Diff of the two buildlogs: -- --- b1/build.log 2023-04-10 20:14:14.996011123 +0000 +++ b2/build.log 2023-04-10 20:17:47.128925291 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Apr 10 08:06:06 -12 2023 -I: pbuilder-time-stamp: 1681157166 +I: Current time: Mon May 13 16:37:18 +14 2024 +I: pbuilder-time-stamp: 1715567838 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -16,7 +16,7 @@ I: copying [./sambamba_1.0+dfsg.orig.tar.xz] I: copying [./sambamba_1.0+dfsg-1.debian.tar.xz] I: Extracting source -gpgv: Signature made Wed Jan 18 23:30:28 2023 -12 +gpgv: Signature made Fri Jan 20 01:30:28 2023 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -28,11 +28,20 @@ dpkg-source: info: applying 2to3.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/11426/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/29582/tmp/hooks/D01_modify_environment starting +debug: Running on codethink9-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +lrwxrwxrwx 1 root root 4 Jan 6 2023 /bin/sh -> dash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/29582/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/29582/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME='pbuilder2' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' @@ -42,38 +51,38 @@ IFS=' ' LANG='C' - LANGUAGE='en_US:en' + LANGUAGE='nl_BE:nl' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' + PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' - PPID='11426' + PPID='29582' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.WvUsql4p/pbuilderrc_i9lP --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.WvUsql4p/b1 --logfile b1/build.log sambamba_1.0+dfsg-1.dsc' + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.WvUsql4p/pbuilderrc_fcgI --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.WvUsql4p/b2 --logfile b2/build.log --extrapackages usrmerge sambamba_1.0+dfsg-1.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' + TZ='/usr/share/zoneinfo/Etc/GMT-14' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a - Linux codethink14-arm64 4.15.0-208-generic #220-Ubuntu SMP Mon Mar 20 14:28:12 UTC 2023 aarch64 GNU/Linux + Linux i-capture-the-hostname 4.15.0-208-generic #220-Ubuntu SMP Mon Mar 20 14:28:12 UTC 2023 aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Apr 9 22:24 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/11426/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 12 06:48 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/29582/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -221,7 +230,7 @@ Get: 79 http://deb.debian.org/debian bookworm/main arm64 pkgconf arm64 1.8.1-1 [25.9 kB] Get: 80 http://deb.debian.org/debian bookworm/main arm64 pkg-config arm64 1.8.1-1 [13.7 kB] Get: 81 http://deb.debian.org/debian bookworm/main arm64 shunit2 all 2.1.8-3 [33.6 kB] -Fetched 69.2 MB in 3s (19.9 MB/s) +Fetched 69.2 MB in 4s (16.1 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19616 files and directories currently installed.) @@ -561,8 +570,17 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +usrmerge is already the newest version (35). +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/sambamba-1.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../sambamba_1.0+dfsg-1_source.changes +I: user script /srv/workspace/pbuilder/29582/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +I: user script /srv/workspace/pbuilder/29582/tmp/hooks/A99_set_merged_usr finished +hostname: Temporary failure in name resolution +I: Running cd /build/sambamba-1.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../sambamba_1.0+dfsg-1_source.changes dpkg-buildpackage: info: source package sambamba dpkg-buildpackage: info: source version 1.0+dfsg-1 dpkg-buildpackage: info: source distribution unstable @@ -648,35 +666,35 @@ [16/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_sort.d.o.deps -of=sambamba.p/sambamba_sort.d.o -c ../sambamba/sort.d [17/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_view_alignmentrangeprocessor.d.o.deps -of=sambamba.p/sambamba_utils_view_alignmentrangeprocessor.d.o -c ../sambamba/utils/view/alignmentrangeprocessor.d [18/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_common_tmpdir.d.o.deps -of=sambamba.p/sambamba_utils_common_tmpdir.d.o -c ../sambamba/utils/common/tmpdir.d -[19/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_depth.d.o.deps -of=sambamba.p/sambamba_depth.d.o -c ../sambamba/depth.d +[19/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_validate.d.o.deps -of=sambamba.p/sambamba_validate.d.o -c ../sambamba/validate.d +[20/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_markdup.d.o.deps -of=sambamba.p/sambamba_markdup.d.o -c ../sambamba/markdup.d +[21/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_base.d.o.deps -of=sambamba.p/BioD_bio_core_base.d.o -c ../BioD/bio/core/base.d +[22/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_depth.d.o.deps -of=sambamba.p/sambamba_depth.d.o -c ../sambamba/depth.d ../BioD/bio/std/hts/bam/md/parse.d(49): Deprecation: returning `this._cached_front` escapes a reference to parameter `this` ../BioD/bio/std/hts/bam/md/parse.d(48): perhaps annotate the function with `return` ../BioD/bio/std/hts/bam/md/parse.d(53): Deprecation: returning `this._cached_back` escapes a reference to parameter `this` ../BioD/bio/std/hts/bam/md/parse.d(52): perhaps annotate the function with `return` -[20/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_validate.d.o.deps -of=sambamba.p/sambamba_validate.d.o -c ../sambamba/validate.d -[21/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_base.d.o.deps -of=sambamba.p/BioD_bio_core_base.d.o -c ../BioD/bio/core/base.d -[22/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_common_progressbar.d.o.deps -of=sambamba.p/sambamba_utils_common_progressbar.d.o -c ../sambamba/utils/common/progressbar.d -[23/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_bgzf_chunk.d.o.deps -of=sambamba.p/BioD_bio_core_bgzf_chunk.d.o -c ../BioD/bio/core/bgzf/chunk.d -[24/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_bgzf_block.d.o.deps -of=sambamba.p/BioD_bio_core_bgzf_block.d.o -c ../BioD/bio/core/bgzf/block.d -[25/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_markdup.d.o.deps -of=sambamba.p/sambamba_markdup.d.o -c ../sambamba/markdup.d -[26/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_bgzf_constants.d.o.deps -of=sambamba.p/BioD_bio_core_bgzf_constants.d.o -c ../BioD/bio/core/bgzf/constants.d +[23/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_bgzf_block.d.o.deps -of=sambamba.p/BioD_bio_core_bgzf_block.d.o -c ../BioD/bio/core/bgzf/block.d +[24/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD 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-makedeps=sambamba.p/BioD_bio_core_sequence.d.o.deps -of=sambamba.p/BioD_bio_core_sequence.d.o -c ../BioD/bio/core/sequence.d -[37/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_algo.d.o.deps -of=sambamba.p/BioD_bio_core_utils_algo.d.o -c ../BioD/bio/core/utils/algo.d +[36/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_algo.d.o.deps -of=sambamba.p/BioD_bio_core_utils_algo.d.o -c ../BioD/bio/core/utils/algo.d +[37/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_bgzf_inputstream.d.o.deps -of=sambamba.p/BioD_bio_core_bgzf_inputstream.d.o -c ../BioD/bio/core/bgzf/inputstream.d [38/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_exception.d.o.deps -of=sambamba.p/BioD_bio_core_utils_exception.d.o -c ../BioD/bio/core/utils/exception.d -[39/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_format.d.o.deps -of=sambamba.p/BioD_bio_core_utils_format.d.o -c ../BioD/bio/core/utils/format.d +[39/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_sequence.d.o.deps -of=sambamba.p/BioD_bio_core_sequence.d.o -c ../BioD/bio/core/sequence.d [40/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_memoize.d.o.deps -of=sambamba.p/BioD_bio_core_utils_memoize.d.o -c ../BioD/bio/core/utils/memoize.d -[41/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_bgzf_inputstream.d.o.deps -of=sambamba.p/BioD_bio_core_bgzf_inputstream.d.o -c ../BioD/bio/core/bgzf/inputstream.d -[42/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_outbuffer.d.o.deps -of=sambamba.p/BioD_bio_core_utils_outbuffer.d.o -c ../BioD/bio/core/utils/outbuffer.d -[43/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_bylinefast.d.o.deps -of=sambamba.p/BioD_bio_core_utils_bylinefast.d.o -c ../BioD/bio/core/utils/bylinefast.d +[41/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_format.d.o.deps -of=sambamba.p/BioD_bio_core_utils_format.d.o -c ../BioD/bio/core/utils/format.d +[42/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_bylinefast.d.o.deps -of=sambamba.p/BioD_bio_core_utils_bylinefast.d.o -c ../BioD/bio/core/utils/bylinefast.d +[43/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_outbuffer.d.o.deps -of=sambamba.p/BioD_bio_core_utils_outbuffer.d.o -c ../BioD/bio/core/utils/outbuffer.d [44/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_range.d.o.deps -of=sambamba.p/BioD_bio_core_utils_range.d.o -c ../BioD/bio/core/utils/range.d [45/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_roundbuf.d.o.deps -of=sambamba.p/BioD_bio_core_utils_roundbuf.d.o -c ../BioD/bio/core/utils/roundbuf.d [46/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_switchendianness.d.o.deps -of=sambamba.p/BioD_bio_core_utils_switchendianness.d.o -c ../BioD/bio/core/utils/switchendianness.d @@ -685,15 +703,15 @@ ../BioD/bio/core/utils/stream.d(32): Deprecation: switch case fallthrough - use 'goto case;' if intended [49/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_bam_header.