Diff of the two buildlogs: -- --- b1/build.log 2023-06-01 12:45:17.538456150 +0000 +++ b2/build.log 2023-06-01 12:49:36.743112421 +0000 @@ -1,65 +1,8 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Jul 3 07:06:36 -12 2024 -I: pbuilder-time-stamp: 1720033596 +I: Current time: Fri Jun 2 02:45:20 +14 2023 +I: pbuilder-time-stamp: 1685623520 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] -tar: ./usr/share/perl5/Debian: time stamp 2025-08-04 08:27:02 is 34305622.689605731 s in the future -tar: ./usr/share/man/pt/man8: time stamp 2025-08-04 08:27:02 is 34305622.653376711 s in the future -tar: ./usr/share/man/pt/man5: time stamp 2025-08-04 08:27:02 is 34305622.651135571 s in the future -tar: ./usr/share/man/nl/man8: time stamp 2025-08-04 08:27:02 is 34305622.646280315 s in the future -tar: ./usr/share/man/nl/man5: time stamp 2025-08-04 08:27:02 is 34305622.644219734 s in the future -tar: ./usr/share/man/man5: time stamp 2025-08-04 08:27:02 is 34305622.629849407 s in the future -tar: ./usr/share/man/fr/man5: time stamp 2025-08-04 08:27:02 is 34305622.599958659 s in the future -tar: ./usr/share/man/de/man5: time stamp 2025-08-04 08:27:02 is 34305622.589773027 s in the future -tar: ./usr/share/locale/zh_CN/LC_MESSAGES: time stamp 2025-08-04 08:27:02 is 34305622.410215401 s in the future -tar: ./usr/share/locale/vi/LC_MESSAGES: time stamp 2025-08-04 08:27:02 is 34305622.370225815 s in the future -tar: ./usr/share/locale/uk/LC_MESSAGES: time stamp 2025-08-04 08:27:02 is 34305622.319683325 s in the future -tar: ./usr/share/locale/sv/LC_MESSAGES: time stamp 2025-08-04 08:27:02 is 34305622.250730964 s in the future -tar: ./usr/share/locale/sk/LC_MESSAGES: time stamp 2025-08-04 08:27:02 is 34305622.227983312 s in the future -tar: ./usr/share/locale/ru/LC_MESSAGES: time stamp 2025-08-04 08:27:02 is 34305622.182209747 s in the future -tar: ./usr/share/locale/pt_BR/LC_MESSAGES: time stamp 2025-08-04 08:27:02 is 34305622.12643906 s in the future -tar: ./usr/share/locale/pt/LC_MESSAGES: time stamp 2025-08-04 08:27:02 is 34305622.086279838 s in the future -tar: ./usr/share/locale/pl/LC_MESSAGES: time stamp 2025-08-04 08:27:02 is 34305622.060403238 s in the future -tar: ./usr/share/locale/nl/LC_MESSAGES: time stamp 2025-08-04 08:27:02 is 34305622.03791425 s in the future -tar: ./usr/share/locale/nb/LC_MESSAGES: time stamp 2025-08-04 08:27:02 is 34305622.017369674 s in the future -tar: ./usr/share/locale/ko/LC_MESSAGES: time stamp 2025-08-04 08:27:02 is 34305621.99079445 s in the future -tar: ./usr/share/locale/ja/LC_MESSAGES: time stamp 2025-08-04 08:27:02 is 34305621.960229423 s in the future -tar: ./usr/share/locale/it/LC_MESSAGES: time stamp 2025-08-04 08:27:02 is 34305621.937915853 s in the future -tar: ./usr/share/locale/hu/LC_MESSAGES: time stamp 2025-08-04 08:27:02 is 34305621.922445315 s in the future -tar: ./usr/share/locale/gl/LC_MESSAGES: time stamp 2025-08-04 08:27:02 is 34305621.913770754 s in the future -tar: ./usr/share/locale/fr/LC_MESSAGES: time stamp 2025-08-04 08:27:02 is 34305621.863170779 s in the future -tar: ./usr/share/locale/eu/LC_MESSAGES: time stamp 2025-08-04 08:27:02 is 34305621.822286865 s in the future -tar: ./usr/share/locale/es/LC_MESSAGES: time stamp 2025-08-04 08:27:02 is 34305621.78234136 s in the future -tar: ./usr/share/locale/de/LC_MESSAGES: time stamp 2025-08-04 08:27:02 is 34305621.747921591 s in the future -tar: ./usr/share/locale/da/LC_MESSAGES: time stamp 2025-08-04 08:27:02 is 34305621.72148003 s in the future -tar: ./usr/share/locale/cs/LC_MESSAGES: time stamp 2025-08-04 08:27:02 is 34305621.696672956 s in the future -tar: ./usr/share/locale/ca/LC_MESSAGES: time stamp 2025-08-04 08:27:02 is 34305621.670852889 s in the future -tar: ./usr/share/doc/adduser/examples/adduser.local.conf.examples/skel.other: time stamp 2025-08-04 08:27:02 is 34305621.606111613 s in the future -tar: ./usr/share/doc/adduser/examples/adduser.local.conf.examples/skel: time stamp 2025-08-04 08:27:02 is 34305621.605969065 s in the future -tar: ./usr/share/doc/adduser/examples/adduser.local.conf.examples: time stamp 2025-08-04 08:27:02 is 34305621.605877588 s in the future -tar: ./usr/share/doc/adduser/examples: time stamp 2025-08-04 08:27:02 is 34305621.605285368 s in the future -tar: ./usr/share/doc/adduser: time stamp 2025-08-04 08:27:02 is 34305621.604803492 s in the future -tar: ./var/log/dpkg.log: time stamp 2025-08-04 08:27:02 is 34305616.365202381 s in the future -tar: ./var/log/apt/history.log: time stamp 2025-08-04 08:27:02 is 34305616.365116491 s in the future -tar: ./var/log/apt/term.log: time stamp 2025-08-04 08:27:02 is 34305616.365056292 s in the future -tar: ./var/log/apt/eipp.log.xz: time stamp 2025-08-04 08:27:02 is 34305616.364995767 s in the future -tar: ./var/log/apt: time stamp 2025-08-04 08:27:02 is 34305616.364975373 s in the future -tar: ./var/cache/apt/archives/partial: time stamp 2025-08-04 08:27:02 is 34305616.352822348 s in the future -tar: ./var/cache/apt/archives: time stamp 2025-08-04 08:27:04 is 34305618.352781109 s in the future -tar: ./var/lib/dpkg/triggers/Lock: time stamp 2025-08-04 08:27:02 is 34305616.351643071 s in the future -tar: ./var/lib/dpkg/lock: time stamp 2025-08-04 08:27:02 is 34305616.351595254 s in the future -tar: ./var/lib/dpkg/updates: time stamp 2025-08-04 08:27:02 is 34305616.350569024 s in the future -tar: ./var/lib/dpkg/info/adduser.list: time stamp 2025-08-04 08:27:02 is 34305616.309364962 s in the future -tar: ./var/lib/dpkg/info: time stamp 2025-08-04 08:27:02 is 34305616.309214621 s in the future -tar: ./var/lib/dpkg/status-old: time stamp 2025-08-04 08:27:02 is 34305616.308089521 s in the future -tar: ./var/lib/dpkg/status: time stamp 2025-08-04 08:27:02 is 34305616.306833399 s in the future -tar: ./var/lib/dpkg: time stamp 2025-08-04 08:27:02 is 34305616.306805968 s in the future -tar: ./var/lib/apt/extended_states: time stamp 2025-08-04 08:27:02 is 34305615.888714936 s in the future -tar: ./var/lib/apt: time stamp 2025-08-04 08:27:02 is 34305615.888640717 s in the future -tar: ./usr/share/man/de/man8: time stamp 2025-08-04 08:27:02 is 34305615.786918577 s in the future -tar: ./usr/share/man/fr/man8: time stamp 2025-08-04 08:27:02 is 34305615.786778967 s in the future -tar: ./usr/share/man/man8: time stamp 2025-08-04 08:27:02 is 34305615.786616169 s in the future -tar: ./usr/sbin: time stamp 2025-08-04 08:27:02 is 34305615.785877585 s in the future I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem @@ -73,7 +16,7 @@ I: copying [./metabat_2.15.orig.tar.gz] I: copying [./metabat_2.15-4.debian.tar.xz] I: Extracting source -gpgv: Signature made Thu Sep 29 04:19:08 2022 -12 +gpgv: Signature made Fri Sep 30 06:19:08 2022 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -85,135 +28,167 @@ dpkg-source: info: applying use_debian_packaged_libs.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1580468/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3382159/tmp/hooks/D01_modify_environment starting +debug: Running on ionos1-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jun 2 02:45 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3382159/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3382159/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16 ' - DISTRIBUTION='bookworm' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.15(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15 ' + DIRSTACK=() + DISTRIBUTION=bookworm + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='e8fb243ef9bd4ac79e6be14983b00c21' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1580468' - PS1='# ' - PS2='> ' + INVOCATION_ID=14c4a03a1ea241e28fc77d485a85e2f1 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3382159 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.863itTIn/pbuilderrc_uO5Q --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.863itTIn/b1 --logfile b1/build.log metabat_2.15-4.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://85.184.249.68:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.863itTIn/pbuilderrc_5hTD --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.863itTIn/b2 --logfile b2/build.log --extrapackages usrmerge metabat_2.15-4.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://78.137.99.97:3128 I: uname -a - Linux ionos5-amd64 6.1.0-0.deb11.7-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.20-2~bpo11+1 (2023-04-23) x86_64 GNU/Linux + Linux i-capture-the-hostname 5.10.0-23-amd64 #1 SMP Debian 5.10.179-1 (2023-05-12) x86_64 GNU/Linux I: ls -l /bin total 5632 - -rwxr-xr-x 1 root root 1265648 Apr 23 2023 bash - -rwxr-xr-x 3 root root 39224 Sep 18 2022 bunzip2 - -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzcat - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep - -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzip2 - -rwxr-xr-x 1 root root 14568 Sep 18 2022 bzip2recover - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore - -rwxr-xr-x 1 root root 44016 Sep 20 2022 cat - -rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp - -rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod - -rwxr-xr-x 1 root root 72752 Sep 20 2022 chown - -rwxr-xr-x 1 root root 151152 Sep 20 2022 cp - -rwxr-xr-x 1 root root 125640 Jan 5 2023 dash - -rwxr-xr-x 1 root root 121904 Sep 20 2022 date - -rwxr-xr-x 1 root root 89240 Sep 20 2022 dd - -rwxr-xr-x 1 root root 102200 Sep 20 2022 df - -rwxr-xr-x 1 root root 151344 Sep 20 2022 dir - -rwxr-xr-x 1 root root 88656 Mar 22 2023 dmesg - lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname - -rwxr-xr-x 1 root root 43856 Sep 20 2022 echo - -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep - -rwxr-xr-x 1 root root 35664 Sep 20 2022 false - -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep - -rwxr-xr-x 1 root root 85600 Mar 22 2023 findmnt - -rwsr-xr-x 1 root root 35128 Mar 22 2023 fusermount - -rwxr-xr-x 1 root root 203152 Jan 24 2023 grep - -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip - -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe - -rwxr-xr-x 1 root root 98136 Apr 9 2022 gzip - -rwxr-xr-x 1 root root 22680 Dec 19 2022 hostname - -rwxr-xr-x 1 root root 72824 Sep 20 2022 ln - -rwxr-xr-x 1 root root 53024 Mar 23 2023 login - -rwxr-xr-x 1 root root 151344 Sep 20 2022 ls - -rwxr-xr-x 1 root root 207168 Mar 22 2023 lsblk - -rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir - -rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod - -rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp - -rwxr-xr-x 1 root root 59712 Mar 22 2023 more - -rwsr-xr-x 1 root root 59704 Mar 22 2023 mount - -rwxr-xr-x 1 root root 18744 Mar 22 2023 mountpoint - -rwxr-xr-x 1 root root 142968 Sep 20 2022 mv - lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 2 2023 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd - lrwxrwxrwx 1 root root 4 Apr 23 2023 rbash -> bash - -rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink - -rwxr-xr-x 1 root root 72752 Sep 20 2022 rm - -rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir - -rwxr-xr-x 1 root root 27560 Nov 2 2022 run-parts - -rwxr-xr-x 1 root root 126424 Jan 5 2023 sed - lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash - -rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep - -rwxr-xr-x 1 root root 85008 Sep 20 2022 stty - -rwsr-xr-x 1 root root 72000 Mar 22 2023 su - -rwxr-xr-x 1 root root 39824 Sep 20 2022 sync - -rwxr-xr-x 1 root root 531984 Apr 6 2023 tar - -rwxr-xr-x 1 root root 14520 Nov 2 2022 tempfile - -rwxr-xr-x 1 root root 109616 Sep 20 2022 touch - -rwxr-xr-x 1 root root 35664 Sep 20 2022 true - -rwxr-xr-x 1 root root 14568 Mar 22 2023 ulockmgr_server - -rwsr-xr-x 1 root root 35128 Mar 22 2023 umount - -rwxr-xr-x 1 root root 43888 Sep 20 2022 uname - -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress - -rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir - -rwxr-xr-x 1 root root 72024 Mar 22 2023 wdctl - lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat - -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp - -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff - -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep - -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep - -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce - -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep - -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless - -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore - -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew -I: user script /srv/workspace/pbuilder/1580468/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1265648 Apr 24 11:23 bash + -rwxr-xr-x 3 root root 39224 Sep 19 2022 bunzip2 + -rwxr-xr-x 3 root root 39224 Sep 19 2022 bzcat + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4893 Nov 28 2021 bzexe + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep + -rwxr-xr-x 3 root root 39224 Sep 19 2022 bzip2 + -rwxr-xr-x 1 root root 14568 Sep 19 2022 bzip2recover + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore + -rwxr-xr-x 1 root root 44016 Sep 21 2022 cat + -rwxr-xr-x 1 root root 68656 Sep 21 2022 chgrp + -rwxr-xr-x 1 root root 64496 Sep 21 2022 chmod + -rwxr-xr-x 1 root root 72752 Sep 21 2022 chown + -rwxr-xr-x 1 root root 151152 Sep 21 2022 cp + -rwxr-xr-x 1 root root 125640 Jan 6 03:20 dash + -rwxr-xr-x 1 root root 121904 Sep 21 2022 date + -rwxr-xr-x 1 root root 89240 Sep 21 2022 dd + -rwxr-xr-x 1 root root 102200 Sep 21 2022 df + -rwxr-xr-x 1 root root 151344 Sep 21 2022 dir + -rwxr-xr-x 1 root root 88656 Mar 24 00:02 dmesg + lrwxrwxrwx 1 root root 8 Dec 20 03:33 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Dec 20 03:33 domainname -> hostname + -rwxr-xr-x 1 root root 43856 Sep 21 2022 echo + -rwxr-xr-x 1 root root 41 Jan 25 04:43 egrep + -rwxr-xr-x 1 root root 35664 Sep 21 2022 false + -rwxr-xr-x 1 root root 41 Jan 25 04:43 fgrep + -rwxr-xr-x 1 root root 85600 Mar 24 00:02 findmnt + -rwsr-xr-x 1 root root 35128 Mar 23 22:35 fusermount + -rwxr-xr-x 1 root root 203152 Jan 25 04:43 grep + -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip + -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe + -rwxr-xr-x 1 root root 98136 Apr 10 2022 gzip + -rwxr-xr-x 1 root root 22680 Dec 20 03:33 hostname + -rwxr-xr-x 1 root root 72824 Sep 21 2022 ln + -rwxr-xr-x 1 root root 53024 Mar 24 02:40 login + -rwxr-xr-x 1 root root 151344 Sep 21 2022 ls + -rwxr-xr-x 1 root root 207168 Mar 24 00:02 lsblk + -rwxr-xr-x 1 root root 97552 Sep 21 2022 mkdir + -rwxr-xr-x 1 root root 72912 Sep 21 2022 mknod + -rwxr-xr-x 1 root root 43952 Sep 21 2022 mktemp + -rwxr-xr-x 1 root root 59712 Mar 24 00:02 more + -rwsr-xr-x 1 root root 59704 Mar 24 00:02 mount + -rwxr-xr-x 1 root root 18744 Mar 24 00:02 mountpoint + -rwxr-xr-x 1 root root 142968 Sep 21 2022 mv + lrwxrwxrwx 1 root root 8 Dec 20 03:33 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 3 20:25 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 43952 Sep 21 2022 pwd + lrwxrwxrwx 1 root root 4 Apr 24 11:23 rbash -> bash + -rwxr-xr-x 1 root root 52112 Sep 21 2022 readlink + -rwxr-xr-x 1 root root 72752 Sep 21 2022 rm + -rwxr-xr-x 1 root root 56240 Sep 21 2022 rmdir + -rwxr-xr-x 1 root root 27560 Nov 3 2022 run-parts + -rwxr-xr-x 1 root root 126424 Jan 6 09:55 sed + lrwxrwxrwx 1 root root 9 Jun 2 02:45 sh -> /bin/bash + -rwxr-xr-x 1 root root 43888 Sep 21 2022 sleep + -rwxr-xr-x 1 root root 85008 Sep 21 2022 stty + -rwsr-xr-x 1 root root 72000 Mar 24 00:02 su + -rwxr-xr-x 1 root root 39824 Sep 21 2022 sync + -rwxr-xr-x 1 root root 531984 Apr 7 04:25 tar + -rwxr-xr-x 1 root root 14520 Nov 3 2022 tempfile + -rwxr-xr-x 1 root root 109616 Sep 21 2022 touch + -rwxr-xr-x 1 root root 35664 Sep 21 2022 true + -rwxr-xr-x 1 root root 14568 Mar 23 22:35 ulockmgr_server + -rwsr-xr-x 1 root root 35128 Mar 24 00:02 umount + -rwxr-xr-x 1 root root 43888 Sep 21 2022 uname + -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress + -rwxr-xr-x 1 root root 151344 Sep 21 2022 vdir + -rwxr-xr-x 1 root root 72024 Mar 24 00:02 wdctl + lrwxrwxrwx 1 root root 8 Dec 20 03:33 