [./cmtk_3.3.1p1+dfsg-2.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.5MXunG0T/trustedkeys.kbx': General error -gpgv: Signature made Mon Nov 11 00:17:21 2019 -12 +gpgv: keyblock resource '/tmp/dpkg-verify-sig.Tj19_gpx/trustedkeys.kbx': General error +gpgv: Signature made Tue Nov 12 02:17:21 2019 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -32,135 +32,169 @@ dpkg-source: info: applying dcmtk-3.6.1-compatibility I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/166702/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3894293/tmp/hooks/D01_modify_environment starting +debug: Running on ionos1-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3894293/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3894293/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=16' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=15' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='6b9f0f2a8817409ab0b414b10a61b696' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='166702' - PS1='# ' - PS2='> ' + INVOCATION_ID=875fc16b55724c42b84b820d6632f16b + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3894293 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.pDty8viw2n/pbuilderrc_vpDk --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.pDty8viw2n/b1 --logfile b1/build.log cmtk_3.3.1p1+dfsg-2.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://85.184.249.68:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.pDty8viw2n/pbuilderrc_VSNs --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.pDty8viw2n/b2 --logfile b2/build.log cmtk_3.3.1p1+dfsg-2.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://78.137.99.97:3128 I: uname -a - Linux ionos15-amd64 5.14.0-0.bpo.2-amd64 #1 SMP Debian 5.14.9-2~bpo11+1 (2021-10-10) x86_64 GNU/Linux + Linux i-capture-the-hostname 5.10.0-10-amd64 #1 SMP Debian 5.10.84-1 (2021-12-08) x86_64 GNU/Linux I: ls -l /bin total 5476 - -rwxr-xr-x 1 root root 1234376 Aug 4 2021 bash - -rwxr-xr-x 3 root root 38984 Jul 20 2020 bunzip2 - -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzcat - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep - -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzip2 - -rwxr-xr-x 1 root root 18424 Jul 20 2020 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore - -rwxr-xr-x 1 root root 43936 Sep 23 2020 cat - -rwxr-xr-x 1 root root 72672 Sep 23 2020 chgrp - -rwxr-xr-x 1 root root 64448 Sep 23 2020 chmod - -rwxr-xr-x 1 root root 72672 Sep 23 2020 chown - -rwxr-xr-x 1 root root 151168 Sep 23 2020 cp - -rwxr-xr-x 1 root root 125560 Dec 10 2020 dash - -rwxr-xr-x 1 root root 113664 Sep 23 2020 date - -rwxr-xr-x 1 root root 80968 Sep 23 2020 dd - -rwxr-xr-x 1 root root 93936 Sep 23 2020 df - -rwxr-xr-x 1 root root 147176 Sep 23 2020 dir - -rwxr-xr-x 1 root root 84440 Jul 28 2021 dmesg - lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname - -rwxr-xr-x 1 root root 39712 Sep 23 2020 echo - -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep - -rwxr-xr-x 1 root root 39680 Sep 23 2020 false - -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep - -rwxr-xr-x 1 root root 69032 Jul 28 2021 findmnt - -rwsr-xr-x 1 root root 34896 Feb 26 2021 fusermount - -rwxr-xr-x 1 root root 203072 Nov 9 2020 grep - -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip - -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe - -rwxr-xr-x 1 root root 98048 Mar 2 2021 gzip - -rwxr-xr-x 1 root root 22600 Nov 6 2019 hostname - -rwxr-xr-x 1 root root 72840 Sep 23 2020 ln - -rwxr-xr-x 1 root root 56952 Feb 7 2020 login - -rwxr-xr-x 1 root root 147176 Sep 23 2020 ls - -rwxr-xr-x 1 root root 149736 Jul 28 2021 lsblk - -rwxr-xr-x 1 root root 85184 Sep 23 2020 mkdir - -rwxr-xr-x 1 root root 76896 Sep 23 2020 mknod - -rwxr-xr-x 1 root root 48064 Sep 23 2020 mktemp - -rwxr-xr-x 1 root root 59632 Jul 28 2021 more - -rwsr-xr-x 1 root root 55528 Jul 28 2021 mount - -rwxr-xr-x 1 root root 18664 Jul 28 2021 mountpoint - -rwxr-xr-x 1 root root 147080 Sep 23 2020 mv - lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 43872 Sep 23 2020 pwd - lrwxrwxrwx 1 root root 4 Aug 4 2021 rbash -> bash - -rwxr-xr-x 1 root root 52032 Sep 23 2020 readlink - -rwxr-xr-x 1 root root 72704 Sep 23 2020 rm - -rwxr-xr-x 1 root root 52032 Sep 23 2020 rmdir - -rwxr-xr-x 1 root root 27472 Sep 27 2020 run-parts - -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Jan 23 03:47 sh -> dash - -rwxr-xr-x 1 root root 43808 Sep 23 2020 sleep - -rwxr-xr-x 1 root root 84928 Sep 23 2020 stty - -rwsr-xr-x 1 root root 71912 Jul 28 2021 su - -rwxr-xr-x 1 root root 39744 Sep 23 2020 sync - -rwxr-xr-x 1 root root 531928 Feb 16 2021 tar - -rwxr-xr-x 1 root root 14456 Sep 27 2020 tempfile - -rwxr-xr-x 1 root root 101408 Sep 23 2020 touch - -rwxr-xr-x 1 root root 39680 Sep 23 2020 true - -rwxr-xr-x 1 root root 14328 Feb 26 2021 ulockmgr_server - -rwsr-xr-x 1 root root 35040 Jul 28 2021 umount - -rwxr-xr-x 1 root root 39744 Sep 23 2020 uname - -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress - -rwxr-xr-x 1 root root 147176 Sep 23 2020 vdir - -rwxr-xr-x 1 root root 63744 Jul 28 2021 wdctl - lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat - -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp - -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff - -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep - -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep - -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce - -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep - -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless - -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore - -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew -I: user script /srv/workspace/pbuilder/166702/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1234376 Aug 5 10:25 bash + -rwxr-xr-x 3 root root 38984 Jul 21 2020 bunzip2 + -rwxr-xr-x 3 root root 38984 Jul 21 2020 bzcat + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep + -rwxr-xr-x 3 root root 38984 Jul 21 2020 bzip2 + -rwxr-xr-x 1 root root 18424 Jul 21 2020 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore + -rwxr-xr-x 1 root root 43936 Sep 24 2020 cat + -rwxr-xr-x 1 root root 72672 Sep 24 2020 chgrp + -rwxr-xr-x 1 root root 64448 Sep 24 2020 chmod + -rwxr-xr-x 1 root root 72672 Sep 24 2020 chown + -rwxr-xr-x 1 root root 151168 Sep 24 2020 cp + -rwxr-xr-x 1 root root 125560 Dec 11 2020 dash + -rwxr-xr-x 1 root root 113664 Sep 24 2020 date + -rwxr-xr-x 1 root root 80968 Sep 24 2020 dd + -rwxr-xr-x 1 root root 93936 Sep 24 2020 df + -rwxr-xr-x 1 root root 147176 Sep 24 2020 dir + -rwxr-xr-x 1 root root 84440 Jul 29 09:09 dmesg + lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname + -rwxr-xr-x 1 root root 39712 Sep 24 2020 echo + -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep + -rwxr-xr-x 1 root root 39680 Sep 24 2020 false + -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep + -rwxr-xr-x 1 root root 69032 Jul 29 09:09 findmnt + -rwsr-xr-x 1 root root 34896 Feb 27 2021 fusermount + -rwxr-xr-x 1 root root 203072 Nov 10 2020 grep + -rwxr-xr-x 2 root root 2346 Mar 3 2021 gunzip + -rwxr-xr-x 1 root root 6376 Mar 3 2021 gzexe + -rwxr-xr-x 1 root root 98048 Mar 3 2021 gzip + -rwxr-xr-x 1 root root 22600 Nov 8 2019 hostname + -rwxr-xr-x 1 root root 72840 Sep 24 2020 ln + -rwxr-xr-x 1 root root 56952 Feb 8 2020 login + -rwxr-xr-x 1 root root 147176 Sep 24 2020 ls + -rwxr-xr-x 1 root root 149736 Jul 29 09:09 lsblk + -rwxr-xr-x 1 root root 85184 Sep 24 2020 mkdir + -rwxr-xr-x 1 root root 76896 Sep 24 2020 mknod + -rwxr-xr-x 1 root root 48064 Sep 24 2020 mktemp + -rwxr-xr-x 1 root root 59632 Jul 29 09:09 more + -rwsr-xr-x 1 root root 55528 Jul 29 09:09 mount + -rwxr-xr-x 1 root root 18664 Jul 29 09:09 mountpoint + -rwxr-xr-x 1 root root 147080 Sep 24 2020 mv + lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 19 2021 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 43872 Sep 24 2020 pwd + lrwxrwxrwx 1 root root 4 Aug 5 10:25 rbash -> bash + -rwxr-xr-x 1 root root 52032 Sep 24 2020 readlink + -rwxr-xr-x 1 root root 72704 Sep 24 2020 rm + -rwxr-xr-x 1 root root 52032 Sep 24 2020 rmdir + -rwxr-xr-x 1 root root 27472 Sep 28 2020 run-parts + -rwxr-xr-x 1 root root 122224 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Dec 26 10:09 sh -> bash + lrwxrwxrwx 1 root root 4 Dec 21 23:25 sh.distrib -> dash + -rwxr-xr-x 1 root root 43808 Sep 24 2020 sleep + -rwxr-xr-x 1 root root 84928 Sep 24 2020 stty + -rwsr-xr-x 1 root root 71912 Jul 29 09:09 su + -rwxr-xr-x 1 root root 39744 Sep 24 2020 sync + -rwxr-xr-x 1 root root 531928 Feb 17 2021 tar + -rwxr-xr-x 1 root root 14456 Sep 28 2020 tempfile + -rwxr-xr-x 1 root root 101408 Sep 24 2020 touch + -rwxr-xr-x 1 root root 39680 Sep 24 2020 true + -rwxr-xr-x 1 root root 14328 Feb 27 2021 ulockmgr_server + -rwsr-xr-x 1 root root 35040 Jul 29 09:09 umount + -rwxr-xr-x 1 root root 39744 Sep 24 2020 uname + -rwxr-xr-x 2 root root 2346 Mar 3 2021 uncompress + -rwxr-xr-x 1 root root 147176 Sep 24 2020 vdir + -rwxr-xr-x 1 root root 63744 Jul 29 09:09 wdctl + lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Mar 3 2021 zcat + -rwxr-xr-x 1 root root 1678 Mar 3 2021 zcmp + -rwxr-xr-x 1 root root 5880 Mar 3 2021 zdiff + -rwxr-xr-x 1 root root 29 Mar 3 2021 zegrep + -rwxr-xr-x 1 root root 29 Mar 3 2021 zfgrep + -rwxr-xr-x 1 root root 2081 Mar 3 2021 zforce + -rwxr-xr-x 1 root root 7585 Mar 3 2021 zgrep + -rwxr-xr-x 1 root root 2206 Mar 3 2021 zless + -rwxr-xr-x 1 root root 1842 Mar 3 2021 zmore + -rwxr-xr-x 1 root root 4553 Mar 3 2021 znew +I: user script /srv/workspace/pbuilder/3894293/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -384,7 +418,7 @@ Get: 145 http://deb.debian.org/debian bullseye/main amd64 libglx0 amd64 1.3.2-1 [35.7 kB] Get: 146 http://deb.debian.org/debian bullseye/main amd64 libgl1 amd64 1.3.2-1 [89.5 kB] Get: 147 http://deb.debian.org/debian bullseye/main amd64 xvfb amd64 2:1.20.11-1 [3043 kB] -Fetched 102 MB in 3s (32.4 MB/s) +Fetched 102 MB in 2s (61.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19655 files and directories currently installed.) @@ -995,7 +1029,8 @@ fakeroot is already the newest version (1.25.3-1.1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/cmtk-3.3.1p1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../cmtk_3.3.1p1+dfsg-2_source.changes +hostname: Name or service not known +I: Running cd /build/cmtk-3.3.1p1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../cmtk_3.3.1p1+dfsg-2_source.changes dpkg-buildpackage: info: source package cmtk dpkg-buildpackage: info: source version 3.3.1p1+dfsg-2 dpkg-buildpackage: info: source distribution unstable @@ -1120,7 +1155,7 @@ -- Check for ANSI scope - found -- Check for sstream -- Check for sstream - found --- System is Linux-5.14.0-0.bpo.2-amd64 +-- System is Linux-5.10.0-10-amd64 -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file execinfo.h @@ -1220,212 +1255,217 @@ -- Build files have been written to: /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/cmtk-3.3.1p1+dfsg' dh_auto_build - cd obj-x86_64-linux-gnu && make -j16 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-x86_64-linux-gnu && make -j15 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/cmtk-3.3.1p1+dfsg -B/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/CMakeFiles /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/build.make Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/depend -make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/DependInfo.cmake --color= make -f Utilities/mxml/CMakeFiles/cmtkMxml.dir/build.make Utilities/mxml/CMakeFiles/cmtkMxml.dir/depend +make -f libs/Numerics/CMakeFiles/cmtkNumerics.dir/build.make libs/Numerics/CMakeFiles/cmtkNumerics.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/Utilities/mxml /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/mxml /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/mxml/CMakeFiles/cmtkMxml.dir/DependInfo.cmake --color= -make -f libs/Numerics/CMakeFiles/cmtkNumerics.dir/build.make libs/Numerics/CMakeFiles/cmtkNumerics.dir/depend +make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/libs/Numerics /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Numerics /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Numerics/CMakeFiles/cmtkNumerics.dir/DependInfo.cmake --color= Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/depend.internal". Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/depend.internal". Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/mxml/CMakeFiles/cmtkMxml.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/mxml/CMakeFiles/cmtkMxml.dir/depend.internal". Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/mxml/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/mxml/CMakeFiles/cmtkMxml.dir/depend.internal". -Scanning dependencies of target cmtkMxml -Scanning dependencies of target NrrdIO -make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make -f Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/build.make Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/build Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Numerics/CMakeFiles/cmtkNumerics.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Numerics/CMakeFiles/cmtkNumerics.dir/depend.internal". Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Numerics/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Numerics/CMakeFiles/cmtkNumerics.dir/depend.internal". +Scanning dependencies of target cmtkMxml +make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f Utilities/mxml/CMakeFiles/cmtkMxml.dir/build.make Utilities/mxml/CMakeFiles/cmtkMxml.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -Scanning dependencies of target cmtkNumerics +Scanning dependencies of target NrrdIO make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make -f libs/Numerics/CMakeFiles/cmtkNumerics.dir/build.make libs/Numerics/CMakeFiles/cmtkNumerics.dir/build -[ 0%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/comment.o -[ 0%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/enumsNrrd.o +make -f Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/build.make Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/NrrdIO.dir/comment.o -c /build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/comment.c -[ 0%] Building C object Utilities/mxml/CMakeFiles/cmtkMxml.dir/mxml-attr.c.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/NrrdIO.dir/enumsNrrd.o -c /build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/enumsNrrd.c -[ 0%] Building C object Utilities/mxml/CMakeFiles/cmtkMxml.dir/mxml-index.c.o +Scanning dependencies of target cmtkNumerics +[ 1%] Building C object Utilities/mxml/CMakeFiles/cmtkMxml.dir/mxml-attr.c.o [ 1%] Building C object Utilities/mxml/CMakeFiles/cmtkMxml.dir/mxml-entity.c.o +[ 1%] Building C object Utilities/mxml/CMakeFiles/cmtkMxml.dir/mxml-index.c.o +make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +[ 1%] Building C object Utilities/mxml/CMakeFiles/cmtkMxml.dir/mxml-get.c.o +[ 2%] Building C object Utilities/mxml/CMakeFiles/cmtkMxml.dir/mxml-file.c.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/mxml && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkMxml_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/mxml -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/cmtkMxml.dir/mxml-attr.c.o -c /build/cmtk-3.3.1p1+dfsg/Utilities/mxml/mxml-attr.c +make -f libs/Numerics/CMakeFiles/cmtkNumerics.dir/build.make libs/Numerics/CMakeFiles/cmtkNumerics.dir/build +[ 2%] Building C object Utilities/mxml/CMakeFiles/cmtkMxml.dir/mxml-private.c.o +[ 2%] Building C object Utilities/mxml/CMakeFiles/cmtkMxml.dir/mxml-set.c.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/mxml && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkMxml_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/mxml -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/cmtkMxml.dir/mxml-entity.c.o -c /build/cmtk-3.3.1p1+dfsg/Utilities/mxml/mxml-entity.c -[ 1%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/mop.o -[ 1%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/string.o +[ 2%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/comment.o +make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/mxml && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkMxml_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/mxml -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/cmtkMxml.dir/mxml-index.c.o -c /build/cmtk-3.3.1p1+dfsg/Utilities/mxml/mxml-index.c -[ 1%] Building C object Utilities/mxml/CMakeFiles/cmtkMxml.dir/mxml-private.c.o +[ 2%] Building C object Utilities/mxml/CMakeFiles/cmtkMxml.dir/mxml-node.c.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/NrrdIO.dir/comment.o -c /build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/comment.c cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/mxml && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkMxml_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/mxml -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/cmtkMxml.dir/mxml-private.c.o -c /build/cmtk-3.3.1p1+dfsg/Utilities/mxml/mxml-private.c -[ 2%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/ap.cxx.o +[ 2%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/enumsNrrd.o +[ 2%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/mop.o +[ 2%] Building C object Utilities/mxml/CMakeFiles/cmtkMxml.dir/mxml-search.c.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/mxml && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkMxml_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/mxml -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/cmtkMxml.dir/mxml-get.c.o -c /build/cmtk-3.3.1p1+dfsg/Utilities/mxml/mxml-get.c +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/NrrdIO.dir/enumsNrrd.o -c /build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/enumsNrrd.c +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/mxml && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkMxml_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/mxml -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/cmtkMxml.dir/mxml-set.c.o -c /build/cmtk-3.3.1p1+dfsg/Utilities/mxml/mxml-set.c +[ 2%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/string.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/NrrdIO.dir/mop.o -c /build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/mop.c -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/NrrdIO.dir/string.o -c /build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/string.c -[ 2%] Building C object Utilities/mxml/CMakeFiles/cmtkMxml.dir/mxml-get.c.o +[ 3%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/ap.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkNumerics.dir/ap.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Numerics/ap.cxx -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/mxml && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkMxml_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/mxml -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/cmtkMxml.dir/mxml-get.c.o -c /build/cmtk-3.3.1p1+dfsg/Utilities/mxml/mxml-get.c -[ 2%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/754.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/NrrdIO.dir/string.o -c /build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/string.c +[ 3%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/754.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/mxml && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkMxml_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/mxml -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/cmtkMxml.dir/mxml-file.c.o -c /build/cmtk-3.3.1p1+dfsg/Utilities/mxml/mxml-file.c +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/mxml && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkMxml_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/mxml -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/cmtkMxml.dir/mxml-node.c.o -c /build/cmtk-3.3.1p1+dfsg/Utilities/mxml/mxml-node.c cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/NrrdIO.dir/754.o -c /build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/754.c -[ 2%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/blas.cxx.o -[ 2%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/bdsvd.cxx.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkNumerics.dir/blas.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Numerics/blas.cxx -[ 3%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/defaultsNrrd.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/mxml && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkMxml_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/mxml -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/cmtkMxml.dir/mxml-search.c.o -c /build/cmtk-3.3.1p1+dfsg/Utilities/mxml/mxml-search.c +[ 4%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/defaultsNrrd.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/NrrdIO.dir/defaultsNrrd.o -c /build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/defaultsNrrd.c -[ 3%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/bidiagonal.cxx.o +[ 4%] Building C object Utilities/mxml/CMakeFiles/cmtkMxml.dir/mxml-string.c.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/mxml && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkMxml_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/mxml -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/cmtkMxml.dir/mxml-string.c.o -c /build/cmtk-3.3.1p1+dfsg/Utilities/mxml/mxml-string.c +[ 4%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/bdsvd.cxx.o +[ 4%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/parseAir.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkNumerics.dir/bdsvd.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Numerics/bdsvd.cxx -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkNumerics.dir/bidiagonal.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Numerics/bidiagonal.cxx -[ 3%] Building C object Utilities/mxml/CMakeFiles/cmtkMxml.dir/mxml-set.c.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/mxml && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkMxml_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/mxml -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/cmtkMxml.dir/mxml-set.c.o -c /build/cmtk-3.3.1p1+dfsg/Utilities/mxml/mxml-set.c -[ 3%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/parseAir.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/NrrdIO.dir/parseAir.o -c /build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/parseAir.c -[ 4%] Building C object Utilities/mxml/CMakeFiles/cmtkMxml.dir/mxml-file.c.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/mxml && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkMxml_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/mxml -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/cmtkMxml.dir/mxml-file.c.o -c /build/cmtk-3.3.1p1+dfsg/Utilities/mxml/mxml-file.c [ 4%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/dio.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/NrrdIO.dir/dio.o -c /build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/dio.c -[ 4%] Building C object Utilities/mxml/CMakeFiles/cmtkMxml.dir/mxml-node.c.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/mxml && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkMxml_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/mxml -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/cmtkMxml.dir/mxml-node.c.o -c /build/cmtk-3.3.1p1+dfsg/Utilities/mxml/mxml-node.c -[ 4%] Building C object Utilities/mxml/CMakeFiles/cmtkMxml.dir/mxml-search.c.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/mxml && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkMxml_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/mxml -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/cmtkMxml.dir/mxml-search.c.o -c /build/cmtk-3.3.1p1+dfsg/Utilities/mxml/mxml-search.c -[ 4%] Building C object Utilities/mxml/CMakeFiles/cmtkMxml.dir/mxml-string.c.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/mxml && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkMxml_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/mxml -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/cmtkMxml.dir/mxml-string.c.o -c /build/cmtk-3.3.1p1+dfsg/Utilities/mxml/mxml-string.c [ 4%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/format.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/NrrdIO.dir/format.o -c /build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/format.c +[ 4%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/bidiagonal.cxx.o [ 4%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/parseNrrd.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkNumerics.dir/bidiagonal.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Numerics/bidiagonal.cxx cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/NrrdIO.dir/parseNrrd.o -c /build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/parseNrrd.c [ 5%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/formatEPS.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/NrrdIO.dir/formatEPS.o -c /build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/formatEPS.c +[ 5%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/blas.cxx.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkNumerics.dir/blas.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Numerics/blas.cxx [ 5%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/encoding.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/NrrdIO.dir/encoding.o -c /build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/encoding.c -[ 5%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/cholesky.cxx.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkNumerics.dir/cholesky.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Numerics/cholesky.cxx [ 5%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/formatNRRD.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/NrrdIO.dir/formatNRRD.o -c /build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/formatNRRD.c [ 5%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/encodingAscii.o -[ 5%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/formatPNG.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/NrrdIO.dir/encodingAscii.o -c /build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/encodingAscii.c +[ 5%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/cholesky.cxx.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkNumerics.dir/cholesky.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Numerics/cholesky.cxx +[ 5%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/formatPNG.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/NrrdIO.dir/formatPNG.o -c /build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/formatPNG.c -[ 6%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/encodingBzip2.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/NrrdIO.dir/encodingBzip2.o -c /build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/encodingBzip2.c -[ 7%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/det.cxx.o +[ 6%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/det.cxx.o +[ 7%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/encodingBzip2.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkNumerics.dir/det.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Numerics/det.cxx +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/NrrdIO.dir/encodingBzip2.o -c /build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/encodingBzip2.c [ 7%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/formatPNM.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/NrrdIO.dir/formatPNM.o -c /build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/formatPNM.c [ 7%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/accessors.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/NrrdIO.dir/accessors.o -c /build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/accessors.c -[ 7%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/formatText.o [ 7%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/encodingGzip.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/NrrdIO.dir/formatText.o -c /build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/formatText.c cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/NrrdIO.dir/encodingGzip.o -c /build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/encodingGzip.c +[ 7%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/formatText.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/NrrdIO.dir/formatText.o -c /build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/formatText.c [ 8%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/array.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/NrrdIO.dir/array.o -c /build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/array.c [ 8%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/encodingHex.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/NrrdIO.dir/encodingHex.o -c /build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/encodingHex.c [ 8%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/formatVTK.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/NrrdIO.dir/formatVTK.o -c /build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/formatVTK.c -[ 8%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/read.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/NrrdIO.dir/read.o -c /build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/read.c [ 8%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/arraysNrrd.o +[ 8%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/read.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/NrrdIO.dir/arraysNrrd.o -c /build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/arraysNrrd.c +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/NrrdIO.dir/read.o -c /build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/read.c [ 9%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/encodingRaw.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/NrrdIO.dir/encodingRaw.o -c /build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/encodingRaw.c [ 9%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/gzio.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/NrrdIO.dir/gzio.o -c /build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/gzio.c +[ 9%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/gammaf.cxx.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkNumerics.dir/gammaf.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Numerics/gammaf.cxx [ 9%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/reorder.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/NrrdIO.dir/reorder.o -c /build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/reorder.c [ 9%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/write.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/NrrdIO.dir/write.o -c /build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/write.c +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/NrrdIO.dir/reorder.o -c /build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/reorder.c [ 9%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/axis.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/NrrdIO.dir/axis.o -c /build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/axis.c +[ 9%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/hessenberg.cxx.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkNumerics.dir/hessenberg.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Numerics/hessenberg.cxx [ 10%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/endianAir.o +[ 10%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/hsschur.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/NrrdIO.dir/endianAir.o -c /build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/endianAir.c +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkNumerics.dir/hsschur.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Numerics/hsschur.cxx +[ 10%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/ibetaf.cxx.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkNumerics.dir/ibetaf.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Numerics/ibetaf.cxx [ 10%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/keyvalue.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/NrrdIO.dir/keyvalue.o -c /build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/keyvalue.c -[ 10%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/biffbiff.o +[ 11%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/lbfgsb.cxx.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkNumerics.dir/lbfgsb.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Numerics/lbfgsb.cxx +[ 11%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/biffbiff.o +[ 11%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/lq.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/NrrdIO.dir/biffbiff.o -c /build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/biffbiff.c -[ 10%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/gammaf.cxx.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkNumerics.dir/gammaf.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Numerics/gammaf.cxx -[ 10%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/biffmsg.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/NrrdIO.dir/biffmsg.o -c /build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/biffmsg.c -[ 10%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/hessenberg.cxx.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkNumerics.dir/hessenberg.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Numerics/hessenberg.cxx -[ 10%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/endianNrrd.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/NrrdIO.dir/endianNrrd.o -c /build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/endianNrrd.c -[ 11%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/methodsNrrd.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/NrrdIO.dir/methodsNrrd.o -c /build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/methodsNrrd.c -[ 11%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/hsschur.cxx.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkNumerics.dir/hsschur.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Numerics/hsschur.cxx -[ 11%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/sane.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/NrrdIO.dir/sane.o -c /build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/sane.c -[ 11%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/enum.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/NrrdIO.dir/enum.o -c /build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/enum.c -[ 11%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/ibetaf.cxx.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkNumerics.dir/ibetaf.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Numerics/ibetaf.cxx -[ 11%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/miscAir.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/NrrdIO.dir/miscAir.o -c /build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/miscAir.c +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkNumerics.dir/lq.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Numerics/lq.cxx [ 11%] Linking C shared library ../../bin/libcmtkMxml.so cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/mxml && /usr/bin/cmake -E cmake_link_script CMakeFiles/cmtkMxml.dir/link.txt --verbose=1 -/usr/bin/cc -fPIC -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -shared -Wl,-soname,libcmtkMxml.so -o ../../bin/libcmtkMxml.so CMakeFiles/cmtkMxml.dir/mxml-attr.c.o CMakeFiles/cmtkMxml.dir/mxml-entity.c.o CMakeFiles/cmtkMxml.dir/mxml-index.c.o CMakeFiles/cmtkMxml.dir/mxml-private.c.o CMakeFiles/cmtkMxml.dir/mxml-get.c.o CMakeFiles/cmtkMxml.dir/mxml-set.c.o CMakeFiles/cmtkMxml.dir/mxml-file.c.o CMakeFiles/cmtkMxml.dir/mxml-node.c.o CMakeFiles/cmtkMxml.dir/mxml-search.c.o CMakeFiles/cmtkMxml.dir/mxml-string.c.o -[ 12%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/lbfgsb.cxx.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkNumerics.dir/lbfgsb.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Numerics/lbfgsb.cxx -[ 12%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/simple.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/NrrdIO.dir/simple.o -c /build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/simple.c -[ 12%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/lq.cxx.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkNumerics.dir/lq.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Numerics/lq.cxx -[ 12%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/lu.cxx.o +[ 11%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/lu.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkNumerics.dir/lu.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Numerics/lu.cxx +/usr/bin/cc -fPIC -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -shared -Wl,-soname,libcmtkMxml.so -o ../../bin/libcmtkMxml.so CMakeFiles/cmtkMxml.dir/mxml-attr.c.o CMakeFiles/cmtkMxml.dir/mxml-entity.c.o CMakeFiles/cmtkMxml.dir/mxml-index.c.o CMakeFiles/cmtkMxml.dir/mxml-private.c.o CMakeFiles/cmtkMxml.dir/mxml-get.c.o CMakeFiles/cmtkMxml.dir/mxml-set.c.o CMakeFiles/cmtkMxml.dir/mxml-file.c.o CMakeFiles/cmtkMxml.dir/mxml-node.c.o CMakeFiles/cmtkMxml.dir/mxml-search.c.o CMakeFiles/cmtkMxml.dir/mxml-string.c.o +[ 11%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/normaldistr.cxx.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkNumerics.dir/normaldistr.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Numerics/normaldistr.cxx +[ 11%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/biffmsg.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/NrrdIO.dir/biffmsg.o -c /build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/biffmsg.c +[ 11%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/nsevd.cxx.o make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 12%] Built target cmtkMxml +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkNumerics.dir/nsevd.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Numerics/nsevd.cxx +[ 11%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/endianNrrd.o +[ 11%] Built target cmtkMxml make -f libs/System/CMakeFiles/cmtkSystem.dir/build.make libs/System/CMakeFiles/cmtkSystem.dir/depend +[ 12%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/methodsNrrd.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/NrrdIO.dir/endianNrrd.o -c /build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/endianNrrd.c +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/NrrdIO.dir/methodsNrrd.o -c /build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/methodsNrrd.c make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/libs/System /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/System /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/System/CMakeFiles/cmtkSystem.dir/DependInfo.cmake --color= -[ 12%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/normaldistr.cxx.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkNumerics.dir/normaldistr.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Numerics/normaldistr.cxx +[ 12%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/sane.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/NrrdIO.dir/sane.o -c /build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/sane.c Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/System/CMakeFiles/cmtkSystem.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/System/CMakeFiles/cmtkSystem.dir/depend.internal". Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/System/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/System/CMakeFiles/cmtkSystem.dir/depend.internal". -[ 12%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/nsevd.cxx.o Scanning dependencies of target cmtkSystem make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f libs/System/CMakeFiles/cmtkSystem.dir/build.make libs/System/CMakeFiles/cmtkSystem.dir/build -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkNumerics.dir/nsevd.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Numerics/nsevd.cxx make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +[ 12%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkCommandLine.cxx.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkSystem.dir/cmtkCommandLine.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.cxx +[ 12%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/enum.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/NrrdIO.dir/enum.o -c /build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/enum.c +[ 12%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/miscAir.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/NrrdIO.dir/miscAir.o -c /build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/miscAir.c [ 13%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/qr.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkNumerics.dir/qr.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Numerics/qr.cxx -[ 13%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkCommandLine.cxx.o +[ 13%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/simple.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/NrrdIO.dir/simple.o -c /build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/simple.c [ 13%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/reflections.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkNumerics.dir/reflections.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Numerics/reflections.cxx -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkSystem.dir/cmtkCommandLine.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.cxx +[ 13%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/rotations.cxx.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkNumerics.dir/rotations.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Numerics/rotations.cxx +[ 13%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/sblas.cxx.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkNumerics.dir/sblas.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Numerics/sblas.cxx [ 13%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkCommandLineCallback.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkSystem.dir/cmtkCommandLineCallback.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLineCallback.cxx +[ 13%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/sevd.cxx.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkNumerics.dir/sevd.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Numerics/sevd.cxx +[ 13%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/spddet.cxx.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkNumerics.dir/spddet.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Numerics/spddet.cxx +In file included from /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.cxx:33: +/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); + | ^~~~~ [ 14%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkCommandLineItem.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkSystem.dir/cmtkCommandLineItem.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLineItem.cxx -[ 14%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/rotations.cxx.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkNumerics.dir/rotations.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Numerics/rotations.cxx -[ 14%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/sblas.cxx.o -[ 14%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/sevd.cxx.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkNumerics.dir/sblas.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Numerics/sblas.cxx -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkNumerics.dir/sevd.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Numerics/sevd.cxx +/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.cxx:123:58: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 123 | CommandLine::Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ) + | ^~~~~ [ 15%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/studenttdistr.cxx.o -[ 14%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/spddet.cxx.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkNumerics.dir/spddet.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Numerics/spddet.cxx cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkNumerics.dir/studenttdistr.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Numerics/studenttdistr.cxx +[ 15%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/studentttests.cxx.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkNumerics.dir/studentttests.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Numerics/studentttests.cxx +[ 15%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/svd.cxx.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkNumerics.dir/svd.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Numerics/svd.cxx [ 16%] Linking C shared library ../../bin/libNrrdIO.so cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cmake -E cmake_link_script CMakeFiles/NrrdIO.dir/link.txt --verbose=1 -[ 16%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/studentttests.cxx.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkNumerics.dir/studentttests.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Numerics/studentttests.cxx /usr/bin/cc -fPIC -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -shared -Wl,-soname,libNrrdIO.so -o ../../bin/libNrrdIO.so CMakeFiles/NrrdIO.dir/comment.o CMakeFiles/NrrdIO.dir/enumsNrrd.o CMakeFiles/NrrdIO.dir/mop.o CMakeFiles/NrrdIO.dir/string.o CMakeFiles/NrrdIO.dir/754.o CMakeFiles/NrrdIO.dir/defaultsNrrd.o CMakeFiles/NrrdIO.dir/parseAir.o CMakeFiles/NrrdIO.dir/dio.o CMakeFiles/NrrdIO.dir/format.o CMakeFiles/NrrdIO.dir/parseNrrd.o CMakeFiles/NrrdIO.dir/formatEPS.o CMakeFiles/NrrdIO.dir/encoding.o CMakeFiles/NrrdIO.dir/formatNRRD.o CMakeFiles/NrrdIO.dir/encodingAscii.o CMakeFiles/NrrdIO.dir/formatPNG.o CMakeFiles/NrrdIO.dir/encodingBzip2.o CMakeFiles/NrrdIO.dir/formatPNM.o CMakeFiles/NrrdIO.dir/accessors.o CMakeFiles/NrrdIO.dir/encodingGzip.o CMakeFiles/NrrdIO.dir/formatText.o CMakeFiles/NrrdIO.dir/array.o CMakeFiles/NrrdIO.dir/encodingHex.o CMakeFiles/NrrdIO.dir/formatVTK.o CMakeFiles/NrrdIO.dir/read.o CMakeFiles/NrrdIO.dir/arraysNrrd.o CMakeFiles/NrrdIO.dir/encodingRaw.o CMakeFiles/NrrdIO.dir/gzio.o CMakeFiles/NrrdIO.dir/reorder.o CMakeFiles/NrrdIO.dir/write.o CMakeFiles/NrrdIO.dir/axis.o CMakeFiles/NrrdIO.dir/endianAir.o CMakeFiles/NrrdIO.dir/keyvalue.o CMakeFiles/NrrdIO.dir/biffbiff.o CMakeFiles/NrrdIO.dir/biffmsg.o CMakeFiles/NrrdIO.dir/endianNrrd.o CMakeFiles/NrrdIO.dir/methodsNrrd.o CMakeFiles/NrrdIO.dir/sane.o CMakeFiles/NrrdIO.dir/enum.o CMakeFiles/NrrdIO.dir/miscAir.o CMakeFiles/NrrdIO.dir/simple.o -lz -make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 16%] Built target NrrdIO -[ 16%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/svd.cxx.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkNumerics.dir/svd.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Numerics/svd.cxx [ 16%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/tdevd.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkNumerics.dir/tdevd.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Numerics/tdevd.cxx [ 16%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/tridiagonal.cxx.o @@ -1434,47 +1474,38 @@ /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); | ^~~~~ -In file included from /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLineItem.cxx:35: -/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); - | ^~~~~ -In file included from /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.cxx:33: -/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); - | ^~~~~ +make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +[ 16%] Built target NrrdIO +[ 16%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkCommandLineKeyToAction.cxx.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkSystem.dir/cmtkCommandLineKeyToAction.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLineKeyToAction.cxx [ 17%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/mersenne.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkNumerics.dir/mersenne.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Numerics/mersenne.cxx -/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.cxx:123:58: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 123 | CommandLine::Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ) - | ^~~~~ -[ 17%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkCommandLineKeyToAction.cxx.o [ 17%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkCommandLineKeyToActionEnum.cxx.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkSystem.dir/cmtkCommandLineKeyToAction.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLineKeyToAction.cxx cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkSystem.dir/cmtkCommandLineKeyToActionEnum.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLineKeyToActionEnum.cxx [ 17%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkCommandLineKeyToActionSingle.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkSystem.dir/cmtkCommandLineKeyToActionSingle.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLineKeyToActionSingle.cxx +[ 17%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkCommandLineNonOptionParameter.cxx.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkSystem.dir/cmtkCommandLineNonOptionParameter.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLineNonOptionParameter.cxx +In file included from /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLineItem.cxx:35: +/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); + | ^~~~~ [ 18%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkCommandLineNonOptionParameterVector.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkSystem.dir/cmtkCommandLineNonOptionParameterVector.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLineNonOptionParameterVector.cxx -[ 18%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkCommandLineNonOptionParameter.cxx.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkSystem.dir/cmtkCommandLineNonOptionParameter.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLineNonOptionParameter.cxx [ 18%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkCommandLineHelp.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkSystem.dir/cmtkCommandLineHelp.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLineHelp.cxx [ 18%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkCommandLineMan.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkSystem.dir/cmtkCommandLineMan.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLineMan.cxx +[ 18%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkCommandLineXML.cxx.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkSystem.dir/cmtkCommandLineXML.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLineXML.cxx /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLineMan.cxx:61:45: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 61 | StdOut << ".TH " << cmd << " \"1\" \"" << __DATE__ << "\" \"CMTK " << ppit->second << "\" \"The Computational Morphometry Toolkit\"\n"; | ^~~~~~~~ -[ 18%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkCommandLineXML.cxx.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkSystem.dir/cmtkCommandLineXML.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLineXML.cxx -[ 18%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkCommandLineWiki.cxx.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkSystem.dir/cmtkCommandLineWiki.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLineWiki.cxx -[ 19%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkCompressedStream.cxx.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkSystem.dir/cmtkCompressedStream.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCompressedStream.cxx -In file included from /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLineKeyToActionSingle.cxx:33: +In file included from /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLineKeyToActionEnum.cxx:33: /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); | ^~~~~ -In file included from /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLineKeyToActionEnum.cxx:33: +In file included from /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLineKeyToActionSingle.cxx:33: /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); | ^~~~~ @@ -1482,15 +1513,21 @@ /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); | ^~~~~ -In file included from /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLineNonOptionParameter.cxx:31: +In file included from /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLineHelp.cxx:34: /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); | ^~~~~ -In file included from /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLineNonOptionParameterVector.cxx:31: +In file included from /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLineNonOptionParameter.cxx:31: /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); | ^~~~~ -In file included from /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLineHelp.cxx:34: +[ 18%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkCommandLineWiki.cxx.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkSystem.dir/cmtkCommandLineWiki.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLineWiki.cxx +[ 19%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkCompressedStream.cxx.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkSystem.dir/cmtkCompressedStream.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCompressedStream.cxx +[ 19%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkCompressedStreamFile.cxx.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkSystem.dir/cmtkCompressedStreamFile.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCompressedStreamFile.cxx +In file included from /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLineNonOptionParameterVector.cxx:31: /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); | ^~~~~ @@ -1498,20 +1535,18 @@ /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); | ^~~~~ -[ 19%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkCompressedStreamFile.cxx.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkSystem.dir/cmtkCompressedStreamFile.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCompressedStreamFile.cxx [ 19%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkCompressedStreamPipe.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkSystem.dir/cmtkCompressedStreamPipe.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCompressedStreamPipe.cxx In file included from /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLineXML.cxx:34: /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); | ^~~~~ -[ 19%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkCompressedStreamReaderBase.cxx.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkSystem.dir/cmtkCompressedStreamReaderBase.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCompressedStreamReaderBase.cxx In file included from /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLineWiki.cxx:34: /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); | ^~~~~ +[ 19%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkCompressedStreamReaderBase.cxx.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkSystem.dir/cmtkCompressedStreamReaderBase.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCompressedStreamReaderBase.cxx [ 19%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkCompressedStreamZlib.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkSystem.dir/cmtkCompressedStreamZlib.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCompressedStreamZlib.cxx [ 19%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkConsole.cxx.o @@ -1523,18 +1558,18 @@ [ 20%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkMountPoints.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkSystem.dir/cmtkMountPoints.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkMountPoints.cxx [ 20%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkProgress.cxx.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkSystem.dir/cmtkProgress.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkProgress.cxx [ 20%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkProgressConsole.cxx.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkSystem.dir/cmtkProgress.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkProgress.cxx cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkSystem.dir/cmtkProgressConsole.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkProgressConsole.cxx [ 21%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkRegressionTracker.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkSystem.dir/cmtkRegressionTracker.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkRegressionTracker.cxx [ 21%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkStackBacktrace.cxx.o -[ 21%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkStrUtility.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkSystem.dir/cmtkStackBacktrace.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkStackBacktrace.cxx +[ 21%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkStrUtility.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkSystem.dir/cmtkStrUtility.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkStrUtility.cxx [ 21%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkThreads.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkSystem.dir/cmtkThreads.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkThreads.cxx -[ 21%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkThreadPoolThreads.cxx.o +[ 22%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkThreadPoolThreads.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkSystem.dir/cmtkThreadPoolThreads.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkThreadPoolThreads.cxx [ 22%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkThreadSemaphore.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkSystem.dir/cmtkThreadSemaphore.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkThreadSemaphore.cxx @@ -1567,33 +1602,33 @@ make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' [ 22%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkActiveDeformationModel.cxx.o [ 22%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkActiveShapeModel.cxx.o -[ 23%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkAffineXform.cxx.o -[ 23%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkAffineXformUniformVolume.cxx.o -[ 23%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkAnatomicalOrientation.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkBase.dir/cmtkActiveDeformationModel.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Base/cmtkActiveDeformationModel.cxx +[ 23%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkAffineXform.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkBase.dir/cmtkActiveShapeModel.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Base/cmtkActiveShapeModel.cxx -[ 23%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkAnatomicalOrientationBase.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkBase.dir/cmtkAffineXform.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Base/cmtkAffineXform.cxx +[ 23%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkAffineXformUniformVolume.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkBase.dir/cmtkAffineXformUniformVolume.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Base/cmtkAffineXformUniformVolume.cxx -[ 23%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkAnatomicalOrientationPermutationMatrix.cxx.o +[ 23%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkAnatomicalOrientation.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkBase.dir/cmtkAnatomicalOrientation.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Base/cmtkAnatomicalOrientation.cxx +[ 23%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkAnatomicalOrientationBase.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkBase.dir/cmtkAnatomicalOrientationBase.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Base/cmtkAnatomicalOrientationBase.cxx +[ 23%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkAnatomicalOrientationPermutationMatrix.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkBase.dir/cmtkAnatomicalOrientationPermutationMatrix.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Base/cmtkAnatomicalOrientationPermutationMatrix.cxx [ 23%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkBitVector.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkBase.dir/cmtkBitVector.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Base/cmtkBitVector.cxx [ 24%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkCompatibilityMatrix4x4.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkBase.dir/cmtkCompatibilityMatrix4x4.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Base/cmtkCompatibilityMatrix4x4.cxx [ 24%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkDataGrid.cxx.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkBase.dir/cmtkDataGrid.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Base/cmtkDataGrid.cxx [ 24%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkDataGrid_Crop.cxx.o -[ 24%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkDataGridFilter.cxx.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkBase.dir/cmtkDataGrid.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Base/cmtkDataGrid.cxx cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkBase.dir/cmtkDataGrid_Crop.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Base/cmtkDataGrid_Crop.cxx +[ 24%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkDataGridFilter.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkBase.dir/cmtkDataGridFilter.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Base/cmtkDataGridFilter.cxx [ 24%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkDataGridConnectedComponents.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkBase.dir/cmtkDataGridConnectedComponents.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Base/cmtkDataGridConnectedComponents.cxx [ 25%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkDataGridLocalCorrelation.cxx.o -[ 25%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkDataGridMorphologicalOperators.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkBase.dir/cmtkDataGridLocalCorrelation.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Base/cmtkDataGridLocalCorrelation.cxx +[ 25%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkDataGridMorphologicalOperators.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkBase.dir/cmtkDataGridMorphologicalOperators.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Base/cmtkDataGridMorphologicalOperators.cxx [ 25%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkDeformationField.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkBase.dir/cmtkDeformationField.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Base/cmtkDeformationField.cxx @@ -1647,8 +1682,6 @@ cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkBase.dir/cmtkImageOperationRegionFilter.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Base/cmtkImageOperationRegionFilter.cxx [ 30%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkImageOperationResampleIsotropic.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkBase.dir/cmtkImageOperationResampleIsotropic.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Base/cmtkImageOperationResampleIsotropic.cxx -[ 30%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkImageOperationScaleToRange.cxx.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkBase.dir/cmtkImageOperationScaleToRange.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Base/cmtkImageOperationScaleToRange.cxx /build/cmtk-3.3.1p1+dfsg/libs/Base/cmtkImageOperationCropThreshold.cxx: In member function 'virtual cmtk::UniformVolume::SmartPtr cmtk::ImageOperationCropThreshold::Apply(cmtk::UniformVolume::SmartPtr&)': /build/cmtk-3.3.1p1+dfsg/libs/Base/cmtkImageOperationCropThreshold.cxx:41:24: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long long int' [-Wformat=] 41 | printf( "AutoCrop %d,%d,%d,%d,%d,%d\n", cropRegion.From()[0], cropRegion.From()[1], cropRegion.From()[2], cropRegion.To()[0], cropRegion.To()[1], cropRegion.To()[2] ); @@ -1686,6 +1719,8 @@ | | | int | %lld +[ 30%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkImageOperationScaleToRange.cxx.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkBase.dir/cmtkImageOperationScaleToRange.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Base/cmtkImageOperationScaleToRange.cxx [ 30%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkImageOperationThreshold.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkBase.dir/cmtkImageOperationThreshold.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Base/cmtkImageOperationThreshold.cxx [ 31%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkImageOperationOtsuThreshold.cxx.o @@ -1696,6 +1731,10 @@ cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkBase.dir/cmtkImageOperationRevert.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Base/cmtkImageOperationRevert.cxx [ 31%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkJointHistogram.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkBase.dir/cmtkJointHistogram.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Base/cmtkJointHistogram.cxx +In file included from /build/cmtk-3.3.1p1+dfsg/libs/Base/cmtkImageOperationHistogramEqualization.cxx:34: +/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); + | ^~~~~ [ 31%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkJointHistogramBase.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkBase.dir/cmtkJointHistogramBase.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Base/cmtkJointHistogramBase.cxx /build/cmtk-3.3.1p1+dfsg/libs/Base/cmtkImageOperationDownsample.cxx: In static member function 'static void cmtk::ImageOperationDownsample::NewGeneric(bool, const char*)': @@ -1719,20 +1758,16 @@ | %5lld [ 32%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkLandmark.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkBase.dir/cmtkLandmark.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Base/cmtkLandmark.cxx -In file included from /build/cmtk-3.3.1p1+dfsg/libs/Base/cmtkImageOperationHistogramEqualization.cxx:34: -/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); - | ^~~~~ -In file included from /build/cmtk-3.3.1p1+dfsg/libs/Base/cmtkImageOperationScaleToRange.cxx:33: -/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); - | ^~~~~ [ 32%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkLandmarkPair.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkBase.dir/cmtkLandmarkPair.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Base/cmtkLandmarkPair.cxx [ 32%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkLandmarkList.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkBase.dir/cmtkLandmarkList.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Base/cmtkLandmarkList.cxx [ 32%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkLandmarkPairList.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkBase.dir/cmtkLandmarkPairList.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Base/cmtkLandmarkPairList.cxx +In file included from /build/cmtk-3.3.1p1+dfsg/libs/Base/cmtkImageOperationScaleToRange.cxx:33: +/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); + | ^~~~~ [ 32%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkMagphanEMR051.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkBase.dir/cmtkMagphanEMR051.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Base/cmtkMagphanEMR051.cxx [ 33%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkMagphanEMR051_GetPhantomImage.cxx.o @@ -1798,8 +1833,8 @@ [ 38%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkUniformVolume_Differential.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkBase.dir/cmtkUniformVolume_Differential.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Base/cmtkUniformVolume_Differential.cxx [ 39%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkUniformVolume_Resample.cxx.o -[ 39%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkUniformVolume_Space.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkBase.dir/cmtkUniformVolume_Resample.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Base/cmtkUniformVolume_Resample.cxx +[ 39%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkUniformVolume_Space.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkBase.dir/cmtkUniformVolume_Space.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Base/cmtkUniformVolume_Space.cxx [ 39%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkUniformVolumeGaussianFilter.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkBase.dir/cmtkUniformVolumeGaussianFilter.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Base/cmtkUniformVolumeGaussianFilter.cxx @@ -1844,32 +1879,32 @@ make -f libs/IO/CMakeFiles/cmtkIO.dir/build.make libs/IO/CMakeFiles/cmtkIO.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' [ 42%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkAffineXformITKIO.cxx.o -[ 42%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkSplineWarpXformITKIO.cxx.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkIO.dir/cmtkAffineXformITKIO.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/IO/cmtkAffineXformITKIO.cxx -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkIO.dir/cmtkSplineWarpXformITKIO.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/IO/cmtkSplineWarpXformITKIO.cxx +[ 42%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkClassStreamPolynomialXform.cxx.o [ 42%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkClassStreamAffineXform.cxx.o [ 43%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkClassStreamParametricPlane.cxx.o +[ 43%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkSplineWarpXformITKIO.cxx.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkIO.dir/cmtkAffineXformITKIO.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/IO/cmtkAffineXformITKIO.cxx +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkIO.dir/cmtkSplineWarpXformITKIO.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/IO/cmtkSplineWarpXformITKIO.cxx cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkIO.dir/cmtkClassStreamAffineXform.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/IO/cmtkClassStreamAffineXform.cxx +[ 43%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkClassStreamStudyList.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkIO.dir/cmtkClassStreamParametricPlane.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/IO/cmtkClassStreamParametricPlane.cxx -[ 43%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkClassStreamPolynomialXform.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkIO.dir/cmtkClassStreamPolynomialXform.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/IO/cmtkClassStreamPolynomialXform.cxx -[ 43%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkFileFormat.cxx.o -[ 43%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkClassStreamStudyList.cxx.o -[ 43%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkClassStreamWarpXform.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkIO.dir/cmtkClassStreamStudyList.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/IO/cmtkClassStreamStudyList.cxx +[ 43%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkClassStreamWarpXform.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkIO.dir/cmtkClassStreamWarpXform.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/IO/cmtkClassStreamWarpXform.cxx -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkIO.dir/cmtkFileFormat.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/IO/cmtkFileFormat.cxx +[ 43%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkFileFormat.cxx.o [ 44%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkGroupwiseRegistrationFunctionalIO.cxx.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkIO.dir/cmtkFileFormat.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/IO/cmtkFileFormat.cxx cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkIO.dir/cmtkGroupwiseRegistrationFunctionalIO.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/IO/cmtkGroupwiseRegistrationFunctionalIO.cxx [ 44%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkImageFileDICOM.cxx.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkIO.dir/cmtkImageFileDICOM.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/IO/cmtkImageFileDICOM.cxx [ 44%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkImageOperationApplyMask.cxx.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkIO.dir/cmtkImageOperationApplyMask.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/IO/cmtkImageOperationApplyMask.cxx +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkIO.dir/cmtkImageFileDICOM.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/IO/cmtkImageFileDICOM.cxx [ 44%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkImageOperationMatchIntensities.cxx.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkIO.dir/cmtkImageOperationMatchIntensities.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/IO/cmtkImageOperationMatchIntensities.cxx +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkIO.dir/cmtkImageOperationApplyMask.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/IO/cmtkImageOperationApplyMask.cxx [ 44%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkImageStackDICOM.cxx.o -[ 45%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkLandmarkIO.cxx.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkIO.dir/cmtkImageOperationMatchIntensities.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/IO/cmtkImageOperationMatchIntensities.cxx cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkIO.dir/cmtkImageStackDICOM.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/IO/cmtkImageStackDICOM.cxx +[ 45%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkLandmarkIO.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkIO.dir/cmtkLandmarkIO.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/IO/cmtkLandmarkIO.cxx [ 45%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkLandmarkListIO.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkIO.dir/cmtkLandmarkListIO.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/IO/cmtkLandmarkListIO.cxx @@ -1879,8 +1914,6 @@ cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkIO.dir/cmtkSegmentationLabelIO.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/IO/cmtkSegmentationLabelIO.cxx [ 45%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkSiemensCSAHeader.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkIO.dir/cmtkSiemensCSAHeader.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/IO/cmtkSiemensCSAHeader.cxx -[ 45%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkStudy.cxx.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkIO.dir/cmtkStudy.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/IO/cmtkStudy.cxx In file included from /build/cmtk-3.3.1p1+dfsg/libs/IO/cmtkImageFileDICOM.cxx:33: /build/cmtk-3.3.1p1+dfsg/libs/IO/cmtkImageFileDICOM.h:179:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 179 | std::auto_ptr m_Dataset; @@ -1981,8 +2014,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -[ 46%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkStudyList.cxx.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkIO.dir/cmtkStudyList.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/IO/cmtkStudyList.cxx /build/cmtk-3.3.1p1+dfsg/libs/IO/cmtkImageFileDICOM.cxx:170:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 170 | this->m_Document = std::auto_ptr( new DiDocument( this->m_Dataset.get(), this->m_Dataset->getOriginalXfer(), CIF_AcrNemaCompatibility ) ); | ^~~~~~~~ @@ -2002,6 +2033,12 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +[ 45%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkStudy.cxx.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkIO.dir/cmtkStudy.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/IO/cmtkStudy.cxx +[ 45%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkTypedStream.cxx.o +[ 46%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkStudyList.cxx.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkIO.dir/cmtkStudyList.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/IO/cmtkStudyList.cxx +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkIO.dir/cmtkTypedStream.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/IO/cmtkTypedStream.cxx In file included from /build/cmtk-3.3.1p1+dfsg/libs/IO/cmtkImageStackDICOM.h:38, from /build/cmtk-3.3.1p1+dfsg/libs/IO/cmtkImageStackDICOM.cxx:33: /build/cmtk-3.3.1p1+dfsg/libs/IO/cmtkImageFileDICOM.h:179:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -2069,8 +2106,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -[ 46%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkTypedStream.cxx.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkIO.dir/cmtkTypedStream.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/IO/cmtkTypedStream.cxx [ 46%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkTypedStreamInput.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkIO.dir/cmtkTypedStreamInput.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/IO/cmtkTypedStreamInput.cxx [ 46%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkTypedStreamOutput.cxx.o @@ -2091,21 +2126,6 @@ cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileNifti.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/IO/cmtkVolumeFromFileNifti.cxx [ 48%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileVanderbilt.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileVanderbilt.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/IO/cmtkVolumeFromFileVanderbilt.cxx -[ 48%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkVolumeFromSlices.cxx.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkIO.dir/cmtkVolumeFromSlices.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/IO/cmtkVolumeFromSlices.cxx -/build/cmtk-3.3.1p1+dfsg/libs/IO/cmtkTypedStreamOutput.cxx: In member function 'cmtk::TypedStream::Condition cmtk::TypedStreamOutput::WriteIntArray(const char*, const long long int*, int, int)': -/build/cmtk-3.3.1p1+dfsg/libs/IO/cmtkTypedStreamOutput.cxx:564:25: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'long long int' [-Wformat=] - 564 | fprintf( File, "%ld ", array[i] ); - | ~~^ ~~~~~~~~ - | | | - | long int long long int - | %lld -[ 48%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkVolumeIO.cxx.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkIO.dir/cmtkVolumeIO.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/IO/cmtkVolumeIO.cxx -[ 48%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkXformIO.cxx.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkIO.dir/cmtkXformIO.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/IO/cmtkXformIO.cxx -[ 49%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkXformListIO.cxx.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkIO.dir/cmtkXformListIO.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/IO/cmtkXformListIO.cxx /build/cmtk-3.3.1p1+dfsg/libs/IO/cmtkVolumeFromFileMetaFile.cxx: In static member function 'static void cmtk::VolumeFromFile::WriteMetaImage(const string&, const cmtk::UniformVolume&)': /build/cmtk-3.3.1p1+dfsg/libs/IO/cmtkVolumeFromFileMetaFile.cxx:87:33: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long long int' [-Wformat=] 87 | fprintf( outfile, "DimSize = %d %d %d\n", volume.m_Dims[AXIS_X], volume.m_Dims[AXIS_Y], volume.m_Dims[AXIS_Z] ); @@ -2125,14 +2145,29 @@ | | | int | %lld +/build/cmtk-3.3.1p1+dfsg/libs/IO/cmtkTypedStreamOutput.cxx: In member function 'cmtk::TypedStream::Condition cmtk::TypedStreamOutput::WriteIntArray(const char*, const long long int*, int, int)': +/build/cmtk-3.3.1p1+dfsg/libs/IO/cmtkTypedStreamOutput.cxx:564:25: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'long long int' [-Wformat=] + 564 | fprintf( File, "%ld ", array[i] ); + | ~~^ ~~~~~~~~ + | | | + | long int long long int + | %lld +[ 48%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkVolumeFromSlices.cxx.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkIO.dir/cmtkVolumeFromSlices.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/IO/cmtkVolumeFromSlices.cxx +[ 48%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkVolumeIO.cxx.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkIO.dir/cmtkVolumeIO.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/IO/cmtkVolumeIO.cxx +[ 48%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkXformIO.cxx.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkIO.dir/cmtkXformIO.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/IO/cmtkXformIO.cxx +[ 49%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkXformListIO.cxx.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkIO.dir/cmtkXformListIO.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/IO/cmtkXformListIO.cxx [ 49%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkXformIONifti.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkIO.dir/cmtkXformIONifti.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/IO/cmtkXformIONifti.cxx -[ 49%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkXformIONrrd.cxx.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkIO.dir/cmtkXformIONrrd.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/IO/cmtkXformIONrrd.cxx /build/cmtk-3.3.1p1+dfsg/libs/IO/cmtkVolumeFromFileVanderbilt.cxx: In static member function 'static const SmartPtr cmtk::VolumeFromFile::ReadVanderbilt(const string&)': /build/cmtk-3.3.1p1+dfsg/libs/IO/cmtkVolumeFromFileVanderbilt.cxx:58:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 58 | fgets( line, 96, fp ); | ~~~~~^~~~~~~~~~~~~~~~ +[ 49%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkXformIONrrd.cxx.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkIO.dir/cmtkXformIONrrd.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/IO/cmtkXformIONrrd.cxx [ 49%] Building C object libs/IO/CMakeFiles/cmtkIO.dir/nifti1_io_math.c.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/cmtkIO.dir/nifti1_io_math.c.o -c /build/cmtk-3.3.1p1+dfsg/libs/IO/nifti1_io_math.c [ 49%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkDICOM.cxx.o @@ -2231,23 +2266,23 @@ make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f libs/Registration/CMakeFiles/cmtkRegistration.dir/build.make libs/Registration/CMakeFiles/cmtkRegistration.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +[ 50%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkBestDirectionOptimizer.cxx.o [ 51%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkAffineRegistrationCommandLine.cxx.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkRegistration.dir/cmtkAffineRegistrationCommandLine.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkAffineRegistrationCommandLine.cxx [ 51%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkAffineRegistration.cxx.o +[ 51%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkCongealingFunctional.cxx.o +[ 51%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkElasticRegistrationCommandLine.cxx.o +[ 51%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkBestNeighbourOptimizer.cxx.o +[ 51%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkElasticRegistration.cxx.o +[ 51%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalAffineInitializer.cxx.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkRegistration.dir/cmtkAffineRegistrationCommandLine.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkAffineRegistrationCommandLine.cxx +[ 52%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkEchoPlanarUnwarpFunctional.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkRegistration.dir/cmtkAffineRegistration.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkAffineRegistration.cxx -[ 51%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkBestDirectionOptimizer.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkRegistration.dir/cmtkBestDirectionOptimizer.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkBestDirectionOptimizer.cxx -[ 51%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkBestNeighbourOptimizer.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkRegistration.dir/cmtkBestNeighbourOptimizer.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkBestNeighbourOptimizer.cxx -[ 51%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkCongealingFunctional.cxx.o -[ 52%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkEchoPlanarUnwarpFunctional.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkRegistration.dir/cmtkCongealingFunctional.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkCongealingFunctional.cxx +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkRegistration.dir/cmtkElasticRegistrationCommandLine.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkElasticRegistrationCommandLine.cxx cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkRegistration.dir/cmtkEchoPlanarUnwarpFunctional.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkEchoPlanarUnwarpFunctional.cxx -[ 52%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkElasticRegistration.cxx.o -[ 52%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkElasticRegistrationCommandLine.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkRegistration.dir/cmtkElasticRegistration.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkElasticRegistration.cxx -[ 52%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalAffineInitializer.cxx.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkRegistration.dir/cmtkElasticRegistrationCommandLine.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkElasticRegistrationCommandLine.cxx cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalAffineInitializer.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkGroupwiseRegistrationFunctionalAffineInitializer.cxx [ 52%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalBase.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalBase.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkGroupwiseRegistrationFunctionalBase.cxx @@ -2255,14 +2290,12 @@ cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalXformTemplate.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkGroupwiseRegistrationFunctionalXformTemplate.cxx [ 53%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalXformTemplate_Affine_IO.cxx.o [ 53%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalXformTemplate_SplineWarp.cxx.o -[ 53%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalXformTemplate_SplineWarp_IO.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalXformTemplate_Affine_IO.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkGroupwiseRegistrationFunctionalXformTemplate_Affine_IO.cxx cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalXformTemplate_SplineWarp.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkGroupwiseRegistrationFunctionalXformTemplate_SplineWarp.cxx +[ 53%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalXformTemplate_SplineWarp_IO.cxx.o [ 53%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalXformTemplateBase.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalXformTemplate_SplineWarp_IO.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkGroupwiseRegistrationFunctionalXformTemplate_SplineWarp_IO.cxx -[ 54%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationOutput.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalXformTemplateBase.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkGroupwiseRegistrationFunctionalXformTemplateBase.cxx -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationOutput.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkGroupwiseRegistrationOutput.cxx In file included from /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkVoxelRegistration.h:52, from /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkElasticRegistration.h:38, from /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkElasticRegistration.cxx:33: @@ -2271,13 +2304,6 @@ | ^~~~~ In file included from /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkVoxelRegistration.h:52, from /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkAffineRegistration.h:38, - from /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkAffineRegistrationCommandLine.h:38, - from /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkAffineRegistrationCommandLine.cxx:33: -/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); - | ^~~~~ -In file included from /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkVoxelRegistration.h:52, - from /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkAffineRegistration.h:38, from /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkAffineRegistration.cxx:33: /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); @@ -2289,29 +2315,47 @@ /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); | ^~~~~ +[ 54%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationOutput.cxx.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationOutput.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkGroupwiseRegistrationOutput.cxx [ 54%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationRMIFunctional.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationRMIFunctional.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkGroupwiseRegistrationRMIFunctional.cxx [ 54%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkHausdorffDistance.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkRegistration.dir/cmtkHausdorffDistance.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkHausdorffDistance.cxx +In file included from /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkVoxelRegistration.h:52, + from /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkAffineRegistration.h:38, + from /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkAffineRegistrationCommandLine.h:38, + from /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkAffineRegistrationCommandLine.cxx:33: +/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); + | ^~~~~ [ 54%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkImagePairRegistration.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkRegistration.dir/cmtkImagePairRegistration.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkImagePairRegistration.cxx [ 54%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkImagePairRegistrationFunctional.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkRegistration.dir/cmtkImagePairRegistrationFunctional.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkImagePairRegistrationFunctional.cxx -[ 55%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkImagePairRegistrationImagePreprocessor.cxx.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkRegistration.dir/cmtkImagePairRegistrationImagePreprocessor.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkImagePairRegistrationImagePreprocessor.cxx -[ 55%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkImagePairAffineRegistration.cxx.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkRegistration.dir/cmtkImagePairAffineRegistration.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkImagePairAffineRegistration.cxx In file included from /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkImagePairRegistration.h:39, from /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkImagePairRegistration.cxx:33: /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); | ^~~~~ +[ 55%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkImagePairRegistrationImagePreprocessor.cxx.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkRegistration.dir/cmtkImagePairRegistrationImagePreprocessor.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkImagePairRegistrationImagePreprocessor.cxx +[ 55%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkImagePairAffineRegistration.cxx.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkRegistration.dir/cmtkImagePairAffineRegistration.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkImagePairAffineRegistration.cxx [ 55%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkImagePairAffineRegistrationCommandLine.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkRegistration.dir/cmtkImagePairAffineRegistrationCommandLine.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkImagePairAffineRegistrationCommandLine.cxx [ 55%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkImagePairAffineRegistrationFunctional.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkRegistration.dir/cmtkImagePairAffineRegistrationFunctional.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkImagePairAffineRegistrationFunctional.cxx [ 55%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkImagePairNonrigidRegistration.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkRegistration.dir/cmtkImagePairNonrigidRegistration.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkImagePairNonrigidRegistration.cxx +[ 56%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkImagePairNonrigidRegistrationCommandLine.cxx.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkRegistration.dir/cmtkImagePairNonrigidRegistrationCommandLine.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkImagePairNonrigidRegistrationCommandLine.cxx +In file included from /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkImagePairRegistration.h:39, + from /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkImagePairAffineRegistration.h:41, + from /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkImagePairAffineRegistrationCommandLine.h:38, + from /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkImagePairAffineRegistrationCommandLine.cxx:33: +/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); + | ^~~~~ In file included from /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkImagePairRegistration.h:39, from /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkImagePairRegistrationImagePreprocessor.cxx:33: /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] @@ -2323,35 +2367,22 @@ /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); | ^~~~~ -[ 56%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkImagePairNonrigidRegistrationCommandLine.cxx.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkRegistration.dir/cmtkImagePairNonrigidRegistrationCommandLine.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkImagePairNonrigidRegistrationCommandLine.cxx [ 56%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkImagePairNonrigidRegistrationFunctional.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkRegistration.dir/cmtkImagePairNonrigidRegistrationFunctional.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkImagePairNonrigidRegistrationFunctional.cxx [ 56%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkImagePairSimilarityJointHistogram.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkRegistration.dir/cmtkImagePairSimilarityJointHistogram.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkImagePairSimilarityJointHistogram.cxx +[ 56%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkImagePairSimilarityMeasure.cxx.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkRegistration.dir/cmtkImagePairSimilarityMeasure.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkImagePairSimilarityMeasure.cxx +[ 56%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkImagePairSimilarityMeasureCR.cxx.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkRegistration.dir/cmtkImagePairSimilarityMeasureCR.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkImagePairSimilarityMeasureCR.cxx In file included from /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkImagePairRegistration.h:39, from /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkImagePairNonrigidRegistration.h:40, from /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkImagePairNonrigidRegistration.cxx:33: /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); | ^~~~~ -In file included from /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkImagePairRegistration.h:39, - from /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkImagePairAffineRegistration.h:41, - from /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkImagePairAffineRegistrationCommandLine.h:38, - from /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkImagePairAffineRegistrationCommandLine.cxx:33: -/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); - | ^~~~~ -[ 56%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkImagePairSimilarityMeasure.cxx.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkRegistration.dir/cmtkImagePairSimilarityMeasure.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkImagePairSimilarityMeasure.cxx -[ 56%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkImagePairSimilarityMeasureCR.cxx.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkRegistration.dir/cmtkImagePairSimilarityMeasureCR.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkImagePairSimilarityMeasureCR.cxx [ 57%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkImagePairSimilarityMeasureMSD.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkRegistration.dir/cmtkImagePairSimilarityMeasureMSD.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkImagePairSimilarityMeasureMSD.cxx -[ 57%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkImagePairSimilarityMeasureNCC.cxx.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkRegistration.dir/cmtkImagePairSimilarityMeasureNCC.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkImagePairSimilarityMeasureNCC.cxx -[ 57%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkImagePairSimilarityMeasureRMS.cxx.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkRegistration.dir/cmtkImagePairSimilarityMeasureRMS.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkImagePairSimilarityMeasureRMS.cxx In file included from /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkImagePairRegistration.h:39, from /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkImagePairNonrigidRegistration.h:40, from /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkImagePairNonrigidRegistrationCommandLine.h:38, @@ -2359,6 +2390,10 @@ /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); | ^~~~~ +[ 57%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkImagePairSimilarityMeasureRMS.cxx.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkRegistration.dir/cmtkImagePairSimilarityMeasureRMS.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkImagePairSimilarityMeasureRMS.cxx +[ 57%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkImagePairSimilarityMeasureNCC.cxx.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkRegistration.dir/cmtkImagePairSimilarityMeasureNCC.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkImagePairSimilarityMeasureNCC.cxx [ 57%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkImagePairSymmetricAffineRegistrationFunctional.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkRegistration.dir/cmtkImagePairSymmetricAffineRegistrationFunctional.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkImagePairSymmetricAffineRegistrationFunctional.cxx [ 57%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkImagePairSymmetricNonrigidRegistrationFunctional.cxx.o @@ -2371,17 +2406,17 @@ cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkRegistration.dir/cmtkImageSymmetryPlaneFunctionalBase.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkImageSymmetryPlaneFunctionalBase.cxx [ 58%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkMakeInitialAffineTransformation.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkRegistration.dir/cmtkMakeInitialAffineTransformation.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkMakeInitialAffineTransformation.cxx +In file included from /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkImageSymmetryPlaneCommandLineBase.h:43, + from /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkImageSymmetryPlaneCommandLineBase.cxx:33: +/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); + | ^~~~~ [ 58%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkMultiChannelRegistrationFunctionalBase.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkRegistration.dir/cmtkMultiChannelRegistrationFunctionalBase.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkMultiChannelRegistrationFunctionalBase.cxx [ 59%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkProtocolCallback.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkRegistration.dir/cmtkProtocolCallback.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkProtocolCallback.cxx [ 59%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkReformatVolume.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkRegistration.dir/cmtkReformatVolume.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkReformatVolume.cxx -In file included from /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkImageSymmetryPlaneCommandLineBase.h:43, - from /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkImageSymmetryPlaneCommandLineBase.cxx:33: -/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); - | ^~~~~ [ 59%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkRegistrationCallback.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkRegistration.dir/cmtkRegistrationCallback.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkRegistrationCallback.cxx [ 59%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkRegistrationJointHistogram.cxx.o @@ -2462,44 +2497,33 @@ make -f libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/build.make libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' [ 63%] Building CXX object libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkAtlasSegmentation.cxx.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Segmentation && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSegmentation_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkSegmentation.dir/cmtkAtlasSegmentation.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Segmentation/cmtkAtlasSegmentation.cxx [ 63%] Building CXX object libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkEntropyMinimizationIntensityCorrectionFunctionalBase.cxx.o -[ 64%] Building CXX object libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkEntropyMinimizationIntensityCorrectionFunctional.cxx.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Segmentation && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSegmentation_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkSegmentation.dir/cmtkAtlasSegmentation.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Segmentation/cmtkAtlasSegmentation.cxx cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Segmentation && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSegmentation_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkSegmentation.dir/cmtkEntropyMinimizationIntensityCorrectionFunctionalBase.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Segmentation/cmtkEntropyMinimizationIntensityCorrectionFunctionalBase.cxx +[ 64%] Building CXX object libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkEntropyMinimizationIntensityCorrectionFunctional.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Segmentation && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSegmentation_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkSegmentation.dir/cmtkEntropyMinimizationIntensityCorrectionFunctional.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Segmentation/cmtkEntropyMinimizationIntensityCorrectionFunctional.cxx [ 64%] Building CXX object libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationLocalBinaryShapeBasedAveraging.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Segmentation && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSegmentation_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationLocalBinaryShapeBasedAveraging.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Segmentation/cmtkLabelCombinationLocalBinaryShapeBasedAveraging.cxx [ 64%] Building CXX object libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationLocalShapeBasedAveraging.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Segmentation && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSegmentation_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationLocalShapeBasedAveraging.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Segmentation/cmtkLabelCombinationLocalShapeBasedAveraging.cxx [ 64%] Building CXX object libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationLocalVoting.cxx.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Segmentation && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSegmentation_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationLocalVoting.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Segmentation/cmtkLabelCombinationLocalVoting.cxx +[ 64%] Building CXX object libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationLocalWeighting.cxx.o [ 65%] Building CXX object libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationMultiClassSTAPLE.cxx.o -[ 65%] Building CXX object libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationLocalWeighting.cxx.o -[ 65%] Building CXX object libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationSTAPLE.cxx.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Segmentation && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSegmentation_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationLocalVoting.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Segmentation/cmtkLabelCombinationLocalVoting.cxx cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Segmentation && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSegmentation_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationLocalWeighting.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Segmentation/cmtkLabelCombinationLocalWeighting.cxx cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Segmentation && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSegmentation_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationMultiClassSTAPLE.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Segmentation/cmtkLabelCombinationMultiClassSTAPLE.cxx +[ 65%] Building CXX object libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationSTAPLE.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Segmentation && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSegmentation_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationSTAPLE.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Segmentation/cmtkLabelCombinationSTAPLE.cxx -[ 65%] Building CXX object libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationShapeBasedAveraging.cxx.o [ 65%] Building CXX object libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationVoting.cxx.o -[ 65%] Building CXX object libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationShapeBasedAveragingInterpolation.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Segmentation && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSegmentation_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationVoting.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Segmentation/cmtkLabelCombinationVoting.cxx +[ 65%] Building CXX object libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationShapeBasedAveraging.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Segmentation && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSegmentation_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationShapeBasedAveraging.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Segmentation/cmtkLabelCombinationShapeBasedAveraging.cxx +[ 65%] Building CXX object libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationShapeBasedAveragingInterpolation.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Segmentation && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSegmentation_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationShapeBasedAveragingInterpolation.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Segmentation/cmtkLabelCombinationShapeBasedAveragingInterpolation.cxx [ 66%] Building CXX object libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkLeastSquaresPolynomialIntensityBiasField.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Segmentation && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSegmentation_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkSegmentation.dir/cmtkLeastSquaresPolynomialIntensityBiasField.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Segmentation/cmtkLeastSquaresPolynomialIntensityBiasField.cxx [ 66%] Building CXX object libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkOverlapMeasures.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Segmentation && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSegmentation_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkSegmentation.dir/cmtkOverlapMeasures.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Segmentation/cmtkOverlapMeasures.cxx -[ 66%] Building CXX object libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkSimpleLevelset.cxx.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Segmentation && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSegmentation_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkSegmentation.dir/cmtkSimpleLevelset.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Segmentation/cmtkSimpleLevelset.cxx -In file included from /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkVoxelRegistration.h:52, - from /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkAffineRegistration.h:38, - from /build/cmtk-3.3.1p1+dfsg/libs/Recon/cmtkVolumeInjectionReconstruction.h:40, - from /build/cmtk-3.3.1p1+dfsg/libs/Recon/cmtkInverseInterpolationVolumeReconstructionBase.h:40, - from /build/cmtk-3.3.1p1+dfsg/libs/Recon/cmtkInverseInterpolationVolumeReconstructionBase.cxx:37: -/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); - | ^~~~~ -[ 66%] Building CXX object libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkSimpleLevelsetCommandLineBase.cxx.o In file included from /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkVoxelRegistration.h:52, from /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkAffineRegistration.h:38, from /build/cmtk-3.3.1p1+dfsg/libs/Recon/cmtkVolumeInjectionReconstruction.h:40, @@ -2507,24 +2531,35 @@ /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); | ^~~~~ -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Segmentation && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSegmentation_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkSegmentation.dir/cmtkSimpleLevelsetCommandLineBase.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Segmentation/cmtkSimpleLevelsetCommandLineBase.cxx In file included from /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkVoxelRegistration.h:52, from /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkAffineRegistration.h:38, from /build/cmtk-3.3.1p1+dfsg/libs/Segmentation/cmtkAtlasSegmentation.cxx:36: /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); | ^~~~~ -In file included from /build/cmtk-3.3.1p1+dfsg/libs/Segmentation/cmtkSimpleLevelsetCommandLineBase.h:40, - from /build/cmtk-3.3.1p1+dfsg/libs/Segmentation/cmtkSimpleLevelsetCommandLineBase.cxx:33: +[ 66%] Building CXX object libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkSimpleLevelset.cxx.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Segmentation && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSegmentation_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkSegmentation.dir/cmtkSimpleLevelset.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Segmentation/cmtkSimpleLevelset.cxx +In file included from /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkVoxelRegistration.h:52, + from /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkAffineRegistration.h:38, + from /build/cmtk-3.3.1p1+dfsg/libs/Recon/cmtkVolumeInjectionReconstruction.h:40, + from /build/cmtk-3.3.1p1+dfsg/libs/Recon/cmtkInverseInterpolationVolumeReconstructionBase.h:40, + from /build/cmtk-3.3.1p1+dfsg/libs/Recon/cmtkInverseInterpolationVolumeReconstructionBase.cxx:37: /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); | ^~~~~ +[ 66%] Building CXX object libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkSimpleLevelsetCommandLineBase.cxx.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Segmentation && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSegmentation_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkSegmentation.dir/cmtkSimpleLevelsetCommandLineBase.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Segmentation/cmtkSimpleLevelsetCommandLineBase.cxx [ 66%] Building CXX object libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkDetectPhantomMagphanEMR051.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Segmentation && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSegmentation_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkSegmentation.dir/cmtkDetectPhantomMagphanEMR051.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Segmentation/cmtkDetectPhantomMagphanEMR051.cxx [ 67%] Building CXX object libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkSphereDetectionBipolarMatchedFilterFFT.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Segmentation && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSegmentation_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkSegmentation.dir/cmtkSphereDetectionBipolarMatchedFilterFFT.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Segmentation/cmtkSphereDetectionBipolarMatchedFilterFFT.cxx [ 67%] Building CXX object libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkSphereDetectionNormalizedBipolarMatchedFilterFFT.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Segmentation && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSegmentation_EXPORTS -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -o CMakeFiles/cmtkSegmentation.dir/cmtkSphereDetectionNormalizedBipolarMatchedFilterFFT.cxx.o -c /build/cmtk-3.3.1p1+dfsg/libs/Segmentation/cmtkSphereDetectionNormalizedBipolarMatchedFilterFFT.cxx +In file included from /build/cmtk-3.3.1p1+dfsg/libs/Segmentation/cmtkSimpleLevelsetCommandLineBase.h:40, + from /build/cmtk-3.3.1p1+dfsg/libs/Segmentation/cmtkSimpleLevelsetCommandLineBase.cxx:33: +/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); + | ^~~~~ [ 67%] Linking CXX shared library ../../bin/libcmtkRecon.so cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Recon && /usr/bin/cmake -E cmake_link_script CMakeFiles/cmtkRecon.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -shared -Wl,-soname,libcmtkRecon.so -o ../../bin/libcmtkRecon.so CMakeFiles/cmtkRecon.dir/cmtkInverseInterpolationVolumeReconstructionBase.cxx.o CMakeFiles/cmtkRecon.dir/cmtkVolumeInjectionReconstruction.cxx.o -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../../bin/libcmtkRegistration.so ../../bin/libcmtkIO.so ../../bin/libcmtkBase.so ../../bin/libcmtkSystem.so -lbz2 ../../bin/libcmtkMxml.so -lfftw3_omp -lfftw3 -lfftw3_threads ../../bin/libcmtkNumerics.so ../../bin/libNrrdIO.so -lz -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd @@ -2542,184 +2577,169 @@ make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/detect_spheres_matched_filter.dir/DependInfo.cmake --color= make -f apps/CMakeFiles/dcm2image.dir/build.make apps/CMakeFiles/dcm2image.dir/depend +make -f apps/CMakeFiles/mcwarp.dir/build.make apps/CMakeFiles/mcwarp.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/dcm2image.dir/DependInfo.cmake --color= -make -f apps/CMakeFiles/mcwarp.dir/build.make apps/CMakeFiles/mcwarp.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/mcwarp.dir/DependInfo.cmake --color= make -f apps/CMakeFiles/asegment_sri24.dir/build.make apps/CMakeFiles/asegment_sri24.dir/depend -Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/detect_adni_phantom.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/detect_adni_phantom.dir/depend.internal". -Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/detect_adni_phantom.dir/depend.internal". make -f apps/CMakeFiles/xform2scalar.dir/build.make apps/CMakeFiles/xform2scalar.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/asegment_sri24.dir/DependInfo.cmake --color= +Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/detect_adni_phantom.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/detect_adni_phantom.dir/depend.internal". +Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/detect_adni_phantom.dir/depend.internal". make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu 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Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/detect_spheres_matched_filter.dir/depend.internal". -make -f apps/CMakeFiles/xform2itk.dir/build.make apps/CMakeFiles/xform2itk.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/xform2itk.dir/DependInfo.cmake --color= -Scanning dependencies of target detect_adni_phantom make -f apps/CMakeFiles/xform2dfield.dir/build.make apps/CMakeFiles/xform2dfield.dir/depend Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/dcm2image.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/dcm2image.dir/depend.internal". Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/dcm2image.dir/depend.internal". Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/mcwarp.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/mcwarp.dir/depend.internal". Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/mcwarp.dir/depend.internal". -make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/xform2dfield.dir/DependInfo.cmake --color= -make -f apps/CMakeFiles/detect_adni_phantom.dir/build.make apps/CMakeFiles/detect_adni_phantom.dir/build -Scanning dependencies of target detect_spheres_matched_filter +make -f apps/CMakeFiles/warp2ps.dir/build.make apps/CMakeFiles/warp2ps.dir/depend +Scanning dependencies of target detect_adni_phantom make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make -f apps/CMakeFiles/detect_spheres_matched_filter.dir/build.make apps/CMakeFiles/detect_spheres_matched_filter.dir/build -Scanning dependencies of target dcm2image -Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/xform2scalar.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/xform2scalar.dir/depend.internal". -Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/xform2scalar.dir/depend.internal". Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/asegment_sri24.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/asegment_sri24.dir/depend.internal". Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/asegment_sri24.dir/depend.internal". make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make -f apps/CMakeFiles/warp2ps.dir/build.make apps/CMakeFiles/warp2ps.dir/depend +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/warp2ps.dir/DependInfo.cmake --color= +Scanning dependencies of target detect_spheres_matched_filter +make -f apps/CMakeFiles/detect_adni_phantom.dir/build.make apps/CMakeFiles/detect_adni_phantom.dir/build make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/xform2scalar.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/xform2scalar.dir/depend.internal". +Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/xform2scalar.dir/depend.internal". +Scanning dependencies of target dcm2image +make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +make -f apps/CMakeFiles/detect_spheres_matched_filter.dir/build.make apps/CMakeFiles/detect_spheres_matched_filter.dir/build Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/xform2itk.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/xform2itk.dir/depend.internal". Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/xform2itk.dir/depend.internal". -make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/warp2ps.dir/DependInfo.cmake --color= +make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/dcm2image.dir/build.make apps/CMakeFiles/dcm2image.dir/build -Scanning dependencies of target mcwarp make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make -f apps/CMakeFiles/warp.dir/build.make apps/CMakeFiles/warp.dir/depend -make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/xform2dfield.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/xform2dfield.dir/depend.internal". Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/xform2dfield.dir/depend.internal". -Scanning dependencies of target xform2scalar +Scanning dependencies of target mcwarp +Scanning dependencies of target asegment_sri24 +Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/warp2ps.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/warp2ps.dir/depend.internal". +Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/warp2ps.dir/depend.internal". +make -f apps/CMakeFiles/warp.dir/build.make apps/CMakeFiles/warp.dir/depend +make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' Scanning dependencies of target xform2itk -[ 68%] Building CXX object apps/CMakeFiles/detect_spheres_matched_filter.dir/detect_spheres_matched_filter.cxx.o +Scanning dependencies of target xform2scalar make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/warp.dir/DependInfo.cmake --color= make -f apps/CMakeFiles/mcwarp.dir/build.make apps/CMakeFiles/mcwarp.dir/build -[ 68%] Building CXX object apps/CMakeFiles/detect_adni_phantom.dir/detect_adni_phantom.cxx.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/detect_spheres_matched_filter.dir/detect_spheres_matched_filter.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/detect_spheres_matched_filter.cxx make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -Scanning dependencies of target asegment_sri24 -make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/detect_adni_phantom.dir/detect_adni_phantom.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/detect_adni_phantom.cxx -Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/warp2ps.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/warp2ps.dir/depend.internal". -Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/warp2ps.dir/depend.internal". make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +[ 67%] Building CXX object apps/CMakeFiles/detect_adni_phantom.dir/detect_adni_phantom.cxx.o make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/detect_adni_phantom.dir/detect_adni_phantom.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/detect_adni_phantom.cxx make -f apps/CMakeFiles/asegment_sri24.dir/build.make apps/CMakeFiles/asegment_sri24.dir/build -Scanning dependencies of target xform2dfield +[ 68%] Building CXX object apps/CMakeFiles/detect_spheres_matched_filter.dir/detect_spheres_matched_filter.cxx.o make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +Scanning dependencies of target warp2ps make -f apps/CMakeFiles/xform2scalar.dir/build.make apps/CMakeFiles/xform2scalar.dir/build +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/detect_spheres_matched_filter.dir/detect_spheres_matched_filter.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/detect_spheres_matched_filter.cxx +Scanning dependencies of target xform2dfield make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' [ 68%] Building CXX object apps/CMakeFiles/dcm2image.dir/dcm2image.cxx.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/dcm2image.dir/dcm2image.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/dcm2image.cxx -Scanning dependencies of target warp2ps +make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/xform2itk.dir/build.make apps/CMakeFiles/xform2itk.dir/build -Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/warp.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/warp.dir/depend.internal". -Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/warp.dir/depend.internal". +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/dcm2image.dir/dcm2image.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/dcm2image.cxx make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/xform2dfield.dir/build.make apps/CMakeFiles/xform2dfield.dir/build -make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/warp.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/warp.dir/depend.internal". +Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/warp.dir/depend.internal". make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/warp2ps.dir/build.make apps/CMakeFiles/warp2ps.dir/build [ 68%] Building CXX object apps/CMakeFiles/mcwarp.dir/mcwarp.cxx.o -Scanning dependencies of target warp -[ 68%] Building CXX object apps/CMakeFiles/asegment_sri24.dir/asegment_sri24.cxx.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/mcwarp.dir/mcwarp.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/mcwarp.cxx make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/vtkxform.dir/build.make apps/CMakeFiles/vtkxform.dir/depend -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/mcwarp.dir/mcwarp.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/mcwarp.cxx -make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 68%] Building CXX object apps/CMakeFiles/xform2scalar.dir/xform2scalar.cxx.o +[ 68%] Building CXX object apps/CMakeFiles/asegment_sri24.dir/asegment_sri24.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/asegment_sri24.dir/asegment_sri24.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/asegment_sri24.cxx -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/xform2scalar.dir/xform2scalar.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/xform2scalar.cxx +[ 68%] Building CXX object apps/CMakeFiles/xform2scalar.dir/xform2scalar.cxx.o make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/vtkxform.dir/DependInfo.cmake --color= -make -f apps/CMakeFiles/warp.dir/build.make apps/CMakeFiles/warp.dir/build -[ 69%] Building CXX object apps/CMakeFiles/xform2dfield.dir/xform2dfield.cxx.o -make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/volume_reconstruction.dir/build.make apps/CMakeFiles/volume_reconstruction.dir/depend +[ 68%] Building CXX object apps/CMakeFiles/xform2itk.dir/xform2itk.cxx.o +Scanning dependencies of target warp +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/xform2scalar.dir/xform2scalar.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/xform2scalar.cxx +make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/volume_reconstruction.dir/DependInfo.cmake --color= -make -f apps/CMakeFiles/unwarp_image_phantom.dir/build.make apps/CMakeFiles/unwarp_image_phantom.dir/depend -[ 69%] Building CXX object apps/CMakeFiles/xform2itk.dir/xform2itk.cxx.o +make -f apps/CMakeFiles/warp.dir/build.make apps/CMakeFiles/warp.dir/build +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/xform2itk.dir/xform2itk.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/xform2itk.cxx +[ 69%] Building CXX object apps/CMakeFiles/xform2dfield.dir/xform2dfield.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/xform2dfield.dir/xform2dfield.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/xform2dfield.cxx +make -f apps/CMakeFiles/unwarp_image_phantom.dir/build.make apps/CMakeFiles/unwarp_image_phantom.dir/depend +make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' [ 69%] Building CXX object apps/CMakeFiles/warp2ps.dir/warp2ps.cxx.o make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/unwarp_image_phantom.dir/DependInfo.cmake --color= make -f apps/CMakeFiles/unsplit.dir/build.make apps/CMakeFiles/unsplit.dir/depend cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/warp2ps.dir/warp2ps.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/warp2ps.cxx -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/xform2itk.dir/xform2itk.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/xform2itk.cxx -make -f apps/CMakeFiles/ttest.dir/build.make apps/CMakeFiles/ttest.dir/depend -make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/unsplit.dir/DependInfo.cmake --color= Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/vtkxform.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/vtkxform.dir/depend.internal". Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/vtkxform.dir/depend.internal". make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make -f apps/CMakeFiles/symplx.dir/build.make apps/CMakeFiles/symplx.dir/depend +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/unsplit.dir/DependInfo.cmake --color= +make -f apps/CMakeFiles/ttest.dir/build.make apps/CMakeFiles/ttest.dir/depend +make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/ttest.dir/DependInfo.cmake --color= +Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/volume_reconstruction.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/volume_reconstruction.dir/depend.internal". +Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/volume_reconstruction.dir/depend.internal". [ 69%] Building CXX object apps/CMakeFiles/warp.dir/warp.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/warp.dir/warp.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/warp.cxx -make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/symplx.dir/DependInfo.cmake --color= Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/unwarp_image_phantom.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/unwarp_image_phantom.dir/depend.internal". Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/unwarp_image_phantom.dir/depend.internal". Scanning dependencies of target vtkxform -Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/volume_reconstruction.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/volume_reconstruction.dir/depend.internal". -Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/volume_reconstruction.dir/depend.internal". make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/vtkxform.dir/build.make apps/CMakeFiles/vtkxform.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -Scanning dependencies of target unwarp_image_phantom -make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make -f apps/CMakeFiles/unwarp_image_phantom.dir/build.make apps/CMakeFiles/unwarp_image_phantom.dir/build -Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/unsplit.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/unsplit.dir/depend.internal". -Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/unsplit.dir/depend.internal". Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/ttest.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/ttest.dir/depend.internal". Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/ttest.dir/depend.internal". -Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/symplx.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/symplx.dir/depend.internal". -Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/symplx.dir/depend.internal". -make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' Scanning dependencies of target volume_reconstruction -Scanning dependencies of target ttest make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/volume_reconstruction.dir/build.make apps/CMakeFiles/volume_reconstruction.dir/build -Scanning dependencies of target symplx +Scanning dependencies of target unwarp_image_phantom +Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/unsplit.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/unsplit.dir/depend.internal". +Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/unsplit.dir/depend.internal". +make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +make -f apps/CMakeFiles/unwarp_image_phantom.dir/build.make apps/CMakeFiles/unwarp_image_phantom.dir/build +make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' [ 69%] Building CXX object apps/CMakeFiles/vtkxform.dir/vtkxform.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/vtkxform.dir/vtkxform.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/vtkxform.cxx -make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +Scanning dependencies of target ttest Scanning dependencies of target unsplit -make -f apps/CMakeFiles/ttest.dir/build.make apps/CMakeFiles/ttest.dir/build -make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make -f apps/CMakeFiles/symplx.dir/build.make apps/CMakeFiles/symplx.dir/build make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +make -f apps/CMakeFiles/ttest.dir/build.make apps/CMakeFiles/ttest.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/unsplit.dir/build.make apps/CMakeFiles/unsplit.dir/build -[ 69%] Building CXX object apps/CMakeFiles/unwarp_image_phantom.dir/unwarp_image_phantom.cxx.o +[ 70%] Building CXX object apps/CMakeFiles/volume_reconstruction.dir/volume_reconstruction.cxx.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/volume_reconstruction.dir/volume_reconstruction.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/volume_reconstruction.cxx +[ 70%] Building CXX object apps/CMakeFiles/unwarp_image_phantom.dir/unwarp_image_phantom.cxx.o make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/unwarp_image_phantom.dir/unwarp_image_phantom.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/unwarp_image_phantom.cxx -[ 70%] Building CXX object apps/CMakeFiles/ttest.dir/ttest.cxx.o +[ 71%] Building CXX object apps/CMakeFiles/ttest.dir/ttest.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/ttest.dir/ttest.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/ttest.cxx -[ 71%] Building CXX object apps/CMakeFiles/volume_reconstruction.dir/volume_reconstruction.cxx.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/volume_reconstruction.dir/volume_reconstruction.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/volume_reconstruction.cxx -[ 71%] Building CXX object apps/CMakeFiles/symplx.dir/symplx.cxx.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/symplx.dir/symplx.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/symplx.cxx [ 71%] Building CXX object apps/CMakeFiles/unsplit.dir/unsplit.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/unsplit.dir/unsplit.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/unsplit.cxx In file included from /build/cmtk-3.3.1p1+dfsg/apps/detect_spheres_matched_filter.cxx:35: /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); | ^~~~~ -In file included from /build/cmtk-3.3.1p1+dfsg/apps/detect_adni_phantom.cxx:36: -/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); - | ^~~~~ -In file included from /build/cmtk-3.3.1p1+dfsg/apps/warp2ps.cxx:37: +In file included from /build/cmtk-3.3.1p1+dfsg/apps/vtkxform.cxx:35: /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); | ^~~~~ @@ -2727,39 +2747,39 @@ /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); | ^~~~~ -In file included from /build/cmtk-3.3.1p1+dfsg/apps/dcm2image.cxx:39: +In file included from /build/cmtk-3.3.1p1+dfsg/apps/asegment_sri24.cxx:35: /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); | ^~~~~ -In file included from /build/cmtk-3.3.1p1+dfsg/apps/vtkxform.cxx:35: +In file included from /build/cmtk-3.3.1p1+dfsg/apps/detect_adni_phantom.cxx:36: /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); | ^~~~~ -In file included from /build/cmtk-3.3.1p1+dfsg/apps/unsplit.cxx:35: +In file included from /build/cmtk-3.3.1p1+dfsg/apps/warp2ps.cxx:37: /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); | ^~~~~ -In file included from /build/cmtk-3.3.1p1+dfsg/apps/volume_reconstruction.cxx:35: +In file included from /build/cmtk-3.3.1p1+dfsg/apps/xform2dfield.cxx:38: /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); | ^~~~~ -In file included from /build/cmtk-3.3.1p1+dfsg/apps/asegment_sri24.cxx:35: +In file included from /build/cmtk-3.3.1p1+dfsg/apps/unsplit.cxx:35: /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); | ^~~~~ -In file included from /build/cmtk-3.3.1p1+dfsg/apps/xform2dfield.cxx:38: +In file included from /build/cmtk-3.3.1p1+dfsg/apps/xform2itk.cxx:36: /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); | ^~~~~ -In file included from /build/cmtk-3.3.1p1+dfsg/apps/xform2scalar.cxx:36: +In file included from /build/cmtk-3.3.1p1+dfsg/apps/ttest.cxx:37: /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); | ^~~~~ -In file included from /build/cmtk-3.3.1p1+dfsg/apps/xform2itk.cxx:36: +In file included from /build/cmtk-3.3.1p1+dfsg/apps/volume_reconstruction.cxx:35: /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); | ^~~~~ -In file included from /build/cmtk-3.3.1p1+dfsg/apps/ttest.cxx:37: +In file included from /build/cmtk-3.3.1p1+dfsg/apps/xform2scalar.cxx:36: /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); | ^~~~~ @@ -2767,11 +2787,16 @@ /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); | ^~~~~ -In file included from /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkImageSymmetryPlaneCommandLineBase.h:43, - from /build/cmtk-3.3.1p1+dfsg/apps/symplx.cxx:35: +In file included from /build/cmtk-3.3.1p1+dfsg/apps/dcm2image.cxx:39: /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); | ^~~~~ +/build/cmtk-3.3.1p1+dfsg/apps/vtkxform.cxx: In function 'int doMain(int, const char**)': +/build/cmtk-3.3.1p1+dfsg/apps/vtkxform.cxx:190:47: warning: narrowing conversion of 'xyz.cmtk::FixedVector<3, double>::.cmtk::FixedArray<3, double>::operator[](0)' from 'double' to 'float' [-Wnarrowing] + 190 | float xyzFloat[3] = { xyz[0], xyz[1], xyz[2] }; + | ^ +/build/cmtk-3.3.1p1+dfsg/apps/vtkxform.cxx:190:47: warning: narrowing conversion of 'xyz.cmtk::FixedVector<3, double>::.cmtk::FixedArray<3, double>::operator[](1)' from 'double' to 'float' [-Wnarrowing] +/build/cmtk-3.3.1p1+dfsg/apps/vtkxform.cxx:190:47: warning: narrowing conversion of 'xyz.cmtk::FixedVector<3, double>::.cmtk::FixedArray<3, double>::operator[](2)' from 'double' to 'float' [-Wnarrowing] In file included from /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkVoxelRegistration.h:52, from /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkElasticRegistration.h:38, from /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkElasticRegistrationCommandLine.h:38, @@ -2840,189 +2865,220 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -/build/cmtk-3.3.1p1+dfsg/apps/vtkxform.cxx: In function 'int doMain(int, const char**)': -/build/cmtk-3.3.1p1+dfsg/apps/vtkxform.cxx:190:47: warning: narrowing conversion of 'xyz.cmtk::FixedVector<3, double>::.cmtk::FixedArray<3, double>::operator[](0)' from 'double' to 'float' [-Wnarrowing] - 190 | float xyzFloat[3] = { xyz[0], xyz[1], xyz[2] }; - | ^ -/build/cmtk-3.3.1p1+dfsg/apps/vtkxform.cxx:190:47: warning: narrowing conversion of 'xyz.cmtk::FixedVector<3, double>::.cmtk::FixedArray<3, double>::operator[](1)' from 'double' to 'float' [-Wnarrowing] -/build/cmtk-3.3.1p1+dfsg/apps/vtkxform.cxx:190:47: warning: narrowing conversion of 'xyz.cmtk::FixedVector<3, double>::.cmtk::FixedArray<3, double>::operator[](2)' from 'double' to 'float' [-Wnarrowing] -[ 71%] Linking CXX executable ../bin/symplx -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/symplx.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/symplx.dir/symplx.cxx.o -o ../bin/symplx -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' [ 72%] Linking CXX executable ../bin/warp cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/warp.dir/link.txt --verbose=1 -[ 72%] Built target symplx +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/warp.dir/warp.cxx.o -o ../bin/warp -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +[ 72%] Built target warp +make -f apps/CMakeFiles/symplx.dir/build.make apps/CMakeFiles/symplx.dir/depend +make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/symplx.dir/DependInfo.cmake --color= +Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/symplx.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/symplx.dir/depend.internal". +Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/symplx.dir/depend.internal". +Scanning dependencies of target symplx +make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +make -f apps/CMakeFiles/symplx.dir/build.make apps/CMakeFiles/symplx.dir/build +make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +[ 72%] Building CXX object apps/CMakeFiles/symplx.dir/symplx.cxx.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/symplx.dir/symplx.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/symplx.cxx +In file included from /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkImageSymmetryPlaneCommandLineBase.h:43, + from /build/cmtk-3.3.1p1+dfsg/apps/symplx.cxx:35: +/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); + | ^~~~~ +[ 72%] Linking CXX executable ../bin/unsplit +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/unsplit.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/unsplit.dir/unsplit.cxx.o -o ../bin/unsplit -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +[ 72%] Linking CXX executable ../bin/vtkxform +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/vtkxform.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/vtkxform.dir/vtkxform.cxx.o -o ../bin/vtkxform -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +[ 72%] Linking CXX executable ../bin/asegment_sri24 +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/asegment_sri24.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/asegment_sri24.dir/asegment_sri24.cxx.o -o ../bin/asegment_sri24 -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +[ 72%] Linking CXX executable ../bin/xform2itk +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/xform2itk.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/xform2itk.dir/xform2itk.cxx.o -o ../bin/xform2itk -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +[ 72%] Linking CXX executable ../bin/detect_spheres_matched_filter +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/detect_spheres_matched_filter.dir/link.txt --verbose=1 +make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/detect_spheres_matched_filter.dir/detect_spheres_matched_filter.cxx.o -o ../bin/detect_spheres_matched_filter -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +[ 72%] Built target unsplit make -f apps/CMakeFiles/sympl.dir/build.make apps/CMakeFiles/sympl.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/sympl.dir/DependInfo.cmake --color= -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/warp.dir/warp.cxx.o -o ../bin/warp -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/sympl.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/sympl.dir/depend.internal". Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/sympl.dir/depend.internal". Scanning dependencies of target sympl make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/sympl.dir/build.make apps/CMakeFiles/sympl.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +[ 72%] Linking CXX executable ../bin/symplx +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/symplx.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/symplx.dir/symplx.cxx.o -o ../bin/symplx -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so [ 72%] Building CXX object apps/CMakeFiles/sympl.dir/sympl.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/sympl.dir/sympl.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/sympl.cxx make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 72%] Built target warp +make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +[ 72%] Built target vtkxform make -f apps/CMakeFiles/streamxform.dir/build.make apps/CMakeFiles/streamxform.dir/depend +[ 72%] Built target asegment_sri24 make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/streamxform.dir/DependInfo.cmake --color= -Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/streamxform.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/streamxform.dir/depend.internal". -Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/streamxform.dir/depend.internal". -Scanning dependencies of target streamxform -make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make -f apps/CMakeFiles/streamxform.dir/build.make apps/CMakeFiles/streamxform.dir/build -make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 72%] Building CXX object apps/CMakeFiles/streamxform.dir/streamxform.cxx.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/streamxform.dir/streamxform.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/streamxform.cxx -In file included from /build/cmtk-3.3.1p1+dfsg/apps/sympl.cxx:35: -/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); - | ^~~~~ -In file included from /build/cmtk-3.3.1p1+dfsg/apps/streamxform.cxx:37: -/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); - | ^~~~~ -[ 72%] Linking CXX executable ../bin/detect_spheres_matched_filter -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/detect_spheres_matched_filter.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/detect_spheres_matched_filter.dir/detect_spheres_matched_filter.cxx.o -o ../bin/detect_spheres_matched_filter -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 72%] Built target detect_spheres_matched_filter make -f apps/CMakeFiles/gmm.dir/build.make apps/CMakeFiles/gmm.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/gmm.dir/DependInfo.cmake --color= +Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/streamxform.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/streamxform.dir/depend.internal". +Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/streamxform.dir/depend.internal". Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/gmm.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/gmm.dir/depend.internal". Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/gmm.dir/depend.internal". +Scanning dependencies of target streamxform +make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' Scanning dependencies of target gmm +make -f apps/CMakeFiles/streamxform.dir/build.make apps/CMakeFiles/streamxform.dir/build make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/gmm.dir/build.make apps/CMakeFiles/gmm.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +[ 72%] Building CXX object apps/CMakeFiles/streamxform.dir/streamxform.cxx.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/streamxform.dir/streamxform.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/streamxform.cxx [ 72%] Building CXX object apps/CMakeFiles/gmm.dir/gmm.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/gmm.dir/gmm.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/gmm.cxx -[ 72%] Linking CXX executable ../bin/xform2dfield -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/xform2dfield.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/xform2dfield.dir/xform2dfield.cxx.o -o ../bin/xform2dfield -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -[ 72%] Linking CXX executable ../bin/vtkxform -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/vtkxform.dir/link.txt --verbose=1 -[ 72%] Linking CXX executable ../bin/xform2itk -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/xform2itk.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/vtkxform.dir/vtkxform.cxx.o -o ../bin/vtkxform -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/xform2itk.dir/xform2itk.cxx.o -o ../bin/xform2itk -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 72%] Built target xform2dfield +[ 72%] Built target xform2itk make -f apps/CMakeFiles/jidb.dir/build.make apps/CMakeFiles/jidb.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/jidb.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/jidb.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/jidb.dir/depend.internal". Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/jidb.dir/depend.internal". -[ 72%] Built target xform2itk +make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +Scanning dependencies of target jidb +make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +make -f apps/CMakeFiles/jidb.dir/build.make apps/CMakeFiles/jidb.dir/build +make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +[ 72%] Built target detect_spheres_matched_filter make -f apps/CMakeFiles/geomatch.dir/build.make apps/CMakeFiles/geomatch.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/geomatch.dir/DependInfo.cmake --color= -Scanning dependencies of target jidb +[ 72%] Building CXX object apps/CMakeFiles/jidb.dir/jidb.cxx.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/jidb.dir/jidb.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/jidb.cxx +Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/geomatch.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/geomatch.dir/depend.internal". +Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/geomatch.dir/depend.internal". +Scanning dependencies of target geomatch make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make -f apps/CMakeFiles/jidb.dir/build.make apps/CMakeFiles/jidb.dir/build -[ 72%] Linking CXX executable ../bin/warp2ps -[ 72%] Built target vtkxform +make -f apps/CMakeFiles/geomatch.dir/build.make apps/CMakeFiles/geomatch.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +[ 73%] Building CXX object apps/CMakeFiles/geomatch.dir/geomatch.cxx.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/geomatch.dir/geomatch.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/geomatch.cxx +make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +[ 73%] Built target symplx make -f apps/CMakeFiles/dbtool.dir/build.make apps/CMakeFiles/dbtool.dir/depend -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/warp2ps.dir/link.txt --verbose=1 make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/dbtool.dir/DependInfo.cmake --color= -Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/geomatch.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/geomatch.dir/depend.internal". -Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/geomatch.dir/depend.internal". -[ 72%] Building CXX object apps/CMakeFiles/jidb.dir/jidb.cxx.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/jidb.dir/jidb.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/jidb.cxx -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/warp2ps.dir/warp2ps.cxx.o -o ../bin/warp2ps -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/dbtool.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/dbtool.dir/depend.internal". Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/dbtool.dir/depend.internal". -Scanning dependencies of target geomatch Scanning dependencies of target dbtool make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/dbtool.dir/build.make apps/CMakeFiles/dbtool.dir/build -make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make -f apps/CMakeFiles/geomatch.dir/build.make apps/CMakeFiles/geomatch.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 73%] Building CXX object apps/CMakeFiles/geomatch.dir/geomatch.cxx.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/geomatch.dir/geomatch.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/geomatch.cxx [ 74%] Building CXX object apps/CMakeFiles/dbtool.dir/dbtool.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/dbtool.dir/dbtool.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/dbtool.cxx [ 75%] Linking CXX executable ../bin/xform2scalar cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/xform2scalar.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/xform2scalar.dir/xform2scalar.cxx.o -o ../bin/xform2scalar -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -[ 75%] Linking CXX executable ../bin/unsplit -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/unsplit.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/unsplit.dir/unsplit.cxx.o -o ../bin/unsplit -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -In file included from /build/cmtk-3.3.1p1+dfsg/apps/gmm.cxx:35: +[ 75%] Linking CXX executable ../bin/warp2ps +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/warp2ps.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/warp2ps.dir/warp2ps.cxx.o -o ../bin/warp2ps -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +[ 75%] Linking CXX executable ../bin/detect_adni_phantom +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/detect_adni_phantom.dir/link.txt --verbose=1 +In file included from /build/cmtk-3.3.1p1+dfsg/apps/sympl.cxx:35: +/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); + | ^~~~~ +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/detect_adni_phantom.dir/detect_adni_phantom.cxx.o -o ../bin/detect_adni_phantom -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +In file included from /build/cmtk-3.3.1p1+dfsg/apps/streamxform.cxx:37: /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); | ^~~~~ make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +In file included from /build/cmtk-3.3.1p1+dfsg/apps/gmm.cxx:35: +/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); + | ^~~~~ [ 75%] Built target warp2ps make -f apps/CMakeFiles/fit_spline_xform.dir/build.make apps/CMakeFiles/fit_spline_xform.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/fit_spline_xform.dir/DependInfo.cmake --color= -[ 75%] Linking CXX executable ../bin/asegment_sri24 -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/asegment_sri24.dir/link.txt --verbose=1 Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/fit_spline_xform.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/fit_spline_xform.dir/depend.internal". Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/fit_spline_xform.dir/depend.internal". -[ 75%] Linking CXX executable ../bin/detect_adni_phantom -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/detect_adni_phantom.dir/link.txt --verbose=1 +make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' Scanning dependencies of target fit_spline_xform -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/asegment_sri24.dir/asegment_sri24.cxx.o -o ../bin/asegment_sri24 -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +[ 75%] Built target xform2scalar make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/fit_spline_xform.dir/build.make apps/CMakeFiles/fit_spline_xform.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/detect_adni_phantom.dir/detect_adni_phantom.cxx.o -o ../bin/detect_adni_phantom -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -[ 75%] Building CXX object apps/CMakeFiles/fit_spline_xform.dir/fit_spline_xform.cxx.o -make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/fit_spline_xform.dir/fit_spline_xform.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/fit_spline_xform.cxx -[ 75%] Built target xform2scalar make -f apps/CMakeFiles/reorient.dir/build.make apps/CMakeFiles/reorient.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/reorient.dir/DependInfo.cmake --color= +[ 75%] Building CXX object apps/CMakeFiles/fit_spline_xform.dir/fit_spline_xform.cxx.o Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/reorient.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/reorient.dir/depend.internal". Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/reorient.dir/depend.internal". +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/fit_spline_xform.dir/fit_spline_xform.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/fit_spline_xform.cxx Scanning dependencies of target reorient make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/reorient.dir/build.make apps/CMakeFiles/reorient.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +[ 75%] Linking CXX executable ../bin/ttest [ 75%] Building CXX object apps/CMakeFiles/reorient.dir/reorient.cxx.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/ttest.dir/link.txt --verbose=1 +In file included from /build/cmtk-3.3.1p1+dfsg/apps/geomatch.cxx:35: +/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); + | ^~~~~ cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/reorient.dir/reorient.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/reorient.cxx +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/ttest.dir/ttest.cxx.o -o ../bin/ttest -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +In file included from /build/cmtk-3.3.1p1+dfsg/apps/jidb.cxx:35: +/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); + | ^~~~~ +In file included from /build/cmtk-3.3.1p1+dfsg/apps/dbtool.cxx:33: +/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); + | ^~~~~ make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 75%] Built target unsplit +[ 75%] Built target detect_adni_phantom make -f apps/CMakeFiles/film.dir/build.make apps/CMakeFiles/film.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/film.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/film.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/film.dir/depend.internal". Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/film.dir/depend.internal". -[ 75%] Built target asegment_sri24 Scanning dependencies of target film -make -f apps/CMakeFiles/fib2image.dir/build.make apps/CMakeFiles/fib2image.dir/depend -make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/fib2image.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/film.dir/build.make apps/CMakeFiles/film.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +[ 75%] Building CXX object apps/CMakeFiles/film.dir/film.cxx.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/film.dir/film.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/film.cxx +[ 75%] Linking CXX executable ../bin/xform2dfield +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/xform2dfield.dir/link.txt --verbose=1 +make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/xform2dfield.dir/xform2dfield.cxx.o -o ../bin/xform2dfield -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +[ 75%] Built target ttest +make -f apps/CMakeFiles/fib2image.dir/build.make apps/CMakeFiles/fib2image.dir/depend +make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/fib2image.dir/DependInfo.cmake --color= Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/fib2image.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/fib2image.dir/depend.internal". Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/fib2image.dir/depend.internal". Scanning dependencies of target fib2image make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/fib2image.dir/build.make apps/CMakeFiles/fib2image.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 75%] Building CXX object apps/CMakeFiles/film.dir/film.cxx.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/film.dir/film.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/film.cxx [ 75%] Building CXX object apps/CMakeFiles/fib2image.dir/fib2image.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/fib2image.dir/fib2image.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/fib2image.cxx +In file included from /build/cmtk-3.3.1p1+dfsg/apps/fit_spline_xform.cxx:36: +/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); + | ^~~~~ make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 75%] Built target detect_adni_phantom +[ 75%] Built target xform2dfield make -f apps/CMakeFiles/fit_affine_xform_landmarks.dir/build.make apps/CMakeFiles/fit_affine_xform_landmarks.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/fit_affine_xform_landmarks.dir/DependInfo.cmake --color= @@ -3032,45 +3088,25 @@ make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/fit_affine_xform_landmarks.dir/build.make apps/CMakeFiles/fit_affine_xform_landmarks.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -In file included from /build/cmtk-3.3.1p1+dfsg/apps/dbtool.cxx:33: -/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); - | ^~~~~ [ 76%] Building CXX object apps/CMakeFiles/fit_affine_xform_landmarks.dir/fit_affine_xform_landmarks.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/fit_affine_xform_landmarks.dir/fit_affine_xform_landmarks.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/fit_affine_xform_landmarks.cxx -In file included from /build/cmtk-3.3.1p1+dfsg/apps/jidb.cxx:35: -/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); - | ^~~~~ -In file included from /build/cmtk-3.3.1p1+dfsg/apps/geomatch.cxx:35: -/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); - | ^~~~~ -In file included from /build/cmtk-3.3.1p1+dfsg/apps/fit_spline_xform.cxx:36: -/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); - | ^~~~~ +[ 77%] Linking CXX executable ../bin/unwarp_image_phantom +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/unwarp_image_phantom.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/unwarp_image_phantom.dir/unwarp_image_phantom.cxx.o -o ../bin/unwarp_image_phantom -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so In file included from /build/cmtk-3.3.1p1+dfsg/apps/reorient.cxx:35: /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); | ^~~~~ -In file included from /build/cmtk-3.3.1p1+dfsg/apps/fib2image.cxx:35: -/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); - | ^~~~~ In file included from /build/cmtk-3.3.1p1+dfsg/apps/film.cxx:35: /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); | ^~~~~ -[ 76%] Linking CXX executable ../bin/ttest -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/ttest.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/ttest.dir/ttest.cxx.o -o ../bin/ttest -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -In file included from /build/cmtk-3.3.1p1+dfsg/apps/fit_affine_xform_landmarks.cxx:37: +In file included from /build/cmtk-3.3.1p1+dfsg/apps/fib2image.cxx:35: /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); | ^~~~~ make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 76%] Built target ttest +[ 77%] Built target unwarp_image_phantom make -f apps/CMakeFiles/fibxform.dir/build.make apps/CMakeFiles/fibxform.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/fibxform.dir/DependInfo.cmake --color= @@ -3080,108 +3116,116 @@ make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/fibxform.dir/build.make apps/CMakeFiles/fibxform.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 77%] Building CXX object apps/CMakeFiles/fibxform.dir/fibxform.cxx.o +[ 78%] Building CXX object apps/CMakeFiles/fibxform.dir/fibxform.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/fibxform.dir/fibxform.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/fibxform.cxx +In file included from /build/cmtk-3.3.1p1+dfsg/apps/fit_affine_xform_landmarks.cxx:37: +/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); + | ^~~~~ In file included from /build/cmtk-3.3.1p1+dfsg/apps/fibxform.cxx:35: /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); | ^~~~~ -[ 78%] Linking CXX executable ../bin/streamxform -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/streamxform.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/streamxform.dir/streamxform.cxx.o -o ../bin/streamxform -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -[ 79%] Linking CXX executable ../bin/unwarp_image_phantom -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/unwarp_image_phantom.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/unwarp_image_phantom.dir/unwarp_image_phantom.cxx.o -o ../bin/unwarp_image_phantom -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +[ 78%] Linking CXX executable ../bin/dcm2image +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/dcm2image.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/dcm2image.dir/dcm2image.cxx.o -o ../bin/dcm2image -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +[ 78%] Linking CXX executable ../bin/geomatch +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/geomatch.dir/link.txt --verbose=1 +[ 78%] Linking CXX executable ../bin/dbtool +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/dbtool.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/geomatch.dir/geomatch.cxx.o -o ../bin/geomatch -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/dbtool.dir/dbtool.cxx.o -o ../bin/dbtool -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 79%] Built target streamxform +[ 78%] Built target dcm2image make -f apps/CMakeFiles/epiunwarp.dir/build.make apps/CMakeFiles/epiunwarp.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/epiunwarp.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/epiunwarp.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/epiunwarp.dir/depend.internal". Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/epiunwarp.dir/depend.internal". -[ 79%] Built target unwarp_image_phantom -make -f apps/CMakeFiles/hausdorff.dir/build.make apps/CMakeFiles/hausdorff.dir/depend -make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/hausdorff.dir/DependInfo.cmake --color= Scanning dependencies of target epiunwarp make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/epiunwarp.dir/build.make apps/CMakeFiles/epiunwarp.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/hausdorff.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/hausdorff.dir/depend.internal". -Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/hausdorff.dir/depend.internal". -[ 79%] Building CXX object apps/CMakeFiles/epiunwarp.dir/epiunwarp.cxx.o +[ 78%] Building CXX object apps/CMakeFiles/epiunwarp.dir/epiunwarp.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/epiunwarp.dir/epiunwarp.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/epiunwarp.cxx -Scanning dependencies of target hausdorff make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make -f apps/CMakeFiles/hausdorff.dir/build.make apps/CMakeFiles/hausdorff.dir/build +[ 78%] Built target geomatch +make -f apps/CMakeFiles/hausdorff.dir/build.make apps/CMakeFiles/hausdorff.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 79%] Building CXX object apps/CMakeFiles/hausdorff.dir/hausdorff.cxx.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/hausdorff.dir/hausdorff.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/hausdorff.cxx -[ 79%] Linking CXX executable ../bin/dcm2image -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/dcm2image.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/dcm2image.dir/dcm2image.cxx.o -o ../bin/dcm2image -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/hausdorff.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 79%] Built target dcm2image +[ 78%] Built target dbtool make -f apps/CMakeFiles/mat2dof.dir/build.make apps/CMakeFiles/mat2dof.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/mat2dof.dir/DependInfo.cmake --color= +Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/hausdorff.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/hausdorff.dir/depend.internal". +Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/hausdorff.dir/depend.internal". Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/mat2dof.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/mat2dof.dir/depend.internal". Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/mat2dof.dir/depend.internal". -[ 79%] Linking CXX executable ../bin/reorient -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/reorient.dir/link.txt --verbose=1 +Scanning dependencies of target hausdorff +make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +make -f apps/CMakeFiles/hausdorff.dir/build.make apps/CMakeFiles/hausdorff.dir/build Scanning dependencies of target mat2dof make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/mat2dof.dir/build.make apps/CMakeFiles/mat2dof.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/reorient.dir/reorient.cxx.o -o ../bin/reorient -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -[ 79%] Building CXX object apps/CMakeFiles/mat2dof.dir/mat2dof.cxx.o +[ 78%] Building CXX object apps/CMakeFiles/hausdorff.dir/hausdorff.cxx.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/hausdorff.dir/hausdorff.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/hausdorff.cxx +[ 78%] Building CXX object apps/CMakeFiles/mat2dof.dir/mat2dof.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/mat2dof.dir/mat2dof.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/mat2dof.cxx +In file included from /build/cmtk-3.3.1p1+dfsg/apps/mat2dof.cxx:36: +/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); + | ^~~~~ In file included from /build/cmtk-3.3.1p1+dfsg/apps/epiunwarp.cxx:35: /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); | ^~~~~ -[ 79%] Linking CXX executable ../bin/fit_affine_xform_landmarks +[ 78%] Linking CXX executable ../bin/fib2image +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/fib2image.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/fib2image.dir/fib2image.cxx.o -o ../bin/fib2image -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +[ 78%] Linking CXX executable ../bin/fit_affine_xform_landmarks cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/fit_affine_xform_landmarks.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/fit_affine_xform_landmarks.dir/fit_affine_xform_landmarks.cxx.o -o ../bin/fit_affine_xform_landmarks -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -[ 79%] Linking CXX executable ../bin/dbtool -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/dbtool.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/dbtool.dir/dbtool.cxx.o -o ../bin/dbtool -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so In file included from /build/cmtk-3.3.1p1+dfsg/apps/hausdorff.cxx:33: /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); | ^~~~~ make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 79%] Built target reorient +make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +[ 78%] Built target fib2image make -f apps/CMakeFiles/regress.dir/build.make apps/CMakeFiles/regress.dir/depend +[ 78%] Linking CXX executable ../bin/reorient +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/reorient.dir/link.txt --verbose=1 make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/regress.dir/DependInfo.cmake --color= +[ 78%] Built target fit_affine_xform_landmarks +make -f apps/CMakeFiles/dwi_mask_bad_slices.dir/build.make apps/CMakeFiles/dwi_mask_bad_slices.dir/depend +make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/dwi_mask_bad_slices.dir/DependInfo.cmake --color= +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/reorient.dir/reorient.cxx.o -o ../bin/reorient -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/regress.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/regress.dir/depend.internal". Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/regress.dir/depend.internal". Scanning dependencies of target regress make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/regress.dir/build.make apps/CMakeFiles/regress.dir/build -make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 79%] Building CXX object apps/CMakeFiles/regress.dir/regress.cxx.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/regress.dir/regress.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/regress.cxx -[ 79%] Linking CXX executable ../bin/geomatch -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/geomatch.dir/link.txt --verbose=1 -make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/geomatch.dir/geomatch.cxx.o -o ../bin/geomatch -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -[ 79%] Built target fit_affine_xform_landmarks -make -f apps/CMakeFiles/dwi_mask_bad_slices.dir/build.make apps/CMakeFiles/dwi_mask_bad_slices.dir/depend -make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/dwi_mask_bad_slices.dir/DependInfo.cmake --color= Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/dwi_mask_bad_slices.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/dwi_mask_bad_slices.dir/depend.internal". Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/dwi_mask_bad_slices.dir/depend.internal". +make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' Scanning dependencies of target dwi_mask_bad_slices make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/dwi_mask_bad_slices.dir/build.make apps/CMakeFiles/dwi_mask_bad_slices.dir/build -make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 79%] Building CXX object apps/CMakeFiles/dwi_mask_bad_slices.dir/dwi_mask_bad_slices.cxx.o +[ 78%] Building CXX object apps/CMakeFiles/regress.dir/regress.cxx.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/regress.dir/regress.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/regress.cxx +[ 78%] Building CXX object apps/CMakeFiles/dwi_mask_bad_slices.dir/dwi_mask_bad_slices.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/dwi_mask_bad_slices.dir/dwi_mask_bad_slices.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/dwi_mask_bad_slices.cxx -[ 79%] Built target dbtool +[ 79%] Linking CXX executable ../bin/streamxform +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/streamxform.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/streamxform.dir/streamxform.cxx.o -o ../bin/streamxform -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +[ 79%] Built target reorient make -f apps/CMakeFiles/histogram.dir/build.make apps/CMakeFiles/histogram.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/histogram.dir/DependInfo.cmake --color= @@ -3194,11 +3238,7 @@ [ 79%] Building CXX object apps/CMakeFiles/histogram.dir/histogram.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/histogram.dir/histogram.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/histogram.cxx make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -In file included from /build/cmtk-3.3.1p1+dfsg/apps/mat2dof.cxx:36: -/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); - | ^~~~~ -[ 79%] Built target geomatch +[ 79%] Built target streamxform make -f apps/CMakeFiles/stream_pixels.dir/build.make apps/CMakeFiles/stream_pixels.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/stream_pixels.dir/DependInfo.cmake --color= @@ -3208,61 +3248,53 @@ make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/stream_pixels.dir/build.make apps/CMakeFiles/stream_pixels.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +[ 79%] Linking CXX executable ../bin/fit_spline_xform +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/fit_spline_xform.dir/link.txt --verbose=1 [ 79%] Building CXX object apps/CMakeFiles/stream_pixels.dir/stream_pixels.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/stream_pixels.dir/stream_pixels.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/stream_pixels.cxx -[ 79%] Linking CXX executable ../bin/fib2image -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/fib2image.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/fib2image.dir/fib2image.cxx.o -o ../bin/fib2image -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -[ 79%] Linking CXX executable ../bin/sympl -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/sympl.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/sympl.dir/sympl.cxx.o -o ../bin/sympl -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -In file included from /build/cmtk-3.3.1p1+dfsg/apps/regress.cxx:37: +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/fit_spline_xform.dir/fit_spline_xform.cxx.o -o ../bin/fit_spline_xform -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +[ 79%] Linking CXX executable ../bin/volume_reconstruction +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/volume_reconstruction.dir/link.txt --verbose=1 +[ 80%] Linking CXX executable ../bin/gmm +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmm.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/volume_reconstruction.dir/volume_reconstruction.cxx.o -o ../bin/volume_reconstruction -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/gmm.dir/gmm.cxx.o -o ../bin/gmm -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +In file included from /build/cmtk-3.3.1p1+dfsg/apps/dwi_mask_bad_slices.cxx:35: /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); | ^~~~~ -make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 79%] Built target fib2image -make -f apps/CMakeFiles/average_images.dir/build.make apps/CMakeFiles/average_images.dir/depend -make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/average_images.dir/DependInfo.cmake --color= -Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/average_images.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/average_images.dir/depend.internal". -Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/average_images.dir/depend.internal". -In file included from /build/cmtk-3.3.1p1+dfsg/apps/dwi_mask_bad_slices.cxx:35: +In file included from /build/cmtk-3.3.1p1+dfsg/apps/regress.cxx:37: /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); | ^~~~~ -Scanning dependencies of target average_images make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +[ 80%] Built target fit_spline_xform +make -f apps/CMakeFiles/average_images.dir/build.make apps/CMakeFiles/average_images.dir/depend make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make -f apps/CMakeFiles/average_images.dir/build.make apps/CMakeFiles/average_images.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 79%] Built target sympl +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/average_images.dir/DependInfo.cmake --color= +[ 80%] Built target gmm make -f apps/CMakeFiles/fit_affine_dfield.dir/build.make apps/CMakeFiles/fit_affine_dfield.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/fit_affine_dfield.dir/DependInfo.cmake --color= -[ 79%] Building CXX object apps/CMakeFiles/average_images.dir/average_images.cxx.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/average_images.dir/average_images.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/average_images.cxx +Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/average_images.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/average_images.dir/depend.internal". +Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/average_images.dir/depend.internal". Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/fit_affine_dfield.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/fit_affine_dfield.dir/depend.internal". Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/fit_affine_dfield.dir/depend.internal". +Scanning dependencies of target average_images Scanning dependencies of target fit_affine_dfield make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/fit_affine_dfield.dir/build.make apps/CMakeFiles/fit_affine_dfield.dir/build +make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 79%] Building CXX object apps/CMakeFiles/fit_affine_dfield.dir/fit_affine_dfield.cxx.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/fit_affine_dfield.dir/fit_affine_dfield.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/fit_affine_dfield.cxx -In file included from /build/cmtk-3.3.1p1+dfsg/apps/histogram.cxx:37: -/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); - | ^~~~~ -[ 80%] Linking CXX executable ../bin/gmm -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmm.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/gmm.dir/gmm.cxx.o -o ../bin/gmm -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -In file included from /build/cmtk-3.3.1p1+dfsg/apps/stream_pixels.cxx:35: -/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); - | ^~~~~ +make -f apps/CMakeFiles/average_images.dir/build.make apps/CMakeFiles/average_images.dir/build make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 80%] Built target gmm +make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +[ 80%] Building CXX object apps/CMakeFiles/average_images.dir/average_images.cxx.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/average_images.dir/average_images.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/average_images.cxx +[ 80%] Building CXX object apps/CMakeFiles/fit_affine_dfield.dir/fit_affine_dfield.cxx.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/fit_affine_dfield.dir/fit_affine_dfield.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/fit_affine_dfield.cxx +[ 80%] Built target volume_reconstruction make -f apps/CMakeFiles/asegment.dir/build.make apps/CMakeFiles/asegment.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/asegment.dir/DependInfo.cmake --color= @@ -3274,22 +3306,34 @@ make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' [ 80%] Building CXX object apps/CMakeFiles/asegment.dir/asegment.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/asegment.dir/asegment.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/asegment.cxx -In file included from /build/cmtk-3.3.1p1+dfsg/apps/fit_affine_dfield.cxx:36: +In file included from /build/cmtk-3.3.1p1+dfsg/apps/histogram.cxx:37: /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); | ^~~~~ -[ 80%] Linking CXX executable ../bin/fit_spline_xform -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/fit_spline_xform.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/fit_spline_xform.dir/fit_spline_xform.cxx.o -o ../bin/fit_spline_xform -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -In file included from /build/cmtk-3.3.1p1+dfsg/apps/average_images.cxx:35: +In file included from /build/cmtk-3.3.1p1+dfsg/apps/stream_pixels.cxx:35: +/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); + | ^~~~~ +In file included from /build/cmtk-3.3.1p1+dfsg/apps/fit_affine_dfield.cxx:36: /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); | ^~~~~ [ 81%] Linking CXX executable ../bin/hausdorff cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/hausdorff.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/hausdorff.dir/hausdorff.cxx.o -o ../bin/hausdorff -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +In file included from /build/cmtk-3.3.1p1+dfsg/apps/average_images.cxx:35: +/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); + | ^~~~~ +[ 81%] Linking CXX executable ../bin/fibxform +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/fibxform.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/fibxform.dir/fibxform.cxx.o -o ../bin/fibxform -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +In file included from /build/cmtk-3.3.1p1+dfsg/apps/asegment.cxx:35: +/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); + | ^~~~~ make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 81%] Built target fit_spline_xform +[ 81%] Built target hausdorff make -f apps/CMakeFiles/pxsearch.dir/build.make apps/CMakeFiles/pxsearch.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/pxsearch.dir/DependInfo.cmake --color= @@ -3302,14 +3346,10 @@ [ 81%] Building CXX object apps/CMakeFiles/pxsearch.dir/pxsearch.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/pxsearch.dir/pxsearch.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/pxsearch.cxx make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 81%] Built target hausdorff +[ 81%] Built target fibxform make -f apps/CMakeFiles/fit_affine_xform.dir/build.make apps/CMakeFiles/fit_affine_xform.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/fit_affine_xform.dir/DependInfo.cmake --color= -In file included from /build/cmtk-3.3.1p1+dfsg/apps/asegment.cxx:35: -/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); - | ^~~~~ Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/fit_affine_xform.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/fit_affine_xform.dir/depend.internal". Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/fit_affine_xform.dir/depend.internal". Scanning dependencies of target fit_affine_xform @@ -3318,181 +3358,167 @@ make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' [ 81%] Building CXX object apps/CMakeFiles/fit_affine_xform.dir/fit_affine_xform.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/fit_affine_xform.dir/fit_affine_xform.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/fit_affine_xform.cxx -[ 81%] Linking CXX executable ../bin/volume_reconstruction -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/volume_reconstruction.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/volume_reconstruction.dir/volume_reconstruction.cxx.o -o ../bin/volume_reconstruction -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -[ 81%] Linking CXX executable ../bin/fibxform -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/fibxform.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/fibxform.dir/fibxform.cxx.o -o ../bin/fibxform -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +[ 81%] Linking CXX executable ../bin/sympl +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/sympl.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/sympl.dir/sympl.cxx.o -o ../bin/sympl -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 81%] Built target volume_reconstruction +[ 81%] Built target sympl make -f apps/CMakeFiles/lvote.dir/build.make apps/CMakeFiles/lvote.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/lvote.dir/DependInfo.cmake --color= -In file included from /build/cmtk-3.3.1p1+dfsg/apps/pxsearch.cxx:37: -/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); - | ^~~~~ Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/lvote.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/lvote.dir/depend.internal". Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/lvote.dir/depend.internal". Scanning dependencies of target lvote make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/lvote.dir/build.make apps/CMakeFiles/lvote.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +In file included from /build/cmtk-3.3.1p1+dfsg/apps/pxsearch.cxx:37: +/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); + | ^~~~~ [ 82%] Building CXX object apps/CMakeFiles/lvote.dir/lvote.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/lvote.dir/lvote.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/lvote.cxx In file included from /build/cmtk-3.3.1p1+dfsg/apps/fit_affine_xform.cxx:36: /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); | ^~~~~ +[ 82%] Linking CXX executable ../bin/fit_affine_dfield +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/fit_affine_dfield.dir/link.txt --verbose=1 +[ 83%] Linking CXX executable ../bin/mat2dof +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/mat2dof.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/fit_affine_dfield.dir/fit_affine_dfield.cxx.o -o ../bin/fit_affine_dfield -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/mat2dof.dir/mat2dof.cxx.o -o ../bin/mat2dof -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 82%] Built target fibxform +make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +[ 83%] Built target fit_affine_dfield make -f apps/CMakeFiles/mk_nifti_hdr.dir/build.make apps/CMakeFiles/mk_nifti_hdr.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/mk_nifti_hdr.dir/DependInfo.cmake --color= +[ 83%] Built target mat2dof +make -f apps/CMakeFiles/vol2csv.dir/build.make apps/CMakeFiles/vol2csv.dir/depend +make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/vol2csv.dir/DependInfo.cmake --color= Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/mk_nifti_hdr.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/mk_nifti_hdr.dir/depend.internal". Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/mk_nifti_hdr.dir/depend.internal". Scanning dependencies of target mk_nifti_hdr make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/mk_nifti_hdr.dir/build.make apps/CMakeFiles/mk_nifti_hdr.dir/build -make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 82%] Building CXX object apps/CMakeFiles/mk_nifti_hdr.dir/mk_nifti_hdr.cxx.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/mk_nifti_hdr.dir/mk_nifti_hdr.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/mk_nifti_hdr.cxx In file included from /build/cmtk-3.3.1p1+dfsg/apps/lvote.cxx:35: /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); | ^~~~~ -[ 82%] Linking CXX executable ../bin/fit_affine_dfield -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/fit_affine_dfield.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/fit_affine_dfield.dir/fit_affine_dfield.cxx.o -o ../bin/fit_affine_dfield -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 82%] Built target fit_affine_dfield -make -f apps/CMakeFiles/vol2csv.dir/build.make apps/CMakeFiles/vol2csv.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/vol2csv.dir/DependInfo.cmake --color= Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/vol2csv.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/vol2csv.dir/depend.internal". Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/vol2csv.dir/depend.internal". +[ 83%] Building CXX object apps/CMakeFiles/mk_nifti_hdr.dir/mk_nifti_hdr.cxx.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/mk_nifti_hdr.dir/mk_nifti_hdr.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/mk_nifti_hdr.cxx Scanning dependencies of target vol2csv make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/vol2csv.dir/build.make apps/CMakeFiles/vol2csv.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -In file included from /build/cmtk-3.3.1p1+dfsg/apps/mk_nifti_hdr.cxx:35: -/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); - | ^~~~~ -[ 82%] Building CXX object apps/CMakeFiles/vol2csv.dir/vol2csv.cxx.o +[ 83%] Building CXX object apps/CMakeFiles/vol2csv.dir/vol2csv.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/vol2csv.dir/vol2csv.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/vol2csv.cxx -[ 82%] Linking CXX executable ../bin/epiunwarp -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/epiunwarp.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/epiunwarp.dir/epiunwarp.cxx.o -o ../bin/epiunwarp -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -[ 83%] Linking CXX executable ../bin/mat2dof -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/mat2dof.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/mat2dof.dir/mat2dof.cxx.o -o ../bin/mat2dof -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +[ 83%] Linking CXX executable ../bin/jidb +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/jidb.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/jidb.dir/jidb.cxx.o -o ../bin/jidb -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 83%] Built target epiunwarp +[ 83%] Built target jidb make -f apps/CMakeFiles/groupwise_warp.dir/build.make apps/CMakeFiles/groupwise_warp.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/groupwise_warp.dir/DependInfo.cmake --color= Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/groupwise_warp.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/groupwise_warp.dir/depend.internal". Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/groupwise_warp.dir/depend.internal". -[ 83%] Linking CXX executable ../bin/asegment -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/asegment.dir/link.txt --verbose=1 Scanning dependencies of target groupwise_warp make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/groupwise_warp.dir/build.make apps/CMakeFiles/groupwise_warp.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/asegment.dir/asegment.cxx.o -o ../bin/asegment -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -[ 83%] Built target mat2dof [ 83%] Building CXX object apps/CMakeFiles/groupwise_warp.dir/groupwise_warp.cxx.o -make -f apps/CMakeFiles/split.dir/build.make apps/CMakeFiles/split.dir/depend cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/groupwise_warp.dir/groupwise_warp.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/groupwise_warp.cxx +In file included from /build/cmtk-3.3.1p1+dfsg/apps/mk_nifti_hdr.cxx:35: +/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); + | ^~~~~ +In file included from /build/cmtk-3.3.1p1+dfsg/apps/vol2csv.cxx:35: +/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); + | ^~~~~ +[ 83%] Linking CXX executable ../bin/asegment +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/asegment.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/asegment.dir/asegment.cxx.o -o ../bin/asegment -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +[ 83%] Linking CXX executable ../bin/epiunwarp +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/epiunwarp.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/epiunwarp.dir/epiunwarp.cxx.o -o ../bin/epiunwarp -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +[ 83%] Linking CXX executable ../bin/stream_pixels +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/stream_pixels.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/stream_pixels.dir/stream_pixels.cxx.o -o ../bin/stream_pixels -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +[ 83%] Built target asegment +make -f apps/CMakeFiles/split.dir/build.make apps/CMakeFiles/split.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/split.dir/DependInfo.cmake --color= Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/split.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/split.dir/depend.internal". Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/split.dir/depend.internal". -[ 83%] Linking CXX executable ../bin/stream_pixels -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/stream_pixels.dir/link.txt --verbose=1 Scanning dependencies of target split make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/split.dir/build.make apps/CMakeFiles/split.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/stream_pixels.dir/stream_pixels.cxx.o -o ../bin/stream_pixels -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so [ 83%] Building CXX object apps/CMakeFiles/split.dir/split.cxx.o -In file included from /build/cmtk-3.3.1p1+dfsg/apps/vol2csv.cxx:35: -/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); - | ^~~~~ cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/split.dir/split.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/split.cxx -[ 83%] Linking CXX executable ../bin/jidb -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/jidb.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/jidb.dir/jidb.cxx.o -o ../bin/jidb -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 83%] Built target asegment +make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +[ 83%] Built target stream_pixels +[ 83%] Built target epiunwarp make -f apps/CMakeFiles/avg_adm.dir/build.make apps/CMakeFiles/avg_adm.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/avg_adm.dir/DependInfo.cmake --color= -Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/avg_adm.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/avg_adm.dir/depend.internal". -Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/avg_adm.dir/depend.internal". -Scanning dependencies of target avg_adm -make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make -f apps/CMakeFiles/avg_adm.dir/build.make apps/CMakeFiles/avg_adm.dir/build -make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 83%] Building CXX object apps/CMakeFiles/avg_adm.dir/avg_adm.cxx.o -make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/avg_adm.dir/avg_adm.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/avg_adm.cxx -[ 83%] Built target stream_pixels make -f apps/CMakeFiles/registrationx.dir/build.make apps/CMakeFiles/registrationx.dir/depend -make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/registrationx.dir/DependInfo.cmake --color= -[ 83%] Built target jidb -make -f apps/CMakeFiles/groupwise_affine.dir/build.make apps/CMakeFiles/groupwise_affine.dir/depend +Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/avg_adm.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/avg_adm.dir/depend.internal". +Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/avg_adm.dir/depend.internal". Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/registrationx.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/registrationx.dir/depend.internal". Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/registrationx.dir/depend.internal". -make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/groupwise_affine.dir/DependInfo.cmake --color= +Scanning dependencies of target avg_adm Scanning dependencies of target registrationx make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/registrationx.dir/build.make apps/CMakeFiles/registrationx.dir/build +make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/groupwise_affine.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/groupwise_affine.dir/depend.internal". -Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/groupwise_affine.dir/depend.internal". +make -f apps/CMakeFiles/avg_adm.dir/build.make apps/CMakeFiles/avg_adm.dir/build +make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +[ 83%] Building CXX object apps/CMakeFiles/avg_adm.dir/avg_adm.cxx.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/avg_adm.dir/avg_adm.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/avg_adm.cxx [ 83%] Building CXX object apps/CMakeFiles/registrationx.dir/registrationx.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/registrationx.dir/registrationx.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/registrationx.cxx -Scanning dependencies of target groupwise_affine -make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make -f apps/CMakeFiles/groupwise_affine.dir/build.make apps/CMakeFiles/groupwise_affine.dir/build -make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 83%] Building CXX object apps/CMakeFiles/groupwise_affine.dir/groupwise_affine.cxx.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/groupwise_affine.dir/groupwise_affine.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/groupwise_affine.cxx In file included from /build/cmtk-3.3.1p1+dfsg/apps/groupwise_warp.cxx:39: /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); | ^~~~~ -In file included from /build/cmtk-3.3.1p1+dfsg/apps/split.cxx:35: -/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); - | ^~~~~ [ 83%] Linking CXX executable ../bin/histogram cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/histogram.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/histogram.dir/histogram.cxx.o -o ../bin/histogram -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -[ 84%] Linking CXX executable ../bin/dwi_mask_bad_slices -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/dwi_mask_bad_slices.dir/link.txt --verbose=1 -[ 84%] Linking CXX executable ../bin/regress -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/regress.dir/link.txt --verbose=1 -In file included from /build/cmtk-3.3.1p1+dfsg/apps/avg_adm.cxx:35: +In file included from /build/cmtk-3.3.1p1+dfsg/apps/split.cxx:35: /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); | ^~~~~ +[ 83%] Linking CXX executable ../bin/regress +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/regress.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/regress.dir/regress.cxx.o -o ../bin/regress -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/dwi_mask_bad_slices.dir/dwi_mask_bad_slices.cxx.o -o ../bin/dwi_mask_bad_slices -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -In file included from /build/cmtk-3.3.1p1+dfsg/apps/groupwise_affine.cxx:39: -/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); - | ^~~~~ make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 84%] Built target histogram +[ 83%] Built target histogram +make -f apps/CMakeFiles/groupwise_affine.dir/build.make apps/CMakeFiles/groupwise_affine.dir/depend +make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/groupwise_affine.dir/DependInfo.cmake --color= +Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/groupwise_affine.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/groupwise_affine.dir/depend.internal". +Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/groupwise_affine.dir/depend.internal". +Scanning dependencies of target groupwise_affine +make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +make -f apps/CMakeFiles/groupwise_affine.dir/build.make apps/CMakeFiles/groupwise_affine.dir/build +make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +[ 83%] Building CXX object apps/CMakeFiles/groupwise_affine.dir/groupwise_affine.cxx.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/groupwise_affine.dir/groupwise_affine.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/groupwise_affine.cxx +[ 83%] Built target regress make -f apps/CMakeFiles/mk_analyze_hdr.dir/build.make apps/CMakeFiles/mk_analyze_hdr.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/mk_analyze_hdr.dir/DependInfo.cmake --color= @@ -3502,26 +3528,31 @@ make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/mk_analyze_hdr.dir/build.make apps/CMakeFiles/mk_analyze_hdr.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 84%] Building CXX object apps/CMakeFiles/mk_analyze_hdr.dir/mk_analyze_hdr.cxx.o +[ 83%] Building CXX object apps/CMakeFiles/mk_analyze_hdr.dir/mk_analyze_hdr.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/mk_analyze_hdr.dir/mk_analyze_hdr.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/mk_analyze_hdr.cxx +[ 83%] Linking CXX executable ../bin/film +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/film.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/film.dir/film.cxx.o -o ../bin/film -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +In file included from /build/cmtk-3.3.1p1+dfsg/apps/avg_adm.cxx:35: +/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); + | ^~~~~ +[ 84%] Linking CXX executable ../bin/dwi_mask_bad_slices +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/dwi_mask_bad_slices.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 84%] Built target regress +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/dwi_mask_bad_slices.dir/dwi_mask_bad_slices.cxx.o -o ../bin/dwi_mask_bad_slices -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +[ 84%] Built target film make -f apps/CMakeFiles/average_labels.dir/build.make apps/CMakeFiles/average_labels.dir/depend -make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/average_labels.dir/DependInfo.cmake --color= -[ 84%] Built target dwi_mask_bad_slices -make -f apps/CMakeFiles/concat_affine.dir/build.make apps/CMakeFiles/concat_affine.dir/depend Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/average_labels.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/average_labels.dir/depend.internal". Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/average_labels.dir/depend.internal". -make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/concat_affine.dir/DependInfo.cmake --color= Scanning dependencies of target average_labels make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/average_labels.dir/build.make apps/CMakeFiles/average_labels.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/concat_affine.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/concat_affine.dir/depend.internal". -Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/concat_affine.dir/depend.internal". +[ 84%] Building CXX object apps/CMakeFiles/average_labels.dir/average_labels.cxx.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/average_labels.dir/average_labels.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/average_labels.cxx In file included from /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkImagePairRegistration.h:39, from /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkImagePairAffineRegistration.h:41, from /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkImagePairAffineRegistrationCommandLine.h:38, @@ -3529,71 +3560,88 @@ /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); | ^~~~~ -[ 84%] Building CXX object apps/CMakeFiles/average_labels.dir/average_labels.cxx.o +In file included from /build/cmtk-3.3.1p1+dfsg/apps/mk_analyze_hdr.cxx:35: +/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); + | ^~~~~ +make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +In file included from /build/cmtk-3.3.1p1+dfsg/apps/groupwise_affine.cxx:39: +/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); + | ^~~~~ +[ 84%] Built target dwi_mask_bad_slices +make -f apps/CMakeFiles/concat_affine.dir/build.make apps/CMakeFiles/concat_affine.dir/depend +make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/concat_affine.dir/DependInfo.cmake --color= +[ 84%] Linking CXX executable ../bin/average_images +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/average_images.dir/link.txt --verbose=1 +Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/concat_affine.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/concat_affine.dir/depend.internal". +Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/concat_affine.dir/depend.internal". +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/average_images.dir/average_images.cxx.o -o ../bin/average_images -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so Scanning dependencies of target concat_affine -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/average_labels.dir/average_labels.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/average_labels.cxx make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/concat_affine.dir/build.make apps/CMakeFiles/concat_affine.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' [ 84%] Building CXX object apps/CMakeFiles/concat_affine.dir/concat_affine.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/concat_affine.dir/concat_affine.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/concat_affine.cxx -[ 84%] Linking CXX executable ../bin/film -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/film.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/film.dir/film.cxx.o -o ../bin/film -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so [ 84%] Linking CXX executable ../bin/pxsearch cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/pxsearch.dir/link.txt --verbose=1 -make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/pxsearch.dir/pxsearch.cxx.o -o ../bin/pxsearch -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -[ 84%] Built target film -make -f apps/CMakeFiles/warpx.dir/build.make apps/CMakeFiles/warpx.dir/depend -make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/warpx.dir/DependInfo.cmake --color= -[ 84%] Linking CXX executable ../bin/average_images -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/average_images.dir/link.txt --verbose=1 [ 84%] Linking CXX executable ../bin/fit_affine_xform cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/fit_affine_xform.dir/link.txt --verbose=1 -Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/warpx.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/warpx.dir/depend.internal". -Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/warpx.dir/depend.internal". -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/average_images.dir/average_images.cxx.o -o ../bin/average_images -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/fit_affine_xform.dir/fit_affine_xform.cxx.o -o ../bin/fit_affine_xform -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -Scanning dependencies of target warpx make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make -f apps/CMakeFiles/warpx.dir/build.make apps/CMakeFiles/warpx.dir/build +[ 84%] Built target average_images +make -f apps/CMakeFiles/warpx.dir/build.make apps/CMakeFiles/warpx.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 84%] Building CXX object apps/CMakeFiles/warpx.dir/warpx.cxx.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/warpx.dir/warpx.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/warpx.cxx +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/warpx.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/warpx.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/warpx.dir/depend.internal". +Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/warpx.dir/depend.internal". [ 84%] Built target pxsearch make -f apps/CMakeFiles/volume_injection.dir/build.make apps/CMakeFiles/volume_injection.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/volume_injection.dir/DependInfo.cmake --color= +Scanning dependencies of target warpx +make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +make -f apps/CMakeFiles/warpx.dir/build.make apps/CMakeFiles/warpx.dir/build +make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/volume_injection.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/volume_injection.dir/depend.internal". Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/volume_injection.dir/depend.internal". -[ 84%] Built target fit_affine_xform -make -f apps/CMakeFiles/groupwise_init.dir/build.make apps/CMakeFiles/groupwise_init.dir/depend +[ 84%] Building CXX object apps/CMakeFiles/warpx.dir/warpx.cxx.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/warpx.dir/warpx.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/warpx.cxx Scanning dependencies of target volume_injection -make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/groupwise_init.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/volume_injection.dir/build.make apps/CMakeFiles/volume_injection.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +[ 85%] Linking CXX executable ../bin/registrationx +[ 85%] Built target fit_affine_xform +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/registrationx.dir/link.txt --verbose=1 +make -f apps/CMakeFiles/groupwise_init.dir/build.make apps/CMakeFiles/groupwise_init.dir/depend +make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/groupwise_init.dir/DependInfo.cmake --color= +[ 85%] Building CXX object apps/CMakeFiles/volume_injection.dir/volume_injection.cxx.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/volume_injection.dir/volume_injection.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/volume_injection.cxx +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/registrationx.dir/registrationx.cxx.o -o ../bin/registrationx -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/groupwise_init.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/groupwise_init.dir/depend.internal". Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/groupwise_init.dir/depend.internal". -[ 84%] Building CXX object apps/CMakeFiles/volume_injection.dir/volume_injection.cxx.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/volume_injection.dir/volume_injection.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/volume_injection.cxx Scanning dependencies of target groupwise_init make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/groupwise_init.dir/build.make apps/CMakeFiles/groupwise_init.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 85%] Building CXX object apps/CMakeFiles/groupwise_init.dir/groupwise_init.cxx.o +In file included from /build/cmtk-3.3.1p1+dfsg/apps/average_labels.cxx:37: +/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); + | ^~~~~ +[ 86%] Building CXX object apps/CMakeFiles/groupwise_init.dir/groupwise_init.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/groupwise_init.dir/groupwise_init.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/groupwise_init.cxx -make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -In file included from /build/cmtk-3.3.1p1+dfsg/apps/mk_analyze_hdr.cxx:35: +In file included from /build/cmtk-3.3.1p1+dfsg/apps/concat_affine.cxx:36: /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); | ^~~~~ -[ 85%] Built target average_images +make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +[ 86%] Built target registrationx make -f apps/CMakeFiles/mk_adni_phantom.dir/build.make apps/CMakeFiles/mk_adni_phantom.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/mk_adni_phantom.dir/DependInfo.cmake --color= @@ -3603,47 +3651,68 @@ make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/mk_adni_phantom.dir/build.make apps/CMakeFiles/mk_adni_phantom.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 86%] Building CXX object apps/CMakeFiles/mk_adni_phantom.dir/mk_adni_phantom.cxx.o +[ 87%] Building CXX object apps/CMakeFiles/mk_adni_phantom.dir/mk_adni_phantom.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/mk_adni_phantom.dir/mk_adni_phantom.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/mk_adni_phantom.cxx -[ 87%] Linking CXX executable ../bin/registrationx -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/registrationx.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/registrationx.dir/registrationx.cxx.o -o ../bin/registrationx -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -In file included from /build/cmtk-3.3.1p1+dfsg/apps/concat_affine.cxx:36: +In file included from /build/cmtk-3.3.1p1+dfsg/apps/groupwise_init.cxx:39: /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); | ^~~~~ -In file included from /build/cmtk-3.3.1p1+dfsg/apps/average_labels.cxx:37: +[ 88%] Linking CXX executable ../bin/mk_nifti_hdr +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/mk_nifti_hdr.dir/link.txt --verbose=1 +In file included from /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkImagePairRegistration.h:39, + from /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkImagePairNonrigidRegistration.h:40, + from /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkImagePairNonrigidRegistrationCommandLine.h:38, + from /build/cmtk-3.3.1p1+dfsg/apps/warpx.cxx:35: +/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); + | ^~~~~ +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/mk_nifti_hdr.dir/mk_nifti_hdr.cxx.o -o ../bin/mk_nifti_hdr -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +In file included from /build/cmtk-3.3.1p1+dfsg/apps/volume_injection.cxx:35: /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); | ^~~~~ make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 87%] Built target registrationx +[ 88%] Built target mk_nifti_hdr make -f apps/CMakeFiles/sbai.dir/build.make apps/CMakeFiles/sbai.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/sbai.dir/DependInfo.cmake --color= -[ 88%] Linking CXX executable ../bin/mk_nifti_hdr -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/mk_nifti_hdr.dir/link.txt --verbose=1 Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/sbai.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/sbai.dir/depend.internal". Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/sbai.dir/depend.internal". -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/mk_nifti_hdr.dir/mk_nifti_hdr.cxx.o -o ../bin/mk_nifti_hdr -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so Scanning dependencies of target sbai make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/sbai.dir/build.make apps/CMakeFiles/sbai.dir/build +In file included from /build/cmtk-3.3.1p1+dfsg/apps/mk_adni_phantom.cxx:35: +/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); + | ^~~~~ make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' [ 88%] Building CXX object apps/CMakeFiles/sbai.dir/sbai.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/sbai.dir/sbai.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/sbai.cxx [ 88%] Linking CXX executable ../bin/lvote cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/lvote.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/lvote.dir/lvote.cxx.o -o ../bin/lvote -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +[ 88%] Linking CXX executable ../bin/warpx +In file included from /usr/include/string.h:495, + from /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:49, + from /build/cmtk-3.3.1p1+dfsg/apps/mk_analyze_hdr.cxx:35: +In function 'char* strncpy(char*, const char*, size_t)', + inlined from 'void cmtk::FileHeader::StoreFieldString(size_t, const char*, size_t)' at /build/cmtk-3.3.1p1+dfsg/libs/IO/cmtkFileHeader.h:74:14, + inlined from 'void cmtk::FileHeader::StoreFieldString(size_t, const char*, size_t)' at /build/cmtk-3.3.1p1+dfsg/libs/IO/cmtkFileHeader.h:71:8, + inlined from 'int doMain(int, const char**)' at /build/cmtk-3.3.1p1+dfsg/apps/mk_analyze_hdr.cxx:275:28: +/usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' specified bound depends on the length of the source argument [-Wstringop-overflow=] + 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); + | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/cmtk-3.3.1p1+dfsg/apps/mk_analyze_hdr.cxx: In function 'int doMain(int, const char**)': +/build/cmtk-3.3.1p1+dfsg/apps/mk_analyze_hdr.cxx:275:72: note: length computed here + 275 | header.StoreFieldString( 148, Description, std::min( strlen( Description )+1, 80 ) ); + | ~~~~~~^~~~~~~~~~~~~~~ +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/warpx.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/warpx.dir/warpx.cxx.o -o ../bin/warpx -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 88%] Built target mk_nifti_hdr +[ 88%] Built target lvote make -f apps/CMakeFiles/describe.dir/build.make apps/CMakeFiles/describe.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/describe.dir/DependInfo.cmake --color= -In file included from /build/cmtk-3.3.1p1+dfsg/apps/volume_injection.cxx:35: -/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); - | ^~~~~ Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/describe.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/describe.dir/depend.internal". Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/describe.dir/depend.internal". Scanning dependencies of target describe @@ -3652,12 +3721,8 @@ make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' [ 88%] Building CXX object apps/CMakeFiles/describe.dir/describe.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/describe.dir/describe.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/describe.cxx -In file included from /build/cmtk-3.3.1p1+dfsg/apps/groupwise_init.cxx:39: -/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); - | ^~~~~ make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 88%] Built target lvote +[ 88%] Built target warpx make -f apps/CMakeFiles/average_affine.dir/build.make apps/CMakeFiles/average_affine.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/average_affine.dir/DependInfo.cmake --color= @@ -3669,32 +3734,33 @@ make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' [ 89%] Building CXX object apps/CMakeFiles/average_affine.dir/average_affine.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/average_affine.dir/average_affine.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/average_affine.cxx -In file included from /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkImagePairRegistration.h:39, - from /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkImagePairNonrigidRegistration.h:40, - from /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkImagePairNonrigidRegistrationCommandLine.h:38, - from /build/cmtk-3.3.1p1+dfsg/apps/warpx.cxx:35: -/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); - | ^~~~~ -In file included from /build/cmtk-3.3.1p1+dfsg/apps/mk_adni_phantom.cxx:35: -/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); - | ^~~~~ In file included from /build/cmtk-3.3.1p1+dfsg/apps/sbai.cxx:37: /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); | ^~~~~ +[ 89%] Linking CXX executable ../bin/mcwarp +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/mcwarp.dir/link.txt --verbose=1 +[ 89%] Linking CXX executable ../bin/vol2csv +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/vol2csv.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/vol2csv.dir/vol2csv.cxx.o -o ../bin/vol2csv -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/mcwarp.dir/mcwarp.cxx.o -o ../bin/mcwarp -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so In file included from /build/cmtk-3.3.1p1+dfsg/apps/describe.cxx:35: /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); | ^~~~~ -In file included from /build/cmtk-3.3.1p1+dfsg/apps/average_affine.cxx:36: -/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); - | ^~~~~ -[ 89%] Linking CXX executable ../bin/warpx -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/warpx.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/warpx.dir/warpx.cxx.o -o ../bin/warpx -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +[ 89%] Built target vol2csv +make -f apps/CMakeFiles/glm.dir/build.make apps/CMakeFiles/glm.dir/depend +make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/glm.dir/DependInfo.cmake --color= +Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/glm.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/glm.dir/depend.internal". +Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/glm.dir/depend.internal". +Scanning dependencies of target glm +make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +make -f apps/CMakeFiles/glm.dir/build.make apps/CMakeFiles/glm.dir/build +make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +[ 89%] Building CXX object apps/CMakeFiles/glm.dir/glm.cxx.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/glm.dir/glm.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/glm.cxx /build/cmtk-3.3.1p1+dfsg/apps/describe.cxx: In function 'void DescribeImage(const char*)': /build/cmtk-3.3.1p1+dfsg/apps/describe.cxx:88:30: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long long int' [-Wformat=] 88 | fprintf( stdout, "XDIM\t%d\nYDIM\t%d\nZDIM\t%d\n", volume->GetDims()[cmtk::AXIS_X], volume->GetDims()[cmtk::AXIS_Y], volume->GetDims()[cmtk::AXIS_Z] ); @@ -3732,36 +3798,10 @@ | | | int | %lld -[ 89%] Linking CXX executable ../bin/mcwarp -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/mcwarp.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/mcwarp.dir/mcwarp.cxx.o -o ../bin/mcwarp -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 89%] Built target warpx -make -f apps/CMakeFiles/glm.dir/build.make apps/CMakeFiles/glm.dir/depend -make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/glm.dir/DependInfo.cmake --color= -Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/glm.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/glm.dir/depend.internal". -Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/glm.dir/depend.internal". -Scanning dependencies of target glm -make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make -f apps/CMakeFiles/glm.dir/build.make apps/CMakeFiles/glm.dir/build -make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 89%] Building CXX object apps/CMakeFiles/glm.dir/glm.cxx.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/glm.dir/glm.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/glm.cxx -In file included from /usr/include/string.h:495, - from /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:49, - from /build/cmtk-3.3.1p1+dfsg/apps/mk_analyze_hdr.cxx:35: -In function 'char* strncpy(char*, const char*, size_t)', - inlined from 'void cmtk::FileHeader::StoreFieldString(size_t, const char*, size_t)' at /build/cmtk-3.3.1p1+dfsg/libs/IO/cmtkFileHeader.h:74:14, - inlined from 'void cmtk::FileHeader::StoreFieldString(size_t, const char*, size_t)' at /build/cmtk-3.3.1p1+dfsg/libs/IO/cmtkFileHeader.h:71:8, - inlined from 'int doMain(int, const char**)' at /build/cmtk-3.3.1p1+dfsg/apps/mk_analyze_hdr.cxx:275:28: -/usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' specified bound depends on the length of the source argument [-Wstringop-overflow=] - 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); - | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/cmtk-3.3.1p1+dfsg/apps/mk_analyze_hdr.cxx: In function 'int doMain(int, const char**)': -/build/cmtk-3.3.1p1+dfsg/apps/mk_analyze_hdr.cxx:275:72: note: length computed here - 275 | header.StoreFieldString( 148, Description, std::min( strlen( Description )+1, 80 ) ); - | ~~~~~~^~~~~~~~~~~~~~~ +In file included from /build/cmtk-3.3.1p1+dfsg/apps/average_affine.cxx:36: +/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); + | ^~~~~ make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' [ 89%] Built target mcwarp make -f apps/CMakeFiles/make_initial_affine.dir/build.make apps/CMakeFiles/make_initial_affine.dir/depend @@ -3773,87 +3813,69 @@ make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/make_initial_affine.dir/build.make apps/CMakeFiles/make_initial_affine.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +[ 89%] Building CXX object apps/CMakeFiles/make_initial_affine.dir/make_initial_affine.cxx.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/make_initial_affine.dir/make_initial_affine.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/make_initial_affine.cxx +[ 89%] Linking CXX executable ../bin/mk_analyze_hdr +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/mk_analyze_hdr.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/mk_analyze_hdr.dir/mk_analyze_hdr.cxx.o -o ../bin/mk_analyze_hdr -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +[ 89%] Linking CXX executable ../bin/split +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/split.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/split.dir/split.cxx.o -o ../bin/split -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +In file included from /build/cmtk-3.3.1p1+dfsg/apps/glm.cxx:37: +/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); + | ^~~~~ [ 90%] Linking CXX executable ../bin/concat_affine cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/concat_affine.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/concat_affine.dir/concat_affine.cxx.o -o ../bin/concat_affine -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -[ 90%] Building CXX object apps/CMakeFiles/make_initial_affine.dir/make_initial_affine.cxx.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/make_initial_affine.dir/make_initial_affine.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/make_initial_affine.cxx +[ 91%] Linking CXX executable ../bin/average_labels +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/average_labels.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/average_labels.dir/average_labels.cxx.o -o ../bin/average_labels -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 90%] Built target concat_affine +[ 91%] Built target mk_analyze_hdr make -f apps/CMakeFiles/convert_warp.dir/build.make apps/CMakeFiles/convert_warp.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/convert_warp.dir/DependInfo.cmake --color= -In file included from /build/cmtk-3.3.1p1+dfsg/apps/glm.cxx:37: -/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); - | ^~~~~ +make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/convert_warp.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/convert_warp.dir/depend.internal". Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/convert_warp.dir/depend.internal". -Scanning dependencies of target convert_warp -make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make -f apps/CMakeFiles/convert_warp.dir/build.make apps/CMakeFiles/convert_warp.dir/build -make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 90%] Building CXX object apps/CMakeFiles/convert_warp.dir/convert_warp.cxx.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/convert_warp.dir/convert_warp.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/convert_warp.cxx -[ 90%] Linking CXX executable ../bin/split -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/split.dir/link.txt --verbose=1 +[ 91%] Built target split In file included from /build/cmtk-3.3.1p1+dfsg/apps/make_initial_affine.cxx:36: /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); | ^~~~~ -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/split.dir/split.cxx.o -o ../bin/split -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -[ 90%] Linking CXX executable ../bin/vol2csv -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/vol2csv.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/vol2csv.dir/vol2csv.cxx.o -o ../bin/vol2csv -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 90%] Built target split make -f apps/CMakeFiles/destripe.dir/build.make apps/CMakeFiles/destripe.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/destripe.dir/DependInfo.cmake --color= -[ 90%] Built target vol2csv -make -f apps/CMakeFiles/imagemath.dir/build.make apps/CMakeFiles/imagemath.dir/depend +Scanning dependencies of target convert_warp +make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +make -f apps/CMakeFiles/convert_warp.dir/build.make apps/CMakeFiles/convert_warp.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/imagemath.dir/DependInfo.cmake --color= Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/destripe.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/destripe.dir/depend.internal". Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/destripe.dir/depend.internal". +[ 91%] Building CXX object apps/CMakeFiles/convert_warp.dir/convert_warp.cxx.o Scanning dependencies of target destripe make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/convert_warp.dir/convert_warp.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/convert_warp.cxx make -f apps/CMakeFiles/destripe.dir/build.make apps/CMakeFiles/destripe.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +[ 91%] Building CXX object apps/CMakeFiles/destripe.dir/destripe.cxx.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/destripe.dir/destripe.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/destripe.cxx +make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +[ 91%] Built target concat_affine +make -f apps/CMakeFiles/imagemath.dir/build.make apps/CMakeFiles/imagemath.dir/depend +make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/imagemath.dir/DependInfo.cmake --color= Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/imagemath.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/imagemath.dir/depend.internal". Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/imagemath.dir/depend.internal". -[ 90%] Building CXX object apps/CMakeFiles/destripe.dir/destripe.cxx.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/destripe.dir/destripe.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/destripe.cxx Scanning dependencies of target imagemath make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/imagemath.dir/build.make apps/CMakeFiles/imagemath.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 90%] Building CXX object apps/CMakeFiles/imagemath.dir/imagemath.cxx.o +[ 91%] Building CXX object apps/CMakeFiles/imagemath.dir/imagemath.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/imagemath.dir/imagemath.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/imagemath.cxx -In file included from /build/cmtk-3.3.1p1+dfsg/apps/convert_warp.cxx:35: -/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); - | ^~~~~ -[ 90%] Linking CXX executable ../bin/groupwise_init -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/groupwise_init.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/groupwise_init.dir/groupwise_init.cxx.o -o ../bin/groupwise_init -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -[ 91%] Linking CXX executable ../bin/average_labels -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/average_labels.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/average_labels.dir/average_labels.cxx.o -o ../bin/average_labels -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -In file included from /build/cmtk-3.3.1p1+dfsg/apps/destripe.cxx:33: -/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); - | ^~~~~ -In file included from /build/cmtk-3.3.1p1+dfsg/apps/imagemath.cxx:35: -/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); - | ^~~~~ -[ 91%] Linking CXX executable ../bin/mk_analyze_hdr -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/mk_analyze_hdr.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/mk_analyze_hdr.dir/mk_analyze_hdr.cxx.o -o ../bin/mk_analyze_hdr -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 91%] Built target groupwise_init +[ 91%] Built target average_labels make -f apps/CMakeFiles/similarity.dir/build.make apps/CMakeFiles/similarity.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/similarity.dir/DependInfo.cmake --color= @@ -3865,40 +3887,66 @@ make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' [ 91%] Building CXX object apps/CMakeFiles/similarity.dir/similarity.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/similarity.dir/similarity.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/similarity.cxx +In file included from /build/cmtk-3.3.1p1+dfsg/apps/convert_warp.cxx:35: +/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); + | ^~~~~ +In file included from /build/cmtk-3.3.1p1+dfsg/apps/destripe.cxx:33: +/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); + | ^~~~~ +[ 91%] Linking CXX executable ../bin/mk_adni_phantom +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/mk_adni_phantom.dir/link.txt --verbose=1 +In file included from /build/cmtk-3.3.1p1+dfsg/apps/similarity.cxx:35: +/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); + | ^~~~~ +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/mk_adni_phantom.dir/mk_adni_phantom.cxx.o -o ../bin/mk_adni_phantom -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +In file included from /build/cmtk-3.3.1p1+dfsg/apps/imagemath.cxx:35: +/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); + | ^~~~~ make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 91%] Built target average_labels +[ 91%] Built target mk_adni_phantom make -f apps/CMakeFiles/gregxform.dir/build.make apps/CMakeFiles/gregxform.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/gregxform.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/gregxform.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/gregxform.dir/depend.internal". Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/gregxform.dir/depend.internal". -[ 91%] Linking CXX executable ../bin/average_affine -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/average_affine.dir/link.txt --verbose=1 Scanning dependencies of target gregxform -[ 91%] Built target mk_analyze_hdr make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/gregxform.dir/build.make apps/CMakeFiles/gregxform.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +[ 91%] Building CXX object apps/CMakeFiles/gregxform.dir/gregxform.cxx.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/gregxform.dir/gregxform.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/gregxform.cxx +[ 91%] Linking CXX executable ../bin/avg_adm +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/avg_adm.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/avg_adm.dir/avg_adm.cxx.o -o ../bin/avg_adm -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +[ 91%] Linking CXX executable ../bin/groupwise_init +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/groupwise_init.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/groupwise_init.dir/groupwise_init.cxx.o -o ../bin/groupwise_init -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +[ 91%] Built target avg_adm make -f apps/CMakeFiles/dof2mat.dir/build.make apps/CMakeFiles/dof2mat.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/dof2mat.dir/DependInfo.cmake --color= -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/average_affine.dir/average_affine.cxx.o -o ../bin/average_affine -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/dof2mat.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/dof2mat.dir/depend.internal". Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/dof2mat.dir/depend.internal". -[ 91%] Building CXX object apps/CMakeFiles/gregxform.dir/gregxform.cxx.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/gregxform.dir/gregxform.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/gregxform.cxx Scanning dependencies of target dof2mat make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/dof2mat.dir/build.make apps/CMakeFiles/dof2mat.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' [ 91%] Building CXX object apps/CMakeFiles/dof2mat.dir/dof2mat.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/dof2mat.dir/dof2mat.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/dof2mat.cxx -[ 91%] Linking CXX executable ../bin/mk_adni_phantom -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/mk_adni_phantom.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/mk_adni_phantom.dir/mk_adni_phantom.cxx.o -o ../bin/mk_adni_phantom -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +[ 91%] Linking CXX executable ../bin/average_affine +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/average_affine.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/average_affine.dir/average_affine.cxx.o -o ../bin/average_affine -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +In file included from /build/cmtk-3.3.1p1+dfsg/apps/gregxform.cxx:35: +/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); + | ^~~~~ make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 91%] Built target average_affine +[ 91%] Built target groupwise_init make -f apps/CMakeFiles/levelset.dir/build.make apps/CMakeFiles/levelset.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/levelset.dir/DependInfo.cmake --color= @@ -3910,14 +3958,11 @@ make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' [ 91%] Building CXX object apps/CMakeFiles/levelset.dir/levelset.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/levelset.dir/levelset.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/levelset.cxx -[ 91%] Linking CXX executable ../bin/avg_adm make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/avg_adm.dir/link.txt --verbose=1 -[ 91%] Built target mk_adni_phantom +[ 91%] Built target average_affine make -f apps/CMakeFiles/fit_spline_dfield.dir/build.make apps/CMakeFiles/fit_spline_dfield.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/fit_spline_dfield.dir/DependInfo.cmake --color= -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/avg_adm.dir/avg_adm.cxx.o -o ../bin/avg_adm -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/fit_spline_dfield.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/fit_spline_dfield.dir/depend.internal". Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/fit_spline_dfield.dir/depend.internal". Scanning dependencies of target fit_spline_dfield @@ -3926,12 +3971,31 @@ make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' [ 91%] Building CXX object apps/CMakeFiles/fit_spline_dfield.dir/fit_spline_dfield.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/fit_spline_dfield.dir/fit_spline_dfield.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/fit_spline_dfield.cxx -In file included from /build/cmtk-3.3.1p1+dfsg/apps/similarity.cxx:35: +In file included from /build/cmtk-3.3.1p1+dfsg/libs/Segmentation/cmtkSimpleLevelsetCommandLineBase.h:40, + from /build/cmtk-3.3.1p1+dfsg/libs/Segmentation/cmtkSimpleLevelsetCommandLine.h:41, + from /build/cmtk-3.3.1p1+dfsg/apps/levelset.cxx:37: +/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); + | ^~~~~ +[ 91%] Linking CXX executable ../bin/make_initial_affine +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/make_initial_affine.dir/link.txt --verbose=1 +In file included from /build/cmtk-3.3.1p1+dfsg/apps/dof2mat.cxx:36: /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); | ^~~~~ +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/make_initial_affine.dir/make_initial_affine.cxx.o -o ../bin/make_initial_affine -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +/build/cmtk-3.3.1p1+dfsg/apps/gregxform.cxx: In function 'int doMain(int, const char**)': +/build/cmtk-3.3.1p1+dfsg/apps/gregxform.cxx:191:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 191 | fgets( line, 80, infile ); + | ~~~~~^~~~~~~~~~~~~~~~~~~~ +[ 91%] Linking CXX executable ../bin/sbai +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/sbai.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/sbai.dir/sbai.cxx.o -o ../bin/sbai -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +[ 91%] Linking CXX executable ../bin/groupwise_warp +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/groupwise_warp.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/groupwise_warp.dir/groupwise_warp.cxx.o -o ../bin/groupwise_warp -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 91%] Built target avg_adm +[ 91%] Built target make_initial_affine make -f apps/CMakeFiles/lsba.dir/build.make apps/CMakeFiles/lsba.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/lsba.dir/DependInfo.cmake --color= @@ -3943,76 +4007,54 @@ make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' [ 91%] Building CXX object apps/CMakeFiles/lsba.dir/lsba.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/lsba.dir/lsba.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/lsba.cxx -In file included from /build/cmtk-3.3.1p1+dfsg/apps/gregxform.cxx:35: -/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); - | ^~~~~ -[ 92%] Linking CXX executable ../bin/describe -In file included from /build/cmtk-3.3.1p1+dfsg/apps/dof2mat.cxx:36: +In file included from /build/cmtk-3.3.1p1+dfsg/apps/fit_spline_dfield.cxx:36: /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); | ^~~~~ -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/describe.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/describe.dir/describe.cxx.o -o ../bin/describe -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 92%] Built target describe -[ 92%] Linking CXX executable ../bin/sbai +[ 91%] Built target sbai make -f apps/CMakeFiles/interleaved_bad_slices.dir/build.make apps/CMakeFiles/interleaved_bad_slices.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/interleaved_bad_slices.dir/DependInfo.cmake --color= -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/sbai.dir/link.txt --verbose=1 -In file included from /build/cmtk-3.3.1p1+dfsg/apps/fit_spline_dfield.cxx:36: -/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); - | ^~~~~ -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/sbai.dir/sbai.cxx.o -o ../bin/sbai -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/interleaved_bad_slices.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/interleaved_bad_slices.dir/depend.internal". Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/interleaved_bad_slices.dir/depend.internal". Scanning dependencies of target interleaved_bad_slices make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/interleaved_bad_slices.dir/build.make apps/CMakeFiles/interleaved_bad_slices.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 93%] Building CXX object apps/CMakeFiles/interleaved_bad_slices.dir/interleaved_bad_slices.cxx.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/interleaved_bad_slices.dir/interleaved_bad_slices.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/interleaved_bad_slices.cxx -In file included from /build/cmtk-3.3.1p1+dfsg/libs/Segmentation/cmtkSimpleLevelsetCommandLineBase.h:40, - from /build/cmtk-3.3.1p1+dfsg/libs/Segmentation/cmtkSimpleLevelsetCommandLine.h:41, - from /build/cmtk-3.3.1p1+dfsg/apps/levelset.cxx:37: -/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); - | ^~~~~ -/build/cmtk-3.3.1p1+dfsg/apps/gregxform.cxx: In function 'int doMain(int, const char**)': -/build/cmtk-3.3.1p1+dfsg/apps/gregxform.cxx:191:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 191 | fgets( line, 80, infile ); - | ~~~~~^~~~~~~~~~~~~~~~~~~~ -In file included from /build/cmtk-3.3.1p1+dfsg/apps/lsba.cxx:35: -/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); - | ^~~~~ make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 93%] Built target sbai +[ 92%] Building CXX object apps/CMakeFiles/interleaved_bad_slices.dir/interleaved_bad_slices.cxx.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/interleaved_bad_slices.dir/interleaved_bad_slices.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/interleaved_bad_slices.cxx +[ 92%] Built target groupwise_warp make -f apps/CMakeFiles/lmsba.dir/build.make apps/CMakeFiles/lmsba.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/lmsba.dir/DependInfo.cmake --color= -[ 93%] Linking CXX executable ../bin/volume_injection -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/volume_injection.dir/link.txt --verbose=1 Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/lmsba.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/lmsba.dir/depend.internal". Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/lmsba.dir/depend.internal". -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/volume_injection.dir/volume_injection.cxx.o -o ../bin/volume_injection -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so Scanning dependencies of target lmsba make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/lmsba.dir/build.make apps/CMakeFiles/lmsba.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 93%] Linking CXX executable ../bin/convert_warp -[ 93%] Building CXX object apps/CMakeFiles/lmsba.dir/lmsba.cxx.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/convert_warp.dir/link.txt --verbose=1 +[ 92%] Building CXX object apps/CMakeFiles/lmsba.dir/lmsba.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/lmsba.dir/lmsba.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/lmsba.cxx -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/convert_warp.dir/convert_warp.cxx.o -o ../bin/convert_warp -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -In file included from /build/cmtk-3.3.1p1+dfsg/apps/interleaved_bad_slices.cxx:35: +[ 93%] Linking CXX executable ../bin/describe +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/describe.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/describe.dir/describe.cxx.o -o ../bin/describe -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +[ 94%] Linking CXX executable ../bin/levelset +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/levelset.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/levelset.dir/levelset.cxx.o -o ../bin/levelset -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +In file included from /build/cmtk-3.3.1p1+dfsg/apps/lsba.cxx:35: /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); | ^~~~~ +[ 94%] Linking CXX executable ../bin/convert_warp +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/convert_warp.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/convert_warp.dir/convert_warp.cxx.o -o ../bin/convert_warp -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +[ 94%] Linking CXX executable ../bin/volume_injection +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/volume_injection.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 93%] Built target convert_warp +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/volume_injection.dir/volume_injection.cxx.o -o ../bin/volume_injection -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +[ 94%] Built target describe make -f apps/CMakeFiles/statistics.dir/build.make apps/CMakeFiles/statistics.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/statistics.dir/DependInfo.cmake --color= @@ -4022,57 +4064,44 @@ make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/statistics.dir/build.make apps/CMakeFiles/statistics.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 94%] Building CXX object apps/CMakeFiles/statistics.dir/statistics.cxx.o +[ 95%] Building CXX object apps/CMakeFiles/statistics.dir/statistics.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/statistics.dir/statistics.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/statistics.cxx -[ 94%] Built target volume_injection -make -f apps/CMakeFiles/mk_phantom_3d.dir/build.make apps/CMakeFiles/mk_phantom_3d.dir/depend -make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/mk_phantom_3d.dir/DependInfo.cmake --color= -Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/mk_phantom_3d.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/mk_phantom_3d.dir/depend.internal". -Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/mk_phantom_3d.dir/depend.internal". -Scanning dependencies of target mk_phantom_3d -make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make -f apps/CMakeFiles/mk_phantom_3d.dir/build.make apps/CMakeFiles/mk_phantom_3d.dir/build -make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 94%] Building CXX object apps/CMakeFiles/mk_phantom_3d.dir/mk_phantom_3d.cxx.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/mk_phantom_3d.dir/mk_phantom_3d.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/mk_phantom_3d.cxx -[ 95%] Linking CXX executable ../bin/levelset -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/levelset.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/levelset.dir/levelset.cxx.o -o ../bin/levelset -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -[ 95%] Linking CXX executable ../bin/groupwise_warp -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/groupwise_warp.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/groupwise_warp.dir/groupwise_warp.cxx.o -o ../bin/groupwise_warp -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -In file included from /build/cmtk-3.3.1p1+dfsg/apps/lmsba.cxx:35: -/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); - | ^~~~~ -In file included from /build/cmtk-3.3.1p1+dfsg/apps/statistics.cxx:37: +In file included from /build/cmtk-3.3.1p1+dfsg/apps/interleaved_bad_slices.cxx:35: /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); | ^~~~~ make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' [ 95%] Built target levelset +make -f apps/CMakeFiles/mk_phantom_3d.dir/build.make apps/CMakeFiles/mk_phantom_3d.dir/depend +make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/mk_phantom_3d.dir/DependInfo.cmake --color= +[ 95%] Built target convert_warp make -f apps/CMakeFiles/mrbias.dir/build.make apps/CMakeFiles/mrbias.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/mrbias.dir/DependInfo.cmake --color= +Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/mk_phantom_3d.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/mk_phantom_3d.dir/depend.internal". +Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/mk_phantom_3d.dir/depend.internal". Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/mrbias.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/mrbias.dir/depend.internal". Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/mrbias.dir/depend.internal". +Scanning dependencies of target mk_phantom_3d +make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +make -f apps/CMakeFiles/mk_phantom_3d.dir/build.make apps/CMakeFiles/mk_phantom_3d.dir/build +make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' Scanning dependencies of target mrbias make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/mrbias.dir/build.make apps/CMakeFiles/mrbias.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' [ 95%] Building CXX object apps/CMakeFiles/mrbias.dir/mrbias.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/mrbias.dir/mrbias.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/mrbias.cxx -[ 95%] Linking CXX executable ../bin/make_initial_affine -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/make_initial_affine.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/make_initial_affine.dir/make_initial_affine.cxx.o -o ../bin/make_initial_affine -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -In file included from /build/cmtk-3.3.1p1+dfsg/apps/mk_phantom_3d.cxx:35: +[ 95%] Building CXX object apps/CMakeFiles/mk_phantom_3d.dir/mk_phantom_3d.cxx.o +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/mk_phantom_3d.dir/mk_phantom_3d.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/mk_phantom_3d.cxx +make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +In file included from /build/cmtk-3.3.1p1+dfsg/apps/lmsba.cxx:35: /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); | ^~~~~ -make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 95%] Built target groupwise_warp +[ 95%] Built target volume_injection make -f apps/CMakeFiles/convertx.dir/build.make apps/CMakeFiles/convertx.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/convertx.dir/DependInfo.cmake --color= @@ -4084,60 +4113,65 @@ make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' [ 95%] Building CXX object apps/CMakeFiles/convertx.dir/convertx.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/convertx.dir/convertx.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/convertx.cxx +In file included from /build/cmtk-3.3.1p1+dfsg/apps/statistics.cxx:37: +/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); + | ^~~~~ +[ 95%] Linking CXX executable ../bin/groupwise_affine +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/groupwise_affine.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/groupwise_affine.dir/groupwise_affine.cxx.o -o ../bin/groupwise_affine -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +[ 95%] Linking CXX executable ../bin/glm +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/glm.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/glm.dir/glm.cxx.o -o ../bin/glm -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +[ 95%] Linking CXX executable ../bin/destripe +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/destripe.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/destripe.dir/destripe.cxx.o -o ../bin/destripe -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +[ 95%] Linking CXX executable ../bin/dof2mat +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/dof2mat.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/dof2mat.dir/dof2mat.cxx.o -o ../bin/dof2mat -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +In file included from /build/cmtk-3.3.1p1+dfsg/apps/mrbias.cxx:35: +/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); + | ^~~~~ make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 95%] Built target make_initial_affine +In file included from /build/cmtk-3.3.1p1+dfsg/apps/mk_phantom_3d.cxx:35: +/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); + | ^~~~~ +[ 95%] Built target groupwise_affine make -f apps/CMakeFiles/overlap.dir/build.make apps/CMakeFiles/overlap.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/overlap.dir/DependInfo.cmake --color= +[ 95%] Linking CXX executable ../bin/similarity +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/similarity.dir/link.txt --verbose=1 Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/overlap.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/overlap.dir/depend.internal". Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/overlap.dir/depend.internal". +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/similarity.dir/similarity.cxx.o -o ../bin/similarity -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so Scanning dependencies of target overlap make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/overlap.dir/build.make apps/CMakeFiles/overlap.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 96%] Building CXX object apps/CMakeFiles/overlap.dir/overlap.cxx.o -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/overlap.dir/overlap.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/overlap.cxx -[ 96%] Linking CXX executable ../bin/destripe -/build/cmtk-3.3.1p1+dfsg/apps/mk_phantom_3d.cxx: In function 'int doMain(int, const char**)': -/build/cmtk-3.3.1p1+dfsg/apps/mk_phantom_3d.cxx:192:7: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 192 | std::auto_ptr fileformat( new DcmFileFormat ); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /build/cmtk-3.3.1p1+dfsg/apps/mk_phantom_3d.cxx:46: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/destripe.dir/link.txt --verbose=1 -[ 96%] Linking CXX executable ../bin/dof2mat -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/dof2mat.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/destripe.dir/destripe.cxx.o -o ../bin/destripe -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/dof2mat.dir/dof2mat.cxx.o -o ../bin/dof2mat -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -[ 96%] Linking CXX executable ../bin/groupwise_affine -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/groupwise_affine.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/groupwise_affine.dir/groupwise_affine.cxx.o -o ../bin/groupwise_affine -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -In file included from /build/cmtk-3.3.1p1+dfsg/apps/mrbias.cxx:35: +make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +In file included from /build/cmtk-3.3.1p1+dfsg/apps/convertx.cxx:35: /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); | ^~~~~ -make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 96%] Built target destripe +[ 95%] Built target glm +[ 96%] Building CXX object apps/CMakeFiles/overlap.dir/overlap.cxx.o make -f apps/CMakeFiles/filter.dir/build.make apps/CMakeFiles/filter.dir/depend +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/overlap.dir/overlap.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/overlap.cxx make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/filter.dir/DependInfo.cmake --color= -[ 96%] Built target dof2mat +make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +[ 96%] Built target destripe make -f apps/CMakeFiles/probe.dir/build.make apps/CMakeFiles/probe.dir/depend -make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/probe.dir/DependInfo.cmake --color= Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/filter.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/filter.dir/depend.internal". Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/filter.dir/depend.internal". -In file included from /build/cmtk-3.3.1p1+dfsg/apps/convertx.cxx:35: -/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); - | ^~~~~ +make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/probe.dir/DependInfo.cmake --color= +Scanning dependencies of target filter Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/probe.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/probe.dir/depend.internal". Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/probe.dir/depend.internal". -Scanning dependencies of target filter make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/filter.dir/build.make apps/CMakeFiles/filter.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' @@ -4150,7 +4184,7 @@ [ 96%] Building CXX object apps/CMakeFiles/probe.dir/probe.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/probe.dir/probe.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/probe.cxx make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 96%] Built target groupwise_affine +[ 96%] Built target dof2mat make -f apps/CMakeFiles/reformatx.dir/build.make apps/CMakeFiles/reformatx.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/reformatx.dir/DependInfo.cmake --color= @@ -4162,26 +4196,8 @@ make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' [ 97%] Building CXX object apps/CMakeFiles/reformatx.dir/reformatx.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/reformatx.dir/reformatx.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/reformatx.cxx -In file included from /build/cmtk-3.3.1p1+dfsg/apps/overlap.cxx:36: -/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); - | ^~~~~ -[ 97%] Linking CXX executable ../bin/glm -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/glm.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/glm.dir/glm.cxx.o -o ../bin/glm -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -[ 97%] Linking CXX executable ../bin/gregxform -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/gregxform.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/gregxform.dir/gregxform.cxx.o -o ../bin/gregxform -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -In file included from /build/cmtk-3.3.1p1+dfsg/apps/filter.cxx:36: -/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); - | ^~~~~ make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -In file included from /build/cmtk-3.3.1p1+dfsg/apps/probe.cxx:35: -/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); - | ^~~~~ -[ 97%] Built target glm +[ 97%] Built target similarity make -f apps/CMakeFiles/registration.dir/build.make apps/CMakeFiles/registration.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/registration.dir/DependInfo.cmake --color= @@ -4193,14 +4209,35 @@ make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' [ 97%] Building CXX object apps/CMakeFiles/registration.dir/registration.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/registration.dir/registration.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/registration.cxx -[ 97%] Linking CXX executable ../bin/similarity -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/similarity.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/similarity.dir/similarity.cxx.o -o ../bin/similarity -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +/build/cmtk-3.3.1p1+dfsg/apps/mk_phantom_3d.cxx: In function 'int doMain(int, const char**)': +/build/cmtk-3.3.1p1+dfsg/apps/mk_phantom_3d.cxx:192:7: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 192 | std::auto_ptr fileformat( new DcmFileFormat ); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /build/cmtk-3.3.1p1+dfsg/apps/mk_phantom_3d.cxx:46: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/cmtk-3.3.1p1+dfsg/apps/probe.cxx:35: +/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); + | ^~~~~ +In file included from /build/cmtk-3.3.1p1+dfsg/apps/overlap.cxx:36: +/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); + | ^~~~~ +[ 97%] Linking CXX executable ../bin/gregxform +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/gregxform.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/gregxform.dir/gregxform.cxx.o -o ../bin/gregxform -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +In file included from /build/cmtk-3.3.1p1+dfsg/apps/filter.cxx:36: +/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); + | ^~~~~ In file included from /build/cmtk-3.3.1p1+dfsg/apps/reformatx.cxx:37: /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); | ^~~~~ +make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' [ 97%] Built target gregxform make -f apps/CMakeFiles/sba.dir/build.make apps/CMakeFiles/sba.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' @@ -4213,25 +4250,39 @@ make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' [ 98%] Building CXX object apps/CMakeFiles/sba.dir/sba.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/sba.dir/sba.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/sba.cxx +In file included from /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkVoxelRegistration.h:52, + from /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkAffineRegistration.h:38, + from /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkAffineRegistrationCommandLine.h:38, + from /build/cmtk-3.3.1p1+dfsg/apps/registration.cxx:40: +/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); + | ^~~~~ +In file included from /build/cmtk-3.3.1p1+dfsg/apps/sba.cxx:37: +/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); + | ^~~~~ +[ 98%] Linking CXX executable ../bin/registration +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/registration.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/registration.dir/registration.cxx.o -o ../bin/registration -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +[ 98%] Linking CXX executable ../bin/fit_spline_dfield +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/fit_spline_dfield.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/fit_spline_dfield.dir/fit_spline_dfield.cxx.o -o ../bin/fit_spline_dfield -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 98%] Built target similarity +[ 98%] Built target registration make -f apps/CMakeFiles/mcaffine.dir/build.make apps/CMakeFiles/mcaffine.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/mcaffine.dir/DependInfo.cmake --color= Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/mcaffine.dir/DependInfo.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/mcaffine.dir/depend.internal". Dependee "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/mcaffine.dir/depend.internal". -[ 98%] Linking CXX executable ../bin/fit_spline_dfield +[ 98%] Linking CXX executable ../bin/lsba +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/lsba.dir/link.txt --verbose=1 Scanning dependencies of target mcaffine -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/fit_spline_dfield.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/mcaffine.dir/build.make apps/CMakeFiles/mcaffine.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/fit_spline_dfield.dir/fit_spline_dfield.cxx.o -o ../bin/fit_spline_dfield -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/lsba.dir/lsba.cxx.o -o ../bin/lsba -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so [ 98%] Building CXX object apps/CMakeFiles/mcaffine.dir/mcaffine.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/mcaffine.dir/mcaffine.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/mcaffine.cxx -[ 98%] Linking CXX executable ../bin/lsba -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/lsba.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/lsba.dir/lsba.cxx.o -o ../bin/lsba -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' [ 98%] Built target fit_spline_dfield make -f apps/CMakeFiles/sequence.dir/build.make apps/CMakeFiles/sequence.dir/depend @@ -4245,92 +4296,76 @@ make[3]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' [ 98%] Building CXX object apps/CMakeFiles/sequence.dir/sequence.cxx.o cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p1+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p1+dfsg/libs -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -o CMakeFiles/sequence.dir/sequence.cxx.o -c /build/cmtk-3.3.1p1+dfsg/apps/sequence.cxx -In file included from /build/cmtk-3.3.1p1+dfsg/apps/sba.cxx:37: -/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); - | ^~~~~ make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' [ 98%] Built target lsba -In file included from /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkVoxelRegistration.h:52, - from /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkAffineRegistration.h:38, - from /build/cmtk-3.3.1p1+dfsg/libs/Registration/cmtkAffineRegistrationCommandLine.h:38, - from /build/cmtk-3.3.1p1+dfsg/apps/registration.cxx:40: -/build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); - | ^~~~~ +[ 98%] Linking CXX executable ../bin/lmsba +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/lmsba.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/lmsba.dir/lmsba.cxx.o -o ../bin/lmsba -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so In file included from /build/cmtk-3.3.1p1+dfsg/apps/mcaffine.cxx:37: /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); | ^~~~~ +[ 98%] Linking CXX executable ../bin/imagemath +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/imagemath.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/imagemath.dir/imagemath.cxx.o -o ../bin/imagemath -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so In file included from /build/cmtk-3.3.1p1+dfsg/apps/sequence.cxx:35: /build/cmtk-3.3.1p1+dfsg/libs/System/cmtkCommandLine.h:1178:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 1178 | bool Parse( const int argc, const char* argv[] ) throw( ExitException, Self::Exception ); | ^~~~~ -[ 98%] Linking CXX executable ../bin/interleaved_bad_slices -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/interleaved_bad_slices.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/interleaved_bad_slices.dir/interleaved_bad_slices.cxx.o -o ../bin/interleaved_bad_slices -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -[ 98%] Linking CXX executable ../bin/registration -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/registration.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/registration.dir/registration.cxx.o -o ../bin/registration -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 98%] Built target interleaved_bad_slices make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 98%] Built target registration -[ 98%] Linking CXX executable ../bin/imagemath -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/imagemath.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/imagemath.dir/imagemath.cxx.o -o ../bin/imagemath -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -[ 98%] Linking CXX executable ../bin/lmsba -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/lmsba.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/lmsba.dir/lmsba.cxx.o -o ../bin/lmsba -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -[ 98%] Linking CXX executable ../bin/mk_phantom_3d -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/mk_phantom_3d.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/mk_phantom_3d.dir/mk_phantom_3d.cxx.o -o ../bin/mk_phantom_3d -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +[ 98%] Built target lmsba make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' [ 98%] Built target imagemath -make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 98%] Built target lmsba +[ 98%] Linking CXX executable ../bin/interleaved_bad_slices +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/interleaved_bad_slices.dir/link.txt --verbose=1 [ 99%] Linking CXX executable ../bin/filter cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/filter.dir/link.txt --verbose=1 -make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/interleaved_bad_slices.dir/interleaved_bad_slices.cxx.o -o ../bin/interleaved_bad_slices -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/filter.dir/filter.cxx.o -o ../bin/filter -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -[ 99%] Built target mk_phantom_3d [ 99%] Linking CXX executable ../bin/statistics cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/statistics.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/statistics.dir/statistics.cxx.o -o ../bin/statistics -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' [ 99%] Built target filter +[ 99%] Built target interleaved_bad_slices +make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' [ 99%] Linking CXX executable ../bin/overlap +[ 99%] Built target statistics cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/overlap.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/overlap.dir/overlap.cxx.o -o ../bin/overlap -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 99%] Built target statistics +[ 99%] Linking CXX executable ../bin/mk_phantom_3d +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/mk_phantom_3d.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/mk_phantom_3d.dir/mk_phantom_3d.cxx.o -o ../bin/mk_phantom_3d -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' [ 99%] Built target overlap +make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +[ 99%] Built target mk_phantom_3d [ 99%] Linking CXX executable ../bin/sba cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/sba.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/sba.dir/sba.cxx.o -o ../bin/sba -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +[ 99%] Linking CXX executable ../bin/convertx +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/convertx.dir/link.txt --verbose=1 +make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/convertx.dir/convertx.cxx.o -o ../bin/convertx -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +[ 99%] Built target sba [100%] Linking CXX executable ../bin/sequence cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/sequence.dir/link.txt --verbose=1 -[100%] Linking CXX executable ../bin/mrbias -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/mrbias.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/sequence.dir/sequence.cxx.o -o ../bin/sequence -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/mrbias.dir/mrbias.cxx.o -o ../bin/mrbias -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[100%] Built target sba make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +[100%] Built target convertx [100%] Built target sequence +[100%] Linking CXX executable ../bin/mrbias +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/mrbias.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/mrbias.dir/mrbias.cxx.o -o ../bin/mrbias -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so [100%] Linking CXX executable ../bin/probe cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/probe.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/probe.dir/probe.cxx.o -o ../bin/probe -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[100%] Built target probe [100%] Built target mrbias -[100%] Linking CXX executable ../bin/convertx -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/convertx.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/convertx.dir/convertx.cxx.o -o ../bin/convertx -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[100%] Built target convertx +[100%] Built target probe [100%] Linking CXX executable ../bin/reformatx cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/reformatx.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/cmtk-3.3.1p1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/reformatx.dir/reformatx.cxx.o -o ../bin/reformatx -L/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so -lpthread ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so @@ -4349,10 +4384,10 @@ make[1]: Entering directory '/build/cmtk-3.3.1p1+dfsg' ARGS=--verbose xvfb-run --auto-servernum --server-num=20 \ dh_auto_test - cd obj-x86_64-linux-gnu && make -j16 test ARGS\+=-j16 + cd obj-x86_64-linux-gnu && make -j15 test ARGS\+=-j15 make[2]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' Running tests... -/usr/bin/ctest --force-new-ctest-process --auto-servernum --server-num '20' -- 'dh_auto_test' -j16 +/usr/bin/ctest --force-new-ctest-process --auto-servernum --server-num '20' -- 'dh_auto_test' -j15 Test project /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu No tests were found!!! make[2]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' @@ -4372,7 +4407,7 @@ debian/rules override_dh_auto_install make[1]: Entering directory '/build/cmtk-3.3.1p1+dfsg' dh_auto_install - cd obj-x86_64-linux-gnu && make -j16 install DESTDIR=/build/cmtk-3.3.1p1\+dfsg/debian/cmtk AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-x86_64-linux-gnu && make -j15 install DESTDIR=/build/cmtk-3.3.1p1\+dfsg/debian/cmtk AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/cmtk-3.3.1p1+dfsg -B/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/CMakeFiles /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu//CMakeFiles/progress.marks @@ -4388,26 +4423,26 @@ make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/libs/Numerics /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Numerics /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Numerics/CMakeFiles/cmtkNumerics.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +make -f Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/build.make Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/build +make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f Utilities/mxml/CMakeFiles/cmtkMxml.dir/build.make Utilities/mxml/CMakeFiles/cmtkMxml.dir/build +make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +make -f libs/Numerics/CMakeFiles/cmtkNumerics.dir/build.make libs/Numerics/CMakeFiles/cmtkNumerics.dir/build +make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +make[4]: Nothing to be done for 'Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/build'. +make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +[ 8%] Built target NrrdIO make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'Utilities/mxml/CMakeFiles/cmtkMxml.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 2%] Built target cmtkMxml +[ 10%] Built target cmtkMxml make -f libs/System/CMakeFiles/cmtkSystem.dir/build.make libs/System/CMakeFiles/cmtkSystem.dir/depend make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/libs/System /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/System /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/System/CMakeFiles/cmtkSystem.dir/DependInfo.cmake --color= -make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make -f libs/Numerics/CMakeFiles/cmtkNumerics.dir/build.make libs/Numerics/CMakeFiles/cmtkNumerics.dir/build -make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make -f Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/build.make Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/build make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'libs/Numerics/CMakeFiles/cmtkNumerics.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/build'. -make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 8%] Built target cmtkNumerics -[ 16%] Built target NrrdIO +[ 16%] Built target cmtkNumerics make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f libs/System/CMakeFiles/cmtkSystem.dir/build.make libs/System/CMakeFiles/cmtkSystem.dir/build make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' @@ -4449,11 +4484,11 @@ cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/libs/Segmentation /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Segmentation /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f libs/Recon/CMakeFiles/cmtkRecon.dir/build.make libs/Recon/CMakeFiles/cmtkRecon.dir/build -make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make -f libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/build.make libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/build make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'libs/Recon/CMakeFiles/cmtkRecon.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +make -f libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/build.make libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/build [ 63%] Built target cmtkRecon make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/build'. @@ -4474,7 +4509,6 @@ make -f apps/CMakeFiles/unwarp_image_phantom.dir/build.make apps/CMakeFiles/unwarp_image_phantom.dir/depend make -f apps/CMakeFiles/unsplit.dir/build.make apps/CMakeFiles/unsplit.dir/depend make -f apps/CMakeFiles/ttest.dir/build.make apps/CMakeFiles/ttest.dir/depend -make -f apps/CMakeFiles/symplx.dir/build.make apps/CMakeFiles/symplx.dir/depend make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/detect_adni_phantom.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' @@ -4505,28 +4539,24 @@ cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/unsplit.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/ttest.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/symplx.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/dcm2image.dir/build.make apps/CMakeFiles/dcm2image.dir/build make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/detect_spheres_matched_filter.dir/build.make apps/CMakeFiles/detect_spheres_matched_filter.dir/build make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make -f apps/CMakeFiles/detect_adni_phantom.dir/build.make apps/CMakeFiles/detect_adni_phantom.dir/build make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +make -f apps/CMakeFiles/detect_adni_phantom.dir/build.make apps/CMakeFiles/detect_adni_phantom.dir/build make -f apps/CMakeFiles/unsplit.dir/build.make apps/CMakeFiles/unsplit.dir/build make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/xform2itk.dir/build.make apps/CMakeFiles/xform2itk.dir/build make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make -f apps/CMakeFiles/ttest.dir/build.make apps/CMakeFiles/ttest.dir/build -make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +make -f apps/CMakeFiles/warp2ps.dir/build.make apps/CMakeFiles/warp2ps.dir/build make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/asegment_sri24.dir/build.make apps/CMakeFiles/asegment_sri24.dir/build -make -f apps/CMakeFiles/warp2ps.dir/build.make apps/CMakeFiles/warp2ps.dir/build make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make -f apps/CMakeFiles/vtkxform.dir/build.make apps/CMakeFiles/vtkxform.dir/build +make -f apps/CMakeFiles/ttest.dir/build.make apps/CMakeFiles/ttest.dir/build make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make -f apps/CMakeFiles/symplx.dir/build.make apps/CMakeFiles/symplx.dir/build +make -f apps/CMakeFiles/vtkxform.dir/build.make apps/CMakeFiles/vtkxform.dir/build make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/xform2scalar.dir/build.make apps/CMakeFiles/xform2scalar.dir/build make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' @@ -4543,669 +4573,674 @@ make[4]: Nothing to be done for 'apps/CMakeFiles/dcm2image.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'apps/CMakeFiles/unsplit.dir/build'. -make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'apps/CMakeFiles/detect_spheres_matched_filter.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'apps/CMakeFiles/detect_adni_phantom.dir/build'. +make[4]: Nothing to be done for 'apps/CMakeFiles/unsplit.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 67%] Built target dcm2image -make -f apps/CMakeFiles/sympl.dir/build.make apps/CMakeFiles/sympl.dir/depend make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'apps/CMakeFiles/xform2itk.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 67%] Built target unsplit +make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +make[4]: Nothing to be done for 'apps/CMakeFiles/detect_adni_phantom.dir/build'. +make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'apps/CMakeFiles/ttest.dir/build'. -make -f apps/CMakeFiles/streamxform.dir/build.make apps/CMakeFiles/streamxform.dir/depend make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 68%] Built target detect_spheres_matched_filter -make -f apps/CMakeFiles/gmm.dir/build.make apps/CMakeFiles/gmm.dir/depend make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'apps/CMakeFiles/warp2ps.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'apps/CMakeFiles/asegment_sri24.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 68%] Built target detect_adni_phantom -make -f apps/CMakeFiles/jidb.dir/build.make apps/CMakeFiles/jidb.dir/depend -make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/sympl.dir/DependInfo.cmake --color= -[ 68%] Built target xform2itk -make -f apps/CMakeFiles/geomatch.dir/build.make apps/CMakeFiles/geomatch.dir/depend +[ 67%] Built target dcm2image +make -f apps/CMakeFiles/symplx.dir/build.make apps/CMakeFiles/symplx.dir/depend make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'apps/CMakeFiles/vtkxform.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'apps/CMakeFiles/symplx.dir/build'. -make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +[ 68%] Built target detect_spheres_matched_filter +make -f apps/CMakeFiles/sympl.dir/build.make apps/CMakeFiles/sympl.dir/depend +[ 68%] Built target unsplit +make -f apps/CMakeFiles/streamxform.dir/build.make apps/CMakeFiles/streamxform.dir/depend +[ 68%] Built target xform2itk +make -f apps/CMakeFiles/gmm.dir/build.make apps/CMakeFiles/gmm.dir/depend +[ 68%] Built target detect_adni_phantom +make -f apps/CMakeFiles/jidb.dir/build.make apps/CMakeFiles/jidb.dir/depend [ 69%] Built target ttest +make -f apps/CMakeFiles/geomatch.dir/build.make apps/CMakeFiles/geomatch.dir/depend +[ 69%] Built target warp2ps make -f apps/CMakeFiles/dbtool.dir/build.make apps/CMakeFiles/dbtool.dir/depend make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/streamxform.dir/DependInfo.cmake --color= -[ 69%] Built target warp2ps +make[4]: Nothing to be done for 'apps/CMakeFiles/xform2scalar.dir/build'. +make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +[ 69%] Built target asegment_sri24 make -f apps/CMakeFiles/fit_spline_xform.dir/build.make apps/CMakeFiles/fit_spline_xform.dir/depend make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/gmm.dir/DependInfo.cmake --color= +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/symplx.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'apps/CMakeFiles/xform2scalar.dir/build'. +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/sympl.dir/DependInfo.cmake --color= +make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +make[4]: Nothing to be done for 'apps/CMakeFiles/xform2dfield.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 69%] Built target asegment_sri24 +make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/streamxform.dir/DependInfo.cmake --color= +[ 69%] Built target vtkxform make -f apps/CMakeFiles/reorient.dir/build.make apps/CMakeFiles/reorient.dir/depend make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/gmm.dir/DependInfo.cmake --color= +make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/jidb.dir/DependInfo.cmake --color= -[ 69%] Built target vtkxform -make -f apps/CMakeFiles/film.dir/build.make apps/CMakeFiles/film.dir/depend +make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/dbtool.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/geomatch.dir/DependInfo.cmake --color= -[ 69%] Built target symplx -make -f apps/CMakeFiles/fib2image.dir/build.make apps/CMakeFiles/fib2image.dir/depend make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'apps/CMakeFiles/xform2dfield.dir/build'. +make[4]: Nothing to be done for 'apps/CMakeFiles/unwarp_image_phantom.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/dbtool.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/fit_spline_xform.dir/DependInfo.cmake --color= [ 70%] Built target xform2scalar -make -f apps/CMakeFiles/fit_affine_xform_landmarks.dir/build.make apps/CMakeFiles/fit_affine_xform_landmarks.dir/depend +make -f apps/CMakeFiles/film.dir/build.make apps/CMakeFiles/film.dir/depend +[ 71%] Built target xform2dfield +make -f apps/CMakeFiles/fib2image.dir/build.make apps/CMakeFiles/fib2image.dir/depend make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/reorient.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'apps/CMakeFiles/unwarp_image_phantom.dir/build'. -make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +[ 72%] Built target unwarp_image_phantom +make -f apps/CMakeFiles/fit_affine_xform_landmarks.dir/build.make apps/CMakeFiles/fit_affine_xform_landmarks.dir/depend make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/film.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/fib2image.dir/DependInfo.cmake --color= -[ 71%] Built target xform2dfield -make -f apps/CMakeFiles/fibxform.dir/build.make apps/CMakeFiles/fibxform.dir/depend -make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/fit_affine_xform_landmarks.dir/DependInfo.cmake --color= -[ 72%] Built target unwarp_image_phantom -make -f apps/CMakeFiles/epiunwarp.dir/build.make apps/CMakeFiles/epiunwarp.dir/depend -make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/fibxform.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'apps/CMakeFiles/warp.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/epiunwarp.dir/DependInfo.cmake --color= +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/fit_affine_xform_landmarks.dir/DependInfo.cmake --color= [ 73%] Built target warp -make -f apps/CMakeFiles/hausdorff.dir/build.make apps/CMakeFiles/hausdorff.dir/depend +make -f apps/CMakeFiles/fibxform.dir/build.make apps/CMakeFiles/fibxform.dir/depend make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/hausdorff.dir/DependInfo.cmake --color= -make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make -f apps/CMakeFiles/dbtool.dir/build.make apps/CMakeFiles/dbtool.dir/build +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/fibxform.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'apps/CMakeFiles/volume_reconstruction.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +make -f apps/CMakeFiles/dbtool.dir/build.make apps/CMakeFiles/dbtool.dir/build [ 74%] Built target volume_reconstruction -make -f apps/CMakeFiles/mat2dof.dir/build.make apps/CMakeFiles/mat2dof.dir/depend +make -f apps/CMakeFiles/epiunwarp.dir/build.make apps/CMakeFiles/epiunwarp.dir/depend make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/mat2dof.dir/DependInfo.cmake --color= +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/epiunwarp.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'apps/CMakeFiles/mcwarp.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/gmm.dir/build.make apps/CMakeFiles/gmm.dir/build make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make -f apps/CMakeFiles/fit_affine_xform_landmarks.dir/build.make apps/CMakeFiles/fit_affine_xform_landmarks.dir/build +make -f apps/CMakeFiles/geomatch.dir/build.make apps/CMakeFiles/geomatch.dir/build [ 74%] Built target mcwarp -make -f apps/CMakeFiles/regress.dir/build.make apps/CMakeFiles/regress.dir/depend +make -f apps/CMakeFiles/hausdorff.dir/build.make apps/CMakeFiles/hausdorff.dir/depend make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make -f apps/CMakeFiles/geomatch.dir/build.make apps/CMakeFiles/geomatch.dir/build +make -f apps/CMakeFiles/symplx.dir/build.make apps/CMakeFiles/symplx.dir/build make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/streamxform.dir/build.make apps/CMakeFiles/streamxform.dir/build make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +make -f apps/CMakeFiles/fit_affine_xform_landmarks.dir/build.make apps/CMakeFiles/fit_affine_xform_landmarks.dir/build +make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/reorient.dir/build.make apps/CMakeFiles/reorient.dir/build make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/regress.dir/DependInfo.cmake --color= +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/hausdorff.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'apps/CMakeFiles/dbtool.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make -f apps/CMakeFiles/fib2image.dir/build.make apps/CMakeFiles/fib2image.dir/build -make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/fit_spline_xform.dir/build.make apps/CMakeFiles/fit_spline_xform.dir/build [ 75%] Built target dbtool -make -f apps/CMakeFiles/dwi_mask_bad_slices.dir/build.make apps/CMakeFiles/dwi_mask_bad_slices.dir/depend -make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make -f apps/CMakeFiles/fibxform.dir/build.make apps/CMakeFiles/fibxform.dir/build +make -f apps/CMakeFiles/mat2dof.dir/build.make apps/CMakeFiles/mat2dof.dir/depend make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make -f apps/CMakeFiles/epiunwarp.dir/build.make apps/CMakeFiles/epiunwarp.dir/build +make -f apps/CMakeFiles/fib2image.dir/build.make apps/CMakeFiles/fib2image.dir/build make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/dwi_mask_bad_slices.dir/DependInfo.cmake --color= +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/mat2dof.