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_bam_header.d.o -c ../BioD/bio/std/experimental/hts/bam/header.d [50/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_tmpfile.d.o.deps -of=sambamba.p/BioD_bio_core_utils_tmpfile.d.o -c ../BioD/bio/core/utils/tmpfile.d -[51/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_bam_writer.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_bam_writer.d.o -c ../BioD/bio/std/experimental/hts/bam/writer.d -[52/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_view_headerserializer.d.o.deps -of=sambamba.p/sambamba_utils_view_headerserializer.d.o -c ../sambamba/utils/view/headerserializer.d +[51/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_view_headerserializer.d.o.deps -of=sambamba.p/sambamba_utils_view_headerserializer.d.o -c ../sambamba/utils/view/headerserializer.d +[52/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_bam_writer.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_bam_writer.d.o -c ../BioD/bio/std/experimental/hts/bam/writer.d [53/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_constants.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_constants.d.o -c ../BioD/bio/std/experimental/hts/constants.d -[54/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_bgzf_writer.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_bgzf_writer.d.o -c ../BioD/bio/std/experimental/hts/bgzf_writer.d +[54/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_hashing.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_hashing.d.o -c ../BioD/bio/std/experimental/hts/hashing.d [55/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_logger.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_logger.d.o -c ../BioD/bio/std/experimental/hts/logger.d -[56/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_hashing.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_hashing.d.o -c ../BioD/bio/std/experimental/hts/hashing.d -[57/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_reads.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_reads.d.o -c ../BioD/bio/std/experimental/hts/reads.d -[58/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_pileup.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_pileup.d.o -c ../BioD/bio/std/experimental/hts/pileup.d -[59/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_common_filtering.d.o.deps -of=sambamba.p/sambamba_utils_common_filtering.d.o -c ../sambamba/utils/common/filtering.d +[56/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_common_filtering.d.o.deps -of=sambamba.p/sambamba_utils_common_filtering.d.o -c ../sambamba/utils/common/filtering.d +[57/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_pileup.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_pileup.d.o -c ../BioD/bio/std/experimental/hts/pileup.d +[58/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_reads.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_reads.d.o -c ../BioD/bio/std/experimental/hts/reads.d +[59/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_bgzf_writer.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_bgzf_writer.d.o -c ../BioD/bio/std/experimental/hts/bgzf_writer.d [60/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_unpack.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_unpack.d.o -c ../BioD/bio/std/experimental/hts/unpack.d [61/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_file_fastq.d.o.deps -of=sambamba.p/BioD_bio_std_file_fastq.d.o -c ../BioD/bio/std/file/fastq.d [62/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_genotype_maf.d.o.deps -of=sambamba.p/BioD_bio_std_genotype_maf.d.o -c ../BioD/bio/std/genotype/maf.d @@ -705,55 +723,50 @@ [66/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_bam_reader.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_bam_reader.d.o -c ../BioD/bio/std/experimental/hts/bam/reader.d [67/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_baifile.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_baifile.d.o -c ../BioD/bio/std/hts/bam/baifile.d [68/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_baseinfo.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_baseinfo.d.o -c ../BioD/bio/std/hts/bam/baseinfo.d -[69/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_cigar.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_cigar.d.o -c ../BioD/bio/std/hts/bam/cigar.d -[70/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_constants.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_constants.d.o -c 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-makedeps=sambamba.p/BioD_bio_std_hts_bam_md_reconstruct.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_md_reconstruct.d.o -c ../BioD/bio/std/hts/bam/md/reconstruct.d -[75/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_md_parse.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_md_parse.d.o -c ../BioD/bio/std/hts/bam/md/parse.d +[69/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_view.d.o.deps -of=sambamba.p/sambamba_view.d.o -c ../sambamba/view.d +[70/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_cigar.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_cigar.d.o -c ../BioD/bio/std/hts/bam/cigar.d +[71/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_constants.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_constants.d.o -c ../BioD/bio/std/hts/bam/constants.d +[72/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_file_fasta.d.o.deps -of=sambamba.p/BioD_bio_std_file_fasta.d.o -c ../BioD/bio/std/file/fasta.d +[73/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_file_fai.d.o.deps -of=sambamba.p/BioD_bio_std_file_fai.d.o -c ../BioD/bio/std/file/fai.d +[74/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_md_core.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_md_core.d.o -c ../BioD/bio/std/hts/bam/md/core.d +[75/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_md_reconstruct.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_md_reconstruct.d.o -c ../BioD/bio/std/hts/bam/md/reconstruct.d +[76/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_md_parse.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_md_parse.d.o -c ../BioD/bio/std/hts/bam/md/parse.d ../BioD/bio/std/hts/bam/md/parse.d(49): Deprecation: returning `this._cached_front` escapes a reference to parameter `this` ../BioD/bio/std/hts/bam/md/parse.d(48): perhaps annotate the function with `return` ../BioD/bio/std/hts/bam/md/parse.d(53): Deprecation: returning `this._cached_back` escapes a reference to parameter `this` ../BioD/bio/std/hts/bam/md/parse.d(52): perhaps annotate the function with `return` -[76/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_file_fasta.d.o.deps -of=sambamba.p/BioD_bio_std_file_fasta.d.o -c ../BioD/bio/std/file/fasta.d [77/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_pileup.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_pileup.d.o -c ../BioD/bio/std/hts/bam/pileup.d [78/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_genotype_snp.d.o.deps -of=sambamba.p/BioD_bio_std_genotype_snp.d.o -c ../BioD/bio/std/genotype/snp.d -[79/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_pileup.d.o.deps -of=sambamba.p/sambamba_pileup.d.o -c ../sambamba/pileup.d +[79/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_bai_indexing.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_bai_indexing.d.o -c ../BioD/bio/std/hts/bam/bai/indexing.d +[80/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_common_queryparser.d.o.deps -of=sambamba.p/sambamba_utils_common_queryparser.d.o -c ../sambamba/utils/common/queryparser.d +[81/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_pileup.d.o.deps -of=sambamba.p/sambamba_pileup.d.o -c ../sambamba/pileup.d ../BioD/bio/std/hts/bam/md/parse.d(49): Deprecation: returning `this._cached_front` escapes a reference to parameter `this` ../BioD/bio/std/hts/bam/md/parse.d(48): perhaps annotate the function with `return` ../BioD/bio/std/hts/bam/md/parse.d(53): Deprecation: returning `this._cached_back` escapes a reference to parameter `this` ../BioD/bio/std/hts/bam/md/parse.d(52): perhaps annotate the function with `return` -[80/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_readrange.