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat + -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp + -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff + -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep + -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep + -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce + -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep + -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless + -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore + -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew +I: user script /srv/workspace/pbuilder/3382159/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -366,7 +341,7 @@ Get: 93 http://deb.debian.org/debian bookworm/main amd64 pkgconf-bin amd64 1.8.1-1 [29.5 kB] Get: 94 http://deb.debian.org/debian bookworm/main amd64 pkgconf amd64 1.8.1-1 [25.9 kB] Get: 95 http://deb.debian.org/debian bookworm/main amd64 pkg-config amd64 1.8.1-1 [13.7 kB] -Fetched 68.7 MB in 1s (51.5 MB/s) +Fetched 68.7 MB in 2s (28.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19591 files and directories currently installed.) @@ -762,8 +737,19 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +usrmerge is already the newest version (35). +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/metabat-2.15/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../metabat_2.15-4_source.changes +I: user script /srv/workspace/pbuilder/3382159/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +removed '/etc/unsupported-skip-usrmerge-conversion' +The system has been successfully converted. +I: user script /srv/workspace/pbuilder/3382159/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/metabat-2.15/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../metabat_2.15-4_source.changes dpkg-buildpackage: info: source package metabat dpkg-buildpackage: info: source version 2.15-4 dpkg-buildpackage: info: source distribution unstable @@ -822,7 +808,7 @@ -- Build files have been written to: /build/metabat-2.15/obj-x86_64-linux-gnu dh_auto_build - cd obj-x86_64-linux-gnu && make -j16 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-x86_64-linux-gnu && make -j15 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/metabat-2.15/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/metabat-2.15 -B/build/metabat-2.15/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/metabat-2.15/obj-x86_64-linux-gnu/CMakeFiles /build/metabat-2.15/obj-x86_64-linux-gnu//CMakeFiles/progress.marks @@ -830,36 +816,36 @@ make[2]: Entering directory '/build/metabat-2.15/obj-x86_64-linux-gnu' make -f src/CMakeFiles/metabat1.dir/build.make src/CMakeFiles/metabat1.dir/depend make -f src/CMakeFiles/metabat2.dir/build.make src/CMakeFiles/metabat2.dir/depend -make -f src/CMakeFiles/jgi_summarize_bam_contig_depths.dir/build.make src/CMakeFiles/jgi_summarize_bam_contig_depths.dir/depend -make -f src/CMakeFiles/contigOverlaps.dir/build.make src/CMakeFiles/contigOverlaps.dir/depend make[3]: Entering directory '/build/metabat-2.15/obj-x86_64-linux-gnu' cd /build/metabat-2.15/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/metabat-2.15 /build/metabat-2.15/src /build/metabat-2.15/obj-x86_64-linux-gnu /build/metabat-2.15/obj-x86_64-linux-gnu/src /build/metabat-2.15/obj-x86_64-linux-gnu/src/CMakeFiles/metabat1.dir/DependInfo.cmake --color= +make -f src/CMakeFiles/jgi_summarize_bam_contig_depths.dir/build.make src/CMakeFiles/jgi_summarize_bam_contig_depths.dir/depend make[3]: Entering directory '/build/metabat-2.15/obj-x86_64-linux-gnu' cd /build/metabat-2.15/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/metabat-2.15 /build/metabat-2.15/src /build/metabat-2.15/obj-x86_64-linux-gnu /build/metabat-2.15/obj-x86_64-linux-gnu/src /build/metabat-2.15/obj-x86_64-linux-gnu/src/CMakeFiles/metabat2.dir/DependInfo.cmake --color= +make -f src/CMakeFiles/contigOverlaps.dir/build.make src/CMakeFiles/contigOverlaps.dir/depend make[3]: Entering directory '/build/metabat-2.15/obj-x86_64-linux-gnu' cd /build/metabat-2.15/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/metabat-2.15 /build/metabat-2.15/src /build/metabat-2.15/obj-x86_64-linux-gnu /build/metabat-2.15/obj-x86_64-linux-gnu/src /build/metabat-2.15/obj-x86_64-linux-gnu/src/CMakeFiles/jgi_summarize_bam_contig_depths.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/metabat-2.15/obj-x86_64-linux-gnu' cd /build/metabat-2.15/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/metabat-2.15 /build/metabat-2.15/src /build/metabat-2.15/obj-x86_64-linux-gnu /build/metabat-2.15/obj-x86_64-linux-gnu/src /build/metabat-2.15/obj-x86_64-linux-gnu/src/CMakeFiles/contigOverlaps.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/metabat-2.15/obj-x86_64-linux-gnu' -make -f src/CMakeFiles/contigOverlaps.dir/build.make src/CMakeFiles/contigOverlaps.dir/build -make[3]: Leaving directory '/build/metabat-2.15/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/metabat-2.15/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/metabat-2.15/obj-x86_64-linux-gnu' make -f src/CMakeFiles/metabat1.dir/build.make src/CMakeFiles/metabat1.dir/build +make[3]: Entering directory '/build/metabat-2.15/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/metabat-2.15/obj-x86_64-linux-gnu' make -f src/CMakeFiles/metabat2.dir/build.make src/CMakeFiles/metabat2.dir/build make[3]: Leaving directory '/build/metabat-2.15/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/metabat-2.15/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/metabat-2.15/obj-x86_64-linux-gnu' make -f src/CMakeFiles/jgi_summarize_bam_contig_depths.dir/build.make src/CMakeFiles/jgi_summarize_bam_contig_depths.dir/build make[3]: Entering directory '/build/metabat-2.15/obj-x86_64-linux-gnu' +make -f src/CMakeFiles/contigOverlaps.dir/build.make src/CMakeFiles/contigOverlaps.dir/build make[3]: Entering directory '/build/metabat-2.15/obj-x86_64-linux-gnu' -[ 12%] Building CXX object src/CMakeFiles/contigOverlaps.dir/contigOverlaps.cpp.o -cd /build/metabat-2.15/obj-x86_64-linux-gnu/src && /usr/bin/c++ -D_XOPEN_SOURCE=700 -I/build/metabat-2.15/obj-x86_64-linux-gnu -I/build/metabat-2.15 -g -O2 -ffile-prefix-map=/build/metabat-2.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=c++11 -MD -MT src/CMakeFiles/contigOverlaps.dir/contigOverlaps.cpp.o -MF CMakeFiles/contigOverlaps.dir/contigOverlaps.cpp.o.d -o CMakeFiles/contigOverlaps.dir/contigOverlaps.cpp.o -c /build/metabat-2.15/src/contigOverlaps.cpp +[ 12%] Building CXX object src/CMakeFiles/metabat1.dir/metabat1.cpp.o +[ 25%] Building CXX object src/CMakeFiles/metabat2.dir/metabat2.cpp.o +cd /build/metabat-2.15/obj-x86_64-linux-gnu/src && /usr/bin/c++ -D_XOPEN_SOURCE=700 -I/build/metabat-2.15/obj-x86_64-linux-gnu -I/build/metabat-2.15 -g -O2 -ffile-prefix-map=/build/metabat-2.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=c++11 -MD -MT src/CMakeFiles/metabat1.dir/metabat1.cpp.o -MF CMakeFiles/metabat1.dir/metabat1.cpp.o.d -o CMakeFiles/metabat1.dir/metabat1.cpp.o -c /build/metabat-2.15/src/metabat1.cpp +cd /build/metabat-2.15/obj-x86_64-linux-gnu/src && /usr/bin/c++ -D_XOPEN_SOURCE=700 -I/build/metabat-2.15/obj-x86_64-linux-gnu -I/build/metabat-2.15 -g -O2 -ffile-prefix-map=/build/metabat-2.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=c++11 -MD -MT src/CMakeFiles/metabat2.dir/metabat2.cpp.o -MF CMakeFiles/metabat2.dir/metabat2.cpp.o.d -o CMakeFiles/metabat2.dir/metabat2.cpp.o -c /build/metabat-2.15/src/metabat2.cpp [ 37%] Building CXX object src/CMakeFiles/jgi_summarize_bam_contig_depths.dir/jgi_summarize_bam_contig_depths.cpp.o -[ 37%] Building CXX object src/CMakeFiles/metabat2.dir/metabat2.cpp.o -[ 50%] Building CXX object src/CMakeFiles/metabat1.dir/metabat1.cpp.o +[ 50%] Building CXX object src/CMakeFiles/contigOverlaps.dir/contigOverlaps.cpp.o +cd /build/metabat-2.15/obj-x86_64-linux-gnu/src && /usr/bin/c++ -D_XOPEN_SOURCE=700 -I/build/metabat-2.15/obj-x86_64-linux-gnu -I/build/metabat-2.15 -g -O2 -ffile-prefix-map=/build/metabat-2.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=c++11 -MD -MT src/CMakeFiles/contigOverlaps.dir/contigOverlaps.cpp.o -MF CMakeFiles/contigOverlaps.dir/contigOverlaps.cpp.o.d -o CMakeFiles/contigOverlaps.dir/contigOverlaps.cpp.o -c /build/metabat-2.15/src/contigOverlaps.cpp cd /build/metabat-2.15/obj-x86_64-linux-gnu/src && /usr/bin/c++ -D_XOPEN_SOURCE=700 -I/build/metabat-2.15/obj-x86_64-linux-gnu -I/build/metabat-2.15 -g -O2 -ffile-prefix-map=/build/metabat-2.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=c++11 -MD -MT src/CMakeFiles/jgi_summarize_bam_contig_depths.dir/jgi_summarize_bam_contig_depths.cpp.o -MF CMakeFiles/jgi_summarize_bam_contig_depths.dir/jgi_summarize_bam_contig_depths.cpp.o.d -o CMakeFiles/jgi_summarize_bam_contig_depths.dir/jgi_summarize_bam_contig_depths.cpp.o -c /build/metabat-2.15/src/jgi_summarize_bam_contig_depths.cpp -cd /build/metabat-2.15/obj-x86_64-linux-gnu/src && /usr/bin/c++ -D_XOPEN_SOURCE=700 -I/build/metabat-2.15/obj-x86_64-linux-gnu -I/build/metabat-2.15 -g -O2 -ffile-prefix-map=/build/metabat-2.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=c++11 -MD -MT src/CMakeFiles/metabat2.dir/metabat2.cpp.o -MF CMakeFiles/metabat2.dir/metabat2.cpp.o.d -o CMakeFiles/metabat2.dir/metabat2.cpp.o -c /build/metabat-2.15/src/metabat2.cpp -cd /build/metabat-2.15/obj-x86_64-linux-gnu/src && /usr/bin/c++ -D_XOPEN_SOURCE=700 -I/build/metabat-2.15/obj-x86_64-linux-gnu -I/build/metabat-2.15 -g -O2 -ffile-prefix-map=/build/metabat-2.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=c++11 -MD -MT src/CMakeFiles/metabat1.dir/metabat1.cpp.o -MF CMakeFiles/metabat1.dir/metabat1.cpp.o.d -o CMakeFiles/metabat1.dir/metabat1.cpp.o -c /build/metabat-2.15/src/metabat1.cpp In file included from /build/metabat-2.15/src/jgi_summarize_bam_contig_depths.h:35, from /build/metabat-2.15/src/jgi_summarize_bam_contig_depths.cpp:5: /build/metabat-2.15/src/BamUtils.h: In member function ‘bam1_t* BamCache::getBam(const bam1_t*)’: @@ -919,10 +905,10 @@ make[1]: Entering directory '/build/metabat-2.15' cp -a test/contigs_depth.txt obj-x86_64-linux-gnu dh_auto_test - cd obj-x86_64-linux-gnu && make -j16 test ARGS\+=--verbose ARGS\+=-j16 + cd obj-x86_64-linux-gnu && make -j15 test ARGS\+=--verbose ARGS\+=-j15 make[2]: Entering directory '/build/metabat-2.15/obj-x86_64-linux-gnu' Running tests... -/usr/bin/ctest --force-new-ctest-process --verbose -j16 +/usr/bin/ctest --force-new-ctest-process --verbose -j15 UpdateCTestConfiguration from :/build/metabat-2.15/obj-x86_64-linux-gnu/DartConfiguration.tcl UpdateCTestConfiguration from :/build/metabat-2.15/obj-x86_64-linux-gnu/DartConfiguration.tcl Test project /build/metabat-2.15/obj-x86_64-linux-gnu @@ -956,13 +942,13 @@ 1: Output matrix to /build/metabat-2.15/obj-x86_64-linux-gnu/contigs_depth.txt 1: Reading reference fasta file: /build/metabat-2.15/test/contigs.fa 1: ... 1 sequences +1: 0: Opening bam: /build/metabat-2.15/test/contigs-1000.fastq.bam 2: MetaBAT 1 (nosha) using p1 90.0%, p2 90.0%, p3 95.0%, minProb 80.0%, minBinned 40%, minCV 1.0, minContig 2500, minContigByCorr 1000, minCorr 92%, paired 0, and 20 bootstrapping 2: [00:00:00] Finished reading 1 contigs. Number of target contigs >= 2500 are 1, and [1000 and 2500) are 0 2: [00:00:00] Finished reading 1 contigs (using 1 including 0 short contigs) and 1 coverages from /build/metabat-2.15/obj-x86_64-linux-gnu/contigs_depth.txt 2: [Info] Correlation binning won't be applied since the number of samples (1) < minSamples (10) -3: MetaBAT 2 (nosha) using minContig 2500, minCV 1.0, minCVSum 1.0, maxP 95%, minS 60, maxEdges 200 and minClsSize 200000. with random seed=1720033677 -3: [00:00:00] Executing with 16 threads -1: 0: Opening bam: /build/metabat-2.15/test/contigs-1000.fastq.bam +3: MetaBAT 2 (nosha) using minContig 2500, minCV 1.0, minCVSum 1.0, maxP 95%, minS 60, maxEdges 200 and minClsSize 200000. with random seed=1685623735 +3: [00:00:00] Executing with 15 threads 3: [00:00:00] Parsing abundance file 3: [00:00:00] Parsing assembly file 3: [00:00:00] Number of large contigs >= 2500 are 1. @@ -971,27 +957,27 @@ 3: [00:00:00] Number of target contigs: 1 of large (>= 2500) and 0 of small ones (>=1000 & <2500). 2: [00:00:00] Finished TNF calculation. 1: Processing bam files -2: [00:00:00] Finished building a probabilistic graph. (1 vertices and 0 edges) 3: [00:00:00] Start TNF calculation. nobs = 1 +2: [00:00:00] Finished building a probabilistic graph. (1 vertices and 0 edges) 3: [00:00:00] Finished TNF calculation. 1: Thread 0 finished: contigs-1000.fastq.bam with 1000 reads and 1000 readsWellMapped 1: Creating depth matrix file: /build/metabat-2.15/obj-x86_64-linux-gnu/contigs_depth.txt 1: Closing most bam files 1: Closing last bam file 1: Finished -1/3 Test #1: test_depths ...................... Passed 0.19 sec -2: [00:00:00] Bootstrapping 1/20 [-191.7Gb / 47.0Gb] [00:00:00] Bootstrapping 2/20 [-191.6Gb / 47.0Gb] [00:00:00] Bootstrapping 3/20 [-191.6Gb / 47.0Gb] [00:00:00] Bootstrapping 4/20 [-191.6Gb / 47.0Gb] [00:00:00] Bootstrapping 5/20 [-191.6Gb / 47.0Gb] [00:00:00] Bootstrapping 6/20 [-191.6Gb / 47.0Gb] [00:00:00] Bootstrapping 7/20 [-191.6Gb / 47.0Gb] [00:00:00] Bootstrapping 8/20 [-191.6Gb / 47.0Gb] [00:00:00] Bootstrapping 9/20 [-191.6Gb / 47.0Gb] [00:00:00] Bootstrapping 10/20 [-191.6Gb / 47.0Gb] [00:00:01] Bootstrapping 11/20 [-191.6Gb / 47.0Gb] [00:00:01] Bootstrapping 12/20 [-191.6Gb / 47.0Gb] [00:00:01] Bootstrapping 13/20 [-191.6Gb / 47.0Gb] [00:00:01] Bootstrapping 14/20 [-191.6Gb / 47.0Gb] [00:00:01] Bootstrapping 15/20 [-191.6Gb / 47.0Gb] [00:00:01] Bootstrapping 16/20 [-191.5Gb / 47.0Gb] [00:00:01] Bootstrapping 17/20 [-191.6Gb / 47.0Gb] [00:00:01] Bootstrapping 18/20 [-191.6Gb / 47.0Gb] [00:00:01] Bootstrapping 19/20 [-191.5Gb / 47.0Gb] [00:00:01] Bootstrapping 20/20 [-191.6Gb / 47.0Gb] [00:00:01] Bootstrapping 20/20 [-191.6Gb / 47.0Gb] +1/3 Test #1: test_depths ...................... Passed 0.16 sec +2: [00:00:00] Bootstrapping 1/20 [-176.7Gb / 47.0Gb] [00:00:00] Bootstrapping 2/20 [-176.7Gb / 47.0Gb] [00:00:00] Bootstrapping 3/20 [-176.6Gb / 47.0Gb] [00:00:00] Bootstrapping 4/20 [-176.6Gb / 47.0Gb] [00:00:00] Bootstrapping 5/20 [-176.6Gb / 47.0Gb] [00:00:00] Bootstrapping 6/20 [-176.6Gb / 47.0Gb] [00:00:00] Bootstrapping 7/20 [-176.6Gb / 47.0Gb] [00:00:00] Bootstrapping 8/20 [-176.6Gb / 47.0Gb] [00:00:00] Bootstrapping 9/20 [-176.6Gb / 47.0Gb] [00:00:00] Bootstrapping 10/20 [-176.6Gb / 47.0Gb] [00:00:00] Bootstrapping 11/20 [-176.6Gb / 47.0Gb] [00:00:01] Bootstrapping 12/20 [-176.6Gb / 47.0Gb] [00:00:01] Bootstrapping 13/20 [-176.6Gb / 47.0Gb] [00:00:01] Bootstrapping 14/20 [-176.6Gb / 47.0Gb] [00:00:01] Bootstrapping 15/20 [-176.5Gb / 47.0Gb] [00:00:01] Bootstrapping 16/20 [-176.5Gb / 47.0Gb] [00:00:01] Bootstrapping 17/20 [-176.5Gb / 47.0Gb] [00:00:01] Bootstrapping 18/20 [-176.5Gb / 47.0Gb] [00:00:01] Bootstrapping 19/20 [-176.5Gb / 47.0Gb] [00:00:01] Bootstrapping 20/20 [-176.5Gb / 47.0Gb] [00:00:01] Bootstrapping 20/20 [-176.5Gb / 47.0Gb] 2: [00:00:01] Saved bootstrap intermediate file (boot.15882508920828047290) for reuse in case of failure -2: [00:00:01] Building Ensemble Graph 0.0% (0 of 1), ETA -2562047788015215:-30:-8 [-191.6Gb / 47.0Gb] [00:00:01] Finished Ensemble Graph (1 vertices and 0 edges) [-191.6Gb / 47.0Gb] -2: [00:00:01] Starting Ensemble Binning [-191.6Gb / 47.0Gb] -2: [00:00:01] Running Ensemble Binning [-191.6Gb / 47.0Gb] [00:00:01] Running Ensemble Binning 1 [-191.5Gb / 47.0Gb] [00:00:01] Running Ensemble Binning 1 [-191.5Gb / 47.0Gb] -2: [00:00:01] Finished Ensemble Binning [-191.5Gb / 47.0Gb] +2: [00:00:01] Building Ensemble Graph 0.0% (0 of 1), ETA -2562047788015215:-30:-8 [-176.5Gb / 47.0Gb] [00:00:01] Finished Ensemble Graph (1 vertices and 0 edges) [-176.5Gb / 47.0Gb] +2: [00:00:01] Starting Ensemble Binning [-176.5Gb / 47.0Gb] +2: [00:00:01] Running Ensemble Binning [-176.5Gb / 47.0Gb] [00:00:01] Running Ensemble Binning 1 [-176.5Gb / 47.0Gb] [00:00:01] Running Ensemble Binning 1 [-176.5Gb / 47.0Gb] +2: [00:00:01] Finished Ensemble Binning [-176.5Gb / 47.0Gb] 2: [00:00:01] Cleaned up intermediate files 2: [00:00:01] 0.00% (0 out of 5404 bases) was binned. 2: Number of clusters formed: 0 -2/3 Test #2: test_metabat1 .................... Passed 1.86 sec -3: [00:00:00] Preparing TNF Graph Building [pTNF = 99.9; 0 / 1 (P = 0.00%) round 1] [00:00:00] Preparing TNF Graph Building [pTNF = 99.8; 0 / 1 (P = 0.00%) round 2] [00:00:00] Preparing TNF Graph Building [pTNF = 99.7; 0 / 1 (P = 0.00%) round 3] [00:00:00] Preparing TNF Graph Building [pTNF = 99.4; 0 / 1 (P = 0.00%) round 4] [00:00:00] Preparing TNF Graph Building [pTNF = 99.1; 0 / 1 (P = 0.00%) round 5] [00:00:00] Preparing TNF Graph Building [pTNF = 98.8; 0 / 1 (P = 0.00%) round 6] [00:00:00] Preparing TNF Graph Building [pTNF = 98.4; 0 / 1 (P = 0.00%) round 7] [00:00:00] Preparing TNF Graph Building [pTNF = 98.1; 0 / 1 (P = 0.00%) round 8] [00:00:00] Preparing TNF Graph Building [pTNF = 97.7; 0 / 1 (P = 0.00%) round 9] [00:00:00] Preparing TNF Graph Building [pTNF = 97.2; 0 / 1 (P = 0.00%) round 10] [00:00:00] Preparing TNF Graph Building [pTNF = 96.9; 0 / 1 (P = 0.00%) round 11] [00:00:00] Preparing TNF Graph Building [pTNF = 96.6; 0 / 1 (P = 0.00%) round 12] [00:00:00] Preparing TNF Graph Building [pTNF = 96.2; 0 / 1 (P = 0.00%) round 13] [00:00:00] Preparing TNF Graph Building [pTNF = 95.9; 0 / 1 (P = 0.00%) round 14] [00:00:01] Preparing TNF Graph Building [pTNF = 95.4; 0 / 1 (P = 0.00%) round 15] [00:00:01] Preparing TNF Graph Building [pTNF = 95.1; 0 / 1 (P = 0.00%) round 16] [00:00:01] Preparing TNF Graph Building [pTNF = 94.7; 0 / 1 (P = 0.00%) round 17] [00:00:01] Preparing TNF Graph Building [pTNF = 94.3; 0 / 1 (P = 0.00%) round 18] [00:00:01] Preparing TNF Graph Building [pTNF = 94.0; 0 / 1 (P = 0.00%) round 19] [00:00:01] Preparing TNF Graph Building [pTNF = 93.6; 0 / 1 (P = 0.00%) round 20] [00:00:01] Preparing TNF Graph Building [pTNF = 93.1; 0 / 1 (P = 0.00%) round 21] [00:00:01] Preparing TNF Graph Building [pTNF = 92.7; 0 / 1 (P = 0.00%) round 22] [00:00:01] Preparing TNF Graph Building [pTNF = 92.2; 0 / 1 (P = 0.00%) round 23] [00:00:01] Preparing TNF Graph Building [pTNF = 91.7; 0 / 1 (P = 0.00%) round 24] [00:00:01] Preparing TNF Graph Building [pTNF = 91.3; 0 / 1 (P = 0.00%) round 25] [00:00:01] Preparing TNF Graph Building [pTNF = 90.9; 0 / 1 (P = 0.00%) round 26] [00:00:01] Preparing TNF Graph Building [pTNF = 90.4; 0 / 1 (P = 0.00%) round 27] [00:00:01] Preparing TNF Graph Building [pTNF = 90.1; 0 / 1 (P = 0.00%) round 28] [00:00:01] Preparing TNF Graph Building [pTNF = 89.8; 0 / 1 (P = 0.00%) round 29] [00:00:01] Preparing TNF Graph Building [pTNF = 88.8; 0 / 1 (P = 0.00%) round 30] [00:00:01] Preparing TNF Graph Building [pTNF = 87.8; 0 / 1 (P = 0.00%) round 31] [00:00:01] Preparing TNF Graph Building [pTNF = 86.9; 0 / 1 (P = 0.00%) round 32] [00:00:01] Preparing TNF Graph Building [pTNF = 85.9; 0 / 1 (P = 0.00%) round 33] [00:00:02] Preparing TNF Graph Building [pTNF = 85.0; 0 / 1 (P = 0.00%) round 34] [00:00:02] Preparing TNF Graph Building [pTNF = 83.9; 0 / 1 (P = 0.00%) round 35] [00:00:02] Preparing TNF Graph Building [pTNF = 82.8; 0 / 1 (P = 0.00%) round 36] [00:00:02] Preparing TNF Graph Building [pTNF = 81.9; 0 / 1 (P = 0.00%) round 37] [00:00:02] Preparing TNF Graph Building [pTNF = 81.0; 0 / 1 (P = 0.00%) round 38] [00:00:02] Preparing TNF Graph Building [pTNF = 79.9; 0 / 1 (P = 0.00%) round 39] [00:00:02] Preparing TNF Graph Building [pTNF = 78.8; 0 / 1 (P = 0.00%) round 40] [00:00:02] Preparing TNF Graph Building [pTNF = 77.8; 0 / 1 (P = 0.00%) round 41] [00:00:02] Preparing TNF Graph Building [pTNF = 76.7; 0 / 1 (P = 0.00%) round 42] [00:00:02] Preparing TNF Graph Building [pTNF = 75.8; 0 / 1 (P = 0.00%) round 43] [00:00:02] Preparing TNF Graph Building [pTNF = 74.9; 0 / 1 (P = 0.00%) round 44] [00:00:02] Preparing TNF Graph Building [pTNF = 73.9; 0 / 1 (P = 0.00%) round 45] [00:00:02] Preparing TNF Graph Building [pTNF = 72.9; 0 / 1 (P = 0.00%) round 46] [00:00:02] Preparing TNF Graph Building [pTNF = 72.0; 0 / 1 (P = 0.00%) round 47] [00:00:02] Preparing TNF Graph Building [pTNF = 70.9; 0 / 1 (P = 0.00%) round 48] [00:00:02] Finished Preparing TNF Graph Building [pTNF = 69.80] -3: [00:00:02] Building TNF Graph 8900.0% (89 of 1), ETA 0:00:00 [-191.5Gb / 47.0Gb] [00:00:02] Finished Building TNF Graph (0 edges) [-191.5Gb / 47.0Gb] +2/3 Test #2: test_metabat1 .................... Passed 1.80 sec +3: [00:00:00] Preparing TNF Graph Building [pTNF = 99.9; 0 / 1 (P = 0.00%) round 1] [00:00:00] Preparing TNF Graph Building [pTNF = 99.6; 0 / 1 (P = 0.00%) round 2] [00:00:00] Preparing TNF Graph Building [pTNF = 99.3; 0 / 1 (P = 0.00%) round 3] [00:00:00] Preparing TNF Graph Building [pTNF = 99.2; 0 / 1 (P = 0.00%) round 4] [00:00:00] Preparing TNF Graph Building [pTNF = 99.1; 0 / 1 (P = 0.00%) round 5] [00:00:00] Preparing TNF Graph Building [pTNF = 99.0; 0 / 1 (P = 0.00%) round 6] [00:00:00] Preparing TNF Graph Building [pTNF = 98.6; 0 / 1 (P = 0.00%) round 7] [00:00:00] Preparing TNF Graph Building [pTNF = 98.2; 0 / 1 (P = 0.00%) round 8] [00:00:00] Preparing TNF Graph Building [pTNF = 97.9; 0 / 1 (P = 0.00%) round 9] [00:00:00] Preparing TNF Graph Building [pTNF = 97.5; 0 / 1 (P = 0.00%) round 10] [00:00:00] Preparing TNF Graph Building [pTNF = 97.2; 0 / 1 (P = 0.00%) round 11] [00:00:00] Preparing TNF Graph Building [pTNF = 96.7; 0 / 1 (P = 0.00%) round 12] [00:00:00] Preparing TNF Graph Building [pTNF = 96.3; 0 / 1 (P = 0.00%) round 13] [00:00:00] Preparing TNF Graph Building [pTNF = 96.0; 0 / 1 (P = 0.00%) round 14] [00:00:00] Preparing TNF Graph Building [pTNF = 95.5; 0 / 1 (P = 0.00%) round 15] [00:00:00] Preparing TNF Graph Building [pTNF = 95.1; 0 / 1 (P = 0.00%) round 16] [00:00:01] Preparing TNF Graph Building [pTNF = 94.7; 0 / 1 (P = 0.00%) round 17] [00:00:01] Preparing TNF Graph Building [pTNF = 94.2; 0 / 1 (P = 0.00%) round 18] [00:00:01] Preparing TNF Graph Building [pTNF = 93.9; 0 / 1 (P = 0.00%) round 19] [00:00:01] Preparing TNF Graph Building [pTNF = 93.5; 0 / 1 (P = 0.00%) round 20] [00:00:01] Preparing TNF Graph Building [pTNF = 93.0; 0 / 1 (P = 0.00%) round 21] [00:00:01] Preparing TNF Graph Building [pTNF = 92.7; 0 / 1 (P = 0.00%) round 22] [00:00:01] Preparing TNF Graph Building [pTNF = 92.4; 0 / 1 (P = 0.00%) round 23] [00:00:01] Preparing TNF Graph Building [pTNF = 91.9; 0 / 1 (P = 0.00%) round 24] [00:00:01] Preparing TNF Graph Building [pTNF = 91.4; 0 / 1 (P = 0.00%) round 25] [00:00:01] Preparing TNF Graph Building [pTNF = 91.1; 0 / 1 (P = 0.00%) round 26] [00:00:01] Preparing TNF Graph Building [pTNF = 90.7; 0 / 1 (P = 0.00%) round 27] [00:00:01] Preparing TNF Graph Building [pTNF = 90.3; 0 / 1 (P = 0.00%) round 28] [00:00:01] Preparing TNF Graph Building [pTNF = 90.0; 0 / 1 (P = 0.00%) round 29] [00:00:01] Preparing TNF Graph Building [pTNF = 89.1; 0 / 1 (P = 0.00%) round 30] [00:00:01] Preparing TNF Graph Building [pTNF = 88.2; 0 / 1 (P = 0.00%) round 31] [00:00:01] Preparing TNF Graph Building [pTNF = 87.2; 0 / 1 (P = 0.00%) round 32] [00:00:01] Preparing TNF Graph Building [pTNF = 86.3; 0 / 1 (P = 0.00%) round 33] [00:00:01] Preparing TNF Graph Building [pTNF = 85.4; 0 / 1 (P = 0.00%) round 34] [00:00:01] Preparing TNF Graph Building [pTNF = 84.4; 0 / 1 (P = 0.00%) round 35] [00:00:02] Preparing TNF Graph Building [pTNF = 83.5; 0 / 1 (P = 0.00%) round 36] [00:00:02] Preparing TNF Graph Building [pTNF = 82.6; 0 / 1 (P = 0.00%) round 37] [00:00:02] Preparing TNF Graph Building [pTNF = 81.6; 0 / 1 (P = 0.00%) round 38] [00:00:02] Preparing TNF Graph Building [pTNF = 80.7; 0 / 1 (P = 0.00%) round 39] [00:00:02] Preparing TNF Graph Building [pTNF = 79.6; 0 / 1 (P = 0.00%) round 40] [00:00:02] Preparing TNF Graph Building [pTNF = 78.5; 0 / 1 (P = 0.00%) round 41] [00:00:02] Preparing TNF Graph Building [pTNF = 77.5; 0 / 1 (P = 0.00%) round 42] [00:00:02] Preparing TNF Graph Building [pTNF = 76.5; 0 / 1 (P = 0.00%) round 43] [00:00:02] Preparing TNF Graph Building [pTNF = 75.4; 0 / 1 (P = 0.00%) round 44] [00:00:02] Preparing TNF Graph Building [pTNF = 74.4; 0 / 1 (P = 0.00%) round 45] [00:00:02] Preparing TNF Graph Building [pTNF = 73.4; 0 / 1 (P = 0.00%) round 46] [00:00:02] Preparing TNF Graph Building [pTNF = 72.4; 0 / 1 (P = 0.00%) round 47] [00:00:02] Preparing TNF Graph Building [pTNF = 71.5; 0 / 1 (P = 0.00%) round 48] [00:00:02] Preparing TNF Graph Building [pTNF = 70.5; 0 / 1 (P = 0.00%) round 49] [00:00:02] Finished Preparing TNF Graph Building [pTNF = 69.60] +3: [00:00:02] Finished Building TNF Graph (0 edges) [-176.4Gb / 47.0Gb] 3: No edges were formed by TNF. 3: [00:00:02] Rescuing singleton large contigs 3: [00:00:02] There are 0 bins already @@ -999,17 +985,17 @@ 3: [00:00:02] -nan% (0 bases) of large (>=2500) and 0.00% (0 bases) of small (<2500) contigs were binned. 3: 0 bins (0 bases in total) formed. 3: [00:00:02] Finished -3/3 Test #3: test_metabat2 .................... Passed 2.56 sec +3/3 Test #3: test_metabat2 .................... Passed 2.69 sec 100% tests passed, 0 tests failed out of 3 -Total Test time (real) = 2.59 sec +Total Test time (real) = 2.72 sec make[2]: Leaving directory '/build/metabat-2.15/obj-x86_64-linux-gnu' make[1]: Leaving directory '/build/metabat-2.15' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/metabat/ - cd obj-x86_64-linux-gnu && make -j16 install DESTDIR=/build/metabat-2.15/debian/metabat AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-x86_64-linux-gnu && make -j15 install DESTDIR=/build/metabat-2.15/debian/metabat AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/metabat-2.15/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/metabat-2.15 -B/build/metabat-2.15/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -1060,8 +1046,8 @@ dpkg-gencontrol: warning: package metabat: substitution variable ${perl:Depends} unused, but is defined dh_md5sums dh_builddeb -dpkg-deb: building package 'metabat' in '../metabat_2.15-4_amd64.deb'. dpkg-deb: building package 'metabat-dbgsym' in '../metabat-dbgsym_2.15-4_amd64.deb'. +dpkg-deb: building package 'metabat' in '../metabat_2.15-4_amd64.deb'. dpkg-genbuildinfo --build=binary -O../metabat_2.15-4_amd64.buildinfo dpkg-genchanges --build=binary -O../metabat_2.15-4_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -1069,12 +1055,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3382159/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3382159/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1580468 and its subdirectories -I: Current time: Wed Jul 3 07:08:17 -12 2024 -I: pbuilder-time-stamp: 1720033697 +I: removing directory /srv/workspace/pbuilder/3382159 and its subdirectories +I: Current time: Fri Jun 2 02:49:36 +14 2023 +I: pbuilder-time-stamp: 1685623776