Diff of the two buildlogs: -- --- b1/build.log 2023-04-11 18:51:05.795733244 +0000 +++ b2/build.log 2023-04-11 18:54:03.301783726 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon May 13 13:11:44 -12 2024 -I: pbuilder-time-stamp: 1715649104 +I: Current time: Wed Apr 12 08:51:09 +14 2023 +I: pbuilder-time-stamp: 1681239069 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -16,7 +16,7 @@ I: copying [./spoa_4.0.8.orig.tar.gz] I: copying [./spoa_4.0.8-1.debian.tar.xz] I: Extracting source -gpgv: Signature made Tue Nov 29 08:41:56 2022 -12 +gpgv: Signature made Wed Nov 30 10:41:56 2022 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -30,11 +30,20 @@ dpkg-source: info: applying shared_and_static.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/28582/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/27448/tmp/hooks/D01_modify_environment starting +debug: Running on codethink12-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +lrwxrwxrwx 1 root root 4 Jan 6 03:20 /bin/sh -> dash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/27448/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/27448/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME='pbuilder2' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' @@ -44,38 +53,38 @@ IFS=' ' LANG='C' - LANGUAGE='en_US:en' + LANGUAGE='nl_BE:nl' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' + PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' - PPID='28582' + PPID='27448' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.RipunGcK/pbuilderrc_HY3G --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.RipunGcK/b1 --logfile b1/build.log spoa_4.0.8-1.dsc' + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.RipunGcK/pbuilderrc_qPMJ --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.RipunGcK/b2 --logfile b2/build.log --extrapackages usrmerge spoa_4.0.8-1.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' + TZ='/usr/share/zoneinfo/Etc/GMT-14' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a - Linux codethink13-arm64 4.15.0-208-generic #220-Ubuntu SMP Mon Mar 20 14:28:12 UTC 2023 aarch64 GNU/Linux + Linux i-capture-the-hostname 4.15.0-208-generic #220-Ubuntu SMP Mon Mar 20 14:28:12 UTC 2023 aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 13 04:48 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/28582/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Apr 10 00:26 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/27448/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -182,7 +191,7 @@ Get: 55 http://deb.debian.org/debian bookworm/main arm64 libcereal-dev arm64 1.3.2+dfsg-4 [221 kB] Get: 56 http://deb.debian.org/debian bookworm/main arm64 libgtest-dev arm64 1.12.1-0.2 [231 kB] Get: 57 http://deb.debian.org/debian bookworm/main arm64 libsimde-dev all 0.7.4~rc2-2 [377 kB] -Fetched 32.3 MB in 3s (11.2 MB/s) +Fetched 32.3 MB in 1s (36.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19616 files and directories currently installed.) @@ -424,8 +433,17 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +usrmerge is already the newest version (35). +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/spoa-4.0.8/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../spoa_4.0.8-1_source.changes +I: user script /srv/workspace/pbuilder/27448/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +I: user script /srv/workspace/pbuilder/27448/tmp/hooks/A99_set_merged_usr finished +hostname: Temporary failure in name resolution +I: Running cd /build/spoa-4.0.8/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../spoa_4.0.8-1_source.changes dpkg-buildpackage: info: source package spoa dpkg-buildpackage: info: source version 4.0.8-1 dpkg-buildpackage: info: source distribution unstable @@ -554,47 +572,47 @@ [----------] 19 tests from SpoaTest [ RUN ] SpoaTest.Clear -[ OK ] SpoaTest.Clear (342 ms) +[ OK ] SpoaTest.Clear (369 ms) [ RUN ] SpoaTest.Local -[ OK ] SpoaTest.Local (179 ms) +[ OK ] SpoaTest.Local (191 ms) [ RUN ] SpoaTest.LocalAffine -[ OK ] SpoaTest.LocalAffine (249 ms) +[ OK ] SpoaTest.LocalAffine (267 ms) [ RUN ] SpoaTest.LocalConvex -[ OK ] SpoaTest.LocalConvex (393 ms) +[ OK ] SpoaTest.LocalConvex (422 ms) [ RUN ] SpoaTest.LocalWithQualities -[ OK ] SpoaTest.LocalWithQualities (181 ms) +[ OK ] SpoaTest.LocalWithQualities (194 ms) [ RUN ] SpoaTest.LocalAffineWithQualities -[ OK ] SpoaTest.LocalAffineWithQualities (246 ms) +[ OK ] SpoaTest.LocalAffineWithQualities (266 ms) [ RUN ] SpoaTest.LocalConvexWithQualities -[ OK ] SpoaTest.LocalConvexWithQualities (393 ms) +[ OK ] SpoaTest.LocalConvexWithQualities (419 ms) [ RUN ] SpoaTest.Global -[ OK ] SpoaTest.Global (185 ms) +[ OK ] SpoaTest.Global (193 ms) [ RUN ] SpoaTest.GlobalAffine -[ OK ] SpoaTest.GlobalAffine (246 ms) +[ OK ] SpoaTest.GlobalAffine (265 ms) [ RUN ] SpoaTest.GlobalConvex -[ OK ] SpoaTest.GlobalConvex (380 ms) +[ OK ] SpoaTest.GlobalConvex (412 ms) [ RUN ] SpoaTest.GlobalWithQualities -[ OK ] SpoaTest.GlobalWithQualities (182 ms) +[ OK ] SpoaTest.GlobalWithQualities (196 ms) [ RUN ] SpoaTest.GlobalAffineWithQualities -[ OK ] SpoaTest.GlobalAffineWithQualities (247 ms) +[ OK ] SpoaTest.GlobalAffineWithQualities (269 ms) [ RUN ] SpoaTest.GlobalConvexWithQualities -[ OK ] SpoaTest.GlobalConvexWithQualities (383 ms) +[ OK ] SpoaTest.GlobalConvexWithQualities (414 ms) [ RUN ] SpoaTest.SemiGlobal -[ OK ] SpoaTest.SemiGlobal (175 ms) +[ OK ] SpoaTest.SemiGlobal (185 ms) [ RUN ] SpoaTest.SemiGlobalAffine -[ OK ] SpoaTest.SemiGlobalAffine (242 ms) +[ OK ] SpoaTest.SemiGlobalAffine (264 ms) [ RUN ] SpoaTest.SemiGlobalConvex -[ OK ] SpoaTest.SemiGlobalConvex (386 ms) +[ OK ] SpoaTest.SemiGlobalConvex (409 ms) [ RUN ] SpoaTest.SemiGlobalWithQualities -[ OK ] SpoaTest.SemiGlobalWithQualities (168 ms) +[ OK ] SpoaTest.SemiGlobalWithQualities (185 ms) [ RUN ] SpoaTest.SemiGlobalAffineWithQualities -[ OK ] SpoaTest.SemiGlobalAffineWithQualities (239 ms) +[ OK ] SpoaTest.SemiGlobalAffineWithQualities (264 ms) [ RUN ] SpoaTest.SemiGlobalConvexWithQualities -[ OK ] SpoaTest.SemiGlobalConvexWithQualities (376 ms) -[----------] 19 tests from SpoaTest (5204 ms total) +[ OK ] SpoaTest.SemiGlobalConvexWithQualities (412 ms) +[----------] 19 tests from SpoaTest (5608 ms total) [----------] Global test environment tear-down -[==========] 22 tests from 2 test suites ran. (5204 ms total) +[==========] 22 tests from 2 test suites ran. (5608 ms total) [ PASSED ] 22 tests. `find . -name spoa | grep bin` test/data/sample.fastq.gz >Consensus LN:i:495 @@ -673,11 +691,11 @@ dpkg-gencontrol: warning: Depends field of package libspoa-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--no-parallel dh_builddeb -O--no-parallel -dpkg-deb: building package 'spoa-dbgsym' in '../spoa-dbgsym_4.0.8-1_arm64.deb'. dpkg-deb: building package 'spoa' in '../spoa_4.0.8-1_arm64.deb'. +dpkg-deb: building package 'spoa-dbgsym' in '../spoa-dbgsym_4.0.8-1_arm64.deb'. dpkg-deb: building package 'libspoa-dev' in '../libspoa-dev_4.0.8-1_arm64.deb'. -dpkg-deb: building package 'libspoa7.0.0-dbgsym' in '../libspoa7.0.0-dbgsym_4.0.8-1_arm64.deb'. dpkg-deb: building package 'libspoa7.0.0' in '../libspoa7.0.0_4.0.8-1_arm64.deb'. +dpkg-deb: building package 'libspoa7.0.0-dbgsym' in '../libspoa7.0.0-dbgsym_4.0.8-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../spoa_4.0.8-1_arm64.buildinfo dpkg-genchanges --build=binary -O../spoa_4.0.8-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -685,12 +703,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/27448/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/27448/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/28582 and its subdirectories -I: Current time: Mon May 13 13:14:04 -12 2024 -I: pbuilder-time-stamp: 1715649244 +I: removing directory /srv/workspace/pbuilder/27448 and its subdirectories +I: Current time: Wed Apr 12 08:54:02 +14 2023 +I: pbuilder-time-stamp: 1681239242