Diff of the two buildlogs: -- --- b1/build.log 2023-04-20 05:34:03.486190592 +0000 +++ b2/build.log 2023-04-20 05:42:02.288944165 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Apr 19 17:29:43 -12 2023 -I: pbuilder-time-stamp: 1681968583 +I: Current time: Thu May 23 01:57:08 +14 2024 +I: pbuilder-time-stamp: 1716379028 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -16,7 +16,7 @@ I: copying [./clipper_2.1.20201109.orig.tar.gz] I: copying [./clipper_2.1.20201109-1.debian.tar.xz] I: Extracting source -gpgv: Signature made Tue Nov 17 04:51:49 2020 -12 +gpgv: Signature made Wed Nov 18 06:51:49 2020 +14 gpgv: using RSA key 772292F6F7AC85FAE041D41EE5F43F9C2734F287 gpgv: issuer "merkys@debian.org" gpgv: Can't check signature: No public key @@ -29,52 +29,84 @@ dpkg-source: info: applying narrowing-conversions.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/25350/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/10505/tmp/hooks/D01_modify_environment starting +debug: Running on codethink9-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 May 23 01:57 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/10505/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/10505/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.15(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' - DISTRIBUTION='bookworm' - HOME='/var/lib/jenkins' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=bookworm + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/var/lib/jenkins + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='25350' - PS1='# ' - PS2='> ' + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=10505 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.mjmDmFcx/pbuilderrc_oh9M --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.mjmDmFcx/b1 --logfile b1/build.log clipper_2.1.20201109-1.dsc' - SUDO_GID='117' - SUDO_UID='110' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - USERNAME='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.16:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.mjmDmFcx/pbuilderrc_rAN4 --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.mjmDmFcx/b2 --logfile b2/build.log --extrapackages usrmerge clipper_2.1.20201109-1.dsc' + SUDO_GID=117 + SUDO_UID=110 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + USERNAME=root + _='I: set' + http_proxy=http://192.168.101.16:3128 I: uname -a - Linux codethink14-arm64 4.15.0-209-generic #220-Ubuntu SMP Tue Mar 21 19:52:44 UTC 2023 aarch64 GNU/Linux + Linux i-capture-the-hostname 4.15.0-209-generic #220-Ubuntu SMP Tue Mar 21 19:52:44 UTC 2023 aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Apr 18 22:25 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/25350/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 21 06:48 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/10505/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -197,7 +229,7 @@ Get: 73 http://deb.debian.org/debian bookworm/main arm64 libmmdb2-dev arm64 2.0.22-1 [92.9 kB] Get: 74 http://deb.debian.org/debian bookworm/main arm64 sfftw2 arm64 2.1.5-6 [199 kB] Get: 75 http://deb.debian.org/debian bookworm/main arm64 sfftw-dev arm64 2.1.5-6 [234 kB] -Fetched 81.0 MB in 2s (46.9 MB/s) +Fetched 81.0 MB in 4s (19.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19616 files and directories currently installed.) @@ -513,8 +545,17 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +usrmerge is already the newest version (35). +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/clipper-2.1.20201109/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../clipper_2.1.20201109-1_source.changes +I: user script /srv/workspace/pbuilder/10505/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +I: user script /srv/workspace/pbuilder/10505/tmp/hooks/A99_set_merged_usr finished +hostname: Temporary failure in name resolution +I: Running cd /build/clipper-2.1.20201109/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../clipper_2.1.20201109-1_source.changes dpkg-buildpackage: info: source package clipper dpkg-buildpackage: info: source version 2.1.20201109-1 dpkg-buildpackage: info: source distribution unstable @@ -878,7 +919,7 @@ /build/clipper-2.1.20201109/dox/clipper_minimol.dox:1: warning: found more than one \mainpage comment block! (first occurrence: /build/clipper-2.1.20201109/dox/clipper.dox, line 1), Skipping current block! /build/clipper-2.1.20201109/dox/clipper_mmdb.dox:1: warning: found more than one \mainpage comment block! (first occurrence: /build/clipper-2.1.20201109/dox/clipper.dox, line 1), Skipping current block! /build/clipper-2.1.20201109/dox/clipper_mmdbold.dox:1: warning: found more than one \mainpage comment block! (first occurrence: /build/clipper-2.1.20201109/dox/clipper.dox, line 1), Skipping current block! -sh: 1: latex: not found +sh: line 1: latex: command not found error: Problems running latex. Check your installation or look for typos in _formulas.tex and check _formulas.log! /build/clipper-2.1.20201109/dox/develop.dox:167: warning: Illegal command \width found as part of a image /build/clipper-2.1.20201109/dox/installation.dox:18: warning: included file install.csh is not found. Check your EXAMPLE_PATH @@ -1000,24 +1041,22 @@ make[3]: Entering directory '/build/clipper-2.1.20201109/clipper' Making all in core make[4]: Entering directory '/build/clipper-2.1.20201109/clipper/core' -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-atomsf.lo `test -f 'atomsf.cpp' || echo './'`atomsf.cpp -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-coords.lo `test -f 'coords.cpp' || echo './'`coords.cpp -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-nxmap_operator.lo `test -f 'nxmap_operator.cpp' || echo './'`nxmap_operator.cpp -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-cell.lo `test -f 'cell.cpp' || echo './'`cell.cpp -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-derivs.lo `test -f 'derivs.cpp' || echo './'`derivs.cpp -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-ramachandran.lo `test -f 'ramachandran.cpp' || echo './'`ramachandran.cpp -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-clipper_instance.lo `test -f 'clipper_instance.cpp' || echo './'`clipper_instance.cpp -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-fftmap.lo `test -f 'fftmap.cpp' || echo './'`fftmap.cpp -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c cell.cpp -fPIC -DPIC -o .libs/libclipper_core_la-cell.o -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c nxmap_operator.cpp -fPIC -DPIC -o .libs/libclipper_core_la-nxmap_operator.o +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-atomsf.lo `test -f 'atomsf.cpp' || echo './'`atomsf.cpp +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-coords.lo `test -f 'coords.cpp' || echo './'`coords.cpp +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-nxmap_operator.lo `test -f 'nxmap_operator.cpp' || echo './'`nxmap_operator.cpp +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-cell.lo `test -f 'cell.cpp' || echo './'`cell.cpp +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-derivs.lo `test -f 'derivs.cpp' || echo './'`derivs.cpp +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-ramachandran.lo `test -f 'ramachandran.cpp' || echo './'`ramachandran.cpp +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-clipper_instance.lo `test -f 'clipper_instance.cpp' || echo './'`clipper_instance.cpp +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-fftmap.lo `test -f 'fftmap.cpp' || echo './'`fftmap.cpp +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c atomsf.cpp -fPIC -DPIC -o .libs/libclipper_core_la-atomsf.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c coords.cpp -fPIC -DPIC -o .libs/libclipper_core_la-coords.o -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c ramachandran.cpp -fPIC -DPIC -o .libs/libclipper_core_la-ramachandran.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c clipper_instance.cpp -fPIC -DPIC -o .libs/libclipper_core_la-clipper_instance.o +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c nxmap_operator.cpp -fPIC -DPIC -o .libs/libclipper_core_la-nxmap_operator.o +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c cell.cpp -fPIC -DPIC -o .libs/libclipper_core_la-cell.o +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c ramachandran.cpp -fPIC -DPIC -o .libs/libclipper_core_la-ramachandran.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c fftmap.cpp -fPIC -DPIC -o .libs/libclipper_core_la-fftmap.o -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c atomsf.cpp -fPIC -DPIC -o .libs/libclipper_core_la-atomsf.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c derivs.cpp -fPIC -DPIC -o .libs/libclipper_core_la-derivs.o -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-resol_basisfn.lo `test -f 'resol_basisfn.cpp' || echo './'`resol_basisfn.cpp -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c resol_basisfn.cpp -fPIC -DPIC -o .libs/libclipper_core_la-resol_basisfn.o atomsf.cpp: In member function 'const clipper::ScatteringFactorsData& clipper::ScatteringFactors::operator[](const clipper::String&) const': atomsf.cpp:438:82: warning: control reaches end of non-void function [-Wreturn-type] 438 | default: Message::message(Message_fatal("unimplemented type")); @@ -1028,67 +1067,69 @@ | ^ atomsf.cpp: In static member function 'static const clipper::ScatteringFactorsData& clipper::ScatteringFactorsTraits::sf(const clipper::String&, int) [with clipper::ScatteringFactorsType TYPE = clipper::SF_ELECTRON]': atomsf.cpp:406:1: warning: control reaches end of non-void function [-Wreturn-type] -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-clipper_memory.lo `test -f 'clipper_memory.cpp' || echo './'`clipper_memory.cpp -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-fftmap_sparse.lo `test -f 'fftmap_sparse.cpp' || echo './'`fftmap_sparse.cpp -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 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+/bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -o minimol/libclipper-minimol.la -rpath /usr/lib/aarch64-linux-gnu minimol/minimol.lo minimol/container_minimol.lo minimol/minimol_data.lo minimol/minimol_io.lo minimol/minimol_seq.lo minimol/minimol_utils.lo core/libclipper-core.la mmdb/libclipper-mmdb.la -lmmdb2 -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/12/crtbeginS.o minimol/.libs/minimol.o minimol/.libs/container_minimol.o minimol/.libs/minimol_data.o minimol/.libs/minimol_io.o minimol/.libs/minimol_seq.o minimol/.libs/minimol_utils.o -Wl,-rpath -Wl,/build/clipper-2.1.20201109/clipper/core/.libs -Wl,-rpath -Wl,/build/clipper-2.1.20201109/clipper/mmdb/.libs core/.libs/libclipper-core.so mmdb/.libs/libclipper-mmdb.so -lmmdb2 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-Wformat -Werror=format-security -std=gnu++98 -Wl,-z,relro -o cns2mtz cns2mtz.o ../clipper/ccp4/libclipper-ccp4.la ../clipper/mmdb/libclipper-mmdb.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/aarch64-linux-gnu -lmmdb2 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-z -Wl,relro -o .libs/cns2mtz cns2mtz.o ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/mmdb/.libs/libclipper-mmdb.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/aarch64-linux-gnu -lmmdb2 make[3]: Leaving directory '/build/clipper-2.1.20201109/examples' make[2]: Leaving directory '/build/clipper-2.1.20201109/examples' @@ -1746,7 +1787,7 @@ make[3]: Entering directory '/build/clipper-2.1.20201109/clipper/core' make[4]: Entering directory '/build/clipper-2.1.20201109/clipper/core' /usr/bin/mkdir -p '/build/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu' - /bin/bash ../../libtool --mode=install /usr/bin/install -c libclipper-core.la '/build/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu' + /bin/sh ../../libtool --mode=install /usr/bin/install -c libclipper-core.la '/build/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libclipper-core.so.2.0.1 /build/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-core.so.2.0.1 libtool: install: (cd /build/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libclipper-core.so.2.0.1 libclipper-core.so.2 || { rm -f libclipper-core.so.2 && ln -s libclipper-core.so.2.0.1 libclipper-core.so.2; }; }) libtool: install: (cd /build/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libclipper-core.so.2.0.1 libclipper-core.so || { rm -f libclipper-core.so && ln -s libclipper-core.so.2.0.1 libclipper-core.so; }; }) @@ -1761,9 +1802,9 @@ make[3]: Entering directory '/build/clipper-2.1.20201109/clipper/contrib' make[4]: Entering directory '/build/clipper-2.1.20201109/clipper/contrib' /usr/bin/mkdir -p '/build/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu' - /bin/bash ../../libtool --mode=install /usr/bin/install -c libclipper-contrib.la '/build/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu' + /bin/sh ../../libtool --mode=install /usr/bin/install -c libclipper-contrib.la '/build/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libclipper-contrib.la' -libtool: install: (cd /build/clipper-2.1.20201109/clipper/contrib; /bin/bash "/build/clipper-2.1.20201109/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -o libclipper-contrib.la -rpath /usr/lib/aarch64-linux-gnu convolution_search.lo sfcalc.lo edcalc.lo sfcalc_obs.lo fffear.lo sfscale.lo function_object_bases.lo sfweight.lo mapfilter.lo skeleton.lo originmatch.lo test_contrib.lo ../core/libclipper-core.la -lm -inst-prefix-dir /build/clipper-2.1.20201109/debian/tmp) +libtool: install: (cd /build/clipper-2.1.20201109/clipper/contrib; /bin/sh "/build/clipper-2.1.20201109/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -o libclipper-contrib.la -rpath /usr/lib/aarch64-linux-gnu convolution_search.lo sfcalc.lo edcalc.lo sfcalc_obs.lo fffear.lo sfscale.lo function_object_bases.lo sfweight.lo mapfilter.lo skeleton.lo originmatch.lo test_contrib.lo ../core/libclipper-core.la -lm -inst-prefix-dir /build/clipper-2.1.20201109/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/12/crtbeginS.o .libs/convolution_search.o .libs/sfcalc.o .libs/edcalc.o .libs/sfcalc_obs.o .libs/fffear.o .libs/sfscale.o .libs/function_object_bases.o .libs/sfweight.o .libs/mapfilter.o .libs/skeleton.o .libs/originmatch.o .libs/test_contrib.o -L/build/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lclipper-core -L/usr/lib/gcc/aarch64-linux-gnu/12 -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/12/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/12/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-contrib.so.2 -o .libs/libclipper-contrib.so.2.0.1 libtool: install: /usr/bin/install -c .libs/libclipper-contrib.so.2.0.1T /build/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-contrib.so.2.0.1 libtool: install: (cd /build/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libclipper-contrib.so.2.0.1 libclipper-contrib.so.2 || { rm -f libclipper-contrib.so.2 && ln -s libclipper-contrib.so.2.0.1 libclipper-contrib.so.2; }; }) @@ -1777,51 +1818,51 @@ make[3]: Entering directory '/build/clipper-2.1.20201109/clipper' make[4]: Entering directory '/build/clipper-2.1.20201109/clipper' /usr/bin/mkdir -p '/build/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu' - /bin/bash ../libtool --mode=install /usr/bin/install -c mmdb/libclipper-mmdb.la minimol/libclipper-minimol.la phs/libclipper-phs.la cif/libclipper-cif.la ccp4/libclipper-ccp4.la cns/libclipper-cns.la fortran/libclipper-fortran.la '/build/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu' + /bin/sh ../libtool --mode=install /usr/bin/install -c mmdb/libclipper-mmdb.la minimol/libclipper-minimol.la phs/libclipper-phs.la cif/libclipper-cif.la ccp4/libclipper-ccp4.la cns/libclipper-cns.la fortran/libclipper-fortran.la '/build/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'mmdb/libclipper-mmdb.la' -libtool: install: (cd /build/clipper-2.1.20201109/clipper; /bin/bash "/build/clipper-2.1.20201109/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -o mmdb/libclipper-mmdb.la -rpath /usr/lib/aarch64-linux-gnu mmdb/clipper_mmdb.lo core/libclipper-core.la -lmmdb2 -lm -inst-prefix-dir /build/clipper-2.1.20201109/debian/tmp) +libtool: install: (cd /build/clipper-2.1.20201109/clipper; /bin/sh "/build/clipper-2.1.20201109/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -o mmdb/libclipper-mmdb.la -rpath /usr/lib/aarch64-linux-gnu mmdb/clipper_mmdb.lo core/libclipper-core.la -lmmdb2 -lm -inst-prefix-dir /build/clipper-2.1.20201109/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/12/crtbeginS.o mmdb/.libs/clipper_mmdb.o -L/build/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lclipper-core -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/12 -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/12/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/12/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-mmdb.so.2 -o mmdb/.libs/libclipper-mmdb.so.2.0.1 libtool: install: /usr/bin/install -c mmdb/.libs/libclipper-mmdb.so.2.0.1T /build/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-mmdb.so.2.0.1 libtool: install: (cd /build/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libclipper-mmdb.so.2.0.1 libclipper-mmdb.so.2 || { rm -f libclipper-mmdb.so.2 && ln -s libclipper-mmdb.so.2.0.1 libclipper-mmdb.so.2; }; }) libtool: install: (cd /build/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libclipper-mmdb.so.2.0.1 libclipper-mmdb.so || { rm -f libclipper-mmdb.so && ln -s libclipper-mmdb.so.2.0.1 libclipper-mmdb.so; }; }) libtool: install: /usr/bin/install -c mmdb/.libs/libclipper-mmdb.lai /build/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-mmdb.la libtool: warning: relinking 'minimol/libclipper-minimol.la' -libtool: install: (cd /build/clipper-2.1.20201109/clipper; /bin/bash "/build/clipper-2.1.20201109/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -o minimol/libclipper-minimol.la -rpath /usr/lib/aarch64-linux-gnu minimol/minimol.lo minimol/container_minimol.lo minimol/minimol_data.lo minimol/minimol_io.lo minimol/minimol_seq.lo minimol/minimol_utils.lo core/libclipper-core.la mmdb/libclipper-mmdb.la -lmmdb2 -lm -inst-prefix-dir /build/clipper-2.1.20201109/debian/tmp) +libtool: install: (cd /build/clipper-2.1.20201109/clipper; /bin/sh "/build/clipper-2.1.20201109/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -o minimol/libclipper-minimol.la -rpath /usr/lib/aarch64-linux-gnu minimol/minimol.lo minimol/container_minimol.lo minimol/minimol_data.lo minimol/minimol_io.lo minimol/minimol_seq.lo minimol/minimol_utils.lo core/libclipper-core.la mmdb/libclipper-mmdb.la -lmmdb2 -lm -inst-prefix-dir /build/clipper-2.1.20201109/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/12/crtbeginS.o minimol/.libs/minimol.o minimol/.libs/container_minimol.o minimol/.libs/minimol_data.o minimol/.libs/minimol_io.o minimol/.libs/minimol_seq.o minimol/.libs/minimol_utils.o -L/build/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lclipper-core -lclipper-mmdb -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/12 -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/12/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/12/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-minimol.so.2 -o minimol/.libs/libclipper-minimol.so.2.0.1 libtool: install: /usr/bin/install -c minimol/.libs/libclipper-minimol.so.2.0.1T /build/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-minimol.so.2.0.1 libtool: install: (cd /build/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libclipper-minimol.so.2.0.1 libclipper-minimol.so.2 || { rm -f libclipper-minimol.so.2 && ln -s libclipper-minimol.so.2.0.1 libclipper-minimol.so.2; }; }) libtool: install: (cd /build/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libclipper-minimol.so.2.0.1 libclipper-minimol.so || { rm -f libclipper-minimol.so && ln -s libclipper-minimol.so.2.0.1 libclipper-minimol.so; }; }) libtool: install: /usr/bin/install -c minimol/.libs/libclipper-minimol.lai /build/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-minimol.la libtool: warning: relinking 'phs/libclipper-phs.la' -libtool: install: (cd /build/clipper-2.1.20201109/clipper; /bin/bash "/build/clipper-2.1.20201109/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -o phs/libclipper-phs.la -rpath /usr/lib/aarch64-linux-gnu phs/phs_io.lo core/libclipper-core.la -lm -inst-prefix-dir /build/clipper-2.1.20201109/debian/tmp) +libtool: install: (cd /build/clipper-2.1.20201109/clipper; /bin/sh "/build/clipper-2.1.20201109/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -o phs/libclipper-phs.la -rpath /usr/lib/aarch64-linux-gnu phs/phs_io.lo core/libclipper-core.la -lm -inst-prefix-dir /build/clipper-2.1.20201109/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/12/crtbeginS.o phs/.libs/phs_io.o -L/build/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lclipper-core -L/usr/lib/gcc/aarch64-linux-gnu/12 -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/12/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/12/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-phs.so.2 -o phs/.libs/libclipper-phs.so.2.0.1 libtool: install: /usr/bin/install -c phs/.libs/libclipper-phs.so.2.0.1T /build/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-phs.so.2.0.1 libtool: install: (cd /build/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libclipper-phs.so.2.0.1 libclipper-phs.so.2 || { rm -f libclipper-phs.so.2 && ln -s libclipper-phs.so.2.0.1 libclipper-phs.so.2; }; }) libtool: install: (cd /build/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libclipper-phs.so.2.0.1 libclipper-phs.so || { rm -f libclipper-phs.so && ln -s libclipper-phs.so.2.0.1 libclipper-phs.so; }; }) libtool: install: /usr/bin/install -c phs/.libs/libclipper-phs.lai /build/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-phs.la libtool: warning: relinking 'cif/libclipper-cif.la' -libtool: install: (cd /build/clipper-2.1.20201109/clipper; /bin/bash "/build/clipper-2.1.20201109/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -o cif/libclipper-cif.la -rpath /usr/lib/aarch64-linux-gnu cif/cif_data_io.lo core/libclipper-core.la -lmmdb2 -lm -inst-prefix-dir /build/clipper-2.1.20201109/debian/tmp) +libtool: install: (cd /build/clipper-2.1.20201109/clipper; /bin/sh "/build/clipper-2.1.20201109/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -o cif/libclipper-cif.la -rpath /usr/lib/aarch64-linux-gnu cif/cif_data_io.lo core/libclipper-core.la -lmmdb2 -lm -inst-prefix-dir /build/clipper-2.1.20201109/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/12/crtbeginS.o cif/.libs/cif_data_io.o -L/build/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lclipper-core -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/12 -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/12/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/12/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-cif.so.2 -o cif/.libs/libclipper-cif.so.2.0.1 libtool: install: /usr/bin/install -c cif/.libs/libclipper-cif.so.2.0.1T /build/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-cif.so.2.0.1 libtool: install: (cd /build/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libclipper-cif.so.2.0.1 libclipper-cif.so.2 || { rm -f libclipper-cif.so.2 && ln -s libclipper-cif.so.2.0.1 libclipper-cif.so.2; }; }) libtool: install: (cd /build/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libclipper-cif.so.2.0.1 libclipper-cif.so || { rm -f libclipper-cif.so && ln -s libclipper-cif.so.2.0.1 libclipper-cif.so; }; }) libtool: install: /usr/bin/install -c cif/.libs/libclipper-cif.lai /build/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-cif.la libtool: warning: relinking 'ccp4/libclipper-ccp4.la' -libtool: install: (cd /build/clipper-2.1.20201109/clipper; /bin/bash "/build/clipper-2.1.20201109/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -o ccp4/libclipper-ccp4.la -rpath /usr/lib/aarch64-linux-gnu ccp4/ccp4_mtz_types.lo ccp4/ccp4_mtz_io.lo ccp4/ccp4_map_io.lo ccp4/ccp4_utils.lo core/libclipper-core.la -lccp4c -lm -inst-prefix-dir /build/clipper-2.1.20201109/debian/tmp) +libtool: install: (cd /build/clipper-2.1.20201109/clipper; /bin/sh "/build/clipper-2.1.20201109/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -o ccp4/libclipper-ccp4.la -rpath /usr/lib/aarch64-linux-gnu ccp4/ccp4_mtz_types.lo ccp4/ccp4_mtz_io.lo ccp4/ccp4_map_io.lo ccp4/ccp4_utils.lo core/libclipper-core.la -lccp4c -lm -inst-prefix-dir /build/clipper-2.1.20201109/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/12/crtbeginS.o ccp4/.libs/ccp4_mtz_types.o ccp4/.libs/ccp4_mtz_io.o ccp4/.libs/ccp4_map_io.o ccp4/.libs/ccp4_utils.o -L/build/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lclipper-core -lccp4c -L/usr/lib/gcc/aarch64-linux-gnu/12 -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/12/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/12/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-ccp4.so.2 -o ccp4/.libs/libclipper-ccp4.so.2.0.1 libtool: install: /usr/bin/install -c ccp4/.libs/libclipper-ccp4.so.2.0.1T /build/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-ccp4.so.2.0.1 libtool: install: (cd /build/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libclipper-ccp4.so.2.0.1 libclipper-ccp4.so.2 || { rm -f libclipper-ccp4.so.2 && ln -s libclipper-ccp4.so.2.0.1 libclipper-ccp4.so.2; }; }) libtool: install: (cd /build/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libclipper-ccp4.so.2.0.1 libclipper-ccp4.so || { rm -f libclipper-ccp4.so && ln -s libclipper-ccp4.so.2.0.1 libclipper-ccp4.so; }; }) libtool: install: /usr/bin/install -c ccp4/.libs/libclipper-ccp4.lai /build/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-ccp4.la libtool: warning: relinking 'cns/libclipper-cns.la' -libtool: install: (cd /build/clipper-2.1.20201109/clipper; /bin/bash "/build/clipper-2.1.20201109/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -o cns/libclipper-cns.la -rpath /usr/lib/aarch64-linux-gnu cns/cns_hkl_io.lo cns/cns_map_io.lo core/libclipper-core.la -lm -inst-prefix-dir /build/clipper-2.1.20201109/debian/tmp) +libtool: install: (cd /build/clipper-2.1.20201109/clipper; /bin/sh "/build/clipper-2.1.20201109/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -o cns/libclipper-cns.la -rpath /usr/lib/aarch64-linux-gnu cns/cns_hkl_io.lo cns/cns_map_io.lo core/libclipper-core.la -lm -inst-prefix-dir /build/clipper-2.1.20201109/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/12/crtbeginS.o cns/.libs/cns_hkl_io.o cns/.libs/cns_map_io.o -L/build/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lclipper-core -L/usr/lib/gcc/aarch64-linux-gnu/12 -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/12/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/12/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-cns.so.2 -o cns/.libs/libclipper-cns.so.2.0.1 libtool: install: /usr/bin/install -c cns/.libs/libclipper-cns.so.2.0.1T /build/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-cns.so.2.0.1 libtool: install: (cd /build/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libclipper-cns.so.2.0.1 libclipper-cns.so.2 || { rm -f libclipper-cns.so.2 && ln -s libclipper-cns.so.2.0.1 libclipper-cns.so.2; }; }) libtool: install: (cd /build/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libclipper-cns.so.2.0.1 libclipper-cns.so || { rm -f libclipper-cns.so && ln -s libclipper-cns.so.2.0.1 libclipper-cns.so; }; }) libtool: install: /usr/bin/install -c cns/.libs/libclipper-cns.lai /build/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-cns.la libtool: warning: relinking 'fortran/libclipper-fortran.la' -libtool: install: (cd /build/clipper-2.1.20201109/clipper; /bin/bash "/build/clipper-2.1.20201109/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -o fortran/libclipper-fortran.la -rpath /usr/lib/aarch64-linux-gnu fortran/f_interface.lo core/libclipper-core.la contrib/libclipper-contrib.la -lm -inst-prefix-dir /build/clipper-2.1.20201109/debian/tmp) +libtool: install: (cd /build/clipper-2.1.20201109/clipper; /bin/sh "/build/clipper-2.1.20201109/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -o fortran/libclipper-fortran.la -rpath /usr/lib/aarch64-linux-gnu fortran/f_interface.lo core/libclipper-core.la contrib/libclipper-contrib.la -lm -inst-prefix-dir /build/clipper-2.1.20201109/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/12/crtbeginS.o fortran/.libs/f_interface.o -L/build/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lclipper-core -lclipper-contrib -L/usr/lib/gcc/aarch64-linux-gnu/12 -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/12/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/12/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-fortran.so.2 -o fortran/.libs/libclipper-fortran.so.2.0.1 libtool: install: /usr/bin/install -c fortran/.libs/libclipper-fortran.so.2.0.1T /build/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-fortran.so.2.0.1 libtool: install: (cd /build/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libclipper-fortran.so.2.0.1 libclipper-fortran.so.2 || { rm -f libclipper-fortran.so.2 && ln -s libclipper-fortran.so.2.0.1 libclipper-fortran.so.2; }; }) @@ -2003,24 +2044,6 @@ Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Xmap__base_1_1Map__reference__coord.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Xmap__base_1_1Map__reference__base.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Xmap__base.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Xmap.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Vec3.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1U__aniso__orth.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1U__aniso__frac.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Test__core.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Test__base.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__sigmaa__omegaa.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__sigmaa.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__scaleLogI1I2.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__scaleLogF1F2.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__scaleI1I2.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__scaleF1F2.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__scaleEsq.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__meanFnth.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__meanEnth.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__base.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Symop.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1String.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Spgr__descr_1_1Symop__codes.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Spgr__descr.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Spacegroup.png using File::StripNondeterminism::handlers::png @@ -2039,42 +2062,24 @@ Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1NXmap__operator.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1NXmap__base_1_1Map__reference__index.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1NXmap__base_1_1Map__reference__coord.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1NXmap__base_1_1Map__reference__base.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1NXmap__base.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1NXmap.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1NX__operator.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Message__warn.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Message__info.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Message__generic.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Message__fatal.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Message__dtor.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Message__ctor.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Message__base.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Matrix.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Mat33sym.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Isymop.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Histogram.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1HKL__info_1_1HKL__reference__index.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1HKL__info_1_1HKL__reference__coord.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1HKL__info_1_1HKL__reference__base.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Datatype__base.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Curv__orth.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Curv__map.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Curv__frac.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Coord__reci__orth.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Coord__reci__frac.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Coord__orth.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Coord__map.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Coord__grid.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Coord__frac.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Container.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Cell__descr.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Cell.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1CXmap.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1CSpacegroup.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1CResolution.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1CNXmap__operator.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1CNXmap.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Xmap.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Vec3.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1U__aniso__orth.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1U__aniso__frac.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Test__core.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Test__base.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__sigmaa__omegaa.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__sigmaa.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__scaleLogI1I2.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__scaleLogF1F2.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__scaleI1I2.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__scaleF1F2.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__scaleEsq.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__meanFnth.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__meanEnth.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__base.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Symop.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1String.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1CHKL__info.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1CHKL__data.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1CGrid__sampling.png using File::StripNondeterminism::handlers::png @@ -2111,36 +2116,72 @@ Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1FFTmap__p1.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1FFTmap__base.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1FFTmap.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1NXmap__base_1_1Map__reference__base.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1NXmap__base.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1NXmap.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1NX__operator.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Message__warn.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Message__info.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Message__generic.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Message__fatal.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Message__dtor.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Message__ctor.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Message__base.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Matrix.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Mat33sym.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Isymop.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Histogram.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1HKL__info_1_1HKL__reference__index.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1HKL__info_1_1HKL__reference__coord.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1HKL__info_1_1HKL__reference__base.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Datatype__base.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Curv__orth.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Curv__map.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Curv__frac.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Coord__reci__orth.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Coord__reci__frac.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Coord__orth.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Coord__map.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Coord__grid.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Coord__frac.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Container.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Cell__descr.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Cell.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1CXmap.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1CSpacegroup.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1CResolution.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1CNXmap__operator.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1CNXmap.png using File::StripNondeterminism::handlers::png dh_compress "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" cd debian/libclipper-dev cd debian/libclipper2 cd debian/libclipper-doc + chmod a-x usr/share/doc/libclipper2/changelog usr/share/doc/libclipper2/changelog.Debian chmod a-x usr/share/doc/libclipper-dev/changelog usr/share/doc/libclipper-dev/changelog.Debian gzip -9nf usr/share/doc/libclipper-dev/changelog usr/share/doc/libclipper-dev/changelog.Debian + gzip -9nf usr/share/doc/libclipper2/changelog usr/share/doc/libclipper2/changelog.Debian + cd '/build/clipper-2.1.20201109' chmod a-x usr/share/doc/libclipper-doc/changelog usr/share/doc/libclipper-doc/changelog.Debian - chmod a-x usr/share/doc/libclipper2/changelog usr/share/doc/libclipper2/changelog.Debian cd '/build/clipper-2.1.20201109' gzip -9nf usr/share/doc/libclipper-doc/changelog usr/share/doc/libclipper-doc/changelog.Debian - gzip -9nf usr/share/doc/libclipper2/changelog usr/share/doc/libclipper2/changelog.Debian - cd '/build/clipper-2.1.20201109' cd '/build/clipper-2.1.20201109' dh_fixperms "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" find debian/libclipper-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libclipper2 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libclipper-doc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s - find debian/libclipper2/usr/share/doc -type f -a -true -a ! -regex 'debian/libclipper2/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libclipper-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libclipper-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/libclipper2/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 - find debian/libclipper-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 - find debian/libclipper2/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/libclipper2/usr/share/doc -type f -a -true -a ! -regex 'debian/libclipper2/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libclipper-doc/usr/share/doc -type f -a -true -a ! -regex 'debian/libclipper-doc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/libclipper-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 + find debian/libclipper2/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libclipper-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/libclipper2 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/libclipper2/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w - find debian/libclipper-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libclipper-doc/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 - find debian/libclipper-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w + find debian/libclipper2/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/libclipper-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libclipper-doc -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/libclipper2 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/libclipper-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w + find debian/libclipper2/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" dh_missing: warning: usr/lib/aarch64-linux-gnu/libclipper-ccp4.la exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/aarch64-linux-gnu/libclipper-cif.la exists in debian/tmp but is not installed to anywhere @@ -2262,9 +2303,9 @@ echo misc:Pre-Depends= >> debian/libclipper2.substvars install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/DEBIAN dpkg-gencontrol -plibclipper2 -ldebian/changelog -Tdebian/libclipper2.substvars -Pdebian/.debhelper/libclipper2/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=libclipper2-dbgsym "-DDepends=libclipper2 (= \${binary:Version})" "-DDescription=debug symbols for libclipper2" "-DBuild-Ids=0456de7f62dc6a298983d517783d804e2e58b6bb 181bbfb6dd01468234664d2fb856d4c358902eab 31e319e9fc24f77b123b3bdeb03563bb5701ead8 336bb8e8a2cabf6d012ceb9566ee85fc8fb43919 5bc5a6c942991f551c3e7ebd8ec320e1f152abc8 9443f2105d25823396d342c8c3c7e5903952090c 9c2fa1eb597734bdafdc9c001be8d6b9d03ad1fd ad59bb0141cabee31eb035cc319fcc564be7330b c8c39956b1a887cdd26ca8a59fac895e98db75b1" -DSection=debug "-DReplaces=libclipper2-dbg (<< 2.1.20160809-1~)" "-DBreaks=libclipper2-dbg (<< 2.1.20160809-1~)" + chmod 0644 -- debian/libclipper-doc/DEBIAN/control chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/DEBIAN/control dpkg-gencontrol -plibclipper2 -ldebian/changelog -Tdebian/libclipper2.substvars -Pdebian/libclipper2 - chmod 0644 -- debian/libclipper-doc/DEBIAN/control chmod 0644 -- debian/libclipper-dev/DEBIAN/control chmod 0644 -- debian/libclipper2/DEBIAN/control dh_md5sums "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" @@ -2272,23 +2313,23 @@ install -m0755 -d debian/libclipper2/DEBIAN install -m0755 -d debian/libclipper-dev/DEBIAN cd debian/libclipper2 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums - cd debian/libclipper-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/libclipper-doc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums - chmod 0644 -- debian/libclipper-dev/DEBIAN/md5sums + cd debian/libclipper-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libclipper2/DEBIAN/md5sums install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/DEBIAN cd debian/.debhelper/libclipper2/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums - chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/DEBIAN/md5sums + chmod 0644 -- debian/libclipper-dev/DEBIAN/md5sums chmod 0644 -- debian/libclipper-doc/DEBIAN/md5sums + chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/DEBIAN/md5sums dh_builddeb "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" dpkg-deb --root-owner-group --build debian/libclipper-dev .. - dpkg-deb --root-owner-group --build debian/libclipper2 .. - dpkg-deb --root-owner-group --build debian/.debhelper/libclipper2/dbgsym-root .. dpkg-deb --root-owner-group --build debian/libclipper-doc .. + dpkg-deb --root-owner-group --build debian/.debhelper/libclipper2/dbgsym-root .. + dpkg-deb --root-owner-group --build debian/libclipper2 .. +dpkg-deb: building package 'libclipper2-dbgsym' in '../libclipper2-dbgsym_2.1.20201109-1_arm64.deb'. dpkg-deb: building package 'libclipper-dev' in '../libclipper-dev_2.1.20201109-1_arm64.deb'. -dpkg-deb: building package 'libclipper2' in '../libclipper2_2.1.20201109-1_arm64.deb'. dpkg-deb: building package 'libclipper-doc' in '../libclipper-doc_2.1.20201109-1_all.deb'. -dpkg-deb: building package 'libclipper2-dbgsym' in '../libclipper2-dbgsym_2.1.20201109-1_arm64.deb'. +dpkg-deb: building package 'libclipper2' in '../libclipper2_2.1.20201109-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../clipper_2.1.20201109-1_arm64.buildinfo dpkg-genchanges --build=binary -O../clipper_2.1.20201109-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -2296,12 +2337,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/10505/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/10505/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/25350 and its subdirectories -I: Current time: Wed Apr 19 17:34:02 -12 2023 -I: pbuilder-time-stamp: 1681968842 +I: removing directory /srv/workspace/pbuilder/10505 and its subdirectories +I: Current time: Thu May 23 02:05:00 +14 2024 +I: pbuilder-time-stamp: 1716379500