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/jidb.dir/build.make apps/CMakeFiles/jidb.dir/build make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make -f apps/CMakeFiles/hausdorff.dir/build.make apps/CMakeFiles/hausdorff.dir/build -make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/sympl.dir/build.make apps/CMakeFiles/sympl.dir/build make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +make -f apps/CMakeFiles/fibxform.dir/build.make apps/CMakeFiles/fibxform.dir/build +make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/film.dir/build.make apps/CMakeFiles/film.dir/build make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make -f apps/CMakeFiles/mat2dof.dir/build.make apps/CMakeFiles/mat2dof.dir/build +make -f apps/CMakeFiles/epiunwarp.dir/build.make apps/CMakeFiles/epiunwarp.dir/build +make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +make -f apps/CMakeFiles/hausdorff.dir/build.make apps/CMakeFiles/hausdorff.dir/build make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'apps/CMakeFiles/fit_affine_xform_landmarks.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make -f apps/CMakeFiles/regress.dir/build.make apps/CMakeFiles/regress.dir/build -[ 76%] Built target fit_affine_xform_landmarks -make -f apps/CMakeFiles/histogram.dir/build.make apps/CMakeFiles/histogram.dir/depend make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'apps/CMakeFiles/gmm.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/histogram.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'apps/CMakeFiles/geomatch.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +[ 76%] Built target fit_affine_xform_landmarks +make -f apps/CMakeFiles/regress.dir/build.make apps/CMakeFiles/regress.dir/depend [ 77%] Built target gmm -make -f apps/CMakeFiles/stream_pixels.dir/build.make apps/CMakeFiles/stream_pixels.dir/depend -make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make -f apps/CMakeFiles/dwi_mask_bad_slices.dir/build.make apps/CMakeFiles/dwi_mask_bad_slices.dir/build +make -f apps/CMakeFiles/dwi_mask_bad_slices.dir/build.make apps/CMakeFiles/dwi_mask_bad_slices.dir/depend +[ 78%] Built target geomatch +make -f apps/CMakeFiles/histogram.dir/build.make apps/CMakeFiles/histogram.dir/depend make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'apps/CMakeFiles/reorient.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 78%] Built target geomatch -make -f apps/CMakeFiles/average_images.dir/build.make apps/CMakeFiles/average_images.dir/depend +make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +make[4]: Nothing to be done for 'apps/CMakeFiles/symplx.dir/build'. +make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'apps/CMakeFiles/streamxform.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/stream_pixels.dir/DependInfo.cmake --color= +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/regress.dir/DependInfo.cmake --color= +make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/dwi_mask_bad_slices.dir/DependInfo.cmake --color= +make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/histogram.dir/DependInfo.cmake --color= +make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +make -f apps/CMakeFiles/mat2dof.dir/build.make apps/CMakeFiles/mat2dof.dir/build [ 78%] Built target reorient -make -f apps/CMakeFiles/fit_affine_dfield.dir/build.make apps/CMakeFiles/fit_affine_dfield.dir/depend +make -f apps/CMakeFiles/stream_pixels.dir/build.make apps/CMakeFiles/stream_pixels.dir/depend +[ 78%] Built target symplx +make -f apps/CMakeFiles/average_images.dir/build.make apps/CMakeFiles/average_images.dir/depend [ 79%] Built target streamxform -make -f apps/CMakeFiles/asegment.dir/build.make apps/CMakeFiles/asegment.dir/depend +make -f apps/CMakeFiles/fit_affine_dfield.dir/build.make apps/CMakeFiles/fit_affine_dfield.dir/depend make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/average_images.dir/DependInfo.cmake --color= +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/stream_pixels.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/fit_affine_dfield.dir/DependInfo.cmake --color= +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/average_images.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'apps/CMakeFiles/fib2image.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/asegment.dir/DependInfo.cmake --color= +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/fit_affine_dfield.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'apps/CMakeFiles/epiunwarp.dir/build'. +make[4]: Nothing to be done for 'apps/CMakeFiles/fit_spline_xform.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' [ 79%] Built target fib2image +make -f apps/CMakeFiles/asegment.dir/build.make apps/CMakeFiles/asegment.dir/depend +[ 79%] Built target fit_spline_xform make -f apps/CMakeFiles/pxsearch.dir/build.make apps/CMakeFiles/pxsearch.dir/depend make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'apps/CMakeFiles/fibxform.dir/build'. -make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/asegment.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'apps/CMakeFiles/fit_spline_xform.dir/build'. -make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/pxsearch.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'apps/CMakeFiles/hausdorff.dir/build'. +make[4]: Nothing to be done for 'apps/CMakeFiles/fibxform.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 79%] Built target epiunwarp +[ 80%] Built target fibxform make -f apps/CMakeFiles/fit_affine_xform.dir/build.make apps/CMakeFiles/fit_affine_xform.dir/depend make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/pxsearch.dir/DependInfo.cmake --color= -[ 80%] Built target fibxform -make -f apps/CMakeFiles/lvote.dir/build.make apps/CMakeFiles/lvote.dir/depend -[ 80%] Built target fit_spline_xform -make -f apps/CMakeFiles/mk_nifti_hdr.dir/build.make apps/CMakeFiles/mk_nifti_hdr.dir/depend -[ 81%] Built target hausdorff -make -f apps/CMakeFiles/vol2csv.dir/build.make apps/CMakeFiles/vol2csv.dir/depend +make[4]: Nothing to be done for 'apps/CMakeFiles/jidb.dir/build'. +make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/fit_affine_xform.dir/DependInfo.cmake --color= +[ 80%] Built target jidb +make -f apps/CMakeFiles/lvote.dir/build.make apps/CMakeFiles/lvote.dir/depend make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/lvote.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/mk_nifti_hdr.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/vol2csv.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'apps/CMakeFiles/jidb.dir/build'. +make[4]: Nothing to be done for 'apps/CMakeFiles/epiunwarp.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 81%] Built target jidb -make -f apps/CMakeFiles/groupwise_warp.dir/build.make apps/CMakeFiles/groupwise_warp.dir/depend make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/groupwise_warp.dir/DependInfo.cmake --color= +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/lvote.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'apps/CMakeFiles/film.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 81%] Built target film -make -f apps/CMakeFiles/split.dir/build.make apps/CMakeFiles/split.dir/depend +[ 80%] Built target epiunwarp +make -f apps/CMakeFiles/mk_nifti_hdr.dir/build.make apps/CMakeFiles/mk_nifti_hdr.dir/depend +[ 80%] Built target film +make -f apps/CMakeFiles/vol2csv.dir/build.make apps/CMakeFiles/vol2csv.dir/depend make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'apps/CMakeFiles/sympl.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/split.dir/DependInfo.cmake --color= -[ 81%] Built target sympl -make -f apps/CMakeFiles/avg_adm.dir/build.make apps/CMakeFiles/avg_adm.dir/depend +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/mk_nifti_hdr.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'apps/CMakeFiles/mat2dof.dir/build'. -make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 82%] Built target mat2dof -make -f apps/CMakeFiles/registrationx.dir/build.make apps/CMakeFiles/registrationx.dir/depend +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/vol2csv.dir/DependInfo.cmake --color= +[ 80%] Built target sympl +make -f apps/CMakeFiles/groupwise_warp.dir/build.make apps/CMakeFiles/groupwise_warp.dir/depend make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/avg_adm.dir/DependInfo.cmake --color= +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/groupwise_warp.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/registrationx.dir/DependInfo.cmake --color= +make[4]: Nothing to be done for 'apps/CMakeFiles/hausdorff.dir/build'. +make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/histogram.dir/build.make apps/CMakeFiles/histogram.dir/build make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make -f apps/CMakeFiles/stream_pixels.dir/build.make apps/CMakeFiles/stream_pixels.dir/build -make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'apps/CMakeFiles/regress.dir/build'. +make -f apps/CMakeFiles/dwi_mask_bad_slices.dir/build.make apps/CMakeFiles/dwi_mask_bad_slices.dir/build make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +make -f apps/CMakeFiles/regress.dir/build.make apps/CMakeFiles/regress.dir/build +[ 81%] Built target hausdorff +make -f apps/CMakeFiles/split.dir/build.make apps/CMakeFiles/split.dir/depend make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make -f apps/CMakeFiles/average_images.dir/build.make apps/CMakeFiles/average_images.dir/build +make -f apps/CMakeFiles/stream_pixels.dir/build.make apps/CMakeFiles/stream_pixels.dir/build make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/fit_affine_dfield.dir/build.make apps/CMakeFiles/fit_affine_dfield.dir/build -[ 82%] Built target regress -make -f apps/CMakeFiles/groupwise_affine.dir/build.make apps/CMakeFiles/groupwise_affine.dir/depend +make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/split.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make -f apps/CMakeFiles/asegment.dir/build.make apps/CMakeFiles/asegment.dir/build +make -f apps/CMakeFiles/average_images.dir/build.make apps/CMakeFiles/average_images.dir/build +make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +make -f apps/CMakeFiles/pxsearch.dir/build.make apps/CMakeFiles/pxsearch.dir/build make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'apps/CMakeFiles/dwi_mask_bad_slices.dir/build'. +make[4]: Nothing to be done for 'apps/CMakeFiles/mat2dof.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +make -f apps/CMakeFiles/asegment.dir/build.make apps/CMakeFiles/asegment.dir/build +[ 82%] Built target mat2dof +make -f apps/CMakeFiles/avg_adm.dir/build.make apps/CMakeFiles/avg_adm.dir/depend make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/groupwise_affine.dir/DependInfo.cmake --color= +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/avg_adm.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/mk_nifti_hdr.dir/build.make apps/CMakeFiles/mk_nifti_hdr.dir/build make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make -f apps/CMakeFiles/pxsearch.dir/build.make apps/CMakeFiles/pxsearch.dir/build -[ 83%] Built target dwi_mask_bad_slices -make -f apps/CMakeFiles/mk_analyze_hdr.dir/build.make apps/CMakeFiles/mk_analyze_hdr.dir/depend +make -f apps/CMakeFiles/fit_affine_xform.dir/build.make apps/CMakeFiles/fit_affine_xform.dir/build make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/lvote.dir/build.make apps/CMakeFiles/lvote.dir/build -make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/mk_analyze_hdr.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/vol2csv.dir/build.make apps/CMakeFiles/vol2csv.dir/build +make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +make[4]: Nothing to be done for 'apps/CMakeFiles/histogram.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make -f apps/CMakeFiles/fit_affine_xform.dir/build.make apps/CMakeFiles/fit_affine_xform.dir/build +make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +make[4]: Nothing to be done for 'apps/CMakeFiles/dwi_mask_bad_slices.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make -f apps/CMakeFiles/split.dir/build.make apps/CMakeFiles/split.dir/build make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make -f apps/CMakeFiles/mk_analyze_hdr.dir/build.make apps/CMakeFiles/mk_analyze_hdr.dir/build +make -f apps/CMakeFiles/split.dir/build.make apps/CMakeFiles/split.dir/build +make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +make[4]: Nothing to be done for 'apps/CMakeFiles/regress.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make -f apps/CMakeFiles/registrationx.dir/build.make apps/CMakeFiles/registrationx.dir/build +[ 82%] Built target histogram make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/groupwise_warp.dir/build.make apps/CMakeFiles/groupwise_warp.dir/build -make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make -f apps/CMakeFiles/avg_adm.dir/build.make apps/CMakeFiles/avg_adm.dir/build -make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'apps/CMakeFiles/histogram.dir/build'. -make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 83%] Built target histogram -make -f apps/CMakeFiles/average_labels.dir/build.make apps/CMakeFiles/average_labels.dir/depend +make -f apps/CMakeFiles/registrationx.dir/build.make apps/CMakeFiles/registrationx.dir/depend make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'apps/CMakeFiles/stream_pixels.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/average_labels.dir/DependInfo.cmake --color= -[ 83%] Built target stream_pixels -make -f apps/CMakeFiles/concat_affine.dir/build.make apps/CMakeFiles/concat_affine.dir/depend +[ 83%] Built target dwi_mask_bad_slices +make -f apps/CMakeFiles/groupwise_affine.dir/build.make apps/CMakeFiles/groupwise_affine.dir/depend make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'apps/CMakeFiles/fit_affine_dfield.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +[ 83%] Built target regress +make -f apps/CMakeFiles/mk_analyze_hdr.dir/build.make apps/CMakeFiles/mk_analyze_hdr.dir/depend make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'apps/CMakeFiles/mk_nifti_hdr.dir/build'. -make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/registrationx.dir/DependInfo.cmake --color= +make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/groupwise_affine.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'apps/CMakeFiles/average_images.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/concat_affine.dir/DependInfo.cmake --color= +[ 83%] Built target stream_pixels +make -f apps/CMakeFiles/average_labels.dir/build.make apps/CMakeFiles/average_labels.dir/depend [ 83%] Built target fit_affine_dfield +make -f apps/CMakeFiles/concat_affine.dir/build.make apps/CMakeFiles/concat_affine.dir/depend +make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/mk_analyze_hdr.dir/DependInfo.cmake --color= +make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/average_labels.dir/DependInfo.cmake --color= +[ 83%] Built target average_images make -f apps/CMakeFiles/warpx.dir/build.make apps/CMakeFiles/warpx.dir/depend -[ 84%] Built target mk_nifti_hdr -make -f apps/CMakeFiles/volume_injection.dir/build.make apps/CMakeFiles/volume_injection.dir/depend -[ 84%] Built target average_images -make -f apps/CMakeFiles/groupwise_init.dir/build.make apps/CMakeFiles/groupwise_init.dir/depend make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'apps/CMakeFiles/asegment.dir/build'. +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/concat_affine.dir/DependInfo.cmake --color= +make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +make[4]: Nothing to be done for 'apps/CMakeFiles/pxsearch.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/warpx.dir/DependInfo.cmake --color= +[ 83%] Built target pxsearch +make -f apps/CMakeFiles/volume_injection.dir/build.make apps/CMakeFiles/volume_injection.dir/depend make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'apps/CMakeFiles/pxsearch.dir/build'. +make[4]: Nothing to be done for 'apps/CMakeFiles/asegment.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/volume_injection.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/groupwise_init.dir/DependInfo.cmake --color= -[ 84%] Built target asegment +make[4]: Nothing to be done for 'apps/CMakeFiles/mk_nifti_hdr.dir/build'. +make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +[ 83%] Built target asegment +make -f apps/CMakeFiles/groupwise_init.dir/build.make apps/CMakeFiles/groupwise_init.dir/depend +[ 84%] Built target mk_nifti_hdr make -f apps/CMakeFiles/mk_adni_phantom.dir/build.make apps/CMakeFiles/mk_adni_phantom.dir/depend -[ 84%] Built target pxsearch -make -f apps/CMakeFiles/sbai.dir/build.make apps/CMakeFiles/sbai.dir/depend +make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/groupwise_init.dir/DependInfo.cmake --color= +make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/mk_adni_phantom.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'apps/CMakeFiles/lvote.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'apps/CMakeFiles/vol2csv.dir/build'. +make[4]: Nothing to be done for 'apps/CMakeFiles/fit_affine_xform.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +make -f apps/CMakeFiles/avg_adm.dir/build.make apps/CMakeFiles/avg_adm.dir/build +[ 85%] Built target lvote +make -f apps/CMakeFiles/sbai.dir/build.make apps/CMakeFiles/sbai.dir/depend make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/mk_adni_phantom.dir/DependInfo.cmake --color= +make[4]: Nothing to be done for 'apps/CMakeFiles/vol2csv.dir/build'. +make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +[ 85%] Built target fit_affine_xform +make -f apps/CMakeFiles/describe.dir/build.make apps/CMakeFiles/describe.dir/depend make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/sbai.dir/DependInfo.cmake --color= -[ 85%] Built target lvote -make -f apps/CMakeFiles/describe.dir/build.make apps/CMakeFiles/describe.dir/depend [ 85%] Built target vol2csv make -f apps/CMakeFiles/average_affine.dir/build.make apps/CMakeFiles/average_affine.dir/depend make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/describe.dir/DependInfo.cmake --color= -make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make -f apps/CMakeFiles/groupwise_affine.dir/build.make apps/CMakeFiles/groupwise_affine.dir/build make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/average_affine.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'apps/CMakeFiles/fit_affine_xform.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 85%] Built target fit_affine_xform -make -f apps/CMakeFiles/glm.dir/build.make apps/CMakeFiles/glm.dir/depend -make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'apps/CMakeFiles/mk_analyze_hdr.dir/build'. +make -f apps/CMakeFiles/mk_analyze_hdr.dir/build.make apps/CMakeFiles/mk_analyze_hdr.dir/build make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/glm.dir/DependInfo.cmake --color= -[ 85%] Built target mk_analyze_hdr -make -f apps/CMakeFiles/make_initial_affine.dir/build.make apps/CMakeFiles/make_initial_affine.dir/depend -make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/make_initial_affine.dir/DependInfo.cmake --color= +make -f apps/CMakeFiles/average_labels.dir/build.make apps/CMakeFiles/average_labels.dir/build make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'apps/CMakeFiles/split.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 85%] Built target split -make -f apps/CMakeFiles/convert_warp.dir/build.make apps/CMakeFiles/convert_warp.dir/depend make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make -f apps/CMakeFiles/average_labels.dir/build.make apps/CMakeFiles/average_labels.dir/build -make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/convert_warp.dir/DependInfo.cmake --color= +make -f apps/CMakeFiles/registrationx.dir/build.make apps/CMakeFiles/registrationx.dir/build make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/concat_affine.dir/build.make apps/CMakeFiles/concat_affine.dir/build +[ 85%] Built target split +make -f apps/CMakeFiles/glm.dir/build.make apps/CMakeFiles/glm.dir/depend make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'apps/CMakeFiles/registrationx.dir/build'. +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/glm.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 86%] Built target registrationx -make -f apps/CMakeFiles/destripe.dir/build.make apps/CMakeFiles/destripe.dir/depend +make -f apps/CMakeFiles/warpx.dir/build.make apps/CMakeFiles/warpx.dir/build make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/mk_adni_phantom.dir/build.make apps/CMakeFiles/mk_adni_phantom.dir/build -make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/destripe.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make -f apps/CMakeFiles/warpx.dir/build.make apps/CMakeFiles/warpx.dir/build -make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'apps/CMakeFiles/avg_adm.dir/build'. +make -f apps/CMakeFiles/volume_injection.dir/build.make apps/CMakeFiles/volume_injection.dir/build make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +make -f apps/CMakeFiles/groupwise_affine.dir/build.make apps/CMakeFiles/groupwise_affine.dir/build +make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +make[4]: Nothing to be done for 'apps/CMakeFiles/mk_analyze_hdr.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make -f apps/CMakeFiles/volume_injection.dir/build.make apps/CMakeFiles/volume_injection.dir/build make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/groupwise_init.dir/build.make apps/CMakeFiles/groupwise_init.dir/build +make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +make[4]: Nothing to be done for 'apps/CMakeFiles/groupwise_warp.dir/build'. +make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +[ 85%] Built target mk_analyze_hdr +make -f apps/CMakeFiles/make_initial_affine.dir/build.make apps/CMakeFiles/make_initial_affine.dir/depend +[ 85%] Built target groupwise_warp +make -f apps/CMakeFiles/convert_warp.dir/build.make apps/CMakeFiles/convert_warp.dir/depend make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/sbai.dir/build.make apps/CMakeFiles/sbai.dir/build -[ 86%] Built target avg_adm -make -f apps/CMakeFiles/imagemath.dir/build.make apps/CMakeFiles/imagemath.dir/depend +make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/make_initial_affine.dir/DependInfo.cmake --color= +make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/convert_warp.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/describe.dir/build.make apps/CMakeFiles/describe.dir/build +make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +make -f apps/CMakeFiles/average_affine.dir/build.make apps/CMakeFiles/average_affine.dir/build make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'apps/CMakeFiles/groupwise_warp.dir/build'. +make[4]: Nothing to be done for 'apps/CMakeFiles/avg_adm.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +[ 85%] Built target avg_adm +make -f apps/CMakeFiles/destripe.dir/build.make apps/CMakeFiles/destripe.dir/depend make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/imagemath.dir/DependInfo.cmake --color= +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/destripe.dir/DependInfo.cmake --color= +make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +make[4]: Nothing to be done for 'apps/CMakeFiles/average_labels.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make -f apps/CMakeFiles/average_affine.dir/build.make apps/CMakeFiles/average_affine.dir/build -[ 86%] Built target groupwise_warp -make -f apps/CMakeFiles/similarity.dir/build.make apps/CMakeFiles/similarity.dir/depend make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/glm.dir/build.make apps/CMakeFiles/glm.dir/build +[ 86%] Built target average_labels +make -f apps/CMakeFiles/imagemath.dir/build.make apps/CMakeFiles/imagemath.dir/depend make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/similarity.dir/DependInfo.cmake --color= +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/imagemath.dir/DependInfo.cmake --color= +make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +make[4]: Nothing to be done for 'apps/CMakeFiles/concat_affine.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make -f apps/CMakeFiles/make_initial_affine.dir/build.make apps/CMakeFiles/make_initial_affine.dir/build +make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +make[4]: Nothing to be done for 'apps/CMakeFiles/registrationx.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make -f apps/CMakeFiles/convert_warp.dir/build.make apps/CMakeFiles/convert_warp.dir/build +[ 87%] Built target concat_affine +make -f apps/CMakeFiles/similarity.dir/build.make apps/CMakeFiles/similarity.dir/depend make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'apps/CMakeFiles/groupwise_affine.dir/build'. +make[4]: Nothing to be done for 'apps/CMakeFiles/mk_adni_phantom.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 86%] Built target groupwise_affine +[ 88%] Built target registrationx make -f apps/CMakeFiles/gregxform.dir/build.make apps/CMakeFiles/gregxform.dir/depend make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'apps/CMakeFiles/average_labels.dir/build'. -make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/similarity.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/gregxform.dir/DependInfo.cmake --color= -[ 87%] Built target average_labels +[ 89%] Built target mk_adni_phantom make -f apps/CMakeFiles/dof2mat.dir/build.make apps/CMakeFiles/dof2mat.dir/depend +make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +make[4]: Nothing to be done for 'apps/CMakeFiles/warpx.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make -f apps/CMakeFiles/destripe.dir/build.make apps/CMakeFiles/destripe.dir/build make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/dof2mat.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'apps/CMakeFiles/concat_affine.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'apps/CMakeFiles/mk_adni_phantom.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 88%] Built target concat_affine +make -f apps/CMakeFiles/make_initial_affine.dir/build.make apps/CMakeFiles/make_initial_affine.dir/build +make -f apps/CMakeFiles/convert_warp.dir/build.make apps/CMakeFiles/convert_warp.dir/build +[ 89%] Built target warpx make -f apps/CMakeFiles/levelset.dir/build.make apps/CMakeFiles/levelset.dir/depend +make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +make[4]: Nothing to be done for 'apps/CMakeFiles/volume_injection.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make -f apps/CMakeFiles/imagemath.dir/build.make apps/CMakeFiles/imagemath.dir/build -[ 89%] Built target mk_adni_phantom -make -f apps/CMakeFiles/fit_spline_dfield.dir/build.make apps/CMakeFiles/fit_spline_dfield.dir/depend make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/levelset.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/fit_spline_dfield.dir/DependInfo.cmake --color= +[ 89%] Built target volume_injection +make -f apps/CMakeFiles/fit_spline_dfield.dir/build.make apps/CMakeFiles/fit_spline_dfield.dir/depend make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'apps/CMakeFiles/describe.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'apps/CMakeFiles/warpx.dir/build'. -make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +make[4]: Nothing to be done for 'apps/CMakeFiles/groupwise_init.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make -f apps/CMakeFiles/similarity.dir/build.make apps/CMakeFiles/similarity.dir/build +make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/fit_spline_dfield.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'apps/CMakeFiles/sbai.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' [ 90%] Built target describe make -f apps/CMakeFiles/lsba.dir/build.make apps/CMakeFiles/lsba.dir/depend -[ 90%] Built target warpx -make -f apps/CMakeFiles/interleaved_bad_slices.dir/build.make apps/CMakeFiles/interleaved_bad_slices.dir/depend -make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'apps/CMakeFiles/volume_injection.dir/build'. -make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 90%] Built target sbai -make -f apps/CMakeFiles/lmsba.dir/build.make apps/CMakeFiles/lmsba.dir/depend make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'apps/CMakeFiles/average_affine.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +[ 91%] Built target groupwise_init +make -f apps/CMakeFiles/interleaved_bad_slices.dir/build.make apps/CMakeFiles/interleaved_bad_slices.dir/depend make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/lsba.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'apps/CMakeFiles/groupwise_init.dir/build'. -make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +[ 91%] Built target sbai +make -f apps/CMakeFiles/lmsba.dir/build.make apps/CMakeFiles/lmsba.dir/depend +[ 92%] Built target average_affine +make -f apps/CMakeFiles/statistics.dir/build.make apps/CMakeFiles/statistics.dir/depend make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/interleaved_bad_slices.dir/DependInfo.cmake --color= -[ 90%] Built target volume_injection -make -f apps/CMakeFiles/statistics.dir/build.make apps/CMakeFiles/statistics.dir/depend make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'apps/CMakeFiles/glm.dir/build'. +make[4]: Nothing to be done for 'apps/CMakeFiles/groupwise_affine.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/lmsba.dir/DependInfo.cmake --color= -[ 91%] Built target average_affine -make -f apps/CMakeFiles/mk_phantom_3d.dir/build.make apps/CMakeFiles/mk_phantom_3d.dir/depend -[ 92%] Built target groupwise_init -make -f apps/CMakeFiles/mrbias.dir/build.make apps/CMakeFiles/mrbias.dir/depend make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/statistics.dir/DependInfo.cmake --color= -[ 92%] Built target glm -make -f apps/CMakeFiles/convertx.dir/build.make apps/CMakeFiles/convertx.dir/depend +[ 92%] Built target groupwise_affine +make -f apps/CMakeFiles/mk_phantom_3d.dir/build.make apps/CMakeFiles/mk_phantom_3d.dir/depend +make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +make -f apps/CMakeFiles/destripe.dir/build.make apps/CMakeFiles/destripe.dir/build make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/mk_phantom_3d.dir/DependInfo.cmake --color= +make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +make -f apps/CMakeFiles/imagemath.dir/build.make apps/CMakeFiles/imagemath.dir/build +make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +make[4]: Nothing to be done for 'apps/CMakeFiles/glm.dir/build'. +make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +make -f apps/CMakeFiles/dof2mat.dir/build.make apps/CMakeFiles/dof2mat.dir/build +[ 92%] Built target glm +make -f apps/CMakeFiles/mrbias.dir/build.make apps/CMakeFiles/mrbias.dir/depend +make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +make -f apps/CMakeFiles/gregxform.dir/build.make apps/CMakeFiles/gregxform.dir/build make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/mrbias.dir/DependInfo.cmake --color= +make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +make -f apps/CMakeFiles/similarity.dir/build.make apps/CMakeFiles/similarity.dir/build +make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +make -f apps/CMakeFiles/levelset.dir/build.make apps/CMakeFiles/levelset.dir/build make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'apps/CMakeFiles/make_initial_affine.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/convertx.dir/DependInfo.cmake --color= +make[4]: Nothing to be done for 'apps/CMakeFiles/convert_warp.dir/build'. +make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +make -f apps/CMakeFiles/fit_spline_dfield.dir/build.make apps/CMakeFiles/fit_spline_dfield.dir/build [ 92%] Built target make_initial_affine +make -f apps/CMakeFiles/convertx.dir/build.make apps/CMakeFiles/convertx.dir/depend +[ 92%] Built target convert_warp make -f apps/CMakeFiles/overlap.dir/build.make apps/CMakeFiles/overlap.dir/depend +make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +make -f apps/CMakeFiles/lsba.dir/build.make apps/CMakeFiles/lsba.dir/build +make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/convertx.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/overlap.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make -f apps/CMakeFiles/dof2mat.dir/build.make apps/CMakeFiles/dof2mat.dir/build +make -f apps/CMakeFiles/interleaved_bad_slices.dir/build.make apps/CMakeFiles/interleaved_bad_slices.dir/build make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make -f apps/CMakeFiles/gregxform.dir/build.make apps/CMakeFiles/gregxform.dir/build +make -f apps/CMakeFiles/lmsba.dir/build.make apps/CMakeFiles/lmsba.dir/build +make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +make -f apps/CMakeFiles/mk_phantom_3d.dir/build.make apps/CMakeFiles/mk_phantom_3d.dir/build +make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +make -f apps/CMakeFiles/statistics.dir/build.make apps/CMakeFiles/statistics.dir/build make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'apps/CMakeFiles/convert_warp.dir/build'. +make[4]: Nothing to be done for 'apps/CMakeFiles/destripe.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 92%] Built target convert_warp +[ 92%] Built target destripe make -f apps/CMakeFiles/filter.dir/build.make apps/CMakeFiles/filter.dir/depend make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/filter.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'apps/CMakeFiles/destripe.dir/build'. +make[4]: Nothing to be done for 'apps/CMakeFiles/dof2mat.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 92%] Built target destripe +[ 92%] Built target dof2mat make -f apps/CMakeFiles/probe.dir/build.make apps/CMakeFiles/probe.dir/depend -make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make -f apps/CMakeFiles/levelset.dir/build.make apps/CMakeFiles/levelset.dir/build make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/probe.dir/DependInfo.cmake --color= -make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make -f apps/CMakeFiles/fit_spline_dfield.dir/build.make apps/CMakeFiles/fit_spline_dfield.dir/build -make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make -f apps/CMakeFiles/lsba.dir/build.make apps/CMakeFiles/lsba.dir/build make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'apps/CMakeFiles/imagemath.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make -f apps/CMakeFiles/lmsba.dir/build.make apps/CMakeFiles/lmsba.dir/build -make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make -f apps/CMakeFiles/interleaved_bad_slices.dir/build.make apps/CMakeFiles/interleaved_bad_slices.dir/build [ 92%] Built target imagemath make -f apps/CMakeFiles/reformatx.dir/build.make apps/CMakeFiles/reformatx.dir/depend +make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +make[4]: Nothing to be done for 'apps/CMakeFiles/gregxform.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make -f apps/CMakeFiles/mk_phantom_3d.dir/build.make apps/CMakeFiles/mk_phantom_3d.dir/build make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/reformatx.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'apps/CMakeFiles/similarity.dir/build'. -make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make -f apps/CMakeFiles/statistics.dir/build.make apps/CMakeFiles/statistics.dir/build -make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make -f apps/CMakeFiles/overlap.dir/build.make apps/CMakeFiles/overlap.dir/build -[ 92%] Built target similarity +[ 92%] Built target gregxform make -f apps/CMakeFiles/registration.dir/build.make apps/CMakeFiles/registration.dir/depend +make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +make -f apps/CMakeFiles/mrbias.dir/build.make apps/CMakeFiles/mrbias.dir/build make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/registration.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'apps/CMakeFiles/dof2mat.dir/build'. -make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +make[4]: Nothing to be done for 'apps/CMakeFiles/similarity.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make -f apps/CMakeFiles/mrbias.dir/build.make apps/CMakeFiles/mrbias.dir/build -[ 92%] Built target dof2mat +[ 92%] Built target similarity make -f apps/CMakeFiles/sba.dir/build.make apps/CMakeFiles/sba.dir/depend make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/sba.dir/DependInfo.cmake --color= -make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make -f apps/CMakeFiles/convertx.dir/build.make apps/CMakeFiles/convertx.dir/build +make[4]: Nothing to be done for 'apps/CMakeFiles/levelset.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make -f apps/CMakeFiles/filter.dir/build.make apps/CMakeFiles/filter.dir/build -make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'apps/CMakeFiles/gregxform.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 92%] Built target gregxform -make -f apps/CMakeFiles/mcaffine.dir/build.make apps/CMakeFiles/mcaffine.dir/depend +make -f apps/CMakeFiles/overlap.dir/build.make apps/CMakeFiles/overlap.dir/build make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/mcaffine.dir/DependInfo.cmake --color= -make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make -f apps/CMakeFiles/probe.dir/build.make apps/CMakeFiles/probe.dir/build +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/sba.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'apps/CMakeFiles/fit_spline_dfield.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +[ 93%] Built target levelset +make -f apps/CMakeFiles/mcaffine.dir/build.make apps/CMakeFiles/mcaffine.dir/depend make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'apps/CMakeFiles/levelset.dir/build'. +make[4]: Nothing to be done for 'apps/CMakeFiles/lsba.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 92%] Built target fit_spline_dfield +make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/mcaffine.dir/DependInfo.cmake --color= +[ 93%] Built target fit_spline_dfield make -f apps/CMakeFiles/sequence.dir/build.make apps/CMakeFiles/sequence.dir/depend -[ 93%] Built target levelset +[ 93%] Built target lsba make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p1+dfsg /build/cmtk-3.3.1p1+dfsg/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/sequence.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'apps/CMakeFiles/lsba.dir/build'. +make[4]: Nothing to be done for 'apps/CMakeFiles/lmsba.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'apps/CMakeFiles/lmsba.dir/build'. +make[4]: Nothing to be done for 'apps/CMakeFiles/interleaved_bad_slices.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 93%] Built target lsba make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'apps/CMakeFiles/mk_phantom_3d.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' [ 93%] Built target lmsba +make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +make -f apps/CMakeFiles/convertx.dir/build.make apps/CMakeFiles/convertx.dir/build +[ 94%] Built target interleaved_bad_slices +make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +make -f apps/CMakeFiles/filter.dir/build.make apps/CMakeFiles/filter.dir/build +[ 94%] Built target mk_phantom_3d make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'apps/CMakeFiles/interleaved_bad_slices.dir/build'. +make[4]: Nothing to be done for 'apps/CMakeFiles/statistics.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +make -f apps/CMakeFiles/probe.dir/build.make apps/CMakeFiles/probe.dir/build +[ 95%] Built target statistics +make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +make -f apps/CMakeFiles/sequence.dir/build.make apps/CMakeFiles/sequence.dir/build +make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/reformatx.dir/build.make apps/CMakeFiles/reformatx.dir/build -[ 93%] Built target mk_phantom_3d -[ 94%] Built target interleaved_bad_slices make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/registration.dir/build.make apps/CMakeFiles/registration.dir/build +make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +make -f apps/CMakeFiles/sba.dir/build.make apps/CMakeFiles/sba.dir/build make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'apps/CMakeFiles/overlap.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make -f apps/CMakeFiles/sba.dir/build.make apps/CMakeFiles/sba.dir/build -[ 95%] Built target overlap make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'apps/CMakeFiles/statistics.dir/build'. +make[4]: Nothing to be done for 'apps/CMakeFiles/mrbias.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 96%] Built target statistics +[ 96%] Built target overlap +[ 96%] Built target mrbias make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make -f apps/CMakeFiles/sequence.dir/build.make apps/CMakeFiles/sequence.dir/build +make -f apps/CMakeFiles/mcaffine.dir/build.make apps/CMakeFiles/mcaffine.dir/build make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'apps/CMakeFiles/mrbias.dir/build'. +make[4]: Nothing to be done for 'apps/CMakeFiles/sequence.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'apps/CMakeFiles/filter.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 96%] Built target mrbias -[ 97%] Built target filter make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'apps/CMakeFiles/convertx.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'apps/CMakeFiles/probe.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 97%] Built target convertx -[ 97%] Built target probe -make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make -f apps/CMakeFiles/mcaffine.dir/build.make apps/CMakeFiles/mcaffine.dir/build +[ 97%] Built target sequence +[ 98%] Built target filter +[ 98%] Built target convertx +[ 98%] Built target probe make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'apps/CMakeFiles/sequence.dir/build'. +make[4]: Nothing to be done for 'apps/CMakeFiles/sba.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 98%] Built target sequence make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'apps/CMakeFiles/sba.dir/build'. +make[4]: Nothing to be done for 'apps/CMakeFiles/registration.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[ 99%] Built target sba make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'apps/CMakeFiles/reformatx.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'apps/CMakeFiles/registration.dir/build'. -make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' -[100%] Built target reformatx -[100%] Built target registration -make[4]: Entering directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'apps/CMakeFiles/mcaffine.dir/build'. make[4]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' +[ 99%] Built target sba +[ 99%] Built target registration [100%] Built target mcaffine +[100%] Built target reformatx make[3]: Leaving directory '/build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/cmtk-3.3.1p1+dfsg/obj-x86_64-linux-gnu/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall @@ -5866,7 +5901,7 @@ ERROR: ld.so: object 'libfakeroot-sysv.so' from LD_PRELOAD cannot be preloaded (cannot open shared object file): ignored. ERROR: ld.so: object 'libfakeroot-sysv.so' from LD_PRELOAD cannot be preloaded (cannot open shared object file): ignored. ERROR: ld.so: object 'libfakeroot-sysv.so' from LD_PRELOAD cannot be preloaded (cannot open shared object file): ignored. -/build/cmtk-3.3.1p1+dfsg/debian/cmtk/usr/lib/cmtk/bin/cmtk_functions.sh: 37: .: cannot open /usr/lib/cmtk/bin/cmtk_locking.sh: No such file +/build/cmtk-3.3.1p1+dfsg/debian/cmtk/usr/lib/cmtk/bin/cmtk_functions.sh: line 37: /usr/lib/cmtk/bin/cmtk_locking.sh: No such file or directory Manpage for /build/cmtk-3.3.1p1+dfsg/debian/cmtk/usr/lib/cmtk/bin/cmtk_functions.sh -- FAILED ERROR: ld.so: object 'libfakeroot-sysv.so' from LD_PRELOAD cannot be preloaded (cannot open shared object file): ignored. ERROR: ld.so: object 'libfakeroot-sysv.so' from LD_PRELOAD cannot be preloaded (cannot open shared object file): ignored. @@ -5874,13 +5909,13 @@ ERROR: ld.so: object 'libfakeroot-sysv.so' from LD_PRELOAD cannot be preloaded (cannot open shared object file): ignored. ERROR: ld.so: object 'libfakeroot-sysv.so' from LD_PRELOAD cannot be preloaded (cannot open shared object file): ignored. ERROR: ld.so: object 'libfakeroot-sysv.so' from LD_PRELOAD cannot be preloaded (cannot open shared object file): ignored. -/build/cmtk-3.3.1p1+dfsg/debian/cmtk/usr/lib/cmtk/bin/correct_dwi_distortion: 34: .: cannot open /usr/lib/cmtk/bin/cmtk_functions.sh: No such file +/build/cmtk-3.3.1p1+dfsg/debian/cmtk/usr/lib/cmtk/bin/correct_dwi_distortion: line 34: /usr/lib/cmtk/bin/cmtk_functions.sh: No such file or directory Manpage for /build/cmtk-3.3.1p1+dfsg/debian/cmtk/usr/lib/cmtk/bin/correct_dwi_distortion -- FAILED ERROR: ld.so: object 'libfakeroot-sysv.so' from LD_PRELOAD cannot be preloaded (cannot open shared object file): ignored. -/build/cmtk-3.3.1p1+dfsg/debian/cmtk/usr/lib/cmtk/bin/correct_dwi_distortion_and_motion: 34: .: cannot open /usr/lib/cmtk/bin/cmtk_functions.sh: No such file +/build/cmtk-3.3.1p1+dfsg/debian/cmtk/usr/lib/cmtk/bin/correct_dwi_distortion_and_motion: line 34: /usr/lib/cmtk/bin/cmtk_functions.sh: No such file or directory Manpage for /build/cmtk-3.3.1p1+dfsg/debian/cmtk/usr/lib/cmtk/bin/correct_dwi_distortion_and_motion -- FAILED ERROR: ld.so: object 'libfakeroot-sysv.so' from LD_PRELOAD cannot be preloaded (cannot open shared object file): ignored. -/build/cmtk-3.3.1p1+dfsg/debian/cmtk/usr/lib/cmtk/bin/correct_nex_motion: 36: .: cannot open /usr/lib/cmtk/bin/cmtk_functions.sh: No such file +/build/cmtk-3.3.1p1+dfsg/debian/cmtk/usr/lib/cmtk/bin/correct_nex_motion: line 36: /usr/lib/cmtk/bin/cmtk_functions.sh: No such file or directory Manpage for /build/cmtk-3.3.1p1+dfsg/debian/cmtk/usr/lib/cmtk/bin/correct_nex_motion -- FAILED ERROR: ld.so: object 'libfakeroot-sysv.so' from LD_PRELOAD cannot be preloaded (cannot open shared object file): ignored. ERROR: ld.so: object 'libfakeroot-sysv.so' from LD_PRELOAD cannot be preloaded (cannot open shared object file): ignored. @@ -5907,7 +5942,7 @@ ERROR: ld.so: object 'libfakeroot-sysv.so' from LD_PRELOAD cannot be preloaded (cannot open shared object file): ignored. ERROR: ld.so: object 'libfakeroot-sysv.so' from LD_PRELOAD cannot be preloaded (cannot open shared object file): ignored. ERROR: ld.so: object 'libfakeroot-sysv.so' from LD_PRELOAD cannot be preloaded (cannot open shared object file): ignored. -/build/cmtk-3.3.1p1+dfsg/debian/cmtk/usr/lib/cmtk/bin/groupwise_reformat: 36: .: cannot open /usr/lib/cmtk/bin/cmtk_functions.sh: No such file +/build/cmtk-3.3.1p1+dfsg/debian/cmtk/usr/lib/cmtk/bin/groupwise_reformat: line 36: /usr/lib/cmtk/bin/cmtk_functions.sh: No such file or directory Manpage for /build/cmtk-3.3.1p1+dfsg/debian/cmtk/usr/lib/cmtk/bin/groupwise_reformat -- FAILED ERROR: ld.so: object 'libfakeroot-sysv.so' from LD_PRELOAD cannot be preloaded (cannot open shared object file): ignored. ERROR: ld.so: object 'libfakeroot-sysv.so' from LD_PRELOAD cannot be preloaded (cannot open shared object file): ignored. @@ -6070,51 +6105,30 @@ install -p -m0644 debian/manpages/cmtk-xform2itk.1 debian/cmtk/usr/share/man/man1/cmtk-xform2itk.1 install -p -m0644 debian/manpages/cmtk-xform2scalar.1 debian/cmtk/usr/share/man/man1/cmtk-xform2scalar.1 install -p -m0644 debian/manpages/cmtk.1 debian/cmtk/usr/share/man/man1/cmtk.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/cmtk/usr/share/man/man1/cmtk-asegment.1 debian/cmtk/usr/share/man/man1/cmtk-asegment_sri24.1 debian/cmtk/usr/share/man/man1/cmtk-average_affine.1 debian/cmtk/usr/share/man/man1/cmtk-average_images.1 debian/cmtk/usr/share/man/man1/cmtk-average_labels.1 debian/cmtk/usr/share/man/man1/cmtk-avg_adm.1 man-recode --to-code UTF-8 --suffix .dh-new debian/cmtk/usr/share/man/man1/cmtk-concat_affine.1 debian/cmtk/usr/share/man/man1/cmtk-convert_warp.1 debian/cmtk/usr/share/man/man1/cmtk-convertx.1 debian/cmtk/usr/share/man/man1/cmtk-dbtool.1 debian/cmtk/usr/share/man/man1/cmtk-dcm2image.1 debian/cmtk/usr/share/man/man1/cmtk-describe.1 man-recode --to-code UTF-8 --suffix .dh-new debian/cmtk/usr/share/man/man1/cmtk-destripe.1 debian/cmtk/usr/share/man/man1/cmtk-detect_adni_phantom.1 debian/cmtk/usr/share/man/man1/cmtk-detect_spheres_matched_filter.1 debian/cmtk/usr/share/man/man1/cmtk-dof2mat.1 debian/cmtk/usr/share/man/man1/cmtk-dwi_mask_bad_slices.1 debian/cmtk/usr/share/man/man1/cmtk-epiunwarp.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/cmtk/usr/share/man/man1/cmtk-imagemath.1 debian/cmtk/usr/share/man/man1/cmtk-interleaved_bad_slices.1 debian/cmtk/usr/share/man/man1/cmtk-iterative_shape_averaging.1 debian/cmtk/usr/share/man/man1/cmtk-jidb.1 debian/cmtk/usr/share/man/man1/cmtk-levelset.1 debian/cmtk/usr/share/man/man1/cmtk-lmsba.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/cmtk/usr/share/man/man1/cmtk-lsba.1 debian/cmtk/usr/share/man/man1/cmtk-lvote.1 debian/cmtk/usr/share/man/man1/cmtk-make_initial_affine.1 debian/cmtk/usr/share/man/man1/cmtk-mat2dof.1 debian/cmtk/usr/share/man/man1/cmtk-mcaffine.1 debian/cmtk/usr/share/man/man1/cmtk-mcwarp.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/cmtk/usr/share/man/man1/cmtk-asegment.1 debian/cmtk/usr/share/man/man1/cmtk-asegment_sri24.1 debian/cmtk/usr/share/man/man1/cmtk-average_affine.1 debian/cmtk/usr/share/man/man1/cmtk-average_images.1 debian/cmtk/usr/share/man/man1/cmtk-average_labels.1 debian/cmtk/usr/share/man/man1/cmtk-avg_adm.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/cmtk/usr/share/man/man1/cmtk-fib2image.1 debian/cmtk/usr/share/man/man1/cmtk-fibxform.1 debian/cmtk/usr/share/man/man1/cmtk-film.1 debian/cmtk/usr/share/man/man1/cmtk-filter.1 debian/cmtk/usr/share/man/man1/cmtk-fit_affine_dfield.1 debian/cmtk/usr/share/man/man1/cmtk-fit_affine_xform.1 man-recode --to-code UTF-8 --suffix .dh-new debian/cmtk/usr/share/man/man1/cmtk-fit_affine_xform_landmarks.1 debian/cmtk/usr/share/man/man1/cmtk-fit_spline_dfield.1 debian/cmtk/usr/share/man/man1/cmtk-fit_spline_xform.1 debian/cmtk/usr/share/man/man1/cmtk-geomatch.1 debian/cmtk/usr/share/man/man1/cmtk-glm.1 debian/cmtk/usr/share/man/man1/cmtk-gmm.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/cmtk/usr/share/man/man1/cmtk-mk_adni_phantom.1 debian/cmtk/usr/share/man/man1/cmtk-mk_analyze_hdr.1 debian/cmtk/usr/share/man/man1/cmtk-mk_nifti_hdr.1 debian/cmtk/usr/share/man/man1/cmtk-mk_phantom_3d.1 debian/cmtk/usr/share/man/man1/cmtk-mrbias.1 debian/cmtk/usr/share/man/man1/cmtk-overlap.1 man-recode --to-code UTF-8 --suffix .dh-new debian/cmtk/usr/share/man/man1/cmtk-gregxform.1 debian/cmtk/usr/share/man/man1/cmtk-groupwise_affine.1 debian/cmtk/usr/share/man/man1/cmtk-groupwise_init.1 debian/cmtk/usr/share/man/man1/cmtk-groupwise_warp.1 debian/cmtk/usr/share/man/man1/cmtk-hausdorff.1 debian/cmtk/usr/share/man/man1/cmtk-histogram.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/cmtk/usr/share/man/man1/cmtk-imagemath.1 debian/cmtk/usr/share/man/man1/cmtk-interleaved_bad_slices.1 debian/cmtk/usr/share/man/man1/cmtk-iterative_shape_averaging.1 debian/cmtk/usr/share/man/man1/cmtk-jidb.1 debian/cmtk/usr/share/man/man1/cmtk-levelset.1 debian/cmtk/usr/share/man/man1/cmtk-lmsba.1 man-recode --to-code UTF-8 --suffix .dh-new debian/cmtk/usr/share/man/man1/cmtk-probe.1 debian/cmtk/usr/share/man/man1/cmtk-pxsearch.1 debian/cmtk/usr/share/man/man1/cmtk-reformatx.1 debian/cmtk/usr/share/man/man1/cmtk-registration.1 debian/cmtk/usr/share/man/man1/cmtk-registrationx.1 debian/cmtk/usr/share/man/man1/cmtk-regress.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/cmtk/usr/share/man/man1/cmtk-fib2image.1 debian/cmtk/usr/share/man/man1/cmtk-fibxform.1 debian/cmtk/usr/share/man/man1/cmtk-film.1 debian/cmtk/usr/share/man/man1/cmtk-filter.1 debian/cmtk/usr/share/man/man1/cmtk-fit_affine_dfield.1 debian/cmtk/usr/share/man/man1/cmtk-fit_affine_xform.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/cmtk/usr/share/man/man1/cmtk-statistics.1 debian/cmtk/usr/share/man/man1/cmtk-stream_pixels.1 debian/cmtk/usr/share/man/man1/cmtk-streamxform.1 debian/cmtk/usr/share/man/man1/cmtk-sympl.1 debian/cmtk/usr/share/man/man1/cmtk-symplx.1 debian/cmtk/usr/share/man/man1/cmtk-ttest.1 man-recode --to-code UTF-8 --suffix .dh-new debian/cmtk/usr/share/man/man1/cmtk-reorient.1 debian/cmtk/usr/share/man/man1/cmtk-sba.1 debian/cmtk/usr/share/man/man1/cmtk-sbai.1 debian/cmtk/usr/share/man/man1/cmtk-sequence.1 debian/cmtk/usr/share/man/man1/cmtk-similarity.1 debian/cmtk/usr/share/man/man1/cmtk-split.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/cmtk/usr/share/man/man1/cmtk-mk_adni_phantom.1 debian/cmtk/usr/share/man/man1/cmtk-mk_analyze_hdr.1 debian/cmtk/usr/share/man/man1/cmtk-mk_nifti_hdr.1 debian/cmtk/usr/share/man/man1/cmtk-mk_phantom_3d.1 debian/cmtk/usr/share/man/man1/cmtk-mrbias.1 debian/cmtk/usr/share/man/man1/cmtk-overlap.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/cmtk/usr/share/man/man1/cmtk.1 man-recode --to-code UTF-8 --suffix .dh-new debian/cmtk/usr/share/man/man1/cmtk-unsplit.1 debian/cmtk/usr/share/man/man1/cmtk-unwarp_image_phantom.1 debian/cmtk/usr/share/man/man1/cmtk-vol2csv.1 debian/cmtk/usr/share/man/man1/cmtk-volume_injection.1 debian/cmtk/usr/share/man/man1/cmtk-volume_reconstruction.1 debian/cmtk/usr/share/man/man1/cmtk-vtkxform.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/cmtk/usr/share/man/man1/cmtk-lsba.1 debian/cmtk/usr/share/man/man1/cmtk-lvote.1 debian/cmtk/usr/share/man/man1/cmtk-make_initial_affine.1 debian/cmtk/usr/share/man/man1/cmtk-mat2dof.1 debian/cmtk/usr/share/man/man1/cmtk-mcaffine.1 debian/cmtk/usr/share/man/man1/cmtk-mcwarp.1 man-recode --to-code UTF-8 --suffix .dh-new debian/cmtk/usr/share/man/man1/cmtk-warp.1 debian/cmtk/usr/share/man/man1/cmtk-warp2ps.1 debian/cmtk/usr/share/man/man1/cmtk-warpx.1 debian/cmtk/usr/share/man/man1/cmtk-xform2dfield.1 debian/cmtk/usr/share/man/man1/cmtk-xform2itk.1 debian/cmtk/usr/share/man/man1/cmtk-xform2scalar.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/cmtk/usr/share/man/man1/cmtk.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/cmtk/usr/share/man/man1/cmtk-statistics.1 debian/cmtk/usr/share/man/man1/cmtk-stream_pixels.1 debian/cmtk/usr/share/man/man1/cmtk-streamxform.1 debian/cmtk/usr/share/man/man1/cmtk-sympl.1 debian/cmtk/usr/share/man/man1/cmtk-symplx.1 debian/cmtk/usr/share/man/man1/cmtk-ttest.1 mv debian/cmtk/usr/share/man/man1/cmtk.1.dh-new debian/cmtk/usr/share/man/man1/cmtk.1 chmod 0644 -- debian/cmtk/usr/share/man/man1/cmtk.1 - mv debian/cmtk/usr/share/man/man1/cmtk-lsba.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-lsba.1 - mv debian/cmtk/usr/share/man/man1/cmtk-lvote.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-lvote.1 - mv debian/cmtk/usr/share/man/man1/cmtk-make_initial_affine.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-make_initial_affine.1 - mv debian/cmtk/usr/share/man/man1/cmtk-mat2dof.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-mat2dof.1 - mv debian/cmtk/usr/share/man/man1/cmtk-mcaffine.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-mcaffine.1 - mv debian/cmtk/usr/share/man/man1/cmtk-mcwarp.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-mcwarp.1 - chmod 0644 -- debian/cmtk/usr/share/man/man1/cmtk-lsba.1 debian/cmtk/usr/share/man/man1/cmtk-lvote.1 debian/cmtk/usr/share/man/man1/cmtk-make_initial_affine.1 debian/cmtk/usr/share/man/man1/cmtk-mat2dof.1 debian/cmtk/usr/share/man/man1/cmtk-mcaffine.1 debian/cmtk/usr/share/man/man1/cmtk-mcwarp.1 - mv debian/cmtk/usr/share/man/man1/cmtk-concat_affine.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-concat_affine.1 - mv debian/cmtk/usr/share/man/man1/cmtk-convert_warp.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-convert_warp.1 - mv debian/cmtk/usr/share/man/man1/cmtk-convertx.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-convertx.1 - mv debian/cmtk/usr/share/man/man1/cmtk-dbtool.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-dbtool.1 - mv debian/cmtk/usr/share/man/man1/cmtk-dcm2image.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-dcm2image.1 - mv debian/cmtk/usr/share/man/man1/cmtk-describe.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-describe.1 - chmod 0644 -- debian/cmtk/usr/share/man/man1/cmtk-concat_affine.1 debian/cmtk/usr/share/man/man1/cmtk-convert_warp.1 debian/cmtk/usr/share/man/man1/cmtk-convertx.1 debian/cmtk/usr/share/man/man1/cmtk-dbtool.1 debian/cmtk/usr/share/man/man1/cmtk-dcm2image.1 debian/cmtk/usr/share/man/man1/cmtk-describe.1 - mv debian/cmtk/usr/share/man/man1/cmtk-reorient.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-reorient.1 - mv debian/cmtk/usr/share/man/man1/cmtk-sba.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-sba.1 - mv debian/cmtk/usr/share/man/man1/cmtk-sbai.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-sbai.1 - mv debian/cmtk/usr/share/man/man1/cmtk-sequence.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-sequence.1 - mv debian/cmtk/usr/share/man/man1/cmtk-similarity.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-similarity.1 - mv debian/cmtk/usr/share/man/man1/cmtk-split.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-split.1 - chmod 0644 -- debian/cmtk/usr/share/man/man1/cmtk-reorient.1 debian/cmtk/usr/share/man/man1/cmtk-sba.1 debian/cmtk/usr/share/man/man1/cmtk-sbai.1 debian/cmtk/usr/share/man/man1/cmtk-sequence.1 debian/cmtk/usr/share/man/man1/cmtk-similarity.1 debian/cmtk/usr/share/man/man1/cmtk-split.1 - mv debian/cmtk/usr/share/man/man1/cmtk-fib2image.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-fib2image.1 - mv debian/cmtk/usr/share/man/man1/cmtk-fibxform.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-fibxform.1 - mv debian/cmtk/usr/share/man/man1/cmtk-film.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-film.1 - mv debian/cmtk/usr/share/man/man1/cmtk-filter.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-filter.1 - mv debian/cmtk/usr/share/man/man1/cmtk-fit_affine_dfield.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-fit_affine_dfield.1 - mv debian/cmtk/usr/share/man/man1/cmtk-fit_affine_xform.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-fit_affine_xform.1 - chmod 0644 -- debian/cmtk/usr/share/man/man1/cmtk-fib2image.1 debian/cmtk/usr/share/man/man1/cmtk-fibxform.1 debian/cmtk/usr/share/man/man1/cmtk-film.1 debian/cmtk/usr/share/man/man1/cmtk-filter.1 debian/cmtk/usr/share/man/man1/cmtk-fit_affine_dfield.1 debian/cmtk/usr/share/man/man1/cmtk-fit_affine_xform.1 + mv debian/cmtk/usr/share/man/man1/cmtk-asegment.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-asegment.1 + mv debian/cmtk/usr/share/man/man1/cmtk-asegment_sri24.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-asegment_sri24.1 + mv debian/cmtk/usr/share/man/man1/cmtk-average_affine.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-average_affine.1 + mv debian/cmtk/usr/share/man/man1/cmtk-average_images.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-average_images.1 + mv debian/cmtk/usr/share/man/man1/cmtk-average_labels.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-average_labels.1 + mv debian/cmtk/usr/share/man/man1/cmtk-avg_adm.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-avg_adm.1 + chmod 0644 -- debian/cmtk/usr/share/man/man1/cmtk-asegment.1 debian/cmtk/usr/share/man/man1/cmtk-asegment_sri24.1 debian/cmtk/usr/share/man/man1/cmtk-average_affine.1 debian/cmtk/usr/share/man/man1/cmtk-average_images.1 debian/cmtk/usr/share/man/man1/cmtk-average_labels.1 debian/cmtk/usr/share/man/man1/cmtk-avg_adm.1 mv debian/cmtk/usr/share/man/man1/cmtk-destripe.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-destripe.1 mv debian/cmtk/usr/share/man/man1/cmtk-detect_adni_phantom.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-detect_adni_phantom.1 mv debian/cmtk/usr/share/man/man1/cmtk-detect_spheres_matched_filter.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-detect_spheres_matched_filter.1 @@ -6122,6 +6136,27 @@ mv debian/cmtk/usr/share/man/man1/cmtk-dwi_mask_bad_slices.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-dwi_mask_bad_slices.1 mv debian/cmtk/usr/share/man/man1/cmtk-epiunwarp.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-epiunwarp.1 chmod 0644 -- debian/cmtk/usr/share/man/man1/cmtk-destripe.1 debian/cmtk/usr/share/man/man1/cmtk-detect_adni_phantom.1 debian/cmtk/usr/share/man/man1/cmtk-detect_spheres_matched_filter.1 debian/cmtk/usr/share/man/man1/cmtk-dof2mat.1 debian/cmtk/usr/share/man/man1/cmtk-dwi_mask_bad_slices.1 debian/cmtk/usr/share/man/man1/cmtk-epiunwarp.1 + mv debian/cmtk/usr/share/man/man1/cmtk-imagemath.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-imagemath.1 + mv debian/cmtk/usr/share/man/man1/cmtk-interleaved_bad_slices.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-interleaved_bad_slices.1 + mv debian/cmtk/usr/share/man/man1/cmtk-iterative_shape_averaging.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-iterative_shape_averaging.1 + mv debian/cmtk/usr/share/man/man1/cmtk-jidb.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-jidb.1 + mv debian/cmtk/usr/share/man/man1/cmtk-levelset.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-levelset.1 + mv debian/cmtk/usr/share/man/man1/cmtk-lmsba.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-lmsba.1 + chmod 0644 -- debian/cmtk/usr/share/man/man1/cmtk-imagemath.1 debian/cmtk/usr/share/man/man1/cmtk-interleaved_bad_slices.1 debian/cmtk/usr/share/man/man1/cmtk-iterative_shape_averaging.1 debian/cmtk/usr/share/man/man1/cmtk-jidb.1 debian/cmtk/usr/share/man/man1/cmtk-levelset.1 debian/cmtk/usr/share/man/man1/cmtk-lmsba.1 + mv debian/cmtk/usr/share/man/man1/cmtk-fib2image.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-fib2image.1 + mv debian/cmtk/usr/share/man/man1/cmtk-fibxform.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-fibxform.1 + mv debian/cmtk/usr/share/man/man1/cmtk-film.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-film.1 + mv debian/cmtk/usr/share/man/man1/cmtk-filter.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-filter.1 + mv debian/cmtk/usr/share/man/man1/cmtk-fit_affine_dfield.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-fit_affine_dfield.1 + mv debian/cmtk/usr/share/man/man1/cmtk-fit_affine_xform.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-fit_affine_xform.1 + chmod 0644 -- debian/cmtk/usr/share/man/man1/cmtk-fib2image.1 debian/cmtk/usr/share/man/man1/cmtk-fibxform.1 debian/cmtk/usr/share/man/man1/cmtk-film.1 debian/cmtk/usr/share/man/man1/cmtk-filter.1 debian/cmtk/usr/share/man/man1/cmtk-fit_affine_dfield.1 debian/cmtk/usr/share/man/man1/cmtk-fit_affine_xform.1 + mv debian/cmtk/usr/share/man/man1/cmtk-concat_affine.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-concat_affine.1 + mv debian/cmtk/usr/share/man/man1/cmtk-convert_warp.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-convert_warp.1 + mv debian/cmtk/usr/share/man/man1/cmtk-convertx.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-convertx.1 + mv debian/cmtk/usr/share/man/man1/cmtk-dbtool.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-dbtool.1 + mv debian/cmtk/usr/share/man/man1/cmtk-dcm2image.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-dcm2image.1 + mv debian/cmtk/usr/share/man/man1/cmtk-describe.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-describe.1 + chmod 0644 -- debian/cmtk/usr/share/man/man1/cmtk-concat_affine.1 debian/cmtk/usr/share/man/man1/cmtk-convert_warp.1 debian/cmtk/usr/share/man/man1/cmtk-convertx.1 debian/cmtk/usr/share/man/man1/cmtk-dbtool.1 debian/cmtk/usr/share/man/man1/cmtk-dcm2image.1 debian/cmtk/usr/share/man/man1/cmtk-describe.1 mv debian/cmtk/usr/share/man/man1/cmtk-mk_adni_phantom.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-mk_adni_phantom.1 mv debian/cmtk/usr/share/man/man1/cmtk-mk_analyze_hdr.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-mk_analyze_hdr.1 mv debian/cmtk/usr/share/man/man1/cmtk-mk_nifti_hdr.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-mk_nifti_hdr.1 @@ -6136,41 +6171,6 @@ mv debian/cmtk/usr/share/man/man1/cmtk-glm.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-glm.1 mv debian/cmtk/usr/share/man/man1/cmtk-gmm.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-gmm.1 chmod 0644 -- debian/cmtk/usr/share/man/man1/cmtk-fit_affine_xform_landmarks.1 debian/cmtk/usr/share/man/man1/cmtk-fit_spline_dfield.1 debian/cmtk/usr/share/man/man1/cmtk-fit_spline_xform.1 debian/cmtk/usr/share/man/man1/cmtk-geomatch.1 debian/cmtk/usr/share/man/man1/cmtk-glm.1 debian/cmtk/usr/share/man/man1/cmtk-gmm.1 - mv debian/cmtk/usr/share/man/man1/cmtk-imagemath.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-imagemath.1 - mv debian/cmtk/usr/share/man/man1/cmtk-interleaved_bad_slices.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-interleaved_bad_slices.1 - mv debian/cmtk/usr/share/man/man1/cmtk-iterative_shape_averaging.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-iterative_shape_averaging.1 - mv debian/cmtk/usr/share/man/man1/cmtk-jidb.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-jidb.1 - mv debian/cmtk/usr/share/man/man1/cmtk-levelset.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-levelset.1 - mv debian/cmtk/usr/share/man/man1/cmtk-lmsba.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-lmsba.1 - chmod 0644 -- debian/cmtk/usr/share/man/man1/cmtk-imagemath.1 debian/cmtk/usr/share/man/man1/cmtk-interleaved_bad_slices.1 debian/cmtk/usr/share/man/man1/cmtk-iterative_shape_averaging.1 debian/cmtk/usr/share/man/man1/cmtk-jidb.1 debian/cmtk/usr/share/man/man1/cmtk-levelset.1 debian/cmtk/usr/share/man/man1/cmtk-lmsba.1 - mv debian/cmtk/usr/share/man/man1/cmtk-statistics.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-statistics.1 - mv debian/cmtk/usr/share/man/man1/cmtk-stream_pixels.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-stream_pixels.1 - mv debian/cmtk/usr/share/man/man1/cmtk-streamxform.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-streamxform.1 - mv debian/cmtk/usr/share/man/man1/cmtk-sympl.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-sympl.1 - mv debian/cmtk/usr/share/man/man1/cmtk-symplx.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-symplx.1 - mv debian/cmtk/usr/share/man/man1/cmtk-ttest.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-ttest.1 - chmod 0644 -- debian/cmtk/usr/share/man/man1/cmtk-statistics.1 debian/cmtk/usr/share/man/man1/cmtk-stream_pixels.1 debian/cmtk/usr/share/man/man1/cmtk-streamxform.1 debian/cmtk/usr/share/man/man1/cmtk-sympl.1 debian/cmtk/usr/share/man/man1/cmtk-symplx.1 debian/cmtk/usr/share/man/man1/cmtk-ttest.1 - mv debian/cmtk/usr/share/man/man1/cmtk-warp.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-warp.1 - mv debian/cmtk/usr/share/man/man1/cmtk-warp2ps.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-warp2ps.1 - mv debian/cmtk/usr/share/man/man1/cmtk-warpx.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-warpx.1 - mv debian/cmtk/usr/share/man/man1/cmtk-xform2dfield.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-xform2dfield.1 - mv debian/cmtk/usr/share/man/man1/cmtk-xform2itk.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-xform2itk.1 - mv debian/cmtk/usr/share/man/man1/cmtk-xform2scalar.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-xform2scalar.1 - chmod 0644 -- debian/cmtk/usr/share/man/man1/cmtk-warp.1 debian/cmtk/usr/share/man/man1/cmtk-warp2ps.1 debian/cmtk/usr/share/man/man1/cmtk-warpx.1 debian/cmtk/usr/share/man/man1/cmtk-xform2dfield.1 debian/cmtk/usr/share/man/man1/cmtk-xform2itk.1 debian/cmtk/usr/share/man/man1/cmtk-xform2scalar.1 - mv debian/cmtk/usr/share/man/man1/cmtk-asegment.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-asegment.1 - mv debian/cmtk/usr/share/man/man1/cmtk-asegment_sri24.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-asegment_sri24.1 - mv debian/cmtk/usr/share/man/man1/cmtk-average_affine.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-average_affine.1 - mv debian/cmtk/usr/share/man/man1/cmtk-average_images.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-average_images.1 - mv debian/cmtk/usr/share/man/man1/cmtk-average_labels.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-average_labels.1 - mv debian/cmtk/usr/share/man/man1/cmtk-avg_adm.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-avg_adm.1 - chmod 0644 -- debian/cmtk/usr/share/man/man1/cmtk-asegment.1 debian/cmtk/usr/share/man/man1/cmtk-asegment_sri24.1 debian/cmtk/usr/share/man/man1/cmtk-average_affine.1 debian/cmtk/usr/share/man/man1/cmtk-average_images.1 debian/cmtk/usr/share/man/man1/cmtk-average_labels.1 debian/cmtk/usr/share/man/man1/cmtk-avg_adm.1 - mv debian/cmtk/usr/share/man/man1/cmtk-gregxform.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-gregxform.1 - mv debian/cmtk/usr/share/man/man1/cmtk-groupwise_affine.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-groupwise_affine.1 - mv debian/cmtk/usr/share/man/man1/cmtk-groupwise_init.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-groupwise_init.1 - mv debian/cmtk/usr/share/man/man1/cmtk-groupwise_warp.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-groupwise_warp.1 - mv debian/cmtk/usr/share/man/man1/cmtk-hausdorff.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-hausdorff.1 - mv debian/cmtk/usr/share/man/man1/cmtk-histogram.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-histogram.1 - chmod 0644 -- debian/cmtk/usr/share/man/man1/cmtk-gregxform.1 debian/cmtk/usr/share/man/man1/cmtk-groupwise_affine.1 debian/cmtk/usr/share/man/man1/cmtk-groupwise_init.1 debian/cmtk/usr/share/man/man1/cmtk-groupwise_warp.1 debian/cmtk/usr/share/man/man1/cmtk-hausdorff.1 debian/cmtk/usr/share/man/man1/cmtk-histogram.1 mv debian/cmtk/usr/share/man/man1/cmtk-unsplit.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-unsplit.1 mv debian/cmtk/usr/share/man/man1/cmtk-unwarp_image_phantom.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-unwarp_image_phantom.1 mv debian/cmtk/usr/share/man/man1/cmtk-vol2csv.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-vol2csv.1 @@ -6178,6 +6178,13 @@ mv debian/cmtk/usr/share/man/man1/cmtk-volume_reconstruction.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-volume_reconstruction.1 mv debian/cmtk/usr/share/man/man1/cmtk-vtkxform.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-vtkxform.1 chmod 0644 -- debian/cmtk/usr/share/man/man1/cmtk-unsplit.1 debian/cmtk/usr/share/man/man1/cmtk-unwarp_image_phantom.1 debian/cmtk/usr/share/man/man1/cmtk-vol2csv.1 debian/cmtk/usr/share/man/man1/cmtk-volume_injection.1 debian/cmtk/usr/share/man/man1/cmtk-volume_reconstruction.1 debian/cmtk/usr/share/man/man1/cmtk-vtkxform.1 + mv debian/cmtk/usr/share/man/man1/cmtk-lsba.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-lsba.1 + mv debian/cmtk/usr/share/man/man1/cmtk-lvote.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-lvote.1 + mv debian/cmtk/usr/share/man/man1/cmtk-make_initial_affine.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-make_initial_affine.1 + mv debian/cmtk/usr/share/man/man1/cmtk-mat2dof.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-mat2dof.1 + mv debian/cmtk/usr/share/man/man1/cmtk-mcaffine.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-mcaffine.1 + mv debian/cmtk/usr/share/man/man1/cmtk-mcwarp.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-mcwarp.1 + chmod 0644 -- debian/cmtk/usr/share/man/man1/cmtk-lsba.1 debian/cmtk/usr/share/man/man1/cmtk-lvote.1 debian/cmtk/usr/share/man/man1/cmtk-make_initial_affine.1 debian/cmtk/usr/share/man/man1/cmtk-mat2dof.1 debian/cmtk/usr/share/man/man1/cmtk-mcaffine.1 debian/cmtk/usr/share/man/man1/cmtk-mcwarp.1 mv debian/cmtk/usr/share/man/man1/cmtk-probe.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-probe.1 mv debian/cmtk/usr/share/man/man1/cmtk-pxsearch.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-pxsearch.1 mv debian/cmtk/usr/share/man/man1/cmtk-reformatx.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-reformatx.1 @@ -6185,6 +6192,34 @@ mv debian/cmtk/usr/share/man/man1/cmtk-registrationx.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-registrationx.1 mv debian/cmtk/usr/share/man/man1/cmtk-regress.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-regress.1 chmod 0644 -- debian/cmtk/usr/share/man/man1/cmtk-probe.1 debian/cmtk/usr/share/man/man1/cmtk-pxsearch.1 debian/cmtk/usr/share/man/man1/cmtk-reformatx.1 debian/cmtk/usr/share/man/man1/cmtk-registration.1 debian/cmtk/usr/share/man/man1/cmtk-registrationx.1 debian/cmtk/usr/share/man/man1/cmtk-regress.1 + mv debian/cmtk/usr/share/man/man1/cmtk-warp.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-warp.1 + mv debian/cmtk/usr/share/man/man1/cmtk-warp2ps.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-warp2ps.1 + mv debian/cmtk/usr/share/man/man1/cmtk-warpx.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-warpx.1 + mv debian/cmtk/usr/share/man/man1/cmtk-xform2dfield.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-xform2dfield.1 + mv debian/cmtk/usr/share/man/man1/cmtk-xform2itk.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-xform2itk.1 + mv debian/cmtk/usr/share/man/man1/cmtk-xform2scalar.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-xform2scalar.1 + chmod 0644 -- debian/cmtk/usr/share/man/man1/cmtk-warp.1 debian/cmtk/usr/share/man/man1/cmtk-warp2ps.1 debian/cmtk/usr/share/man/man1/cmtk-warpx.1 debian/cmtk/usr/share/man/man1/cmtk-xform2dfield.1 debian/cmtk/usr/share/man/man1/cmtk-xform2itk.1 debian/cmtk/usr/share/man/man1/cmtk-xform2scalar.1 + mv debian/cmtk/usr/share/man/man1/cmtk-statistics.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-statistics.1 + mv debian/cmtk/usr/share/man/man1/cmtk-stream_pixels.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-stream_pixels.1 + mv debian/cmtk/usr/share/man/man1/cmtk-streamxform.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-streamxform.1 + mv debian/cmtk/usr/share/man/man1/cmtk-sympl.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-sympl.1 + mv debian/cmtk/usr/share/man/man1/cmtk-symplx.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-symplx.1 + mv debian/cmtk/usr/share/man/man1/cmtk-ttest.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-ttest.1 + chmod 0644 -- debian/cmtk/usr/share/man/man1/cmtk-statistics.1 debian/cmtk/usr/share/man/man1/cmtk-stream_pixels.1 debian/cmtk/usr/share/man/man1/cmtk-streamxform.1 debian/cmtk/usr/share/man/man1/cmtk-sympl.1 debian/cmtk/usr/share/man/man1/cmtk-symplx.1 debian/cmtk/usr/share/man/man1/cmtk-ttest.1 + mv debian/cmtk/usr/share/man/man1/cmtk-gregxform.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-gregxform.1 + mv debian/cmtk/usr/share/man/man1/cmtk-groupwise_affine.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-groupwise_affine.1 + mv debian/cmtk/usr/share/man/man1/cmtk-groupwise_init.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-groupwise_init.1 + mv debian/cmtk/usr/share/man/man1/cmtk-groupwise_warp.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-groupwise_warp.1 + mv debian/cmtk/usr/share/man/man1/cmtk-hausdorff.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-hausdorff.1 + mv debian/cmtk/usr/share/man/man1/cmtk-histogram.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-histogram.1 + chmod 0644 -- debian/cmtk/usr/share/man/man1/cmtk-gregxform.1 debian/cmtk/usr/share/man/man1/cmtk-groupwise_affine.1 debian/cmtk/usr/share/man/man1/cmtk-groupwise_init.1 debian/cmtk/usr/share/man/man1/cmtk-groupwise_warp.1 debian/cmtk/usr/share/man/man1/cmtk-hausdorff.1 debian/cmtk/usr/share/man/man1/cmtk-histogram.1 + mv debian/cmtk/usr/share/man/man1/cmtk-reorient.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-reorient.1 + mv debian/cmtk/usr/share/man/man1/cmtk-sba.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-sba.1 + mv debian/cmtk/usr/share/man/man1/cmtk-sbai.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-sbai.1 + mv debian/cmtk/usr/share/man/man1/cmtk-sequence.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-sequence.1 + mv debian/cmtk/usr/share/man/man1/cmtk-similarity.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-similarity.1 + mv debian/cmtk/usr/share/man/man1/cmtk-split.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-split.1 + chmod 0644 -- debian/cmtk/usr/share/man/man1/cmtk-reorient.1 debian/cmtk/usr/share/man/man1/cmtk-sba.1 debian/cmtk/usr/share/man/man1/cmtk-sbai.1 debian/cmtk/usr/share/man/man1/cmtk-sequence.1 debian/cmtk/usr/share/man/man1/cmtk-similarity.1 debian/cmtk/usr/share/man/man1/cmtk-split.1 make[1]: Leaving directory '/build/cmtk-3.3.1p1+dfsg' dh_perl dh_link @@ -6756,26 +6791,12 @@ dh_shlibdeps install -d debian/cmtk/DEBIAN dpkg-shlibdeps -Tdebian/cmtk.substvars debian/cmtk/usr/lib/cmtk/libNrrdIO.so debian/cmtk/usr/lib/cmtk/libcmtkBase.so debian/cmtk/usr/lib/cmtk/libcmtkIO.so debian/cmtk/usr/lib/cmtk/libcmtkMxml.so debian/cmtk/usr/lib/cmtk/libcmtkNumerics.so debian/cmtk/usr/lib/cmtk/libcmtkRecon.so debian/cmtk/usr/lib/cmtk/libcmtkRegistration.so debian/cmtk/usr/lib/cmtk/libcmtkSegmentation.so debian/cmtk/usr/lib/cmtk/libcmtkSystem.so debian/cmtk/usr/lib/cmtk/bin/asegment debian/cmtk/usr/lib/cmtk/bin/asegment_sri24 debian/cmtk/usr/lib/cmtk/bin/average_affine debian/cmtk/usr/lib/cmtk/bin/average_images debian/cmtk/usr/lib/cmtk/bin/average_labels debian/cmtk/usr/lib/cmtk/bin/avg_adm debian/cmtk/usr/lib/cmtk/bin/concat_affine debian/cmtk/usr/lib/cmtk/bin/convert_warp debian/cmtk/usr/lib/cmtk/bin/convertx debian/cmtk/usr/lib/cmtk/bin/dbtool debian/cmtk/usr/lib/cmtk/bin/dcm2image debian/cmtk/usr/lib/cmtk/bin/describe debian/cmtk/usr/lib/cmtk/bin/destripe debian/cmtk/usr/lib/cmtk/bin/detect_adni_phantom debian/cmtk/usr/lib/cmtk/bin/detect_spheres_matched_filter debian/cmtk/usr/lib/cmtk/bin/dof2mat debian/cmtk/usr/lib/cmtk/bin/dwi_mask_bad_slices debian/cmtk/usr/lib/cmtk/bin/epiunwarp debian/cmtk/usr/lib/cmtk/bin/fib2image debian/cmtk/usr/lib/cmtk/bin/fibxform debian/cmtk/usr/lib/cmtk/bin/film debian/cmtk/usr/lib/cmtk/bin/filter debian/cmtk/usr/lib/cmtk/bin/fit_affine_dfield debian/cmtk/usr/lib/cmtk/bin/fit_affine_xform debian/cmtk/usr/lib/cmtk/bin/fit_affine_xform_landmarks debian/cmtk/usr/lib/cmtk/bin/fit_spline_dfield debian/cmtk/usr/lib/cmtk/bin/fit_spline_xform debian/cmtk/usr/lib/cmtk/bin/geomatch debian/cmtk/usr/lib/cmtk/bin/glm debian/cmtk/usr/lib/cmtk/bin/gmm debian/cmtk/usr/lib/cmtk/bin/gregxform debian/cmtk/usr/lib/cmtk/bin/groupwise_affine debian/cmtk/usr/lib/cmtk/bin/groupwise_init debian/cmtk/usr/lib/cmtk/bin/groupwise_warp debian/cmtk/usr/lib/cmtk/bin/hausdorff debian/cmtk/usr/lib/cmtk/bin/histogram debian/cmtk/usr/lib/cmtk/bin/imagemath debian/cmtk/usr/lib/cmtk/bin/interleaved_bad_slices debian/cmtk/usr/lib/cmtk/bin/jidb debian/cmtk/usr/lib/cmtk/bin/levelset debian/cmtk/usr/lib/cmtk/bin/lmsba debian/cmtk/usr/lib/cmtk/bin/lsba debian/cmtk/usr/lib/cmtk/bin/lvote debian/cmtk/usr/lib/cmtk/bin/make_initial_affine debian/cmtk/usr/lib/cmtk/bin/mat2dof debian/cmtk/usr/lib/cmtk/bin/mcaffine debian/cmtk/usr/lib/cmtk/bin/mcwarp debian/cmtk/usr/lib/cmtk/bin/mk_adni_phantom debian/cmtk/usr/lib/cmtk/bin/mk_analyze_hdr debian/cmtk/usr/lib/cmtk/bin/mk_nifti_hdr debian/cmtk/usr/lib/cmtk/bin/mk_phantom_3d debian/cmtk/usr/lib/cmtk/bin/mrbias debian/cmtk/usr/lib/cmtk/bin/overlap debian/cmtk/usr/lib/cmtk/bin/probe debian/cmtk/usr/lib/cmtk/bin/pxsearch debian/cmtk/usr/lib/cmtk/bin/reformatx debian/cmtk/usr/lib/cmtk/bin/registration debian/cmtk/usr/lib/cmtk/bin/registrationx debian/cmtk/usr/lib/cmtk/bin/regress debian/cmtk/usr/lib/cmtk/bin/reorient debian/cmtk/usr/lib/cmtk/bin/sba debian/cmtk/usr/lib/cmtk/bin/sbai debian/cmtk/usr/lib/cmtk/bin/sequence debian/cmtk/usr/lib/cmtk/bin/similarity debian/cmtk/usr/lib/cmtk/bin/split debian/cmtk/usr/lib/cmtk/bin/statistics debian/cmtk/usr/lib/cmtk/bin/stream_pixels debian/cmtk/usr/lib/cmtk/bin/streamxform debian/cmtk/usr/lib/cmtk/bin/sympl debian/cmtk/usr/lib/cmtk/bin/symplx debian/cmtk/usr/lib/cmtk/bin/ttest debian/cmtk/usr/lib/cmtk/bin/unsplit debian/cmtk/usr/lib/cmtk/bin/unwarp_image_phantom debian/cmtk/usr/lib/cmtk/bin/vol2csv debian/cmtk/usr/lib/cmtk/bin/volume_injection debian/cmtk/usr/lib/cmtk/bin/volume_reconstruction debian/cmtk/usr/lib/cmtk/bin/vtkxform debian/cmtk/usr/lib/cmtk/bin/warp debian/cmtk/usr/lib/cmtk/bin/warp2ps debian/cmtk/usr/lib/cmtk/bin/warpx debian/cmtk/usr/lib/cmtk/bin/xform2dfield debian/cmtk/usr/lib/cmtk/bin/xform2itk debian/cmtk/usr/lib/cmtk/bin/xform2scalar -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSegmentation.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSegmentation.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' -dpkg-shlibdeps: warning: debian/cmtk/usr/lib/cmtk/libcmtkMxml.so contains an unresolvable reference to symbol pthread_setspecific: it's probably a plugin -dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' @@ -6786,6 +6807,8 @@ dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSegmentation.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSegmentation.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRegistration.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRegistration.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' @@ -6796,6 +6819,10 @@ dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRegistration.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRegistration.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSegmentation.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSegmentation.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' @@ -6812,6 +6839,8 @@ dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRegistration.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRegistration.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' @@ -6820,6 +6849,8 @@ dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSegmentation.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSegmentation.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' @@ -6828,6 +6859,8 @@ dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRegistration.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRegistration.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' @@ -6836,10 +6869,6 @@ dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRegistration.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRegistration.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' @@ -6852,8 +6881,8 @@ dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRegistration.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSegmentation.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSegmentation.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRegistration.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRegistration.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' @@ -6872,6 +6901,8 @@ dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSegmentation.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSegmentation.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' @@ -6882,16 +6913,18 @@ dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSegmentation.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSegmentation.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRegistration.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRegistration.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkNumerics.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkNumerics.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRegistration.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRegistration.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' @@ -6900,20 +6933,16 @@ dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRegistration.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRegistration.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRegistration.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRegistration.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSegmentation.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSegmentation.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' @@ -6922,8 +6951,6 @@ dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSegmentation.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSegmentation.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRegistration.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRegistration.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' @@ -6934,14 +6961,20 @@ dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libNrrdIO.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libNrrdIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRegistration.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRegistration.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSegmentation.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSegmentation.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' @@ -6952,16 +6985,18 @@ dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRegistration.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRegistration.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRecon.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRecon.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkNumerics.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkNumerics.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' @@ -6972,9 +7007,12 @@ dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkNumerics.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkNumerics.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' -dpkg-shlibdeps: warning: debian/cmtk/usr/lib/cmtk/libNrrdIO.so contains an unresolvable reference to symbol sqrt: it's probably a plugin +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRegistration.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRegistration.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' @@ -6993,10 +7031,6 @@ dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRegistration.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRegistration.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' @@ -7005,8 +7039,6 @@ dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSegmentation.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSegmentation.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' @@ -7033,6 +7065,7 @@ dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' +dpkg-shlibdeps: warning: debian/cmtk/usr/lib/cmtk/libNrrdIO.so contains an unresolvable reference to symbol sqrt: it's probably a plugin dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRegistration.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRegistration.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' @@ -7051,6 +7084,8 @@ dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSegmentation.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSegmentation.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' @@ -7059,12 +7094,16 @@ dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSegmentation.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSegmentation.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRegistration.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRegistration.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' @@ -7073,20 +7112,14 @@ dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRecon.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRecon.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkNumerics.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkNumerics.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSegmentation.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSegmentation.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' @@ -7095,6 +7128,10 @@ dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRegistration.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRegistration.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' @@ -7103,14 +7140,16 @@ dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRegistration.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRegistration.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkNumerics.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkNumerics.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' @@ -7123,10 +7162,6 @@ dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRegistration.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkNumerics.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkNumerics.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' @@ -7139,12 +7174,14 @@ dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRegistration.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRegistration.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRecon.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRecon.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkNumerics.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkNumerics.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' @@ -7157,18 +7194,16 @@ dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRegistration.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRegistration.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSegmentation.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSegmentation.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkNumerics.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkNumerics.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRegistration.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRegistration.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' @@ -7177,20 +7212,14 @@ dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRegistration.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRegistration.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkNumerics.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkNumerics.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRegistration.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRegistration.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' @@ -7199,14 +7228,10 @@ dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRecon.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRecon.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkNumerics.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkNumerics.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' @@ -7219,10 +7244,14 @@ dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRecon.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRecon.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkNumerics.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkNumerics.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' @@ -7237,12 +7266,6 @@ dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkNumerics.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkNumerics.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' @@ -7251,8 +7274,12 @@ dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRegistration.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRegistration.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkNumerics.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkNumerics.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' @@ -7271,8 +7298,6 @@ dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRegistration.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRegistration.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' @@ -7301,12 +7326,12 @@ dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libNrrdIO.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libNrrdIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' @@ -7317,6 +7342,10 @@ dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSegmentation.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSegmentation.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRegistration.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRegistration.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' @@ -7341,8 +7370,6 @@ dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSegmentation.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSegmentation.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' @@ -7351,8 +7378,6 @@ dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSegmentation.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSegmentation.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' @@ -7369,8 +7394,6 @@ dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRegistration.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRegistration.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' @@ -7379,6 +7402,12 @@ dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRegistration.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRegistration.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' +dpkg-shlibdeps: warning: debian/cmtk/usr/lib/cmtk/libcmtkMxml.so contains an unresolvable reference to symbol pthread_setspecific: it's probably a plugin +dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' @@ -7387,14 +7416,10 @@ dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRecon.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRecon.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkNumerics.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkNumerics.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' @@ -7411,12 +7436,8 @@ dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSegmentation.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSegmentation.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRegistration.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRegistration.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' @@ -7425,18 +7446,16 @@ dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRegistration.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRegistration.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkNumerics.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkNumerics.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRegistration.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRegistration.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' @@ -7469,6 +7488,8 @@ dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSegmentation.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSegmentation.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' @@ -7477,10 +7498,14 @@ dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRecon.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRecon.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkNumerics.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkNumerics.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' @@ -7493,10 +7518,18 @@ dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRecon.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRecon.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkNumerics.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkNumerics.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' @@ -7507,6 +7540,8 @@ dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkNumerics.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkNumerics.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' @@ -7519,7 +7554,7 @@ dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/cmtk/usr/lib/cmtk/bin/sequence debian/cmtk/usr/lib/cmtk/libcmtkBase.so debian/cmtk/usr/lib/cmtk/bin/mk_analyze_hdr debian/cmtk/usr/lib/cmtk/bin/mk_nifti_hdr were not linked against libfftw3_threads.so.3 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/cmtk/usr/lib/cmtk/bin/sequence debian/cmtk/usr/lib/cmtk/libcmtkBase.so debian/cmtk/usr/lib/cmtk/bin/mk_nifti_hdr debian/cmtk/usr/lib/cmtk/bin/mk_analyze_hdr were not linked against libfftw3_threads.so.3 (they use none of the library's symbols) dh_installdeb find debian/cmtk/etc -type f -printf '/etc/%P ' | LC_ALL=C sort >> debian/cmtk/DEBIAN/conffiles @@ -7543,10 +7578,10 @@ chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/DEBIAN/md5sums chown 0:0 -- debian/.debhelper/cmtk/dbgsym-root/DEBIAN/md5sums dh_builddeb - dpkg-deb --build debian/.debhelper/cmtk/dbgsym-root .. dpkg-deb --build debian/cmtk .. -dpkg-deb: building package 'cmtk' in '../cmtk_3.3.1p1+dfsg-2_amd64.deb'. + dpkg-deb --build debian/.debhelper/cmtk/dbgsym-root .. dpkg-deb: building package 'cmtk-dbgsym' in '../cmtk-dbgsym_3.3.1p1+dfsg-2_amd64.deb'. +dpkg-deb: building package 'cmtk' in '../cmtk_3.3.1p1+dfsg-2_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../cmtk_3.3.1p1+dfsg-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -7554,12 +7589,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3894293/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3894293/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/166702 and its subdirectories -I: Current time: Fri Jan 27 14:32:28 -12 2023 -I: pbuilder-time-stamp: 1674873148 +I: removing directory /srv/workspace/pbuilder/3894293 and its subdirectories +I: Current time: Sun Dec 26 10:16:45 +14 2021 +I: pbuilder-time-stamp: 1640463405