Diff of the two buildlogs: -- --- b1/build.log 2023-05-20 08:37:06.086352651 +0000 +++ b2/build.log 2023-05-20 08:42:58.130927034 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Jun 21 02:51:10 -12 2024 -I: pbuilder-time-stamp: 1718981470 +I: Current time: Sat May 20 22:37:07 +14 2023 +I: pbuilder-time-stamp: 1684571827 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -16,7 +16,7 @@ I: copying [./cmtk_3.3.1p2+dfsg.orig.tar.xz] I: copying [./cmtk_3.3.1p2+dfsg-2.debian.tar.xz] I: Extracting source -gpgv: Signature made Wed May 11 19:39:02 2022 -12 +gpgv: Signature made Thu May 12 21:39:02 2022 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -31,135 +31,167 @@ dpkg-source: info: applying dcmtk-3.6.1-compatibility I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2055053/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1278153/tmp/hooks/D01_modify_environment starting +debug: Running on ionos11-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 May 20 22:37 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1278153/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1278153/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16 ' - DISTRIBUTION='bookworm' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.15(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15 ' + DIRSTACK=() + DISTRIBUTION=bookworm + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='26d7dd020b524e21835105e5937c0007' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2055053' - PS1='# ' - PS2='> ' + INVOCATION_ID=1e16f4f078bc4310b59439754fc0667d + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1278153 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.VaDnYDt2/pbuilderrc_RDsC --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.VaDnYDt2/b1 --logfile b1/build.log cmtk_3.3.1p2+dfsg-2.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://85.184.249.68:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.VaDnYDt2/pbuilderrc_6zt7 --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.VaDnYDt2/b2 --logfile b2/build.log --extrapackages usrmerge cmtk_3.3.1p2+dfsg-2.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://78.137.99.97:3128 I: uname -a - Linux ionos5-amd64 6.1.0-0.deb11.6-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.15-1~bpo11+1 (2023-03-16) x86_64 GNU/Linux + Linux i-capture-the-hostname 5.10.0-23-amd64 #1 SMP Debian 5.10.179-1 (2023-05-12) x86_64 GNU/Linux I: ls -l /bin total 5632 - -rwxr-xr-x 1 root root 1265648 Apr 23 2023 bash - -rwxr-xr-x 3 root root 39224 Sep 18 2022 bunzip2 - -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzcat - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep - -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzip2 - -rwxr-xr-x 1 root root 14568 Sep 18 2022 bzip2recover - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore - -rwxr-xr-x 1 root root 44016 Sep 20 2022 cat - -rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp - -rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod - -rwxr-xr-x 1 root root 72752 Sep 20 2022 chown - -rwxr-xr-x 1 root root 151152 Sep 20 2022 cp - -rwxr-xr-x 1 root root 125640 Jan 5 2023 dash - -rwxr-xr-x 1 root root 121904 Sep 20 2022 date - -rwxr-xr-x 1 root root 89240 Sep 20 2022 dd - -rwxr-xr-x 1 root root 102200 Sep 20 2022 df - -rwxr-xr-x 1 root root 151344 Sep 20 2022 dir - -rwxr-xr-x 1 root root 88656 Mar 22 2023 dmesg - lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname - -rwxr-xr-x 1 root root 43856 Sep 20 2022 echo - -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep - -rwxr-xr-x 1 root root 35664 Sep 20 2022 false - -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep - -rwxr-xr-x 1 root root 85600 Mar 22 2023 findmnt - -rwsr-xr-x 1 root root 35128 Mar 22 2023 fusermount - -rwxr-xr-x 1 root root 203152 Jan 24 2023 grep - -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip - -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe - -rwxr-xr-x 1 root root 98136 Apr 9 2022 gzip - -rwxr-xr-x 1 root root 22680 Dec 19 2022 hostname - -rwxr-xr-x 1 root root 72824 Sep 20 2022 ln - -rwxr-xr-x 1 root root 53024 Mar 23 2023 login - -rwxr-xr-x 1 root root 151344 Sep 20 2022 ls - -rwxr-xr-x 1 root root 207168 Mar 22 2023 lsblk - -rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir - -rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod - -rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp - -rwxr-xr-x 1 root root 59712 Mar 22 2023 more - -rwsr-xr-x 1 root root 59704 Mar 22 2023 mount - -rwxr-xr-x 1 root root 18744 Mar 22 2023 mountpoint - -rwxr-xr-x 1 root root 142968 Sep 20 2022 mv - lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 2 2023 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd - lrwxrwxrwx 1 root root 4 Apr 23 2023 rbash -> bash - -rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink - -rwxr-xr-x 1 root root 72752 Sep 20 2022 rm - -rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir - -rwxr-xr-x 1 root root 27560 Nov 2 2022 run-parts - -rwxr-xr-x 1 root root 126424 Jan 5 2023 sed - lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash - -rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep - -rwxr-xr-x 1 root root 85008 Sep 20 2022 stty - -rwsr-xr-x 1 root root 72000 Mar 22 2023 su - -rwxr-xr-x 1 root root 39824 Sep 20 2022 sync - -rwxr-xr-x 1 root root 531984 Apr 6 2023 tar - -rwxr-xr-x 1 root root 14520 Nov 2 2022 tempfile - -rwxr-xr-x 1 root root 109616 Sep 20 2022 touch - -rwxr-xr-x 1 root root 35664 Sep 20 2022 true - -rwxr-xr-x 1 root root 14568 Mar 22 2023 ulockmgr_server - -rwsr-xr-x 1 root root 35128 Mar 22 2023 umount - -rwxr-xr-x 1 root root 43888 Sep 20 2022 uname - -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress - -rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir - -rwxr-xr-x 1 root root 72024 Mar 22 2023 wdctl - lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat - -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp - -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff - -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep - -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep - -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce - -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep - -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless - -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore - -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew -I: user script /srv/workspace/pbuilder/2055053/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1265648 Apr 24 11:23 bash + -rwxr-xr-x 3 root root 39224 Sep 19 2022 bunzip2 + -rwxr-xr-x 3 root root 39224 Sep 19 2022 bzcat + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4893 Nov 28 2021 bzexe + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep + -rwxr-xr-x 3 root root 39224 Sep 19 2022 bzip2 + -rwxr-xr-x 1 root root 14568 Sep 19 2022 bzip2recover + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore + -rwxr-xr-x 1 root root 44016 Sep 21 2022 cat + -rwxr-xr-x 1 root root 68656 Sep 21 2022 chgrp + -rwxr-xr-x 1 root root 64496 Sep 21 2022 chmod + -rwxr-xr-x 1 root root 72752 Sep 21 2022 chown + -rwxr-xr-x 1 root root 151152 Sep 21 2022 cp + -rwxr-xr-x 1 root root 125640 Jan 6 03:20 dash + -rwxr-xr-x 1 root root 121904 Sep 21 2022 date + -rwxr-xr-x 1 root root 89240 Sep 21 2022 dd + -rwxr-xr-x 1 root root 102200 Sep 21 2022 df + -rwxr-xr-x 1 root root 151344 Sep 21 2022 dir + -rwxr-xr-x 1 root root 88656 Mar 24 00:02 dmesg + lrwxrwxrwx 1 root root 8 Dec 20 03:33 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Dec 20 03:33 domainname -> hostname + -rwxr-xr-x 1 root root 43856 Sep 21 2022 echo + -rwxr-xr-x 1 root root 41 Jan 25 04:43 egrep + -rwxr-xr-x 1 root root 35664 Sep 21 2022 false + -rwxr-xr-x 1 root root 41 Jan 25 04:43 fgrep + -rwxr-xr-x 1 root root 85600 Mar 24 00:02 findmnt + -rwsr-xr-x 1 root root 35128 Mar 23 22:35 fusermount + -rwxr-xr-x 1 root root 203152 Jan 25 04:43 grep + -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip + -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe + -rwxr-xr-x 1 root root 98136 Apr 10 2022 gzip + -rwxr-xr-x 1 root root 22680 Dec 20 03:33 hostname + -rwxr-xr-x 1 root root 72824 Sep 21 2022 ln + -rwxr-xr-x 1 root root 53024 Mar 24 02:40 login + -rwxr-xr-x 1 root root 151344 Sep 21 2022 ls + -rwxr-xr-x 1 root root 207168 Mar 24 00:02 lsblk + -rwxr-xr-x 1 root root 97552 Sep 21 2022 mkdir + -rwxr-xr-x 1 root root 72912 Sep 21 2022 mknod + -rwxr-xr-x 1 root root 43952 Sep 21 2022 mktemp + -rwxr-xr-x 1 root root 59712 Mar 24 00:02 more + -rwsr-xr-x 1 root root 59704 Mar 24 00:02 mount + -rwxr-xr-x 1 root root 18744 Mar 24 00:02 mountpoint + -rwxr-xr-x 1 root root 142968 Sep 21 2022 mv + lrwxrwxrwx 1 root root 8 Dec 20 03:33 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 3 20:25 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 43952 Sep 21 2022 pwd + lrwxrwxrwx 1 root root 4 Apr 24 11:23 rbash -> bash + -rwxr-xr-x 1 root root 52112 Sep 21 2022 readlink + -rwxr-xr-x 1 root root 72752 Sep 21 2022 rm + -rwxr-xr-x 1 root root 56240 Sep 21 2022 rmdir + -rwxr-xr-x 1 root root 27560 Nov 3 2022 run-parts + -rwxr-xr-x 1 root root 126424 Jan 6 09:55 sed + lrwxrwxrwx 1 root root 9 May 20 22:37 sh -> /bin/bash + -rwxr-xr-x 1 root root 43888 Sep 21 2022 sleep + -rwxr-xr-x 1 root root 85008 Sep 21 2022 stty + -rwsr-xr-x 1 root root 72000 Mar 24 00:02 su + -rwxr-xr-x 1 root root 39824 Sep 21 2022 sync + -rwxr-xr-x 1 root root 531984 Apr 7 04:25 tar + -rwxr-xr-x 1 root root 14520 Nov 3 2022 tempfile + -rwxr-xr-x 1 root root 109616 Sep 21 2022 touch + -rwxr-xr-x 1 root root 35664 Sep 21 2022 true + -rwxr-xr-x 1 root root 14568 Mar 23 22:35 ulockmgr_server + -rwsr-xr-x 1 root root 35128 Mar 24 00:02 umount + -rwxr-xr-x 1 root root 43888 Sep 21 2022 uname + -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress + -rwxr-xr-x 1 root root 151344 Sep 21 2022 vdir + -rwxr-xr-x 1 root root 72024 Mar 24 00:02 wdctl + lrwxrwxrwx 1 root root 8 Dec 20 03:33 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat + -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp + -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff + -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep + -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep + -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce + -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep + -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless + -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore + -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew +I: user script /srv/workspace/pbuilder/1278153/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -386,7 +418,7 @@ Get: 149 http://deb.debian.org/debian bookworm/main amd64 xkb-data all 2.35.1-1 [764 kB] Get: 150 http://deb.debian.org/debian bookworm/main amd64 xserver-common all 2:21.1.7-3 [2382 kB] Get: 151 http://deb.debian.org/debian bookworm/main amd64 xvfb amd64 2:21.1.7-3 [3151 kB] -Fetched 114 MB in 3s (41.5 MB/s) +Fetched 114 MB in 6s (18.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19596 files and directories currently installed.) @@ -1006,8 +1038,19 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +usrmerge is already the newest version (35). +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/cmtk-3.3.1p2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../cmtk_3.3.1p2+dfsg-2_source.changes +I: user script /srv/workspace/pbuilder/1278153/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +removed '/etc/unsupported-skip-usrmerge-conversion' +The system has been successfully converted. +I: user script /srv/workspace/pbuilder/1278153/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/cmtk-3.3.1p2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../cmtk_3.3.1p2+dfsg-2_source.changes dpkg-buildpackage: info: source package cmtk dpkg-buildpackage: info: source version 3.3.1p2+dfsg-2 dpkg-buildpackage: info: source distribution unstable @@ -1129,7 +1172,7 @@ -- Check for ANSI scope - found -- Check for sstream -- Check for sstream - found --- System is Linux-6.1.0-0.deb11.6-amd64 +-- System is Linux-5.10.0-23-amd64 -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file execinfo.h @@ -1245,7 +1288,7 @@ -- Build files have been written to: /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/cmtk-3.3.1p2+dfsg' dh_auto_build - cd obj-x86_64-linux-gnu && make -j16 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-x86_64-linux-gnu && make -j15 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/cmtk-3.3.1p2+dfsg -B/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/CMakeFiles /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu//CMakeFiles/progress.marks @@ -1253,94 +1296,100 @@ make[2]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/build.make Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/depend make -f Utilities/mxml/CMakeFiles/cmtkMxml.dir/build.make Utilities/mxml/CMakeFiles/cmtkMxml.dir/depend -make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/Utilities/mxml /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/mxml /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/mxml/CMakeFiles/cmtkMxml.dir/DependInfo.cmake --color= make -f libs/Numerics/CMakeFiles/cmtkNumerics.dir/build.make libs/Numerics/CMakeFiles/cmtkNumerics.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/libs/Numerics /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Numerics /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Numerics/CMakeFiles/cmtkNumerics.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/Utilities/mxml /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/mxml /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/mxml/CMakeFiles/cmtkMxml.dir/DependInfo.cmake --color= +make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/build.make Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/build -make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' +make -f libs/Numerics/CMakeFiles/cmtkNumerics.dir/build.make libs/Numerics/CMakeFiles/cmtkNumerics.dir/build make -f Utilities/mxml/CMakeFiles/cmtkMxml.dir/build.make Utilities/mxml/CMakeFiles/cmtkMxml.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -make -f libs/Numerics/CMakeFiles/cmtkNumerics.dir/build.make libs/Numerics/CMakeFiles/cmtkNumerics.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[ 0%] Building C object Utilities/mxml/CMakeFiles/cmtkMxml.dir/mxml-attr.c.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/mxml && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkMxml_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/mxml -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/mxml/CMakeFiles/cmtkMxml.dir/mxml-attr.c.o -MF CMakeFiles/cmtkMxml.dir/mxml-attr.c.o.d -o CMakeFiles/cmtkMxml.dir/mxml-attr.c.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/mxml/mxml-attr.c -[ 0%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/comment.o -[ 0%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/enumsNrrd.o +make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' +[ 1%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/comment.o +[ 1%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/ap.cxx.o +[ 1%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/bdsvd.cxx.o +[ 1%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/enumsNrrd.o +[ 1%] Building C object Utilities/mxml/CMakeFiles/cmtkMxml.dir/mxml-index.c.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/comment.o -MF CMakeFiles/NrrdIO.dir/comment.o.d -o CMakeFiles/NrrdIO.dir/comment.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/comment.c -[ 0%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/mop.o -[ 1%] Building C object Utilities/mxml/CMakeFiles/cmtkMxml.dir/mxml-entity.c.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Numerics/CMakeFiles/cmtkNumerics.dir/ap.cxx.o -MF CMakeFiles/cmtkNumerics.dir/ap.cxx.o.d -o CMakeFiles/cmtkNumerics.dir/ap.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Numerics/ap.cxx +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/mxml && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkMxml_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/mxml -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/mxml/CMakeFiles/cmtkMxml.dir/mxml-index.c.o -MF CMakeFiles/cmtkMxml.dir/mxml-index.c.o.d -o CMakeFiles/cmtkMxml.dir/mxml-index.c.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/mxml/mxml-index.c cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/enumsNrrd.o -MF CMakeFiles/NrrdIO.dir/enumsNrrd.o.d -o CMakeFiles/NrrdIO.dir/enumsNrrd.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/enumsNrrd.c -[ 1%] Building C object Utilities/mxml/CMakeFiles/cmtkMxml.dir/mxml-index.c.o -[ 1%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/parseAir.o -[ 2%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/ap.cxx.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/mop.o -MF CMakeFiles/NrrdIO.dir/mop.o.d -o CMakeFiles/NrrdIO.dir/mop.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/mop.c -[ 2%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/bdsvd.cxx.o +[ 1%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/string.o +[ 1%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/blas.cxx.o +[ 1%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/bidiagonal.cxx.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Numerics/CMakeFiles/cmtkNumerics.dir/bdsvd.cxx.o -MF CMakeFiles/cmtkNumerics.dir/bdsvd.cxx.o.d -o CMakeFiles/cmtkNumerics.dir/bdsvd.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Numerics/bdsvd.cxx +[ 2%] Building C object Utilities/mxml/CMakeFiles/cmtkMxml.dir/mxml-entity.c.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/string.o -MF CMakeFiles/NrrdIO.dir/string.o.d -o CMakeFiles/NrrdIO.dir/string.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/string.c +[ 2%] Building C object Utilities/mxml/CMakeFiles/cmtkMxml.dir/mxml-attr.c.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/mxml && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkMxml_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/mxml -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/mxml/CMakeFiles/cmtkMxml.dir/mxml-entity.c.o -MF CMakeFiles/cmtkMxml.dir/mxml-entity.c.o.d -o CMakeFiles/cmtkMxml.dir/mxml-entity.c.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/mxml/mxml-entity.c +[ 2%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/mop.o +[ 2%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/754.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/mop.o -MF CMakeFiles/NrrdIO.dir/mop.o.d -o CMakeFiles/NrrdIO.dir/mop.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/mop.c +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Numerics/CMakeFiles/cmtkNumerics.dir/bidiagonal.cxx.o -MF CMakeFiles/cmtkNumerics.dir/bidiagonal.cxx.o.d -o CMakeFiles/cmtkNumerics.dir/bidiagonal.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Numerics/bidiagonal.cxx +[ 2%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/cholesky.cxx.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/754.o -MF CMakeFiles/NrrdIO.dir/754.o.d -o CMakeFiles/NrrdIO.dir/754.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/754.c +[ 2%] Building C object Utilities/mxml/CMakeFiles/cmtkMxml.dir/mxml-get.c.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/mxml && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkMxml_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/mxml -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/mxml/CMakeFiles/cmtkMxml.dir/mxml-attr.c.o -MF CMakeFiles/cmtkMxml.dir/mxml-attr.c.o.d -o CMakeFiles/cmtkMxml.dir/mxml-attr.c.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/mxml/mxml-attr.c +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Numerics/CMakeFiles/cmtkNumerics.dir/blas.cxx.o -MF CMakeFiles/cmtkNumerics.dir/blas.cxx.o.d -o CMakeFiles/cmtkNumerics.dir/blas.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Numerics/blas.cxx +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/mxml && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkMxml_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/mxml -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/mxml/CMakeFiles/cmtkMxml.dir/mxml-get.c.o -MF CMakeFiles/cmtkMxml.dir/mxml-get.c.o.d -o CMakeFiles/cmtkMxml.dir/mxml-get.c.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/mxml/mxml-get.c [ 2%] Building C object Utilities/mxml/CMakeFiles/cmtkMxml.dir/mxml-private.c.o -[ 3%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/defaultsNrrd.o -[ 3%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/string.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/mxml && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkMxml_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/mxml -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/mxml/CMakeFiles/cmtkMxml.dir/mxml-index.c.o -MF CMakeFiles/cmtkMxml.dir/mxml-index.c.o.d -o CMakeFiles/cmtkMxml.dir/mxml-index.c.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/mxml/mxml-index.c -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Numerics/CMakeFiles/cmtkNumerics.dir/ap.cxx.o -MF CMakeFiles/cmtkNumerics.dir/ap.cxx.o.d -o CMakeFiles/cmtkNumerics.dir/ap.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Numerics/ap.cxx cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/mxml && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkMxml_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/mxml -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/mxml/CMakeFiles/cmtkMxml.dir/mxml-private.c.o -MF CMakeFiles/cmtkMxml.dir/mxml-private.c.o.d -o CMakeFiles/cmtkMxml.dir/mxml-private.c.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/mxml/mxml-private.c +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Numerics/CMakeFiles/cmtkNumerics.dir/cholesky.cxx.o -MF CMakeFiles/cmtkNumerics.dir/cholesky.cxx.o.d -o CMakeFiles/cmtkNumerics.dir/cholesky.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Numerics/cholesky.cxx +[ 3%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/defaultsNrrd.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/defaultsNrrd.o -MF CMakeFiles/NrrdIO.dir/defaultsNrrd.o.d -o CMakeFiles/NrrdIO.dir/defaultsNrrd.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/defaultsNrrd.c -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Numerics/CMakeFiles/cmtkNumerics.dir/bdsvd.cxx.o -MF CMakeFiles/cmtkNumerics.dir/bdsvd.cxx.o.d -o CMakeFiles/cmtkNumerics.dir/bdsvd.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Numerics/bdsvd.cxx -[ 3%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/bidiagonal.cxx.o -[ 3%] Building C object Utilities/mxml/CMakeFiles/cmtkMxml.dir/mxml-get.c.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/string.o -MF CMakeFiles/NrrdIO.dir/string.o.d -o CMakeFiles/NrrdIO.dir/string.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/string.c -[ 3%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/754.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/mxml && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkMxml_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/mxml -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/mxml/CMakeFiles/cmtkMxml.dir/mxml-get.c.o -MF CMakeFiles/cmtkMxml.dir/mxml-get.c.o.d -o CMakeFiles/cmtkMxml.dir/mxml-get.c.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/mxml/mxml-get.c -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Numerics/CMakeFiles/cmtkNumerics.dir/bidiagonal.cxx.o -MF CMakeFiles/cmtkNumerics.dir/bidiagonal.cxx.o.d -o CMakeFiles/cmtkNumerics.dir/bidiagonal.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Numerics/bidiagonal.cxx [ 3%] Building C object Utilities/mxml/CMakeFiles/cmtkMxml.dir/mxml-set.c.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/parseAir.o -MF CMakeFiles/NrrdIO.dir/parseAir.o.d -o CMakeFiles/NrrdIO.dir/parseAir.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/parseAir.c -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/754.o -MF CMakeFiles/NrrdIO.dir/754.o.d -o CMakeFiles/NrrdIO.dir/754.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/754.c cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/mxml && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkMxml_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/mxml -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/mxml/CMakeFiles/cmtkMxml.dir/mxml-set.c.o -MF CMakeFiles/cmtkMxml.dir/mxml-set.c.o.d -o CMakeFiles/cmtkMxml.dir/mxml-set.c.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/mxml/mxml-set.c -[ 3%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/dio.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/dio.o -MF CMakeFiles/NrrdIO.dir/dio.o.d -o CMakeFiles/NrrdIO.dir/dio.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/dio.c -[ 4%] Building C object Utilities/mxml/CMakeFiles/cmtkMxml.dir/mxml-file.c.o +[ 4%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/det.cxx.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Numerics/CMakeFiles/cmtkNumerics.dir/det.cxx.o -MF CMakeFiles/cmtkNumerics.dir/det.cxx.o.d -o CMakeFiles/cmtkNumerics.dir/det.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Numerics/det.cxx +[ 5%] Building C object Utilities/mxml/CMakeFiles/cmtkMxml.dir/mxml-file.c.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/mxml && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkMxml_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/mxml -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/mxml/CMakeFiles/cmtkMxml.dir/mxml-file.c.o -MF CMakeFiles/cmtkMxml.dir/mxml-file.c.o.d -o CMakeFiles/cmtkMxml.dir/mxml-file.c.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/mxml/mxml-file.c -[ 4%] Building C object Utilities/mxml/CMakeFiles/cmtkMxml.dir/mxml-node.c.o +[ 5%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/parseAir.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/parseAir.o -MF CMakeFiles/NrrdIO.dir/parseAir.o.d -o CMakeFiles/NrrdIO.dir/parseAir.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/parseAir.c +[ 5%] Building C object Utilities/mxml/CMakeFiles/cmtkMxml.dir/mxml-node.c.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/mxml && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkMxml_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/mxml -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/mxml/CMakeFiles/cmtkMxml.dir/mxml-node.c.o -MF CMakeFiles/cmtkMxml.dir/mxml-node.c.o.d -o CMakeFiles/cmtkMxml.dir/mxml-node.c.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/mxml/mxml-node.c -[ 4%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/format.o -[ 4%] Building C object Utilities/mxml/CMakeFiles/cmtkMxml.dir/mxml-search.c.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/format.o -MF CMakeFiles/NrrdIO.dir/format.o.d -o CMakeFiles/NrrdIO.dir/format.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/format.c +[ 5%] Building C object Utilities/mxml/CMakeFiles/cmtkMxml.dir/mxml-search.c.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/mxml && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkMxml_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/mxml -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/mxml/CMakeFiles/cmtkMxml.dir/mxml-search.c.o -MF CMakeFiles/cmtkMxml.dir/mxml-search.c.o.d -o CMakeFiles/cmtkMxml.dir/mxml-search.c.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/mxml/mxml-search.c -[ 4%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/parseNrrd.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/parseNrrd.o -MF CMakeFiles/NrrdIO.dir/parseNrrd.o.d -o CMakeFiles/NrrdIO.dir/parseNrrd.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/parseNrrd.c -[ 4%] Building C object Utilities/mxml/CMakeFiles/cmtkMxml.dir/mxml-string.c.o +[ 5%] Building C object Utilities/mxml/CMakeFiles/cmtkMxml.dir/mxml-string.c.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/mxml && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkMxml_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/mxml -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/mxml/CMakeFiles/cmtkMxml.dir/mxml-string.c.o -MF CMakeFiles/cmtkMxml.dir/mxml-string.c.o.d -o CMakeFiles/cmtkMxml.dir/mxml-string.c.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/mxml/mxml-string.c -[ 5%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/formatEPS.o +[ 5%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/dio.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/dio.o -MF CMakeFiles/NrrdIO.dir/dio.o.d -o CMakeFiles/NrrdIO.dir/dio.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/dio.c +[ 5%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/format.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/format.o -MF CMakeFiles/NrrdIO.dir/format.o.d -o CMakeFiles/NrrdIO.dir/format.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/format.c +[ 5%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/parseNrrd.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/parseNrrd.o -MF CMakeFiles/NrrdIO.dir/parseNrrd.o.d -o CMakeFiles/NrrdIO.dir/parseNrrd.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/parseNrrd.c +[ 6%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/formatEPS.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/formatEPS.o -MF CMakeFiles/NrrdIO.dir/formatEPS.o.d -o CMakeFiles/NrrdIO.dir/formatEPS.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/formatEPS.c -[ 5%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/encoding.o +[ 6%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/encoding.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/encoding.o -MF CMakeFiles/NrrdIO.dir/encoding.o.d -o CMakeFiles/NrrdIO.dir/encoding.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/encoding.c -[ 5%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/formatNRRD.o +[ 6%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/formatNRRD.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/formatNRRD.o -MF CMakeFiles/NrrdIO.dir/formatNRRD.o.d -o CMakeFiles/NrrdIO.dir/formatNRRD.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/formatNRRD.c -[ 5%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/encodingAscii.o +[ 6%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/gammaf.cxx.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Numerics/CMakeFiles/cmtkNumerics.dir/gammaf.cxx.o -MF CMakeFiles/cmtkNumerics.dir/gammaf.cxx.o.d -o CMakeFiles/cmtkNumerics.dir/gammaf.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Numerics/gammaf.cxx +[ 6%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/encodingAscii.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/encodingAscii.o -MF CMakeFiles/NrrdIO.dir/encodingAscii.o.d -o CMakeFiles/NrrdIO.dir/encodingAscii.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/encodingAscii.c -[ 5%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/blas.cxx.o -[ 5%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/formatPNG.o +[ 6%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/formatPNG.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/formatPNG.o -MF CMakeFiles/NrrdIO.dir/formatPNG.o.d -o CMakeFiles/NrrdIO.dir/formatPNG.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/formatPNG.c -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Numerics/CMakeFiles/cmtkNumerics.dir/blas.cxx.o -MF CMakeFiles/cmtkNumerics.dir/blas.cxx.o.d -o CMakeFiles/cmtkNumerics.dir/blas.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Numerics/blas.cxx -[ 5%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/cholesky.cxx.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Numerics/CMakeFiles/cmtkNumerics.dir/cholesky.cxx.o -MF CMakeFiles/cmtkNumerics.dir/cholesky.cxx.o.d -o CMakeFiles/cmtkNumerics.dir/cholesky.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Numerics/cholesky.cxx -[ 6%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/encodingBzip2.o +[ 7%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/encodingBzip2.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/encodingBzip2.o -MF CMakeFiles/NrrdIO.dir/encodingBzip2.o.d -o CMakeFiles/NrrdIO.dir/encodingBzip2.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/encodingBzip2.c -[ 6%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/formatPNM.o +[ 7%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/formatPNM.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/formatPNM.o -MF CMakeFiles/NrrdIO.dir/formatPNM.o.d -o CMakeFiles/NrrdIO.dir/formatPNM.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/formatPNM.c -[ 6%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/accessors.o +[ 7%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/accessors.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/accessors.o -MF CMakeFiles/NrrdIO.dir/accessors.o.d -o CMakeFiles/NrrdIO.dir/accessors.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/accessors.c -[ 6%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/encodingGzip.o -[ 7%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/det.cxx.o +[ 7%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/encodingGzip.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/encodingGzip.o -MF CMakeFiles/NrrdIO.dir/encodingGzip.o.d -o CMakeFiles/NrrdIO.dir/encodingGzip.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/encodingGzip.c -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Numerics/CMakeFiles/cmtkNumerics.dir/det.cxx.o -MF CMakeFiles/cmtkNumerics.dir/det.cxx.o.d -o CMakeFiles/cmtkNumerics.dir/det.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Numerics/det.cxx +[ 7%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/hessenberg.cxx.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Numerics/CMakeFiles/cmtkNumerics.dir/hessenberg.cxx.o -MF CMakeFiles/cmtkNumerics.dir/hessenberg.cxx.o.d -o CMakeFiles/cmtkNumerics.dir/hessenberg.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Numerics/hessenberg.cxx [ 7%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/formatText.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/formatText.o -MF CMakeFiles/NrrdIO.dir/formatText.o.d -o CMakeFiles/NrrdIO.dir/formatText.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/formatText.c +[ 7%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/hsschur.cxx.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Numerics/CMakeFiles/cmtkNumerics.dir/hsschur.cxx.o -MF CMakeFiles/cmtkNumerics.dir/hsschur.cxx.o.d -o CMakeFiles/cmtkNumerics.dir/hsschur.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Numerics/hsschur.cxx [ 8%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/array.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/array.o -MF CMakeFiles/NrrdIO.dir/array.o.d -o CMakeFiles/NrrdIO.dir/array.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/array.c [ 8%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/encodingHex.o @@ -1349,108 +1398,102 @@ cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/formatVTK.o -MF CMakeFiles/NrrdIO.dir/formatVTK.o.d -o CMakeFiles/NrrdIO.dir/formatVTK.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/formatVTK.c [ 8%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/read.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/read.o -MF CMakeFiles/NrrdIO.dir/read.o.d -o CMakeFiles/NrrdIO.dir/read.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/read.c -[ 8%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/arraysNrrd.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/arraysNrrd.o -MF CMakeFiles/NrrdIO.dir/arraysNrrd.o.d -o CMakeFiles/NrrdIO.dir/arraysNrrd.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/arraysNrrd.c -[ 9%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/encodingRaw.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/encodingRaw.o -MF CMakeFiles/NrrdIO.dir/encodingRaw.o.d -o CMakeFiles/NrrdIO.dir/encodingRaw.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/encodingRaw.c -[ 9%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/gzio.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/gzio.o -MF CMakeFiles/NrrdIO.dir/gzio.o.d -o CMakeFiles/NrrdIO.dir/gzio.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/gzio.c -[ 9%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/reorder.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/reorder.o -MF CMakeFiles/NrrdIO.dir/reorder.o.d -o CMakeFiles/NrrdIO.dir/reorder.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/reorder.c -[ 9%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/write.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/write.o -MF CMakeFiles/NrrdIO.dir/write.o.d -o CMakeFiles/NrrdIO.dir/write.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/write.c -[ 9%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/axis.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/axis.o -MF CMakeFiles/NrrdIO.dir/axis.o.d -o CMakeFiles/NrrdIO.dir/axis.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/axis.c -[ 10%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/endianAir.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/endianAir.o -MF CMakeFiles/NrrdIO.dir/endianAir.o.d -o CMakeFiles/NrrdIO.dir/endianAir.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/endianAir.c -[ 10%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/keyvalue.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/keyvalue.o -MF CMakeFiles/NrrdIO.dir/keyvalue.o.d -o CMakeFiles/NrrdIO.dir/keyvalue.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/keyvalue.c -[ 10%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/biffbiff.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/biffbiff.o -MF CMakeFiles/NrrdIO.dir/biffbiff.o.d -o CMakeFiles/NrrdIO.dir/biffbiff.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/biffbiff.c -[ 10%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/biffmsg.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/biffmsg.o -MF CMakeFiles/NrrdIO.dir/biffmsg.o.d -o CMakeFiles/NrrdIO.dir/biffmsg.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/biffmsg.c -[ 10%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/endianNrrd.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/endianNrrd.o -MF CMakeFiles/NrrdIO.dir/endianNrrd.o.d -o CMakeFiles/NrrdIO.dir/endianNrrd.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/endianNrrd.c -[ 11%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/methodsNrrd.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/methodsNrrd.o -MF CMakeFiles/NrrdIO.dir/methodsNrrd.o.d -o CMakeFiles/NrrdIO.dir/methodsNrrd.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/methodsNrrd.c -[ 11%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/sane.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/sane.o -MF CMakeFiles/NrrdIO.dir/sane.o.d -o CMakeFiles/NrrdIO.dir/sane.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/sane.c -[ 11%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/enum.o -[ 11%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/miscAir.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/enum.o -MF CMakeFiles/NrrdIO.dir/enum.o.d -o CMakeFiles/NrrdIO.dir/enum.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/enum.c -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/miscAir.o -MF CMakeFiles/NrrdIO.dir/miscAir.o.d -o CMakeFiles/NrrdIO.dir/miscAir.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/miscAir.c -[ 11%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/gammaf.cxx.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Numerics/CMakeFiles/cmtkNumerics.dir/gammaf.cxx.o -MF CMakeFiles/cmtkNumerics.dir/gammaf.cxx.o.d -o CMakeFiles/cmtkNumerics.dir/gammaf.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Numerics/gammaf.cxx -[ 11%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/simple.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/simple.o -MF CMakeFiles/NrrdIO.dir/simple.o.d -o CMakeFiles/NrrdIO.dir/simple.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/simple.c -[ 11%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/hessenberg.cxx.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Numerics/CMakeFiles/cmtkNumerics.dir/hessenberg.cxx.o -MF CMakeFiles/cmtkNumerics.dir/hessenberg.cxx.o.d -o CMakeFiles/cmtkNumerics.dir/hessenberg.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Numerics/hessenberg.cxx -[ 11%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/hsschur.cxx.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Numerics/CMakeFiles/cmtkNumerics.dir/hsschur.cxx.o -MF CMakeFiles/cmtkNumerics.dir/hsschur.cxx.o.d -o CMakeFiles/cmtkNumerics.dir/hsschur.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Numerics/hsschur.cxx -[ 11%] Linking C shared library ../../bin/libcmtkMxml.so +[ 8%] Linking C shared library ../../bin/libcmtkMxml.so cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/mxml && /usr/bin/cmake -E cmake_link_script CMakeFiles/cmtkMxml.dir/link.txt --verbose=1 -/usr/bin/cc -fPIC -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -shared -Wl,-soname,libcmtkMxml.so -o ../../bin/libcmtkMxml.so "CMakeFiles/cmtkMxml.dir/mxml-attr.c.o" "CMakeFiles/cmtkMxml.dir/mxml-entity.c.o" "CMakeFiles/cmtkMxml.dir/mxml-index.c.o" "CMakeFiles/cmtkMxml.dir/mxml-private.c.o" "CMakeFiles/cmtkMxml.dir/mxml-get.c.o" "CMakeFiles/cmtkMxml.dir/mxml-set.c.o" "CMakeFiles/cmtkMxml.dir/mxml-file.c.o" "CMakeFiles/cmtkMxml.dir/mxml-node.c.o" "CMakeFiles/cmtkMxml.dir/mxml-search.c.o" "CMakeFiles/cmtkMxml.dir/mxml-string.c.o" -[ 11%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/ibetaf.cxx.o +[ 8%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/ibetaf.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Numerics/CMakeFiles/cmtkNumerics.dir/ibetaf.cxx.o -MF CMakeFiles/cmtkNumerics.dir/ibetaf.cxx.o.d -o CMakeFiles/cmtkNumerics.dir/ibetaf.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Numerics/ibetaf.cxx -[ 12%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/lbfgsb.cxx.o +/usr/bin/cc -fPIC -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -shared -Wl,-soname,libcmtkMxml.so -o ../../bin/libcmtkMxml.so "CMakeFiles/cmtkMxml.dir/mxml-attr.c.o" "CMakeFiles/cmtkMxml.dir/mxml-entity.c.o" "CMakeFiles/cmtkMxml.dir/mxml-index.c.o" "CMakeFiles/cmtkMxml.dir/mxml-private.c.o" "CMakeFiles/cmtkMxml.dir/mxml-get.c.o" "CMakeFiles/cmtkMxml.dir/mxml-set.c.o" "CMakeFiles/cmtkMxml.dir/mxml-file.c.o" "CMakeFiles/cmtkMxml.dir/mxml-node.c.o" "CMakeFiles/cmtkMxml.dir/mxml-search.c.o" "CMakeFiles/cmtkMxml.dir/mxml-string.c.o" +[ 9%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/lbfgsb.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Numerics/CMakeFiles/cmtkNumerics.dir/lbfgsb.cxx.o -MF CMakeFiles/cmtkNumerics.dir/lbfgsb.cxx.o.d -o CMakeFiles/cmtkNumerics.dir/lbfgsb.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Numerics/lbfgsb.cxx +[ 9%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/arraysNrrd.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/arraysNrrd.o -MF CMakeFiles/NrrdIO.dir/arraysNrrd.o.d -o CMakeFiles/NrrdIO.dir/arraysNrrd.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/arraysNrrd.c make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[ 12%] Built target cmtkMxml +[ 10%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/encodingRaw.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/encodingRaw.o -MF CMakeFiles/NrrdIO.dir/encodingRaw.o.d -o CMakeFiles/NrrdIO.dir/encodingRaw.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/encodingRaw.c +[ 10%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/lq.cxx.o +[ 10%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/gzio.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Numerics/CMakeFiles/cmtkNumerics.dir/lq.cxx.o -MF CMakeFiles/cmtkNumerics.dir/lq.cxx.o.d -o CMakeFiles/cmtkNumerics.dir/lq.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Numerics/lq.cxx +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/gzio.o -MF CMakeFiles/NrrdIO.dir/gzio.o.d -o CMakeFiles/NrrdIO.dir/gzio.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/gzio.c +[ 10%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/lu.cxx.o +[ 10%] Built target cmtkMxml +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Numerics/CMakeFiles/cmtkNumerics.dir/lu.cxx.o -MF CMakeFiles/cmtkNumerics.dir/lu.cxx.o.d -o CMakeFiles/cmtkNumerics.dir/lu.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Numerics/lu.cxx make -f libs/System/CMakeFiles/cmtkSystem.dir/build.make libs/System/CMakeFiles/cmtkSystem.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/libs/System /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/System /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/System/CMakeFiles/cmtkSystem.dir/DependInfo.cmake --color= -[ 12%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/lq.cxx.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Numerics/CMakeFiles/cmtkNumerics.dir/lq.cxx.o -MF CMakeFiles/cmtkNumerics.dir/lq.cxx.o.d -o CMakeFiles/cmtkNumerics.dir/lq.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Numerics/lq.cxx make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f libs/System/CMakeFiles/cmtkSystem.dir/build.make libs/System/CMakeFiles/cmtkSystem.dir/build -[ 12%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/lu.cxx.o make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Numerics/CMakeFiles/cmtkNumerics.dir/lu.cxx.o -MF CMakeFiles/cmtkNumerics.dir/lu.cxx.o.d -o CMakeFiles/cmtkNumerics.dir/lu.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Numerics/lu.cxx -[ 12%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkCommandLine.cxx.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/System/CMakeFiles/cmtkSystem.dir/cmtkCommandLine.cxx.o -MF CMakeFiles/cmtkSystem.dir/cmtkCommandLine.cxx.o.d -o CMakeFiles/cmtkSystem.dir/cmtkCommandLine.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/System/cmtkCommandLine.cxx -[ 12%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkCommandLineCallback.cxx.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/System/CMakeFiles/cmtkSystem.dir/cmtkCommandLineCallback.cxx.o -MF CMakeFiles/cmtkSystem.dir/cmtkCommandLineCallback.cxx.o.d -o CMakeFiles/cmtkSystem.dir/cmtkCommandLineCallback.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/System/cmtkCommandLineCallback.cxx -[ 12%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/normaldistr.cxx.o +[ 10%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkCommandLine.cxx.o +[ 10%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/normaldistr.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Numerics/CMakeFiles/cmtkNumerics.dir/normaldistr.cxx.o -MF CMakeFiles/cmtkNumerics.dir/normaldistr.cxx.o.d -o CMakeFiles/cmtkNumerics.dir/normaldistr.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Numerics/normaldistr.cxx -[ 12%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/nsevd.cxx.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/System/CMakeFiles/cmtkSystem.dir/cmtkCommandLine.cxx.o -MF CMakeFiles/cmtkSystem.dir/cmtkCommandLine.cxx.o.d -o CMakeFiles/cmtkSystem.dir/cmtkCommandLine.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/System/cmtkCommandLine.cxx +[ 10%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/reorder.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/reorder.o -MF CMakeFiles/NrrdIO.dir/reorder.o.d -o CMakeFiles/NrrdIO.dir/reorder.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/reorder.c +[ 10%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/write.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/write.o -MF CMakeFiles/NrrdIO.dir/write.o.d -o CMakeFiles/NrrdIO.dir/write.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/write.c +[ 10%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/axis.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/axis.o -MF CMakeFiles/NrrdIO.dir/axis.o.d -o CMakeFiles/NrrdIO.dir/axis.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/axis.c +[ 11%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/endianAir.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/endianAir.o -MF CMakeFiles/NrrdIO.dir/endianAir.o.d -o CMakeFiles/NrrdIO.dir/endianAir.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/endianAir.c +[ 11%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/nsevd.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Numerics/CMakeFiles/cmtkNumerics.dir/nsevd.cxx.o -MF CMakeFiles/cmtkNumerics.dir/nsevd.cxx.o.d -o CMakeFiles/cmtkNumerics.dir/nsevd.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Numerics/nsevd.cxx -[ 13%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/qr.cxx.o +[ 11%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/keyvalue.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/keyvalue.o -MF CMakeFiles/NrrdIO.dir/keyvalue.o.d -o CMakeFiles/NrrdIO.dir/keyvalue.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/keyvalue.c +[ 11%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/biffbiff.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/biffbiff.o -MF CMakeFiles/NrrdIO.dir/biffbiff.o.d -o CMakeFiles/NrrdIO.dir/biffbiff.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/biffbiff.c +[ 11%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/biffmsg.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/biffmsg.o -MF CMakeFiles/NrrdIO.dir/biffmsg.o.d -o CMakeFiles/NrrdIO.dir/biffmsg.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/biffmsg.c +[ 12%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/qr.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Numerics/CMakeFiles/cmtkNumerics.dir/qr.cxx.o -MF CMakeFiles/cmtkNumerics.dir/qr.cxx.o.d -o CMakeFiles/cmtkNumerics.dir/qr.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Numerics/qr.cxx -[ 13%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/reflections.cxx.o +[ 12%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/reflections.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Numerics/CMakeFiles/cmtkNumerics.dir/reflections.cxx.o -MF CMakeFiles/cmtkNumerics.dir/reflections.cxx.o.d -o CMakeFiles/cmtkNumerics.dir/reflections.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Numerics/reflections.cxx +[ 12%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/endianNrrd.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/endianNrrd.o -MF CMakeFiles/NrrdIO.dir/endianNrrd.o.d -o CMakeFiles/NrrdIO.dir/endianNrrd.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/endianNrrd.c +[ 13%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/methodsNrrd.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/methodsNrrd.o -MF CMakeFiles/NrrdIO.dir/methodsNrrd.o.d -o CMakeFiles/NrrdIO.dir/methodsNrrd.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/methodsNrrd.c [ 13%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/rotations.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Numerics/CMakeFiles/cmtkNumerics.dir/rotations.cxx.o -MF CMakeFiles/cmtkNumerics.dir/rotations.cxx.o.d -o CMakeFiles/cmtkNumerics.dir/rotations.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Numerics/rotations.cxx -[ 14%] Linking C shared library ../../bin/libNrrdIO.so -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cmake -E cmake_link_script CMakeFiles/NrrdIO.dir/link.txt --verbose=1 -[ 14%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/sblas.cxx.o +[ 13%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/sane.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/sane.o -MF CMakeFiles/NrrdIO.dir/sane.o.d -o CMakeFiles/NrrdIO.dir/sane.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/sane.c +[ 13%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/sblas.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Numerics/CMakeFiles/cmtkNumerics.dir/sblas.cxx.o -MF CMakeFiles/cmtkNumerics.dir/sblas.cxx.o.d -o CMakeFiles/cmtkNumerics.dir/sblas.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Numerics/sblas.cxx -/usr/bin/cc -fPIC -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -shared -Wl,-soname,libNrrdIO.so -o ../../bin/libNrrdIO.so CMakeFiles/NrrdIO.dir/comment.o CMakeFiles/NrrdIO.dir/enumsNrrd.o CMakeFiles/NrrdIO.dir/mop.o CMakeFiles/NrrdIO.dir/string.o CMakeFiles/NrrdIO.dir/754.o CMakeFiles/NrrdIO.dir/defaultsNrrd.o CMakeFiles/NrrdIO.dir/parseAir.o CMakeFiles/NrrdIO.dir/dio.o CMakeFiles/NrrdIO.dir/format.o CMakeFiles/NrrdIO.dir/parseNrrd.o CMakeFiles/NrrdIO.dir/formatEPS.o CMakeFiles/NrrdIO.dir/encoding.o CMakeFiles/NrrdIO.dir/formatNRRD.o CMakeFiles/NrrdIO.dir/encodingAscii.o CMakeFiles/NrrdIO.dir/formatPNG.o CMakeFiles/NrrdIO.dir/encodingBzip2.o CMakeFiles/NrrdIO.dir/formatPNM.o CMakeFiles/NrrdIO.dir/accessors.o CMakeFiles/NrrdIO.dir/encodingGzip.o CMakeFiles/NrrdIO.dir/formatText.o CMakeFiles/NrrdIO.dir/array.o CMakeFiles/NrrdIO.dir/encodingHex.o CMakeFiles/NrrdIO.dir/formatVTK.o CMakeFiles/NrrdIO.dir/read.o CMakeFiles/NrrdIO.dir/arraysNrrd.o CMakeFiles/NrrdIO.dir/encodingRaw.o CMakeFiles/NrrdIO.dir/gzio.o CMakeFiles/NrrdIO.dir/reorder.o CMakeFiles/NrrdIO.dir/write.o CMakeFiles/NrrdIO.dir/axis.o CMakeFiles/NrrdIO.dir/endianAir.o CMakeFiles/NrrdIO.dir/keyvalue.o CMakeFiles/NrrdIO.dir/biffbiff.o CMakeFiles/NrrdIO.dir/biffmsg.o CMakeFiles/NrrdIO.dir/endianNrrd.o CMakeFiles/NrrdIO.dir/methodsNrrd.o CMakeFiles/NrrdIO.dir/sane.o CMakeFiles/NrrdIO.dir/enum.o CMakeFiles/NrrdIO.dir/miscAir.o CMakeFiles/NrrdIO.dir/simple.o -lz -make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[ 14%] Built target NrrdIO -[ 15%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkCommandLineItem.cxx.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/System/CMakeFiles/cmtkSystem.dir/cmtkCommandLineItem.cxx.o -MF CMakeFiles/cmtkSystem.dir/cmtkCommandLineItem.cxx.o.d -o CMakeFiles/cmtkSystem.dir/cmtkCommandLineItem.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/System/cmtkCommandLineItem.cxx -[ 15%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/sevd.cxx.o +[ 13%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/enum.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/enum.o -MF CMakeFiles/NrrdIO.dir/enum.o.d -o CMakeFiles/NrrdIO.dir/enum.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/enum.c +[ 13%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/miscAir.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/miscAir.o -MF CMakeFiles/NrrdIO.dir/miscAir.o.d -o CMakeFiles/NrrdIO.dir/miscAir.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/miscAir.c +[ 13%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/sevd.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Numerics/CMakeFiles/cmtkNumerics.dir/sevd.cxx.o -MF CMakeFiles/cmtkNumerics.dir/sevd.cxx.o.d -o CMakeFiles/cmtkNumerics.dir/sevd.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Numerics/sevd.cxx -[ 15%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/spddet.cxx.o +[ 13%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/simple.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/simple.o -MF CMakeFiles/NrrdIO.dir/simple.o.d -o CMakeFiles/NrrdIO.dir/simple.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/simple.c +[ 13%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/spddet.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Numerics/CMakeFiles/cmtkNumerics.dir/spddet.cxx.o -MF CMakeFiles/cmtkNumerics.dir/spddet.cxx.o.d -o CMakeFiles/cmtkNumerics.dir/spddet.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Numerics/spddet.cxx -[ 16%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/studenttdistr.cxx.o +[ 14%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/studenttdistr.cxx.o +[ 14%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkCommandLineCallback.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Numerics/CMakeFiles/cmtkNumerics.dir/studenttdistr.cxx.o -MF CMakeFiles/cmtkNumerics.dir/studenttdistr.cxx.o.d -o CMakeFiles/cmtkNumerics.dir/studenttdistr.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Numerics/studenttdistr.cxx -[ 16%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/studentttests.cxx.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/System/CMakeFiles/cmtkSystem.dir/cmtkCommandLineCallback.cxx.o -MF CMakeFiles/cmtkSystem.dir/cmtkCommandLineCallback.cxx.o.d -o CMakeFiles/cmtkSystem.dir/cmtkCommandLineCallback.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/System/cmtkCommandLineCallback.cxx +[ 14%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/studentttests.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Numerics/CMakeFiles/cmtkNumerics.dir/studentttests.cxx.o -MF CMakeFiles/cmtkNumerics.dir/studentttests.cxx.o.d -o CMakeFiles/cmtkNumerics.dir/studentttests.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Numerics/studentttests.cxx -[ 16%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/svd.cxx.o +[ 14%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/svd.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Numerics/CMakeFiles/cmtkNumerics.dir/svd.cxx.o -MF CMakeFiles/cmtkNumerics.dir/svd.cxx.o.d -o CMakeFiles/cmtkNumerics.dir/svd.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Numerics/svd.cxx -[ 16%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/tdevd.cxx.o +[ 14%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/tdevd.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Numerics/CMakeFiles/cmtkNumerics.dir/tdevd.cxx.o -MF CMakeFiles/cmtkNumerics.dir/tdevd.cxx.o.d -o CMakeFiles/cmtkNumerics.dir/tdevd.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Numerics/tdevd.cxx -[ 16%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/tridiagonal.cxx.o +[ 14%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/tridiagonal.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Numerics/CMakeFiles/cmtkNumerics.dir/tridiagonal.cxx.o -MF CMakeFiles/cmtkNumerics.dir/tridiagonal.cxx.o.d -o CMakeFiles/cmtkNumerics.dir/tridiagonal.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Numerics/tridiagonal.cxx -[ 17%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/mersenne.cxx.o +[ 15%] Linking C shared library ../../bin/libNrrdIO.so +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cmake -E cmake_link_script CMakeFiles/NrrdIO.dir/link.txt --verbose=1 +[ 16%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/mersenne.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Numerics/CMakeFiles/cmtkNumerics.dir/mersenne.cxx.o -MF CMakeFiles/cmtkNumerics.dir/mersenne.cxx.o.d -o CMakeFiles/cmtkNumerics.dir/mersenne.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Numerics/mersenne.cxx +/usr/bin/cc -fPIC -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -shared -Wl,-soname,libNrrdIO.so -o ../../bin/libNrrdIO.so CMakeFiles/NrrdIO.dir/comment.o CMakeFiles/NrrdIO.dir/enumsNrrd.o CMakeFiles/NrrdIO.dir/mop.o CMakeFiles/NrrdIO.dir/string.o CMakeFiles/NrrdIO.dir/754.o CMakeFiles/NrrdIO.dir/defaultsNrrd.o CMakeFiles/NrrdIO.dir/parseAir.o CMakeFiles/NrrdIO.dir/dio.o CMakeFiles/NrrdIO.dir/format.o CMakeFiles/NrrdIO.dir/parseNrrd.o CMakeFiles/NrrdIO.dir/formatEPS.o CMakeFiles/NrrdIO.dir/encoding.o CMakeFiles/NrrdIO.dir/formatNRRD.o CMakeFiles/NrrdIO.dir/encodingAscii.o CMakeFiles/NrrdIO.dir/formatPNG.o CMakeFiles/NrrdIO.dir/encodingBzip2.o CMakeFiles/NrrdIO.dir/formatPNM.o CMakeFiles/NrrdIO.dir/accessors.o CMakeFiles/NrrdIO.dir/encodingGzip.o CMakeFiles/NrrdIO.dir/formatText.o CMakeFiles/NrrdIO.dir/array.o CMakeFiles/NrrdIO.dir/encodingHex.o CMakeFiles/NrrdIO.dir/formatVTK.o CMakeFiles/NrrdIO.dir/read.o CMakeFiles/NrrdIO.dir/arraysNrrd.o CMakeFiles/NrrdIO.dir/encodingRaw.o CMakeFiles/NrrdIO.dir/gzio.o CMakeFiles/NrrdIO.dir/reorder.o CMakeFiles/NrrdIO.dir/write.o CMakeFiles/NrrdIO.dir/axis.o CMakeFiles/NrrdIO.dir/endianAir.o CMakeFiles/NrrdIO.dir/keyvalue.o CMakeFiles/NrrdIO.dir/biffbiff.o CMakeFiles/NrrdIO.dir/biffmsg.o CMakeFiles/NrrdIO.dir/endianNrrd.o CMakeFiles/NrrdIO.dir/methodsNrrd.o CMakeFiles/NrrdIO.dir/sane.o CMakeFiles/NrrdIO.dir/enum.o CMakeFiles/NrrdIO.dir/miscAir.o CMakeFiles/NrrdIO.dir/simple.o -lz +[ 17%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkCommandLineItem.cxx.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/System/CMakeFiles/cmtkSystem.dir/cmtkCommandLineItem.cxx.o -MF CMakeFiles/cmtkSystem.dir/cmtkCommandLineItem.cxx.o.d -o CMakeFiles/cmtkSystem.dir/cmtkCommandLineItem.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/System/cmtkCommandLineItem.cxx [ 17%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkCommandLineKeyToAction.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/System/CMakeFiles/cmtkSystem.dir/cmtkCommandLineKeyToAction.cxx.o -MF CMakeFiles/cmtkSystem.dir/cmtkCommandLineKeyToAction.cxx.o.d -o CMakeFiles/cmtkSystem.dir/cmtkCommandLineKeyToAction.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/System/cmtkCommandLineKeyToAction.cxx [ 17%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkCommandLineKeyToActionEnum.cxx.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/System/CMakeFiles/cmtkSystem.dir/cmtkCommandLineKeyToActionEnum.cxx.o -MF CMakeFiles/cmtkSystem.dir/cmtkCommandLineKeyToActionEnum.cxx.o.d -o CMakeFiles/cmtkSystem.dir/cmtkCommandLineKeyToActionEnum.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/System/cmtkCommandLineKeyToActionEnum.cxx [ 17%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkCommandLineKeyToActionSingle.cxx.o +make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/System/CMakeFiles/cmtkSystem.dir/cmtkCommandLineKeyToActionSingle.cxx.o -MF CMakeFiles/cmtkSystem.dir/cmtkCommandLineKeyToActionSingle.cxx.o.d -o CMakeFiles/cmtkSystem.dir/cmtkCommandLineKeyToActionSingle.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/System/cmtkCommandLineKeyToActionSingle.cxx -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/System/CMakeFiles/cmtkSystem.dir/cmtkCommandLineKeyToActionEnum.cxx.o -MF CMakeFiles/cmtkSystem.dir/cmtkCommandLineKeyToActionEnum.cxx.o.d -o CMakeFiles/cmtkSystem.dir/cmtkCommandLineKeyToActionEnum.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/System/cmtkCommandLineKeyToActionEnum.cxx +[ 17%] Built target NrrdIO [ 17%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkCommandLineNonOptionParameter.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/System/CMakeFiles/cmtkSystem.dir/cmtkCommandLineNonOptionParameter.cxx.o -MF CMakeFiles/cmtkSystem.dir/cmtkCommandLineNonOptionParameter.cxx.o.d -o CMakeFiles/cmtkSystem.dir/cmtkCommandLineNonOptionParameter.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/System/cmtkCommandLineNonOptionParameter.cxx [ 18%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkCommandLineNonOptionParameterVector.cxx.o @@ -1459,11 +1502,11 @@ cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/System/CMakeFiles/cmtkSystem.dir/cmtkCommandLineHelp.cxx.o -MF CMakeFiles/cmtkSystem.dir/cmtkCommandLineHelp.cxx.o.d -o CMakeFiles/cmtkSystem.dir/cmtkCommandLineHelp.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/System/cmtkCommandLineHelp.cxx [ 18%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkCommandLineMan.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/System/CMakeFiles/cmtkSystem.dir/cmtkCommandLineMan.cxx.o -MF CMakeFiles/cmtkSystem.dir/cmtkCommandLineMan.cxx.o.d -o CMakeFiles/cmtkSystem.dir/cmtkCommandLineMan.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/System/cmtkCommandLineMan.cxx +[ 18%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkCommandLineXML.cxx.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/System/CMakeFiles/cmtkSystem.dir/cmtkCommandLineXML.cxx.o -MF CMakeFiles/cmtkSystem.dir/cmtkCommandLineXML.cxx.o.d -o CMakeFiles/cmtkSystem.dir/cmtkCommandLineXML.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/System/cmtkCommandLineXML.cxx /build/cmtk-3.3.1p2+dfsg/libs/System/cmtkCommandLineMan.cxx:61:45: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 61 | StdOut << ".TH " << cmd << " \"1\" \"" << __DATE__ << "\" \"CMTK " << ppit->second << "\" \"The Computational Morphometry Toolkit\"\n"; | ^~~~~~~~ -[ 18%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkCommandLineXML.cxx.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/System/CMakeFiles/cmtkSystem.dir/cmtkCommandLineXML.cxx.o -MF CMakeFiles/cmtkSystem.dir/cmtkCommandLineXML.cxx.o.d -o CMakeFiles/cmtkSystem.dir/cmtkCommandLineXML.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/System/cmtkCommandLineXML.cxx [ 18%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkCommandLineWiki.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/System/CMakeFiles/cmtkSystem.dir/cmtkCommandLineWiki.cxx.o -MF CMakeFiles/cmtkSystem.dir/cmtkCommandLineWiki.cxx.o.d -o CMakeFiles/cmtkSystem.dir/cmtkCommandLineWiki.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/System/cmtkCommandLineWiki.cxx [ 19%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkCompressedStream.cxx.o @@ -1489,9 +1532,9 @@ [ 20%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkProgressConsole.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/System/CMakeFiles/cmtkSystem.dir/cmtkProgressConsole.cxx.o -MF CMakeFiles/cmtkSystem.dir/cmtkProgressConsole.cxx.o.d -o CMakeFiles/cmtkSystem.dir/cmtkProgressConsole.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/System/cmtkProgressConsole.cxx [ 21%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkRegressionTracker.cxx.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/System/CMakeFiles/cmtkSystem.dir/cmtkRegressionTracker.cxx.o -MF CMakeFiles/cmtkSystem.dir/cmtkRegressionTracker.cxx.o.d -o CMakeFiles/cmtkSystem.dir/cmtkRegressionTracker.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/System/cmtkRegressionTracker.cxx [ 21%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkStackBacktrace.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/System/CMakeFiles/cmtkSystem.dir/cmtkStackBacktrace.cxx.o -MF CMakeFiles/cmtkSystem.dir/cmtkStackBacktrace.cxx.o.d -o CMakeFiles/cmtkSystem.dir/cmtkStackBacktrace.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/System/cmtkStackBacktrace.cxx +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/System/CMakeFiles/cmtkSystem.dir/cmtkRegressionTracker.cxx.o -MF CMakeFiles/cmtkSystem.dir/cmtkRegressionTracker.cxx.o.d -o CMakeFiles/cmtkSystem.dir/cmtkRegressionTracker.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/System/cmtkRegressionTracker.cxx [ 21%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkStrUtility.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/System/CMakeFiles/cmtkSystem.dir/cmtkStrUtility.cxx.o -MF CMakeFiles/cmtkSystem.dir/cmtkStrUtility.cxx.o.d -o CMakeFiles/cmtkSystem.dir/cmtkStrUtility.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/System/cmtkStrUtility.cxx [ 21%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkThreads.cxx.o @@ -1508,16 +1551,16 @@ /build/cmtk-3.3.1p2+dfsg/libs/System/cmtkFileUtils.cxx:147:11: warning: ignoring return value of 'char* getcwd(char*, size_t)' declared with attribute 'warn_unused_result' [-Wunused-result] 147 | getcwd( absPath, PATH_MAX ); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~ -[ 22%] Linking CXX shared library ../../bin/libcmtkSystem.so -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/cmake -E cmake_link_script CMakeFiles/cmtkSystem.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -shared -Wl,-soname,libcmtkSystem.so -o ../../bin/libcmtkSystem.so CMakeFiles/cmtkSystem.dir/cmtkCommandLine.cxx.o CMakeFiles/cmtkSystem.dir/cmtkCommandLineCallback.cxx.o CMakeFiles/cmtkSystem.dir/cmtkCommandLineItem.cxx.o CMakeFiles/cmtkSystem.dir/cmtkCommandLineKeyToAction.cxx.o CMakeFiles/cmtkSystem.dir/cmtkCommandLineKeyToActionEnum.cxx.o CMakeFiles/cmtkSystem.dir/cmtkCommandLineKeyToActionSingle.cxx.o CMakeFiles/cmtkSystem.dir/cmtkCommandLineNonOptionParameter.cxx.o CMakeFiles/cmtkSystem.dir/cmtkCommandLineNonOptionParameterVector.cxx.o CMakeFiles/cmtkSystem.dir/cmtkCommandLineHelp.cxx.o CMakeFiles/cmtkSystem.dir/cmtkCommandLineMan.cxx.o CMakeFiles/cmtkSystem.dir/cmtkCommandLineXML.cxx.o CMakeFiles/cmtkSystem.dir/cmtkCommandLineWiki.cxx.o CMakeFiles/cmtkSystem.dir/cmtkCompressedStream.cxx.o CMakeFiles/cmtkSystem.dir/cmtkCompressedStreamFile.cxx.o CMakeFiles/cmtkSystem.dir/cmtkCompressedStreamPipe.cxx.o CMakeFiles/cmtkSystem.dir/cmtkCompressedStreamReaderBase.cxx.o CMakeFiles/cmtkSystem.dir/cmtkCompressedStreamZlib.cxx.o CMakeFiles/cmtkSystem.dir/cmtkConsole.cxx.o CMakeFiles/cmtkSystem.dir/cmtkFileUtils.cxx.o CMakeFiles/cmtkSystem.dir/cmtkMemory.cxx.o CMakeFiles/cmtkSystem.dir/cmtkMountPoints.cxx.o CMakeFiles/cmtkSystem.dir/cmtkProgress.cxx.o CMakeFiles/cmtkSystem.dir/cmtkProgressConsole.cxx.o CMakeFiles/cmtkSystem.dir/cmtkRegressionTracker.cxx.o CMakeFiles/cmtkSystem.dir/cmtkStackBacktrace.cxx.o CMakeFiles/cmtkSystem.dir/cmtkStrUtility.cxx.o CMakeFiles/cmtkSystem.dir/cmtkThreads.cxx.o CMakeFiles/cmtkSystem.dir/cmtkThreadPoolThreads.cxx.o CMakeFiles/cmtkSystem.dir/cmtkThreadSemaphore.cxx.o CMakeFiles/cmtkSystem.dir/cmtkTimers.cxx.o CMakeFiles/cmtkSystem.dir/cmtkCompressedStreamBZip2.cxx.o -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: -lbz2 -lz ../../bin/libcmtkMxml.so -lfftw3_omp -lfftw3 -lfftw3_threads [ 22%] Linking CXX shared library ../../bin/libcmtkNumerics.so cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/cmake -E cmake_link_script CMakeFiles/cmtkNumerics.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -shared -Wl,-soname,libcmtkNumerics.so -o ../../bin/libcmtkNumerics.so CMakeFiles/cmtkNumerics.dir/ap.cxx.o CMakeFiles/cmtkNumerics.dir/bdsvd.cxx.o CMakeFiles/cmtkNumerics.dir/bidiagonal.cxx.o CMakeFiles/cmtkNumerics.dir/blas.cxx.o CMakeFiles/cmtkNumerics.dir/cholesky.cxx.o CMakeFiles/cmtkNumerics.dir/det.cxx.o CMakeFiles/cmtkNumerics.dir/gammaf.cxx.o CMakeFiles/cmtkNumerics.dir/hessenberg.cxx.o CMakeFiles/cmtkNumerics.dir/hsschur.cxx.o CMakeFiles/cmtkNumerics.dir/ibetaf.cxx.o CMakeFiles/cmtkNumerics.dir/lbfgsb.cxx.o CMakeFiles/cmtkNumerics.dir/lq.cxx.o CMakeFiles/cmtkNumerics.dir/lu.cxx.o CMakeFiles/cmtkNumerics.dir/normaldistr.cxx.o CMakeFiles/cmtkNumerics.dir/nsevd.cxx.o CMakeFiles/cmtkNumerics.dir/qr.cxx.o CMakeFiles/cmtkNumerics.dir/reflections.cxx.o CMakeFiles/cmtkNumerics.dir/rotations.cxx.o CMakeFiles/cmtkNumerics.dir/sblas.cxx.o CMakeFiles/cmtkNumerics.dir/sevd.cxx.o CMakeFiles/cmtkNumerics.dir/spddet.cxx.o CMakeFiles/cmtkNumerics.dir/studenttdistr.cxx.o CMakeFiles/cmtkNumerics.dir/studentttests.cxx.o CMakeFiles/cmtkNumerics.dir/svd.cxx.o CMakeFiles/cmtkNumerics.dir/tdevd.cxx.o CMakeFiles/cmtkNumerics.dir/tridiagonal.cxx.o CMakeFiles/cmtkNumerics.dir/mersenne.cxx.o -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,::::::::::::: make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[ 22%] Built target cmtkSystem -make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 22%] Built target cmtkNumerics +[ 22%] Linking CXX shared library ../../bin/libcmtkSystem.so +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/cmake -E cmake_link_script CMakeFiles/cmtkSystem.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -shared -Wl,-soname,libcmtkSystem.so -o ../../bin/libcmtkSystem.so CMakeFiles/cmtkSystem.dir/cmtkCommandLine.cxx.o CMakeFiles/cmtkSystem.dir/cmtkCommandLineCallback.cxx.o CMakeFiles/cmtkSystem.dir/cmtkCommandLineItem.cxx.o CMakeFiles/cmtkSystem.dir/cmtkCommandLineKeyToAction.cxx.o CMakeFiles/cmtkSystem.dir/cmtkCommandLineKeyToActionEnum.cxx.o CMakeFiles/cmtkSystem.dir/cmtkCommandLineKeyToActionSingle.cxx.o CMakeFiles/cmtkSystem.dir/cmtkCommandLineNonOptionParameter.cxx.o CMakeFiles/cmtkSystem.dir/cmtkCommandLineNonOptionParameterVector.cxx.o CMakeFiles/cmtkSystem.dir/cmtkCommandLineHelp.cxx.o CMakeFiles/cmtkSystem.dir/cmtkCommandLineMan.cxx.o CMakeFiles/cmtkSystem.dir/cmtkCommandLineXML.cxx.o CMakeFiles/cmtkSystem.dir/cmtkCommandLineWiki.cxx.o CMakeFiles/cmtkSystem.dir/cmtkCompressedStream.cxx.o CMakeFiles/cmtkSystem.dir/cmtkCompressedStreamFile.cxx.o CMakeFiles/cmtkSystem.dir/cmtkCompressedStreamPipe.cxx.o CMakeFiles/cmtkSystem.dir/cmtkCompressedStreamReaderBase.cxx.o CMakeFiles/cmtkSystem.dir/cmtkCompressedStreamZlib.cxx.o CMakeFiles/cmtkSystem.dir/cmtkConsole.cxx.o CMakeFiles/cmtkSystem.dir/cmtkFileUtils.cxx.o CMakeFiles/cmtkSystem.dir/cmtkMemory.cxx.o CMakeFiles/cmtkSystem.dir/cmtkMountPoints.cxx.o CMakeFiles/cmtkSystem.dir/cmtkProgress.cxx.o CMakeFiles/cmtkSystem.dir/cmtkProgressConsole.cxx.o CMakeFiles/cmtkSystem.dir/cmtkRegressionTracker.cxx.o CMakeFiles/cmtkSystem.dir/cmtkStackBacktrace.cxx.o CMakeFiles/cmtkSystem.dir/cmtkStrUtility.cxx.o CMakeFiles/cmtkSystem.dir/cmtkThreads.cxx.o CMakeFiles/cmtkSystem.dir/cmtkThreadPoolThreads.cxx.o CMakeFiles/cmtkSystem.dir/cmtkThreadSemaphore.cxx.o CMakeFiles/cmtkSystem.dir/cmtkTimers.cxx.o CMakeFiles/cmtkSystem.dir/cmtkCompressedStreamBZip2.cxx.o -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: -lbz2 -lz ../../bin/libcmtkMxml.so -lfftw3_omp -lfftw3 -lfftw3_threads +make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' +[ 22%] Built target cmtkSystem make -f libs/Base/CMakeFiles/cmtkBase.dir/build.make libs/Base/CMakeFiles/cmtkBase.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/libs/Base /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base/CMakeFiles/cmtkBase.dir/DependInfo.cmake --color= @@ -1525,41 +1568,39 @@ make -f libs/Base/CMakeFiles/cmtkBase.dir/build.make libs/Base/CMakeFiles/cmtkBase.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 22%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkActiveDeformationModel.cxx.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkActiveDeformationModel.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkActiveDeformationModel.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkActiveDeformationModel.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkActiveDeformationModel.cxx +[ 22%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkAffineXformUniformVolume.cxx.o [ 23%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkAffineXform.cxx.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkAffineXform.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkAffineXform.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkAffineXform.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkAffineXform.cxx [ 23%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkActiveShapeModel.cxx.o +[ 23%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkAnatomicalOrientationPermutationMatrix.cxx.o +[ 23%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkAnatomicalOrientationBase.cxx.o +[ 23%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkBitVector.cxx.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkActiveDeformationModel.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkActiveDeformationModel.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkActiveDeformationModel.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkActiveDeformationModel.cxx +[ 23%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkDataGrid.cxx.o [ 23%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkAnatomicalOrientation.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkActiveShapeModel.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkActiveShapeModel.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkActiveShapeModel.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkActiveShapeModel.cxx -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkAnatomicalOrientation.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkAnatomicalOrientation.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkAnatomicalOrientation.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkAnatomicalOrientation.cxx -[ 23%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkAffineXformUniformVolume.cxx.o -[ 23%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkAnatomicalOrientationBase.cxx.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkAffineXform.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkAffineXform.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkAffineXform.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkAffineXform.cxx cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkAffineXformUniformVolume.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkAffineXformUniformVolume.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkAffineXformUniformVolume.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkAffineXformUniformVolume.cxx cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkAnatomicalOrientationBase.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkAnatomicalOrientationBase.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkAnatomicalOrientationBase.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkAnatomicalOrientationBase.cxx -[ 23%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkAnatomicalOrientationPermutationMatrix.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkAnatomicalOrientationPermutationMatrix.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkAnatomicalOrientationPermutationMatrix.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkAnatomicalOrientationPermutationMatrix.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkAnatomicalOrientationPermutationMatrix.cxx -[ 23%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkBitVector.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkBitVector.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkBitVector.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkBitVector.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkBitVector.cxx +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkDataGrid.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkDataGrid.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkDataGrid.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkDataGrid.cxx [ 24%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkCompatibilityMatrix4x4.cxx.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkAnatomicalOrientation.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkAnatomicalOrientation.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkAnatomicalOrientation.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkAnatomicalOrientation.cxx +[ 24%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkDataGridConnectedComponents.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkCompatibilityMatrix4x4.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkCompatibilityMatrix4x4.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkCompatibilityMatrix4x4.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkCompatibilityMatrix4x4.cxx -[ 24%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkDataGrid.cxx.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkDataGrid.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkDataGrid.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkDataGrid.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkDataGrid.cxx [ 24%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkDataGrid_Crop.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkDataGrid_Crop.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkDataGrid_Crop.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkDataGrid_Crop.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkDataGrid_Crop.cxx [ 24%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkDataGridFilter.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkDataGridFilter.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkDataGridFilter.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkDataGridFilter.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkDataGridFilter.cxx +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkDataGridConnectedComponents.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkDataGridConnectedComponents.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkDataGridConnectedComponents.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkDataGridConnectedComponents.cxx [ 25%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkDataGridLocalCorrelation.cxx.o -[ 25%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkDataGridConnectedComponents.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkDataGridLocalCorrelation.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkDataGridLocalCorrelation.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkDataGridLocalCorrelation.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkDataGridLocalCorrelation.cxx [ 25%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkDataGridMorphologicalOperators.cxx.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkDataGridConnectedComponents.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkDataGridConnectedComponents.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkDataGridConnectedComponents.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkDataGridConnectedComponents.cxx cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkDataGridMorphologicalOperators.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkDataGridMorphologicalOperators.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkDataGridMorphologicalOperators.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkDataGridMorphologicalOperators.cxx [ 25%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkDeformationField.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkDeformationField.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkDeformationField.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkDeformationField.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkDeformationField.cxx [ 25%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkDeformationField_Jacobian.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkDeformationField_Jacobian.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkDeformationField_Jacobian.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkDeformationField_Jacobian.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkDeformationField_Jacobian.cxx -[ 25%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkDirectionSet.cxx.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkDirectionSet.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkDirectionSet.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkDirectionSet.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkDirectionSet.cxx In file included from /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkFixedSquareMatrix.h:254, from /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkMatrix4x4.h:38, from /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkCompatibilityMatrix4x4.h:38, @@ -1571,6 +1612,8 @@ /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkFixedSquareMatrix.h:177:29: note: destination object 'cmtk::FixedSquareMatrix<4, double>::m_Matrix' of size 32 177 | typename Self::ScalarType m_Matrix[NDIM][NDIM]; | ^~~~~~~~ +[ 25%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkDirectionSet.cxx.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkDirectionSet.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkDirectionSet.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkDirectionSet.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkDirectionSet.cxx [ 26%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkFilterVolume.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkFilterVolume.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkFilterVolume.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkFilterVolume.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkFilterVolume.cxx [ 26%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkFitAffineToLandmarks.cxx.o @@ -1615,16 +1658,6 @@ cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkImageOperationMapValues.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkImageOperationMapValues.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkImageOperationMapValues.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkImageOperationMapValues.cxx [ 30%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkImageOperationRegionFilter.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkImageOperationRegionFilter.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkImageOperationRegionFilter.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkImageOperationRegionFilter.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkImageOperationRegionFilter.cxx -[ 30%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkImageOperationResampleIsotropic.cxx.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkImageOperationResampleIsotropic.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkImageOperationResampleIsotropic.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkImageOperationResampleIsotropic.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkImageOperationResampleIsotropic.cxx -[ 30%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkImageOperationScaleToRange.cxx.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkImageOperationScaleToRange.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkImageOperationScaleToRange.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkImageOperationScaleToRange.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkImageOperationScaleToRange.cxx -[ 30%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkImageOperationThreshold.cxx.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkImageOperationThreshold.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkImageOperationThreshold.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkImageOperationThreshold.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkImageOperationThreshold.cxx -[ 31%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkImageOperationOtsuThreshold.cxx.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkImageOperationOtsuThreshold.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkImageOperationOtsuThreshold.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkImageOperationOtsuThreshold.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkImageOperationOtsuThreshold.cxx -[ 31%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkImageOperationPruneHistogram.cxx.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkImageOperationPruneHistogram.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkImageOperationPruneHistogram.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkImageOperationPruneHistogram.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkImageOperationPruneHistogram.cxx /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkImageOperationCropThreshold.cxx: In member function 'virtual cmtk::UniformVolume::SmartPtr cmtk::ImageOperationCropThreshold::Apply(cmtk::UniformVolume::SmartPtr&)': /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkImageOperationCropThreshold.cxx:41:24: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long long int' [-Wformat=] 41 | printf( "AutoCrop %d,%d,%d,%d,%d,%d\n", cropRegion.From()[0], cropRegion.From()[1], cropRegion.From()[2], cropRegion.To()[0], cropRegion.To()[1], cropRegion.To()[2] ); @@ -1662,10 +1695,14 @@ | | | int | %lld -[ 31%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkImageOperationRevert.cxx.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkImageOperationRevert.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkImageOperationRevert.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkImageOperationRevert.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkImageOperationRevert.cxx -[ 31%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkJointHistogram.cxx.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkJointHistogram.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkJointHistogram.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkJointHistogram.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkJointHistogram.cxx +[ 30%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkImageOperationResampleIsotropic.cxx.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkImageOperationResampleIsotropic.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkImageOperationResampleIsotropic.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkImageOperationResampleIsotropic.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkImageOperationResampleIsotropic.cxx +[ 30%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkImageOperationScaleToRange.cxx.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkImageOperationScaleToRange.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkImageOperationScaleToRange.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkImageOperationScaleToRange.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkImageOperationScaleToRange.cxx +[ 30%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkImageOperationThreshold.cxx.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkImageOperationThreshold.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkImageOperationThreshold.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkImageOperationThreshold.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkImageOperationThreshold.cxx +[ 31%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkImageOperationOtsuThreshold.cxx.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkImageOperationOtsuThreshold.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkImageOperationOtsuThreshold.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkImageOperationOtsuThreshold.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkImageOperationOtsuThreshold.cxx /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkImageOperationDownsample.cxx: In static member function 'static void cmtk::ImageOperationDownsample::NewGeneric(bool, const char*)': /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkImageOperationDownsample.cxx:54:43: warning: format '%d' expects argument of type 'int*', but argument 3 has type 'cmtk::Types::GridIndexType*' {aka 'long long int*'} [-Wformat=] 54 | const size_t nFactors = sscanf( arg, "%5d,%5d,%5d", &factorsX, &factorsY, &factorsZ ); @@ -1685,6 +1722,12 @@ | | | | int* cmtk::Types::GridIndexType* {aka long long int*} | %5lld +[ 31%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkImageOperationPruneHistogram.cxx.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkImageOperationPruneHistogram.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkImageOperationPruneHistogram.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkImageOperationPruneHistogram.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkImageOperationPruneHistogram.cxx +[ 31%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkImageOperationRevert.cxx.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkImageOperationRevert.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkImageOperationRevert.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkImageOperationRevert.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkImageOperationRevert.cxx +[ 31%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkJointHistogram.cxx.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkJointHistogram.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkJointHistogram.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkJointHistogram.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkJointHistogram.cxx [ 31%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkJointHistogramBase.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkJointHistogramBase.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkJointHistogramBase.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkJointHistogramBase.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkJointHistogramBase.cxx [ 32%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkLandmark.cxx.o @@ -1692,8 +1735,8 @@ [ 32%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkLandmarkPair.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkLandmarkPair.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkLandmarkPair.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkLandmarkPair.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkLandmarkPair.cxx [ 32%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkLandmarkList.cxx.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkLandmarkList.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkLandmarkList.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkLandmarkList.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkLandmarkList.cxx [ 32%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkLandmarkPairList.cxx.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkLandmarkList.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkLandmarkList.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkLandmarkList.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkLandmarkList.cxx cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkLandmarkPairList.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkLandmarkPairList.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkLandmarkPairList.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkLandmarkPairList.cxx [ 32%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkMagphanEMR051.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkMagphanEMR051.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkMagphanEMR051.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkMagphanEMR051.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkMagphanEMR051.cxx @@ -1704,8 +1747,8 @@ [ 33%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkMathUtil_LinAlg.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkMathUtil_LinAlg.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkMathUtil_LinAlg.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkMathUtil_LinAlg.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkMathUtil_LinAlg.cxx [ 33%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkMathUtil_Random.cxx.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkMathUtil_Random.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkMathUtil_Random.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkMathUtil_Random.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkMathUtil_Random.cxx [ 33%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkMathUtil_Statistics.cxx.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkMathUtil_Random.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkMathUtil_Random.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkMathUtil_Random.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkMathUtil_Random.cxx cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkMathUtil_Statistics.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkMathUtil_Statistics.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkMathUtil_Statistics.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkMathUtil_Statistics.cxx [ 34%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkMatrix3x3.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkMatrix3x3.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkMatrix3x3.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkMatrix3x3.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkMatrix3x3.cxx @@ -1802,31 +1845,31 @@ make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f libs/IO/CMakeFiles/cmtkIO.dir/build.make libs/IO/CMakeFiles/cmtkIO.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[ 42%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkAffineXformITKIO.cxx.o [ 42%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkSplineWarpXformITKIO.cxx.o +[ 42%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkClassStreamAffineXform.cxx.o +[ 43%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkClassStreamParametricPlane.cxx.o +[ 43%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkAffineXformITKIO.cxx.o +[ 43%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkClassStreamStudyList.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkAffineXformITKIO.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkAffineXformITKIO.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkAffineXformITKIO.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkAffineXformITKIO.cxx cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkSplineWarpXformITKIO.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkSplineWarpXformITKIO.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkSplineWarpXformITKIO.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkSplineWarpXformITKIO.cxx -[ 43%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkClassStreamParametricPlane.cxx.o -[ 43%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkClassStreamAffineXform.cxx.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkClassStreamParametricPlane.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkClassStreamParametricPlane.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkClassStreamParametricPlane.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkClassStreamParametricPlane.cxx -[ 43%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkClassStreamPolynomialXform.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkClassStreamAffineXform.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkClassStreamAffineXform.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkClassStreamAffineXform.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkClassStreamAffineXform.cxx -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkClassStreamPolynomialXform.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkClassStreamPolynomialXform.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkClassStreamPolynomialXform.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkClassStreamPolynomialXform.cxx -[ 43%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkClassStreamStudyList.cxx.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkClassStreamStudyList.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkClassStreamStudyList.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkClassStreamStudyList.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkClassStreamStudyList.cxx +[ 43%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkClassStreamPolynomialXform.cxx.o [ 43%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkClassStreamWarpXform.cxx.o [ 43%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkFileFormat.cxx.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkClassStreamParametricPlane.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkClassStreamParametricPlane.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkClassStreamParametricPlane.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkClassStreamParametricPlane.cxx +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkClassStreamPolynomialXform.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkClassStreamPolynomialXform.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkClassStreamPolynomialXform.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkClassStreamPolynomialXform.cxx +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkClassStreamStudyList.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkClassStreamStudyList.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkClassStreamStudyList.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkClassStreamStudyList.cxx cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkClassStreamWarpXform.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkClassStreamWarpXform.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkClassStreamWarpXform.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkClassStreamWarpXform.cxx cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkFileFormat.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkFileFormat.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkFileFormat.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkFileFormat.cxx -[ 44%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkImageFileDICOM.cxx.o [ 44%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkGroupwiseRegistrationFunctionalIO.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkGroupwiseRegistrationFunctionalIO.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkGroupwiseRegistrationFunctionalIO.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkGroupwiseRegistrationFunctionalIO.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkGroupwiseRegistrationFunctionalIO.cxx +[ 44%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkImageFileDICOM.cxx.o [ 44%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkImageOperationApplyMask.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkImageFileDICOM.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkImageFileDICOM.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkImageFileDICOM.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkImageFileDICOM.cxx -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkImageOperationApplyMask.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkImageOperationApplyMask.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkImageOperationApplyMask.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkImageOperationApplyMask.cxx [ 44%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkImageOperationMatchIntensities.cxx.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkImageOperationMatchIntensities.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkImageOperationMatchIntensities.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkImageOperationMatchIntensities.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkImageOperationMatchIntensities.cxx [ 44%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkImageStackDICOM.cxx.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkImageOperationApplyMask.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkImageOperationApplyMask.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkImageOperationApplyMask.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkImageOperationApplyMask.cxx +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkImageOperationMatchIntensities.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkImageOperationMatchIntensities.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkImageOperationMatchIntensities.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkImageOperationMatchIntensities.cxx cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkImageStackDICOM.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkImageStackDICOM.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkImageStackDICOM.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkImageStackDICOM.cxx [ 45%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkLandmarkIO.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkLandmarkIO.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkLandmarkIO.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkLandmarkIO.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkLandmarkIO.cxx @@ -1840,6 +1883,8 @@ cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkSiemensCSAHeader.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkSiemensCSAHeader.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkSiemensCSAHeader.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkSiemensCSAHeader.cxx [ 45%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkStudy.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkStudy.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkStudy.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkStudy.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkStudy.cxx +[ 46%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkStudyList.cxx.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkStudyList.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkStudyList.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkStudyList.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkStudyList.cxx In file included from /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkImageFileDICOM.cxx:33: /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkImageFileDICOM.h:179:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 179 | std::auto_ptr m_Dataset; @@ -1882,12 +1927,16 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +[ 46%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkTypedStream.cxx.o /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkImageFileDICOM.cxx:170:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 170 | this->m_Document = std::auto_ptr( new DiDocument( this->m_Dataset.get(), this->m_Dataset->getOriginalXfer(), CIF_AcrNemaCompatibility ) ); | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkTypedStream.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkTypedStream.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkTypedStream.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkTypedStream.cxx +[ 46%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkTypedStreamInput.cxx.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkTypedStreamInput.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkTypedStreamInput.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkTypedStreamInput.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkTypedStreamInput.cxx In file included from /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkImageStackDICOM.h:38, from /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkImageStackDICOM.cxx:33: /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkImageFileDICOM.h:179:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] @@ -1918,28 +1967,24 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -[ 46%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkStudyList.cxx.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkStudyList.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkStudyList.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkStudyList.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkStudyList.cxx -[ 46%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkTypedStream.cxx.o -[ 46%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkTypedStreamInput.cxx.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkTypedStream.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkTypedStream.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkTypedStream.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkTypedStream.cxx -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkTypedStreamInput.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkTypedStreamInput.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkTypedStreamInput.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkTypedStreamInput.cxx [ 46%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkTypedStreamOutput.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkTypedStreamOutput.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkTypedStreamOutput.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkTypedStreamOutput.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkTypedStreamOutput.cxx [ 46%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkTypedStreamStudylist.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkTypedStreamStudylist.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkTypedStreamStudylist.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkTypedStreamStudylist.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkTypedStreamStudylist.cxx [ 47%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkVolumeFromFile.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkVolumeFromFile.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkVolumeFromFile.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkVolumeFromFile.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkVolumeFromFile.cxx -[ 47%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileBioRad.cxx.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileBioRad.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileBioRad.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileBioRad.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkVolumeFromFileBioRad.cxx [ 47%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileAnalyze.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileAnalyze.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileAnalyze.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileAnalyze.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkVolumeFromFileAnalyze.cxx +[ 47%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileBioRad.cxx.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileBioRad.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileBioRad.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileBioRad.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkVolumeFromFileBioRad.cxx [ 47%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileMetaFile.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileMetaFile.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileMetaFile.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileMetaFile.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkVolumeFromFileMetaFile.cxx [ 47%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileNRRD.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileNRRD.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileNRRD.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileNRRD.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkVolumeFromFileNRRD.cxx [ 48%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileNifti.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileNifti.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileNifti.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileNifti.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkVolumeFromFileNifti.cxx +[ 48%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileVanderbilt.cxx.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileVanderbilt.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileVanderbilt.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileVanderbilt.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkVolumeFromFileVanderbilt.cxx /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkTypedStreamOutput.cxx: In member function 'cmtk::TypedStream::Condition cmtk::TypedStreamOutput::WriteIntArray(const char*, const long long int*, int, int)': /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkTypedStreamOutput.cxx:564:25: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'long long int' [-Wformat=] 564 | fprintf( File, "%ld ", array[i] ); @@ -1947,8 +1992,6 @@ | | | | long int long long int | %lld -[ 48%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileVanderbilt.cxx.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileVanderbilt.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileVanderbilt.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileVanderbilt.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkVolumeFromFileVanderbilt.cxx [ 48%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkVolumeFromSlices.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkVolumeFromSlices.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkVolumeFromSlices.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkVolumeFromSlices.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkVolumeFromSlices.cxx [ 48%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkVolumeIO.cxx.o @@ -1959,6 +2002,12 @@ cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkXformListIO.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkXformListIO.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkXformListIO.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkXformListIO.cxx [ 49%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkXformIONifti.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkXformIONifti.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkXformIONifti.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkXformIONifti.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkXformIONifti.cxx +[ 49%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkXformIONrrd.cxx.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkXformIONrrd.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkXformIONrrd.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkXformIONrrd.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkXformIONrrd.cxx +[ 49%] Building C object libs/IO/CMakeFiles/cmtkIO.dir/nifti1_io_math.c.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/nifti1_io_math.c.o -MF CMakeFiles/cmtkIO.dir/nifti1_io_math.c.o.d -o CMakeFiles/cmtkIO.dir/nifti1_io_math.c.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/nifti1_io_math.c +[ 49%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkDICOM.cxx.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkDICOM.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkDICOM.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkDICOM.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkDICOM.cxx /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkVolumeFromFileMetaFile.cxx: In static member function 'static void cmtk::VolumeFromFile::WriteMetaImage(const std::string&, const cmtk::UniformVolume&)': /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkVolumeFromFileMetaFile.cxx:87:33: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long long int' [-Wformat=] 87 | fprintf( outfile, "DimSize = %d %d %d\n", volume.m_Dims[AXIS_X], volume.m_Dims[AXIS_Y], volume.m_Dims[AXIS_Z] ); @@ -1978,22 +2027,16 @@ | | | int | %lld -[ 49%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkXformIONrrd.cxx.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkXformIONrrd.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkXformIONrrd.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkXformIONrrd.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkXformIONrrd.cxx -[ 49%] Building C object libs/IO/CMakeFiles/cmtkIO.dir/nifti1_io_math.c.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/nifti1_io_math.c.o -MF CMakeFiles/cmtkIO.dir/nifti1_io_math.c.o.d -o CMakeFiles/cmtkIO.dir/nifti1_io_math.c.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/nifti1_io_math.c -[ 49%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkDICOM.cxx.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkDICOM.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkDICOM.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkDICOM.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkDICOM.cxx -[ 50%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkVolumeFromStudy.cxx.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkVolumeFromStudy.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkVolumeFromStudy.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkVolumeFromStudy.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkVolumeFromStudy.cxx -[ 50%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileDICOM.cxx.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileDICOM.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileDICOM.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileDICOM.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkVolumeFromFileDICOM.cxx -[ 50%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkSQLite.cxx.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkSQLite.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkSQLite.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkSQLite.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkSQLite.cxx /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkVolumeFromFileVanderbilt.cxx: In static member function 'static const cmtk::UniformVolume::SmartPtr cmtk::VolumeFromFile::ReadVanderbilt(const std::string&)': /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkVolumeFromFileVanderbilt.cxx:58:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 58 | fgets( line, 96, fp ); | ~~~~~^~~~~~~~~~~~~~~~ +[ 49%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileDICOM.cxx.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileDICOM.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileDICOM.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileDICOM.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkVolumeFromFileDICOM.cxx +[ 50%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkVolumeFromStudy.cxx.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkVolumeFromStudy.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkVolumeFromStudy.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkVolumeFromStudy.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkVolumeFromStudy.cxx +[ 50%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkSQLite.cxx.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkSQLite.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkSQLite.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkSQLite.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkSQLite.cxx In file included from /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkDICOM.cxx:35: /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkDICOM.h:137:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 137 | std::auto_ptr m_Document; @@ -2066,37 +2109,37 @@ make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f libs/Registration/CMakeFiles/cmtkRegistration.dir/build.make libs/Registration/CMakeFiles/cmtkRegistration.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' +[ 51%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkBestDirectionOptimizer.cxx.o [ 51%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkAffineRegistrationCommandLine.cxx.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkAffineRegistrationCommandLine.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkAffineRegistrationCommandLine.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkAffineRegistrationCommandLine.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkAffineRegistrationCommandLine.cxx [ 51%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkAffineRegistration.cxx.o -[ 51%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkBestDirectionOptimizer.cxx.o +[ 51%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkCongealingFunctional.cxx.o [ 51%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkBestNeighbourOptimizer.cxx.o +[ 52%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkEchoPlanarUnwarpFunctional.cxx.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkAffineRegistrationCommandLine.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkAffineRegistrationCommandLine.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkAffineRegistrationCommandLine.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkAffineRegistrationCommandLine.cxx cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkAffineRegistration.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkAffineRegistration.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkAffineRegistration.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkAffineRegistration.cxx cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkBestDirectionOptimizer.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkBestDirectionOptimizer.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkBestDirectionOptimizer.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkBestDirectionOptimizer.cxx -[ 51%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkCongealingFunctional.cxx.o +[ 52%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkElasticRegistrationCommandLine.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkBestNeighbourOptimizer.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkBestNeighbourOptimizer.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkBestNeighbourOptimizer.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkBestNeighbourOptimizer.cxx -[ 52%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkEchoPlanarUnwarpFunctional.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkCongealingFunctional.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkCongealingFunctional.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkCongealingFunctional.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkCongealingFunctional.cxx -[ 52%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkElasticRegistrationCommandLine.cxx.o +[ 52%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalAffineInitializer.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkEchoPlanarUnwarpFunctional.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkEchoPlanarUnwarpFunctional.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkEchoPlanarUnwarpFunctional.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkEchoPlanarUnwarpFunctional.cxx -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkElasticRegistrationCommandLine.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkElasticRegistrationCommandLine.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkElasticRegistrationCommandLine.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkElasticRegistrationCommandLine.cxx [ 52%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkElasticRegistration.cxx.o -[ 52%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalAffineInitializer.cxx.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkElasticRegistrationCommandLine.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkElasticRegistrationCommandLine.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkElasticRegistrationCommandLine.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkElasticRegistrationCommandLine.cxx +[ 52%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalBase.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkElasticRegistration.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkElasticRegistration.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkElasticRegistration.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkElasticRegistration.cxx -[ 53%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalXformTemplate.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalAffineInitializer.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalAffineInitializer.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalAffineInitializer.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkGroupwiseRegistrationFunctionalAffineInitializer.cxx -[ 53%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalBase.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalBase.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalBase.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalBase.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkGroupwiseRegistrationFunctionalBase.cxx -[ 53%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalXformTemplate_Affine_IO.cxx.o +[ 53%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalXformTemplate.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalXformTemplate.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalXformTemplate.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalXformTemplate.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkGroupwiseRegistrationFunctionalXformTemplate.cxx +[ 53%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalXformTemplate_Affine_IO.cxx.o [ 53%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalXformTemplate_SplineWarp.cxx.o +[ 53%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalXformTemplate_SplineWarp_IO.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalXformTemplate_Affine_IO.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalXformTemplate_Affine_IO.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalXformTemplate_Affine_IO.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkGroupwiseRegistrationFunctionalXformTemplate_Affine_IO.cxx cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalXformTemplate_SplineWarp.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalXformTemplate_SplineWarp.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalXformTemplate_SplineWarp.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkGroupwiseRegistrationFunctionalXformTemplate_SplineWarp.cxx -[ 53%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalXformTemplate_SplineWarp_IO.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalXformTemplate_SplineWarp_IO.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalXformTemplate_SplineWarp_IO.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalXformTemplate_SplineWarp_IO.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkGroupwiseRegistrationFunctionalXformTemplate_SplineWarp_IO.cxx [ 53%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalXformTemplateBase.cxx.o -[ 54%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationOutput.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalXformTemplateBase.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalXformTemplateBase.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalXformTemplateBase.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkGroupwiseRegistrationFunctionalXformTemplateBase.cxx +[ 54%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationOutput.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationOutput.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationOutput.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationOutput.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkGroupwiseRegistrationOutput.cxx [ 54%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationRMIFunctional.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationRMIFunctional.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationRMIFunctional.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationRMIFunctional.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkGroupwiseRegistrationRMIFunctional.cxx @@ -2210,36 +2253,36 @@ make -f libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/build.make libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 63%] Building CXX object libs/Recon/CMakeFiles/cmtkRecon.dir/cmtkInverseInterpolationVolumeReconstructionBase.cxx.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Recon && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRecon_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Recon/CMakeFiles/cmtkRecon.dir/cmtkInverseInterpolationVolumeReconstructionBase.cxx.o -MF CMakeFiles/cmtkRecon.dir/cmtkInverseInterpolationVolumeReconstructionBase.cxx.o.d -o CMakeFiles/cmtkRecon.dir/cmtkInverseInterpolationVolumeReconstructionBase.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Recon/cmtkInverseInterpolationVolumeReconstructionBase.cxx [ 63%] Building CXX object libs/Recon/CMakeFiles/cmtkRecon.dir/cmtkVolumeInjectionReconstruction.cxx.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Recon && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRecon_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Recon/CMakeFiles/cmtkRecon.dir/cmtkInverseInterpolationVolumeReconstructionBase.cxx.o -MF CMakeFiles/cmtkRecon.dir/cmtkInverseInterpolationVolumeReconstructionBase.cxx.o.d -o CMakeFiles/cmtkRecon.dir/cmtkInverseInterpolationVolumeReconstructionBase.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Recon/cmtkInverseInterpolationVolumeReconstructionBase.cxx [ 63%] Building CXX object libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkAtlasSegmentation.cxx.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Recon && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRecon_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Recon/CMakeFiles/cmtkRecon.dir/cmtkVolumeInjectionReconstruction.cxx.o -MF CMakeFiles/cmtkRecon.dir/cmtkVolumeInjectionReconstruction.cxx.o.d -o CMakeFiles/cmtkRecon.dir/cmtkVolumeInjectionReconstruction.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Recon/cmtkVolumeInjectionReconstruction.cxx -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Segmentation && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSegmentation_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkAtlasSegmentation.cxx.o -MF CMakeFiles/cmtkSegmentation.dir/cmtkAtlasSegmentation.cxx.o.d -o CMakeFiles/cmtkSegmentation.dir/cmtkAtlasSegmentation.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Segmentation/cmtkAtlasSegmentation.cxx -[ 63%] Building CXX object libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkEntropyMinimizationIntensityCorrectionFunctionalBase.cxx.o [ 64%] Building CXX object libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkEntropyMinimizationIntensityCorrectionFunctional.cxx.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Segmentation && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSegmentation_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkEntropyMinimizationIntensityCorrectionFunctionalBase.cxx.o -MF CMakeFiles/cmtkSegmentation.dir/cmtkEntropyMinimizationIntensityCorrectionFunctionalBase.cxx.o.d -o CMakeFiles/cmtkSegmentation.dir/cmtkEntropyMinimizationIntensityCorrectionFunctionalBase.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Segmentation/cmtkEntropyMinimizationIntensityCorrectionFunctionalBase.cxx +[ 64%] Building CXX object libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationLocalWeighting.cxx.o [ 64%] Building CXX object libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationLocalShapeBasedAveraging.cxx.o +[ 64%] Building CXX object libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationLocalVoting.cxx.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Segmentation && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSegmentation_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkAtlasSegmentation.cxx.o -MF CMakeFiles/cmtkSegmentation.dir/cmtkAtlasSegmentation.cxx.o.d -o CMakeFiles/cmtkSegmentation.dir/cmtkAtlasSegmentation.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Segmentation/cmtkAtlasSegmentation.cxx +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Recon && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRecon_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Recon/CMakeFiles/cmtkRecon.dir/cmtkVolumeInjectionReconstruction.cxx.o -MF CMakeFiles/cmtkRecon.dir/cmtkVolumeInjectionReconstruction.cxx.o.d -o CMakeFiles/cmtkRecon.dir/cmtkVolumeInjectionReconstruction.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Recon/cmtkVolumeInjectionReconstruction.cxx [ 64%] Building CXX object libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationLocalBinaryShapeBasedAveraging.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Segmentation && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSegmentation_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkEntropyMinimizationIntensityCorrectionFunctional.cxx.o -MF CMakeFiles/cmtkSegmentation.dir/cmtkEntropyMinimizationIntensityCorrectionFunctional.cxx.o.d -o CMakeFiles/cmtkSegmentation.dir/cmtkEntropyMinimizationIntensityCorrectionFunctional.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Segmentation/cmtkEntropyMinimizationIntensityCorrectionFunctional.cxx +[ 64%] Building CXX object libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkEntropyMinimizationIntensityCorrectionFunctionalBase.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Segmentation && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSegmentation_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationLocalBinaryShapeBasedAveraging.cxx.o -MF CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationLocalBinaryShapeBasedAveraging.cxx.o.d -o CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationLocalBinaryShapeBasedAveraging.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Segmentation/cmtkLabelCombinationLocalBinaryShapeBasedAveraging.cxx +[ 64%] Building CXX object libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationSTAPLE.cxx.o +[ 64%] Building CXX object libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationVoting.cxx.o +[ 64%] Building CXX object libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationShapeBasedAveraging.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Segmentation && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSegmentation_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationLocalShapeBasedAveraging.cxx.o -MF CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationLocalShapeBasedAveraging.cxx.o.d -o CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationLocalShapeBasedAveraging.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Segmentation/cmtkLabelCombinationLocalShapeBasedAveraging.cxx -[ 64%] Building CXX object libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationLocalVoting.cxx.o +[ 65%] Building CXX object libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationMultiClassSTAPLE.cxx.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Segmentation && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSegmentation_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkEntropyMinimizationIntensityCorrectionFunctionalBase.cxx.o -MF CMakeFiles/cmtkSegmentation.dir/cmtkEntropyMinimizationIntensityCorrectionFunctionalBase.cxx.o.d -o CMakeFiles/cmtkSegmentation.dir/cmtkEntropyMinimizationIntensityCorrectionFunctionalBase.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Segmentation/cmtkEntropyMinimizationIntensityCorrectionFunctionalBase.cxx +[ 65%] Building CXX object libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationShapeBasedAveragingInterpolation.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Segmentation && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSegmentation_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationLocalVoting.cxx.o -MF CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationLocalVoting.cxx.o.d -o CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationLocalVoting.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Segmentation/cmtkLabelCombinationLocalVoting.cxx -[ 64%] Building CXX object libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationLocalWeighting.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Segmentation && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSegmentation_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationLocalWeighting.cxx.o -MF CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationLocalWeighting.cxx.o.d -o CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationLocalWeighting.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Segmentation/cmtkLabelCombinationLocalWeighting.cxx -[ 64%] Building CXX object libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationSTAPLE.cxx.o -[ 65%] Building CXX object libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationMultiClassSTAPLE.cxx.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Segmentation && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSegmentation_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationSTAPLE.cxx.o -MF CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationSTAPLE.cxx.o.d -o CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationSTAPLE.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Segmentation/cmtkLabelCombinationSTAPLE.cxx -[ 65%] Building CXX object libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationVoting.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Segmentation && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSegmentation_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationMultiClassSTAPLE.cxx.o -MF CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationMultiClassSTAPLE.cxx.o.d -o CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationMultiClassSTAPLE.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Segmentation/cmtkLabelCombinationMultiClassSTAPLE.cxx -[ 65%] Building CXX object libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationShapeBasedAveraging.cxx.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Segmentation && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSegmentation_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationSTAPLE.cxx.o -MF CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationSTAPLE.cxx.o.d -o CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationSTAPLE.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Segmentation/cmtkLabelCombinationSTAPLE.cxx cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Segmentation && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSegmentation_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationVoting.cxx.o -MF CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationVoting.cxx.o.d -o CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationVoting.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Segmentation/cmtkLabelCombinationVoting.cxx cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Segmentation && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSegmentation_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationShapeBasedAveraging.cxx.o -MF CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationShapeBasedAveraging.cxx.o.d -o CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationShapeBasedAveraging.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Segmentation/cmtkLabelCombinationShapeBasedAveraging.cxx -[ 65%] Building CXX object libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationShapeBasedAveragingInterpolation.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Segmentation && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSegmentation_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationShapeBasedAveragingInterpolation.cxx.o -MF CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationShapeBasedAveragingInterpolation.cxx.o.d -o CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationShapeBasedAveragingInterpolation.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Segmentation/cmtkLabelCombinationShapeBasedAveragingInterpolation.cxx [ 66%] Building CXX object libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkLeastSquaresPolynomialIntensityBiasField.cxx.o -[ 66%] Building CXX object libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkOverlapMeasures.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Segmentation && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSegmentation_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkLeastSquaresPolynomialIntensityBiasField.cxx.o -MF CMakeFiles/cmtkSegmentation.dir/cmtkLeastSquaresPolynomialIntensityBiasField.cxx.o.d -o CMakeFiles/cmtkSegmentation.dir/cmtkLeastSquaresPolynomialIntensityBiasField.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Segmentation/cmtkLeastSquaresPolynomialIntensityBiasField.cxx +[ 66%] Building CXX object libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkOverlapMeasures.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Segmentation && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSegmentation_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkOverlapMeasures.cxx.o -MF CMakeFiles/cmtkSegmentation.dir/cmtkOverlapMeasures.cxx.o.d -o CMakeFiles/cmtkSegmentation.dir/cmtkOverlapMeasures.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Segmentation/cmtkOverlapMeasures.cxx [ 66%] Building CXX object libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkSimpleLevelset.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Segmentation && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSegmentation_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkSimpleLevelset.cxx.o -MF CMakeFiles/cmtkSegmentation.dir/cmtkSimpleLevelset.cxx.o.d -o CMakeFiles/cmtkSegmentation.dir/cmtkSimpleLevelset.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Segmentation/cmtkSimpleLevelset.cxx @@ -2266,129 +2309,121 @@ make -f apps/CMakeFiles/groupwise_init.dir/build.make apps/CMakeFiles/groupwise_init.dir/depend make -f apps/CMakeFiles/groupwise_affine.dir/build.make apps/CMakeFiles/groupwise_affine.dir/depend make -f apps/CMakeFiles/groupwise_warp.dir/build.make apps/CMakeFiles/groupwise_warp.dir/depend +make -f apps/CMakeFiles/asegment.dir/build.make apps/CMakeFiles/asegment.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/avg_adm.dir/DependInfo.cmake --color= -make -f apps/CMakeFiles/asegment.dir/build.make apps/CMakeFiles/asegment.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/describe.dir/DependInfo.cmake --color= +make -f apps/CMakeFiles/average_affine.dir/build.make apps/CMakeFiles/average_affine.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/groupwise_init.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/groupwise_affine.dir/DependInfo.cmake --color= +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/groupwise_init.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/groupwise_warp.dir/DependInfo.cmake --color= +make -f apps/CMakeFiles/average_images.dir/build.make apps/CMakeFiles/average_images.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/asegment.dir/DependInfo.cmake --color= -make -f apps/CMakeFiles/average_affine.dir/build.make apps/CMakeFiles/average_affine.dir/depend -make -f apps/CMakeFiles/average_images.dir/build.make apps/CMakeFiles/average_images.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/average_affine.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/average_images.dir/DependInfo.cmake --color= make -f apps/CMakeFiles/average_labels.dir/build.make apps/CMakeFiles/average_labels.dir/depend make -f apps/CMakeFiles/concat_affine.dir/build.make apps/CMakeFiles/concat_affine.dir/depend -make -f apps/CMakeFiles/convertx.dir/build.make apps/CMakeFiles/convertx.dir/depend -make -f apps/CMakeFiles/convert_warp.dir/build.make apps/CMakeFiles/convert_warp.dir/depend +make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/average_images.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg 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"Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/convertx.dir/DependInfo.cmake --color= +make -f apps/CMakeFiles/convert_warp.dir/build.make apps/CMakeFiles/convert_warp.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/convert_warp.dir/DependInfo.cmake --color= -make -f apps/CMakeFiles/dof2mat.dir/build.make apps/CMakeFiles/dof2mat.dir/depend +make -f apps/CMakeFiles/destripe.dir/build.make apps/CMakeFiles/destripe.dir/depend +make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' +make -f apps/CMakeFiles/avg_adm.dir/build.make apps/CMakeFiles/avg_adm.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/destripe.dir/DependInfo.cmake --color= -make -f apps/CMakeFiles/dwi_mask_bad_slices.dir/build.make apps/CMakeFiles/dwi_mask_bad_slices.dir/depend -make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps 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'/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/epiunwarp.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -make -f apps/CMakeFiles/avg_adm.dir/build.make apps/CMakeFiles/avg_adm.dir/build make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -make -f apps/CMakeFiles/describe.dir/build.make apps/CMakeFiles/describe.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/dof2mat.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' +make -f apps/CMakeFiles/describe.dir/build.make apps/CMakeFiles/describe.dir/build make -f apps/CMakeFiles/groupwise_init.dir/build.make apps/CMakeFiles/groupwise_init.dir/build -make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/groupwise_affine.dir/build.make apps/CMakeFiles/groupwise_affine.dir/build -make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/groupwise_warp.dir/build.make apps/CMakeFiles/groupwise_warp.dir/build -make -f apps/CMakeFiles/average_affine.dir/build.make apps/CMakeFiles/average_affine.dir/build -make -f apps/CMakeFiles/average_images.dir/build.make apps/CMakeFiles/average_images.dir/build -make -f apps/CMakeFiles/concat_affine.dir/build.make apps/CMakeFiles/concat_affine.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -make -f apps/CMakeFiles/convertx.dir/build.make apps/CMakeFiles/convertx.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' +make -f apps/CMakeFiles/asegment.dir/build.make apps/CMakeFiles/asegment.dir/build make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[ 67%] Building CXX object apps/CMakeFiles/asegment.dir/asegment.cxx.o -make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/asegment.dir/asegment.cxx.o -MF CMakeFiles/asegment.dir/asegment.cxx.o.d -o CMakeFiles/asegment.dir/asegment.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/asegment.cxx -make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' +make -f apps/CMakeFiles/average_affine.dir/build.make apps/CMakeFiles/average_affine.dir/build +make -f apps/CMakeFiles/average_images.dir/build.make apps/CMakeFiles/average_images.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/average_labels.dir/build.make apps/CMakeFiles/average_labels.dir/build -make -f apps/CMakeFiles/destripe.dir/build.make apps/CMakeFiles/destripe.dir/build -make -f apps/CMakeFiles/dof2mat.dir/build.make apps/CMakeFiles/dof2mat.dir/build -[ 67%] Building CXX object apps/CMakeFiles/avg_adm.dir/avg_adm.cxx.o make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' +make -f apps/CMakeFiles/concat_affine.dir/build.make apps/CMakeFiles/concat_affine.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' +[ 67%] Building CXX object apps/CMakeFiles/avg_adm.dir/avg_adm.cxx.o make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' +[ 67%] Building CXX object apps/CMakeFiles/describe.dir/describe.cxx.o +[ 68%] Building CXX object apps/CMakeFiles/groupwise_init.dir/groupwise_init.cxx.o +make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' +make -f apps/CMakeFiles/convertx.dir/build.make apps/CMakeFiles/convertx.dir/build cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/avg_adm.dir/avg_adm.cxx.o -MF CMakeFiles/avg_adm.dir/avg_adm.cxx.o.d -o CMakeFiles/avg_adm.dir/avg_adm.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/avg_adm.cxx make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[ 68%] Building CXX object apps/CMakeFiles/groupwise_init.dir/groupwise_init.cxx.o -make -f apps/CMakeFiles/convert_warp.dir/build.make apps/CMakeFiles/convert_warp.dir/build [ 68%] Building CXX object apps/CMakeFiles/groupwise_affine.dir/groupwise_affine.cxx.o [ 68%] Building CXX object apps/CMakeFiles/groupwise_warp.dir/groupwise_warp.cxx.o -[ 68%] Building CXX object apps/CMakeFiles/average_images.dir/average_images.cxx.o -[ 69%] Building CXX object apps/CMakeFiles/average_affine.dir/average_affine.cxx.o -[ 69%] Building CXX object apps/CMakeFiles/describe.dir/describe.cxx.o -make -f apps/CMakeFiles/dwi_mask_bad_slices.dir/build.make apps/CMakeFiles/dwi_mask_bad_slices.dir/build -make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/groupwise_affine.dir/groupwise_affine.cxx.o -MF CMakeFiles/groupwise_affine.dir/groupwise_affine.cxx.o.d -o CMakeFiles/groupwise_affine.dir/groupwise_affine.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/groupwise_affine.cxx +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/describe.dir/describe.cxx.o -MF CMakeFiles/describe.dir/describe.cxx.o.d -o CMakeFiles/describe.dir/describe.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/describe.cxx +make -f apps/CMakeFiles/convert_warp.dir/build.make apps/CMakeFiles/convert_warp.dir/build +make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/groupwise_init.dir/groupwise_init.cxx.o -MF CMakeFiles/groupwise_init.dir/groupwise_init.cxx.o.d -o CMakeFiles/groupwise_init.dir/groupwise_init.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/groupwise_init.cxx +[ 68%] Building CXX object apps/CMakeFiles/asegment.dir/asegment.cxx.o +make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/groupwise_affine.dir/groupwise_affine.cxx.o -MF CMakeFiles/groupwise_affine.dir/groupwise_affine.cxx.o.d -o CMakeFiles/groupwise_affine.dir/groupwise_affine.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/groupwise_affine.cxx cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/groupwise_warp.dir/groupwise_warp.cxx.o -MF CMakeFiles/groupwise_warp.dir/groupwise_warp.cxx.o.d -o CMakeFiles/groupwise_warp.dir/groupwise_warp.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/groupwise_warp.cxx +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/asegment.dir/asegment.cxx.o -MF CMakeFiles/asegment.dir/asegment.cxx.o.d -o CMakeFiles/asegment.dir/asegment.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/asegment.cxx +[ 69%] Building CXX object apps/CMakeFiles/average_affine.dir/average_affine.cxx.o +[ 69%] Building CXX object apps/CMakeFiles/average_images.dir/average_images.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/average_affine.dir/average_affine.cxx.o -MF CMakeFiles/average_affine.dir/average_affine.cxx.o.d -o CMakeFiles/average_affine.dir/average_affine.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/average_affine.cxx +make -f apps/CMakeFiles/destripe.dir/build.make apps/CMakeFiles/destripe.dir/build +make -f apps/CMakeFiles/dof2mat.dir/build.make apps/CMakeFiles/dof2mat.dir/build +make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -make -f apps/CMakeFiles/epiunwarp.dir/build.make apps/CMakeFiles/epiunwarp.dir/build cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/average_images.dir/average_images.cxx.o -MF CMakeFiles/average_images.dir/average_images.cxx.o.d -o CMakeFiles/average_images.dir/average_images.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/average_images.cxx [ 69%] Building CXX object apps/CMakeFiles/convertx.dir/convertx.cxx.o -[ 69%] Building CXX object apps/CMakeFiles/destripe.dir/destripe.cxx.o +[ 69%] Building CXX object apps/CMakeFiles/concat_affine.dir/concat_affine.cxx.o [ 69%] Building CXX object apps/CMakeFiles/average_labels.dir/average_labels.cxx.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/describe.dir/describe.cxx.o -MF CMakeFiles/describe.dir/describe.cxx.o.d -o CMakeFiles/describe.dir/describe.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/describe.cxx cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/convertx.dir/convertx.cxx.o -MF CMakeFiles/convertx.dir/convertx.cxx.o.d -o CMakeFiles/convertx.dir/convertx.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/convertx.cxx -make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/concat_affine.dir/concat_affine.cxx.o -MF CMakeFiles/concat_affine.dir/concat_affine.cxx.o.d -o CMakeFiles/concat_affine.dir/concat_affine.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/concat_affine.cxx +make -f apps/CMakeFiles/dwi_mask_bad_slices.dir/build.make apps/CMakeFiles/dwi_mask_bad_slices.dir/depend cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/average_labels.dir/average_labels.cxx.o -MF CMakeFiles/average_labels.dir/average_labels.cxx.o.d -o CMakeFiles/average_labels.dir/average_labels.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/average_labels.cxx +make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' +[ 69%] Building CXX object apps/CMakeFiles/destripe.dir/destripe.cxx.o +[ 69%] Building CXX object apps/CMakeFiles/convert_warp.dir/convert_warp.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/destripe.dir/destripe.cxx.o -MF CMakeFiles/destripe.dir/destripe.cxx.o.d -o CMakeFiles/destripe.dir/destripe.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/destripe.cxx -[ 69%] Building CXX object apps/CMakeFiles/concat_affine.dir/concat_affine.cxx.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/convert_warp.dir/convert_warp.cxx.o -MF CMakeFiles/convert_warp.dir/convert_warp.cxx.o.d -o CMakeFiles/convert_warp.dir/convert_warp.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/convert_warp.cxx +make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/dwi_mask_bad_slices.dir/DependInfo.cmake --color= [ 69%] Building CXX object apps/CMakeFiles/dof2mat.dir/dof2mat.cxx.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/concat_affine.dir/concat_affine.cxx.o -MF CMakeFiles/concat_affine.dir/concat_affine.cxx.o.d -o CMakeFiles/concat_affine.dir/concat_affine.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/concat_affine.cxx cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/dof2mat.dir/dof2mat.cxx.o -MF CMakeFiles/dof2mat.dir/dof2mat.cxx.o.d -o CMakeFiles/dof2mat.dir/dof2mat.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/dof2mat.cxx -[ 69%] Building CXX object apps/CMakeFiles/convert_warp.dir/convert_warp.cxx.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/convert_warp.dir/convert_warp.cxx.o -MF CMakeFiles/convert_warp.dir/convert_warp.cxx.o.d -o CMakeFiles/convert_warp.dir/convert_warp.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/convert_warp.cxx +make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' +make -f apps/CMakeFiles/dwi_mask_bad_slices.dir/build.make apps/CMakeFiles/dwi_mask_bad_slices.dir/build +make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 69%] Building CXX object apps/CMakeFiles/dwi_mask_bad_slices.dir/dwi_mask_bad_slices.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/dwi_mask_bad_slices.dir/dwi_mask_bad_slices.cxx.o -MF CMakeFiles/dwi_mask_bad_slices.dir/dwi_mask_bad_slices.cxx.o.d -o CMakeFiles/dwi_mask_bad_slices.dir/dwi_mask_bad_slices.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/dwi_mask_bad_slices.cxx -[ 69%] Building CXX object apps/CMakeFiles/epiunwarp.dir/epiunwarp.cxx.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/epiunwarp.dir/epiunwarp.cxx.o -MF CMakeFiles/epiunwarp.dir/epiunwarp.cxx.o.d -o CMakeFiles/epiunwarp.dir/epiunwarp.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/epiunwarp.cxx /build/cmtk-3.3.1p2+dfsg/apps/describe.cxx: In function 'void DescribeImage(const char*)': /build/cmtk-3.3.1p2+dfsg/apps/describe.cxx:88:30: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long long int' [-Wformat=] 88 | fprintf( stdout, "XDIM\t%d\nYDIM\t%d\nZDIM\t%d\n", volume->GetDims()[cmtk::AXIS_X], volume->GetDims()[cmtk::AXIS_Y], volume->GetDims()[cmtk::AXIS_Z] ); @@ -2431,6 +2466,22 @@ /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/dof2mat.dir/dof2mat.cxx.o -o ../bin/dof2mat -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 69%] Built target dof2mat +make -f apps/CMakeFiles/epiunwarp.dir/build.make apps/CMakeFiles/epiunwarp.dir/depend +make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/epiunwarp.dir/DependInfo.cmake --color= +make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' +make -f apps/CMakeFiles/epiunwarp.dir/build.make apps/CMakeFiles/epiunwarp.dir/build +make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' +[ 69%] Building CXX object apps/CMakeFiles/epiunwarp.dir/epiunwarp.cxx.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/epiunwarp.dir/epiunwarp.cxx.o -MF CMakeFiles/epiunwarp.dir/epiunwarp.cxx.o.d -o CMakeFiles/epiunwarp.dir/epiunwarp.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/epiunwarp.cxx +[ 69%] Linking CXX executable ../bin/convert_warp +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/convert_warp.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/convert_warp.dir/convert_warp.cxx.o -o ../bin/convert_warp -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +[ 69%] Linking CXX executable ../bin/asegment +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/asegment.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/asegment.dir/asegment.cxx.o -o ../bin/asegment -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu 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/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/fibxform.dir/DependInfo.cmake --color= @@ -2439,9 +2490,9 @@ make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 70%] Building CXX object apps/CMakeFiles/fibxform.dir/fibxform.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/fibxform.dir/fibxform.cxx.o -MF CMakeFiles/fibxform.dir/fibxform.cxx.o.d -o CMakeFiles/fibxform.dir/fibxform.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/fibxform.cxx -[ 70%] Linking CXX executable ../bin/asegment -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/asegment.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/asegment.dir/asegment.cxx.o -o ../bin/asegment -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +[ 70%] Linking CXX executable ../bin/average_affine +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/average_affine.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/average_affine.dir/average_affine.cxx.o -o ../bin/average_affine -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 70%] Built target asegment make -f apps/CMakeFiles/fib2image.dir/build.make apps/CMakeFiles/fib2image.dir/depend @@ -2452,92 +2503,86 @@ make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 70%] Building CXX object apps/CMakeFiles/fib2image.dir/fib2image.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/fib2image.dir/fib2image.cxx.o -MF CMakeFiles/fib2image.dir/fib2image.cxx.o.d -o CMakeFiles/fib2image.dir/fib2image.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/fib2image.cxx +make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 71%] Linking CXX executable ../bin/average_labels cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/average_labels.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/average_labels.dir/average_labels.cxx.o -o ../bin/average_labels -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[ 71%] Built target average_labels +[ 71%] Built target average_affine make -f apps/CMakeFiles/film.dir/build.make apps/CMakeFiles/film.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/film.dir/DependInfo.cmake --color= -[ 71%] Linking CXX executable ../bin/groupwise_init -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/groupwise_init.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/average_labels.dir/average_labels.cxx.o -o ../bin/average_labels -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu 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-L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -[ 71%] Building CXX object apps/CMakeFiles/film.dir/film.cxx.o +[ 72%] Linking CXX executable ../bin/concat_affine +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/concat_affine.dir/link.txt --verbose=1 +[ 72%] Building CXX object apps/CMakeFiles/film.dir/film.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/film.dir/film.cxx.o -MF CMakeFiles/film.dir/film.cxx.o.d -o CMakeFiles/film.dir/film.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/film.cxx -[ 71%] Linking CXX executable ../bin/average_affine -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/average_affine.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/average_affine.dir/average_affine.cxx.o -o ../bin/average_affine -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -[ 71%] Linking CXX executable ../bin/destripe -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/destripe.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/destripe.dir/destripe.cxx.o -o ../bin/destripe -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/concat_affine.dir/concat_affine.cxx.o -o ../bin/concat_affine -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[ 71%] Linking CXX executable ../bin/convert_warp -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/convert_warp.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/convert_warp.dir/convert_warp.cxx.o -o ../bin/convert_warp -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -[ 71%] Built target groupwise_init +[ 72%] Built target average_labels make -f apps/CMakeFiles/filter.dir/build.make apps/CMakeFiles/filter.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/filter.dir/DependInfo.cmake --color= -[ 72%] Linking CXX executable ../bin/concat_affine make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/concat_affine.dir/link.txt --verbose=1 -[ 72%] Built target average_affine +make -f apps/CMakeFiles/filter.dir/build.make apps/CMakeFiles/filter.dir/build +make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' +[ 72%] Building CXX object apps/CMakeFiles/filter.dir/filter.cxx.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/filter.dir/filter.cxx.o -MF CMakeFiles/filter.dir/filter.cxx.o.d -o CMakeFiles/filter.dir/filter.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/filter.cxx +[ 73%] Linking CXX executable ../bin/describe +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/describe.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/describe.dir/describe.cxx.o -o ../bin/describe -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +[ 73%] Built target concat_affine make -f apps/CMakeFiles/fit_affine_dfield.dir/build.make apps/CMakeFiles/fit_affine_dfield.dir/depend -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/concat_affine.dir/concat_affine.cxx.o -o ../bin/concat_affine -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/fit_affine_dfield.dir/DependInfo.cmake --color= -make -f apps/CMakeFiles/filter.dir/build.make apps/CMakeFiles/filter.dir/build -make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' +[ 73%] Linking CXX executable ../bin/average_images +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/average_images.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/fit_affine_dfield.dir/build.make apps/CMakeFiles/fit_affine_dfield.dir/build +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/average_images.dir/average_images.cxx.o -o ../bin/average_images -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[ 72%] Building CXX object apps/CMakeFiles/filter.dir/filter.cxx.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/filter.dir/filter.cxx.o -MF CMakeFiles/filter.dir/filter.cxx.o.d -o CMakeFiles/filter.dir/filter.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/filter.cxx -[ 73%] Linking CXX executable ../bin/describe -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/describe.dir/link.txt --verbose=1 [ 73%] Building CXX object apps/CMakeFiles/fit_affine_dfield.dir/fit_affine_dfield.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/fit_affine_dfield.dir/fit_affine_dfield.cxx.o -MF CMakeFiles/fit_affine_dfield.dir/fit_affine_dfield.cxx.o.d -o CMakeFiles/fit_affine_dfield.dir/fit_affine_dfield.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/fit_affine_dfield.cxx -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/describe.dir/describe.cxx.o -o ../bin/describe -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[ 73%] Built target destripe +[ 73%] Built target describe make -f apps/CMakeFiles/fit_affine_xform.dir/build.make apps/CMakeFiles/fit_affine_xform.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/fit_affine_xform.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/fit_affine_xform.dir/build.make apps/CMakeFiles/fit_affine_xform.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 73%] Building CXX object apps/CMakeFiles/fit_affine_xform.dir/fit_affine_xform.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/fit_affine_xform.dir/fit_affine_xform.cxx.o -MF CMakeFiles/fit_affine_xform.dir/fit_affine_xform.cxx.o.d -o CMakeFiles/fit_affine_xform.dir/fit_affine_xform.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/fit_affine_xform.cxx -[ 73%] Built target convert_warp -make -f apps/CMakeFiles/fit_affine_xform_landmarks.dir/build.make apps/CMakeFiles/fit_affine_xform_landmarks.dir/depend +[ 73%] Linking CXX executable ../bin/groupwise_init +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/groupwise_init.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/groupwise_init.dir/groupwise_init.cxx.o -o ../bin/groupwise_init -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' +[ 73%] Built target average_images +make -f apps/CMakeFiles/fit_affine_xform_landmarks.dir/build.make apps/CMakeFiles/fit_affine_xform_landmarks.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/fit_affine_xform_landmarks.dir/DependInfo.cmake --color= -[ 73%] Built target concat_affine make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' +make -f apps/CMakeFiles/fit_affine_xform_landmarks.dir/build.make apps/CMakeFiles/fit_affine_xform_landmarks.dir/build +make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' +[ 74%] Building CXX object apps/CMakeFiles/fit_affine_xform_landmarks.dir/fit_affine_xform_landmarks.cxx.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/fit_affine_xform_landmarks.dir/fit_affine_xform_landmarks.cxx.o -MF CMakeFiles/fit_affine_xform_landmarks.dir/fit_affine_xform_landmarks.cxx.o.d -o CMakeFiles/fit_affine_xform_landmarks.dir/fit_affine_xform_landmarks.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/fit_affine_xform_landmarks.cxx +[ 74%] Linking CXX executable ../bin/destripe +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/destripe.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/destripe.dir/destripe.cxx.o -o ../bin/destripe -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' +[ 74%] Built target groupwise_init make -f apps/CMakeFiles/fit_spline_dfield.dir/build.make apps/CMakeFiles/fit_spline_dfield.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/fit_spline_dfield.dir/DependInfo.cmake --color= -make -f apps/CMakeFiles/fit_affine_xform_landmarks.dir/build.make apps/CMakeFiles/fit_affine_xform_landmarks.dir/build -make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[ 73%] Linking CXX executable ../bin/average_images -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/average_images.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/fit_spline_dfield.dir/build.make apps/CMakeFiles/fit_spline_dfield.dir/build -[ 74%] Building CXX object apps/CMakeFiles/fit_affine_xform_landmarks.dir/fit_affine_xform_landmarks.cxx.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/fit_affine_xform_landmarks.dir/fit_affine_xform_landmarks.cxx.o -MF CMakeFiles/fit_affine_xform_landmarks.dir/fit_affine_xform_landmarks.cxx.o.d -o CMakeFiles/fit_affine_xform_landmarks.dir/fit_affine_xform_landmarks.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/fit_affine_xform_landmarks.cxx make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/average_images.dir/average_images.cxx.o -o ../bin/average_images -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so [ 74%] Building CXX object apps/CMakeFiles/fit_spline_dfield.dir/fit_spline_dfield.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/fit_spline_dfield.dir/fit_spline_dfield.cxx.o -MF CMakeFiles/fit_spline_dfield.dir/fit_spline_dfield.cxx.o.d -o CMakeFiles/fit_spline_dfield.dir/fit_spline_dfield.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/fit_spline_dfield.cxx make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[ 74%] Built target describe +[ 74%] Built target destripe make -f apps/CMakeFiles/fit_spline_xform.dir/build.make apps/CMakeFiles/fit_spline_xform.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/fit_spline_xform.dir/DependInfo.cmake --color= @@ -2546,47 +2591,53 @@ make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 74%] Building CXX object apps/CMakeFiles/fit_spline_xform.dir/fit_spline_xform.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/fit_spline_xform.dir/fit_spline_xform.cxx.o -MF CMakeFiles/fit_spline_xform.dir/fit_spline_xform.cxx.o.d -o CMakeFiles/fit_spline_xform.dir/fit_spline_xform.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/fit_spline_xform.cxx -[ 74%] Linking CXX executable ../bin/epiunwarp -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/epiunwarp.dir/link.txt --verbose=1 +[ 74%] Linking CXX executable ../bin/groupwise_warp +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/groupwise_warp.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/groupwise_warp.dir/groupwise_warp.cxx.o -o ../bin/groupwise_warp -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/epiunwarp.dir/epiunwarp.cxx.o -o ../bin/epiunwarp -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -[ 74%] Built target average_images +[ 74%] Built target groupwise_warp make -f apps/CMakeFiles/geomatch.dir/build.make apps/CMakeFiles/geomatch.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/geomatch.dir/DependInfo.cmake --color= +[ 75%] Linking CXX executable ../bin/dwi_mask_bad_slices +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/dwi_mask_bad_slices.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/geomatch.dir/build.make apps/CMakeFiles/geomatch.dir/build +[ 75%] Linking CXX executable ../bin/avg_adm make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[ 75%] Building CXX object apps/CMakeFiles/geomatch.dir/geomatch.cxx.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/avg_adm.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/dwi_mask_bad_slices.dir/dwi_mask_bad_slices.cxx.o -o ../bin/dwi_mask_bad_slices -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +[ 76%] Building CXX object apps/CMakeFiles/geomatch.dir/geomatch.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/geomatch.dir/geomatch.cxx.o -MF CMakeFiles/geomatch.dir/geomatch.cxx.o.d -o CMakeFiles/geomatch.dir/geomatch.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/geomatch.cxx +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/avg_adm.dir/avg_adm.cxx.o -o ../bin/avg_adm -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[ 75%] Built target epiunwarp +make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' +[ 76%] Built target dwi_mask_bad_slices make -f apps/CMakeFiles/glm.dir/build.make apps/CMakeFiles/glm.dir/depend make[3]: Entering directory 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-I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/glm.dir/glm.cxx.o -MF CMakeFiles/glm.dir/glm.cxx.o.d -o CMakeFiles/glm.dir/glm.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/glm.cxx -[ 76%] Linking CXX executable ../bin/dwi_mask_bad_slices -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/dwi_mask_bad_slices.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/dwi_mask_bad_slices.dir/dwi_mask_bad_slices.cxx.o -o ../bin/dwi_mask_bad_slices -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -[ 76%] Linking CXX executable ../bin/avg_adm -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/avg_adm.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/avg_adm.dir/avg_adm.cxx.o -o ../bin/avg_adm -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[ 76%] Built target dwi_mask_bad_slices +[ 76%] Built target avg_adm make -f apps/CMakeFiles/gmm.dir/build.make apps/CMakeFiles/gmm.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/gmm.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' +make -f apps/CMakeFiles/glm.dir/build.make apps/CMakeFiles/glm.dir/build +make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/gmm.dir/build.make apps/CMakeFiles/gmm.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' +[ 76%] Building CXX object apps/CMakeFiles/glm.dir/glm.cxx.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/glm.dir/glm.cxx.o -MF CMakeFiles/glm.dir/glm.cxx.o.d -o CMakeFiles/glm.dir/glm.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/glm.cxx [ 76%] Building CXX object apps/CMakeFiles/gmm.dir/gmm.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/gmm.dir/gmm.cxx.o -MF CMakeFiles/gmm.dir/gmm.cxx.o.d -o CMakeFiles/gmm.dir/gmm.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/gmm.cxx +[ 76%] Linking CXX executable ../bin/convertx +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/convertx.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/convertx.dir/convertx.cxx.o -o ../bin/convertx -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +[ 76%] Linking CXX executable ../bin/fit_affine_dfield +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/fit_affine_dfield.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/fit_affine_dfield.dir/fit_affine_dfield.cxx.o -o ../bin/fit_affine_dfield -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[ 76%] Built target avg_adm +[ 76%] Built target convertx make -f apps/CMakeFiles/gregxform.dir/build.make apps/CMakeFiles/gregxform.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/gregxform.dir/DependInfo.cmake --color= @@ -2595,159 +2646,153 @@ make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 76%] Building CXX object apps/CMakeFiles/gregxform.dir/gregxform.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/gregxform.dir/gregxform.cxx.o -MF CMakeFiles/gregxform.dir/gregxform.cxx.o.d -o CMakeFiles/gregxform.dir/gregxform.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/gregxform.cxx -[ 76%] Linking CXX executable ../bin/fib2image -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/fib2image.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/fib2image.dir/fib2image.cxx.o -o ../bin/fib2image -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -[ 76%] Linking CXX executable ../bin/fit_affine_dfield -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/fit_affine_dfield.dir/link.txt --verbose=1 -[ 76%] Linking CXX executable ../bin/groupwise_warp -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/groupwise_warp.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/fit_affine_dfield.dir/fit_affine_dfield.cxx.o -o ../bin/fit_affine_dfield -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/groupwise_warp.dir/groupwise_warp.cxx.o -o ../bin/groupwise_warp -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[ 76%] Built target fib2image +[ 76%] Built target fit_affine_dfield make -f apps/CMakeFiles/hausdorff.dir/build.make apps/CMakeFiles/hausdorff.dir/depend -[ 76%] Linking CXX executable ../bin/fibxform make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/hausdorff.dir/DependInfo.cmake --color= -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/fibxform.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/hausdorff.dir/build.make apps/CMakeFiles/hausdorff.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/fibxform.dir/fibxform.cxx.o -o ../bin/fibxform -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so [ 76%] Building CXX object apps/CMakeFiles/hausdorff.dir/hausdorff.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/hausdorff.dir/hausdorff.cxx.o -MF CMakeFiles/hausdorff.dir/hausdorff.cxx.o.d -o CMakeFiles/hausdorff.dir/hausdorff.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/hausdorff.cxx +[ 76%] Linking CXX executable ../bin/epiunwarp +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/epiunwarp.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/epiunwarp.dir/epiunwarp.cxx.o -o ../bin/epiunwarp -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +[ 76%] Linking CXX executable ../bin/fit_affine_xform_landmarks +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/fit_affine_xform_landmarks.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/fit_affine_xform_landmarks.dir/fit_affine_xform_landmarks.cxx.o -o ../bin/fit_affine_xform_landmarks -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +[ 76%] Linking CXX executable ../bin/fib2image +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/fib2image.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/fib2image.dir/fib2image.cxx.o -o ../bin/fib2image -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +[ 76%] