Diff of the two buildlogs: -- --- b1/build.log 2023-04-09 10:25:54.546759246 +0000 +++ b2/build.log 2023-04-09 10:27:09.068281444 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sat Apr 8 22:24:30 -12 2023 -I: pbuilder-time-stamp: 1681035870 +I: Current time: Sun May 12 06:48:57 +14 2024 +I: pbuilder-time-stamp: 1715446137 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -16,7 +16,7 @@ I: copying [./ngmlr_0.2.7+git20210816.a2a31fb+dfsg.orig.tar.gz] I: copying [./ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.debian.tar.xz] I: Extracting source -gpgv: Signature made Thu Oct 14 00:22:50 2021 -12 +gpgv: Signature made Fri Oct 15 02:22:50 2021 +14 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "nilesh@debian.org" gpgv: Can't check signature: No public key @@ -33,11 +33,20 @@ dpkg-source: info: applying fix-arm64.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2106/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/9399/tmp/hooks/D01_modify_environment starting +debug: Running on codethink9-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +lrwxrwxrwx 1 root root 4 Jan 6 2023 /bin/sh -> dash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/9399/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/9399/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME='pbuilder2' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' @@ -47,38 +56,38 @@ IFS=' ' LANG='C' - LANGUAGE='en_US:en' + LANGUAGE='nl_BE:nl' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' + PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' - PPID='2106' + PPID='9399' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.59OjjQ5U/pbuilderrc_Bg21 --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.59OjjQ5U/b1 --logfile b1/build.log ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.dsc' + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.59OjjQ5U/pbuilderrc_Y4y0 --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.59OjjQ5U/b2 --logfile b2/build.log --extrapackages usrmerge ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' + TZ='/usr/share/zoneinfo/Etc/GMT-14' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a - Linux codethink12-arm64 4.15.0-208-generic #220-Ubuntu SMP Mon Mar 20 14:28:12 UTC 2023 aarch64 GNU/Linux + Linux i-capture-the-hostname 4.15.0-208-generic #220-Ubuntu SMP Mon Mar 20 14:28:12 UTC 2023 aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Apr 5 22:25 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2106/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 9 06:47 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/9399/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -187,7 +196,7 @@ Get: 59 http://deb.debian.org/debian bookworm/main arm64 libssw0 arm64 1.1-13 [18.5 kB] Get: 60 http://deb.debian.org/debian bookworm/main arm64 libssw-dev arm64 1.1-13 [21.9 kB] Get: 61 http://deb.debian.org/debian bookworm/main arm64 libtclap-dev arm64 1.2.5-1+b1 [3359 kB] -Fetched 37.8 MB in 2s (20.4 MB/s) +Fetched 37.8 MB in 1s (42.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19616 files and directories currently installed.) @@ -445,8 +454,17 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +usrmerge is already the newest version (35). +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_source.changes +I: user script /srv/workspace/pbuilder/9399/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +I: user script /srv/workspace/pbuilder/9399/tmp/hooks/A99_set_merged_usr finished +hostname: Temporary failure in name resolution +I: Running cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_source.changes dpkg-buildpackage: info: source package ngmlr dpkg-buildpackage: info: source version 0.2.7+git20210816.a2a31fb+dfsg-2 dpkg-buildpackage: info: source distribution unstable @@ -456,10 +474,10 @@ debian/rules clean dh clean --buildsystem cmake debian/rules override_dh_auto_clean -make[1]: Entering directory '/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg' +make[1]: Map '/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg' wordt binnengegaan dh_auto_clean rm -rf bin -make[1]: Leaving directory '/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg' +make[1]: Map '/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg' wordt verlaten dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules binary @@ -519,47 +537,47 @@ -- Build files have been written to: /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu dh_auto_build -O--buildsystem=cmake cd obj-aarch64-linux-gnu && make -j8 "INSTALL=install --strip-program=true" VERBOSE=1 -make[1]: Entering directory '/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu' +make[1]: Map '/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu' wordt binnengegaan /usr/bin/cmake -S/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg -B/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/CMakeFiles /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all -make[2]: Entering directory '/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu' +make[2]: Map '/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu' wordt binnengegaan make -f src/CMakeFiles/ngmlr.dir/build.make src/CMakeFiles/ngmlr.dir/depend make -f src/CMakeFiles/recompile_always.dir/build.make src/CMakeFiles/recompile_always.dir/depend -make[3]: Entering directory '/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu' +make[3]: Map '/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu' wordt binnengegaan cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src/CMakeFiles/recompile_always.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu' +make[3]: Map '/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu' wordt binnengegaan cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src/CMakeFiles/ngmlr.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu' +make[3]: Map '/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu' wordt verlaten +make[3]: Map '/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu' wordt verlaten make -f src/CMakeFiles/recompile_always.dir/build.make src/CMakeFiles/recompile_always.dir/build -make[3]: Entering directory '/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu' -cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && touch /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/main.cpp -make[3]: Leaving directory '/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu' make -f src/CMakeFiles/ngmlr.dir/build.make src/CMakeFiles/ngmlr.dir/build -make[3]: Leaving directory '/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu' -[ 0%] Built target recompile_always -[ 4%] Building CXX object src/CMakeFiles/ngmlr.dir/AlignmentMatrixFast.cpp.o -cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/AlignmentMatrixFast.cpp.o -MF CMakeFiles/ngmlr.dir/AlignmentMatrixFast.cpp.o.d -o CMakeFiles/ngmlr.dir/AlignmentMatrixFast.cpp.o -c 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28%] Building CXX object src/CMakeFiles/ngmlr.dir/ConvexAlignFast.cpp.o +cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/ConvexAlign.cpp.o -MF CMakeFiles/ngmlr.dir/ConvexAlign.cpp.o.d -o CMakeFiles/ngmlr.dir/ConvexAlign.cpp.o -c /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/ConvexAlign.cpp cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/ConvexAlignFast.cpp.o -MF CMakeFiles/ngmlr.dir/ConvexAlignFast.cpp.o.d -o CMakeFiles/ngmlr.dir/ConvexAlignFast.cpp.o -c /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/ConvexAlignFast.cpp [ 32%] Building CXX object src/CMakeFiles/ngmlr.dir/LinearRegression.cpp.o cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/LinearRegression.cpp.o -MF CMakeFiles/ngmlr.dir/LinearRegression.cpp.o.d -o CMakeFiles/ngmlr.dir/LinearRegression.cpp.o -c /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/LinearRegression.cpp [ 36%] Building CXX object src/CMakeFiles/ngmlr.dir/Logging.cpp.o cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/Logging.cpp.o -MF CMakeFiles/ngmlr.dir/Logging.cpp.o.d -o CMakeFiles/ngmlr.dir/Logging.cpp.o -c /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/Logging.cpp -[ 40%] Building CXX object src/CMakeFiles/ngmlr.dir/MappedRead.cpp.o -cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/MappedRead.cpp.o -MF CMakeFiles/ngmlr.dir/MappedRead.cpp.o.d -o CMakeFiles/ngmlr.dir/MappedRead.cpp.o -c /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/MappedRead.cpp [ 44%] Building CXX object src/CMakeFiles/ngmlr.dir/main.cpp.o +[ 44%] Building CXX object src/CMakeFiles/ngmlr.dir/MappedRead.cpp.o +cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/MappedRead.cpp.o -MF CMakeFiles/ngmlr.dir/MappedRead.cpp.o.d -o CMakeFiles/ngmlr.dir/MappedRead.cpp.o -c /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/MappedRead.cpp cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/main.cpp.o -MF CMakeFiles/ngmlr.dir/main.cpp.o.d -o CMakeFiles/ngmlr.dir/main.cpp.o -c /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/main.cpp [ 48%] Building CXX object src/CMakeFiles/ngmlr.dir/NGM.cpp.o cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/NGM.cpp.o -MF CMakeFiles/ngmlr.dir/NGM.cpp.o.d -o CMakeFiles/ngmlr.dir/NGM.cpp.o -c /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/NGM.cpp @@ -569,6 +587,8 @@ /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/main.cpp:56:108: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 56 | Log.Message("ngmlr %s%s (build: %s %s, start: %s)", version.str().c_str(), cDebug ? " debug" : "", __DATE__, __TIME__, currentDateTime().c_str()); | ^~~~~~~~ +[ 52%] Building CXX object src/CMakeFiles/ngmlr.dir/NGMTask.cpp.o +cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/NGMTask.cpp.o -MF CMakeFiles/ngmlr.dir/NGMTask.cpp.o.d -o CMakeFiles/ngmlr.dir/NGMTask.cpp.o -c /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/NGMTask.cpp /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/Logging.cpp: In function ‘std::string add_timestamp(std::string)’: /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/Logging.cpp:118:41: warning: ‘%02i’ directive writing between 2 and 11 bytes into a region of size between 8 and 15 [-Wformat-overflow=] 118 | sprintf(timestamp, "%4i-%02i-%02i_%02i-%02i-%02i", tm->tm_year + 1900, tm->tm_mon + 1, tm->tm_mday, tm->tm_hour, tm->tm_min, @@ -587,8 +607,6 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ -[ 52%] Building CXX object src/CMakeFiles/ngmlr.dir/NGMTask.cpp.o -cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/NGMTask.cpp.o -MF CMakeFiles/ngmlr.dir/NGMTask.cpp.o.d -o CMakeFiles/ngmlr.dir/NGMTask.cpp.o -c /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/NGMTask.cpp [ 56%] Building CXX object src/CMakeFiles/ngmlr.dir/AlignmentBuffer.cpp.o cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/AlignmentBuffer.cpp.o -MF CMakeFiles/ngmlr.dir/AlignmentBuffer.cpp.o.d -o CMakeFiles/ngmlr.dir/AlignmentBuffer.cpp.o -c /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/AlignmentBuffer.cpp [ 60%] Building CXX object src/CMakeFiles/ngmlr.dir/PrefixTable.cpp.o @@ -619,28 +637,28 @@ [100%] Linking CXX executable /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/bin/ngmlr-0.2.8/ngmlr cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngmlr.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ngmlr.dir/AlignmentMatrix.cpp.o CMakeFiles/ngmlr.dir/AlignmentMatrixFast.cpp.o CMakeFiles/ngmlr.dir/ArgParser.cpp.o CMakeFiles/ngmlr.dir/CS.cpp.o CMakeFiles/ngmlr.dir/CSstatic.cpp.o CMakeFiles/ngmlr.dir/ConvexAlign.cpp.o CMakeFiles/ngmlr.dir/ConvexAlignFast.cpp.o CMakeFiles/ngmlr.dir/LinearRegression.cpp.o CMakeFiles/ngmlr.dir/Logging.cpp.o CMakeFiles/ngmlr.dir/MappedRead.cpp.o CMakeFiles/ngmlr.dir/main.cpp.o CMakeFiles/ngmlr.dir/NGM.cpp.o CMakeFiles/ngmlr.dir/NGMTask.cpp.o CMakeFiles/ngmlr.dir/AlignmentBuffer.cpp.o CMakeFiles/ngmlr.dir/PrefixTable.cpp.o CMakeFiles/ngmlr.dir/ReadProvider.cpp.o CMakeFiles/ngmlr.dir/SamParser.cpp.o CMakeFiles/ngmlr.dir/SAMWriter.cpp.o CMakeFiles/ngmlr.dir/SequenceProvider.cpp.o CMakeFiles/ngmlr.dir/OutputReadBuffer.cpp.o CMakeFiles/ngmlr.dir/ScoreBuffer.cpp.o CMakeFiles/ngmlr.dir/StrippedSW.cpp.o CMakeFiles/ngmlr.dir/unix.cpp.o CMakeFiles/ngmlr.dir/unix_threads.cpp.o -o /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/bin/ngmlr-0.2.8/ngmlr -lz -lssw -make[3]: Leaving directory '/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu' +make[3]: Map '/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu' wordt verlaten [100%] Built target ngmlr -make[2]: Leaving directory '/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu' +make[2]: Map '/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu' wordt verlaten /usr/bin/cmake -E cmake_progress_start /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/CMakeFiles 0 -make[1]: Leaving directory '/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu' +make[1]: Map '/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu' wordt verlaten dh_auto_test -O--buildsystem=cmake create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake dh_auto_install --destdir=debian/ngmlr/ -O--buildsystem=cmake cd obj-aarch64-linux-gnu && make -j8 install DESTDIR=/build/ngmlr-0.2.7\+git20210816.a2a31fb\+dfsg/debian/ngmlr AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" -make[1]: Entering directory '/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu' +make[1]: Map '/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu' wordt binnengegaan /usr/bin/cmake -S/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg -B/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall -make[2]: Entering directory '/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu' -make[2]: Nothing to be done for 'preinstall'. -make[2]: Leaving directory '/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu' +make[2]: Map '/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu' wordt binnengegaan +make[2]: Er hoeft niets gedaan te worden voor 'preinstall'. +make[2]: Map '/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu' wordt verlaten Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/debian/ngmlr/usr/bin/ngmlr -make[1]: Leaving directory '/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu' +make[1]: Map '/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu' wordt verlaten dh_installdocs -O--buildsystem=cmake dh_installchangelogs -O--buildsystem=cmake dh_installexamples -O--buildsystem=cmake @@ -660,8 +678,8 @@ dh_gencontrol -O--buildsystem=cmake dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake -dpkg-deb: building package 'ngmlr' in '../ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_arm64.deb'. -dpkg-deb: building package 'ngmlr-dbgsym' in '../ngmlr-dbgsym_0.2.7+git20210816.a2a31fb+dfsg-2_arm64.deb'. +dpkg-deb: pakket 'ngmlr' wordt gebouwd in '../ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_arm64.deb'. +dpkg-deb: pakket 'ngmlr-dbgsym' wordt gebouwd in '../ngmlr-dbgsym_0.2.7+git20210816.a2a31fb+dfsg-2_arm64.deb'. dpkg-genbuildinfo --build=binary -O../ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_arm64.buildinfo dpkg-genchanges --build=binary -O../ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -669,12 +687,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/9399/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/9399/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2106 and its subdirectories -I: Current time: Sat Apr 8 22:25:53 -12 2023 -I: pbuilder-time-stamp: 1681035953 +I: removing directory /srv/workspace/pbuilder/9399 and its subdirectories +I: Current time: Sun May 12 06:50:08 +14 2024 +I: pbuilder-time-stamp: 1715446208