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_readrange.d.o -c ../BioD/bio/std/hts/bam/readrange.d -[81/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_common_queryparser.d.o.deps -of=sambamba.p/sambamba_utils_common_queryparser.d.o -c ../sambamba/utils/common/queryparser.d -[82/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_bai_indexing.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_bai_indexing.d.o -c ../BioD/bio/std/hts/bam/bai/indexing.d +[82/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_randomaccessmanager.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_randomaccessmanager.d.o -c ../BioD/bio/std/hts/bam/randomaccessmanager.d [83/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_region.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_region.d.o -c ../BioD/bio/std/hts/bam/region.d -[84/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_referenceinfo.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_referenceinfo.d.o -c ../BioD/bio/std/hts/bam/referenceinfo.d -[85/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_splitter.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_splitter.d.o -c ../BioD/bio/std/hts/bam/splitter.d -[86/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_reference.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_reference.d.o -c ../BioD/bio/std/hts/bam/reference.d -[87/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_randomaccessmanager.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_randomaccessmanager.d.o -c ../BioD/bio/std/hts/bam/randomaccessmanager.d -[88/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_validation_samheader.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_validation_samheader.d.o -c ../BioD/bio/std/hts/bam/validation/samheader.d -[89/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_md_operation.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_md_operation.d.o -c ../BioD/bio/std/hts/bam/md/operation.d +[84/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_readrange.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_readrange.d.o -c ../BioD/bio/std/hts/bam/readrange.d +[85/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_referenceinfo.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_referenceinfo.d.o -c ../BioD/bio/std/hts/bam/referenceinfo.d +[86/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_splitter.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_splitter.d.o -c ../BioD/bio/std/hts/bam/splitter.d +[87/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_md_operation.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_md_operation.d.o -c ../BioD/bio/std/hts/bam/md/operation.d ../BioD/bio/std/hts/bam/md/operation.d(57): Deprecation: returning `this._match` escapes a reference to parameter `this` ../BioD/bio/std/hts/bam/md/operation.d(56): perhaps annotate the function with `return` ../BioD/bio/std/hts/bam/md/operation.d(72): Deprecation: returning `this._deletion` escapes a reference to parameter `this` ../BioD/bio/std/hts/bam/md/operation.d(71): perhaps annotate the function with `return` +[88/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_reference.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_reference.d.o -c ../BioD/bio/std/hts/bam/reference.d +[89/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_validation_samheader.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_validation_samheader.d.o -c ../BioD/bio/std/hts/bam/validation/samheader.d [90/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_iontorrent_flowindex.d.o.deps -of=sambamba.p/BioD_bio_std_hts_iontorrent_flowindex.d.o -c ../BioD/bio/std/hts/iontorrent/flowindex.d [91/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_writer.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_writer.d.o -c ../BioD/bio/std/hts/bam/writer.d [92/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_reader.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_reader.d.o -c ../BioD/bio/std/hts/bam/reader.d -[93/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_iontorrent_flowcall.d.o.deps -of=sambamba.p/BioD_bio_std_hts_iontorrent_flowcall.d.o -c ../BioD/bio/std/hts/iontorrent/flowcall.d -[94/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_read.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_read.d.o -c ../BioD/bio/std/hts/bam/read.d +[93/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_read.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_read.d.o -c ../BioD/bio/std/hts/bam/read.d ../BioD/bio/std/hts/bam/md/parse.d(49): Deprecation: returning `this._cached_front` escapes a reference to parameter `this` ../BioD/bio/std/hts/bam/md/parse.d(48): perhaps annotate the function with `return` ../BioD/bio/std/hts/bam/md/parse.d(53): Deprecation: returning `this._cached_back` escapes a reference to parameter `this` ../BioD/bio/std/hts/bam/md/parse.d(52): perhaps annotate the function with `return` +[94/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_iontorrent_flowcall.d.o.deps -of=sambamba.p/BioD_bio_std_hts_iontorrent_flowcall.d.o -c ../BioD/bio/std/hts/iontorrent/flowcall.d [95/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_sam_reader.d.o.deps -of=sambamba.p/BioD_bio_std_hts_sam_reader.d.o -c ../BioD/bio/std/hts/sam/reader.d -[96/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_snpcallers_maq.d.o.deps -of=sambamba.p/BioD_bio_std_hts_snpcallers_maq.d.o -c ../BioD/bio/std/hts/snpcallers/maq.d -[97/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_snpcallers_simple.d.o.deps -of=sambamba.p/BioD_bio_std_hts_snpcallers_simple.d.o -c ../BioD/bio/std/hts/snpcallers/simple.d -[98/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_utils_array.d.o.deps -of=sambamba.p/BioD_bio_std_hts_utils_array.d.o -c ../BioD/bio/std/hts/utils/array.d -[99/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_tagvalue.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_tagvalue.d.o -c ../BioD/bio/std/hts/bam/tagvalue.d -[100/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_utils_graph.d.o.deps -of=sambamba.p/BioD_bio_std_hts_utils_graph.d.o -c ../BioD/bio/std/hts/utils/graph.d -[101/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_sam_utils_recordparser.d.o.deps -of=sambamba.p/BioD_bio_std_hts_sam_utils_recordparser.d.o -c ../BioD/bio/std/hts/sam/utils/recordparser.d +[96/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_sam_utils_recordparser.d.o.deps -of=sambamba.p/BioD_bio_std_hts_sam_utils_recordparser.d.o -c ../BioD/bio/std/hts/sam/utils/recordparser.d sam_alignment.rl(51): Warning: statement is not reachable sam_alignment.rl(52): Warning: statement is not reachable sam_alignment.rl(59): Warning: statement is not reachable @@ -790,19 +803,20 @@ sam_alignment.rl(221): Warning: statement is not reachable sam_alignment.rl(250): Warning: statement is not reachable sam_alignment.rl(407): Warning: statement is not reachable -[102/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_maf_block.d.o.deps -of=sambamba.p/BioD_bio_std_maf_block.d.o -c ../BioD/bio/std/maf/block.d -[103/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_utils_value.d.o.deps -of=sambamba.p/BioD_bio_std_hts_utils_value.d.o -c ../BioD/bio/std/hts/utils/value.d +[97/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_snpcallers_maq.d.o.deps -of=sambamba.p/BioD_bio_std_hts_snpcallers_maq.d.o -c ../BioD/bio/std/hts/snpcallers/maq.d +[98/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_utils_array.d.o.deps -of=sambamba.p/BioD_bio_std_hts_utils_array.d.o -c ../BioD/bio/std/hts/utils/array.d +[99/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_snpcallers_simple.d.o.deps -of=sambamba.p/BioD_bio_std_hts_snpcallers_simple.d.o -c ../BioD/bio/std/hts/snpcallers/simple.d +[100/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_utils_graph.d.o.deps -of=sambamba.p/BioD_bio_std_hts_utils_graph.d.o -c ../BioD/bio/std/hts/utils/graph.d +[101/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_multireader.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_multireader.d.o -c ../BioD/bio/std/hts/bam/multireader.d +[102/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_tagvalue.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_tagvalue.d.o -c ../BioD/bio/std/hts/bam/tagvalue.d +[103/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_maf_block.d.o.deps -of=sambamba.p/BioD_bio_std_maf_block.d.o -c ../BioD/bio/std/maf/block.d [104/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_thirdparty_msgpack.d.o.deps -of=sambamba.p/BioD_bio_std_hts_thirdparty_msgpack.d.o -c ../BioD/bio/std/hts/thirdparty/msgpack.d [105/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_range_splitter.d.o.deps -of=sambamba.p/BioD_bio_std_range_splitter.d.o -c ../BioD/bio/std/range/splitter.d -[106/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_sff_constants.d.o.deps -of=sambamba.p/BioD_bio_std_sff_constants.d.o -c ../BioD/bio/std/sff/constants.d -[107/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_sff_index.d.o.deps -of=sambamba.p/BioD_bio_std_sff_index.d.o -c ../BioD/bio/std/sff/index.d -[108/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_sff_read.d.o.deps -of=sambamba.p/BioD_bio_std_sff_read.d.o -c ../BioD/bio/std/sff/read.d -[109/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_multireader.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_multireader.d.o -c ../BioD/bio/std/hts/bam/multireader.d -[110/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_validation_alignment.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_validation_alignment.d.o -c ../BioD/bio/std/hts/bam/validation/alignment.d -[111/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_maf_parser.d.o.deps -of=sambamba.p/BioD_bio_std_maf_parser.d.o -c ../BioD/bio/std/maf/parser.d -[112/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_sff_utils_roundup.d.o.deps -of=sambamba.p/BioD_bio_std_sff_utils_roundup.d.o -c ../BioD/bio/std/sff/utils/roundup.d -[113/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_sam_header.d.o.deps -of=sambamba.p/BioD_bio_std_hts_sam_header.d.o -c ../BioD/bio/std/hts/sam/header.d -[114/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_sam_utils_fastrecordparser.d.o.deps -of=sambamba.p/BioD_bio_std_hts_sam_utils_fastrecordparser.d.o -c ../BioD/bio/std/hts/sam/utils/fastrecordparser.d +[106/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_utils_value.d.o.deps -of=sambamba.p/BioD_bio_std_hts_utils_value.d.o -c ../BioD/bio/std/hts/utils/value.d +[107/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_sff_constants.d.o.deps -of=sambamba.p/BioD_bio_std_sff_constants.d.o -c ../BioD/bio/std/sff/constants.d +[108/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_sff_index.d.o.deps -of=sambamba.p/BioD_bio_std_sff_index.d.o -c ../BioD/bio/std/sff/index.d +[109/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_sff_read.d.o.deps -of=sambamba.p/BioD_bio_std_sff_read.d.o -c ../BioD/bio/std/sff/read.d +[110/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_sam_utils_fastrecordparser.d.o.deps -of=sambamba.p/BioD_bio_std_hts_sam_utils_fastrecordparser.d.o -c ../BioD/bio/std/hts/sam/utils/fastrecordparser.d sam_alignment.rl(51): Warning: statement is not reachable sam_alignment.rl(59): Warning: statement is not reachable sam_alignment.rl(68): Warning: statement is not reachable @@ -839,6 +853,10 @@ sam_alignment.rl(221): Warning: statement is not reachable sam_alignment.rl(250): Warning: statement is not reachable sam_alignment.rl(407): Warning: statement is not reachable +[111/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_sff_utils_roundup.d.o.deps -of=sambamba.p/BioD_bio_std_sff_utils_roundup.d.o -c ../BioD/bio/std/sff/utils/roundup.d +[112/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_maf_reader.d.o.deps -of=sambamba.p/BioD_bio_std_maf_reader.d.o -c ../BioD/bio/std/maf/reader.d +[113/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_sff_readrange.d.o.deps -of=sambamba.p/BioD_bio_std_sff_readrange.d.o -c ../BioD/bio/std/sff/readrange.d +[114/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_sff_reader.d.o.deps -of=sambamba.p/BioD_bio_std_sff_reader.d.o -c ../BioD/bio/std/sff/reader.d [115/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_undead_doformat.d.o.deps -of=sambamba.p/BioD_contrib_undead_doformat.d.o -c ../BioD/contrib/undead/doformat.d ../BioD/contrib/undead/doformat.d(128): Deprecation: use of imaginary type `ifloat` is deprecated, use `float` instead ../BioD/contrib/undead/doformat.d(129): Deprecation: use of imaginary type `idouble` is deprecated, use `double` instead @@ -846,19 +864,19 @@ ../BioD/contrib/undead/doformat.d(131): Deprecation: use of complex type `cfloat` is deprecated, use `std.complex.Complex!(float)` instead ../BioD/contrib/undead/doformat.d(132): Deprecation: use of complex type `cdouble` is deprecated, use `std.complex.Complex!(double)` instead ../BioD/contrib/undead/doformat.d(133): Deprecation: use of complex type `creal` is deprecated, use `std.complex.Complex!(real)` instead -[116/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_maf_reader.d.o.deps -of=sambamba.p/BioD_bio_std_maf_reader.d.o -c ../BioD/bio/std/maf/reader.d -[117/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_sff_reader.d.o.deps -of=sambamba.p/BioD_bio_std_sff_reader.d.o -c ../BioD/bio/std/sff/reader.d -[118/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_sff_readrange.d.o.deps -of=sambamba.p/BioD_bio_std_sff_readrange.d.o -c ../BioD/bio/std/sff/readrange.d +[116/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_sff_writer.d.o.deps -of=sambamba.p/BioD_bio_std_sff_writer.d.o -c ../BioD/bio/std/sff/writer.d +[117/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_validation_alignment.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_validation_alignment.d.o -c ../BioD/bio/std/hts/bam/validation/alignment.d +[118/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_maf_parser.d.o.deps -of=sambamba.p/BioD_bio_std_maf_parser.d.o -c ../BioD/bio/std/maf/parser.d [119/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_undead_utf.d.o.deps -of=sambamba.p/BioD_contrib_undead_utf.d.o -c ../BioD/contrib/undead/utf.d -[120/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_sff_writer.d.o.deps -of=sambamba.p/BioD_bio_std_sff_writer.d.o -c ../BioD/bio/std/sff/writer.d -[121/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/thirdparty_mergesort.d.o.deps -of=sambamba.p/thirdparty_mergesort.d.o -c ../thirdparty/mergesort.d -[122/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_undead_cstream.d.o.deps -of=sambamba.p/BioD_contrib_undead_cstream.d.o -c ../BioD/contrib/undead/cstream.d +[120/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_sam_header.d.o.deps -of=sambamba.p/BioD_bio_std_hts_sam_header.d.o -c ../BioD/bio/std/hts/sam/header.d +[121/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_undead_cstream.d.o.deps -of=sambamba.p/BioD_contrib_undead_cstream.d.o -c ../BioD/contrib/undead/cstream.d +[122/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/thirdparty_mergesort.d.o.deps -of=sambamba.p/thirdparty_mergesort.d.o -c ../thirdparty/mergesort.d [123/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/_build_sambamba-1.0+dfsg_obj-aarch64-linux-gnu_utils_ldc_version_info_.d.o.deps -of=sambamba.p/_build_sambamba-1.0+dfsg_obj-aarch64-linux-gnu_utils_ldc_version_info_.d.o -c /build/sambamba-1.0+dfsg/obj-aarch64-linux-gnu/utils/ldc_version_info_.d [124/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/thirdparty_unstablesort.d.o.deps -of=sambamba.p/thirdparty_unstablesort.d.o -c ../thirdparty/unstablesort.d [125/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/utils_version_.d.o.deps -of=sambamba.p/utils_version_.d.o -c ../utils/version_.d -[126/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/utils_strip_bcf_header.d.o.deps -of=sambamba.p/utils_strip_bcf_header.d.o -c ../utils/strip_bcf_header.d -[127/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_undead_internal_file.d.o.deps -of=sambamba.p/BioD_contrib_undead_internal_file.d.o -c ../BioD/contrib/undead/internal/file.d -[128/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/utils_lz4.d.o.deps -of=sambamba.p/utils_lz4.d.o -c ../utils/lz4.d +[126/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_undead_internal_file.d.o.deps -of=sambamba.p/BioD_contrib_undead_internal_file.d.o -c ../BioD/contrib/undead/internal/file.d +[127/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/utils_lz4.d.o.deps -of=sambamba.p/utils_lz4.d.o -c ../utils/lz4.d +[128/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/utils_strip_bcf_header.d.o.deps -of=sambamba.p/utils_strip_bcf_header.d.o -c ../utils/strip_bcf_header.d [129/131] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_undead_stream.d.o.deps -of=sambamba.p/BioD_contrib_undead_stream.d.o -c ../BioD/contrib/undead/stream.d ../BioD/contrib/undead/stream.d(450): Deprecation: use of imaginary type `ifloat` is deprecated, use `float` instead ../BioD/contrib/undead/stream.d(451): Deprecation: use of imaginary type `idouble` is deprecated, use `double` instead @@ -936,8 +954,8 @@ dh_gencontrol -O--buildsystem=meson dh_md5sums -O--buildsystem=meson dh_builddeb -O--buildsystem=meson -dpkg-deb: building package 'sambamba' in '../sambamba_1.0+dfsg-1_arm64.deb'. dpkg-deb: building package 'sambamba-dbgsym' in '../sambamba-dbgsym_1.0+dfsg-1_arm64.deb'. +dpkg-deb: building package 'sambamba' in '../sambamba_1.0+dfsg-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../sambamba_1.0+dfsg-1_arm64.buildinfo dpkg-genchanges --build=binary -O../sambamba_1.0+dfsg-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -945,12 +963,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/29582/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/29582/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/11426 and its subdirectories -I: Current time: Mon Apr 10 08:14:13 -12 2023 -I: pbuilder-time-stamp: 1681157653 +I: removing directory /srv/workspace/pbuilder/29582 and its subdirectories +I: Current time: Mon May 13 16:40:46 +14 2024 +I: pbuilder-time-stamp: 1715568046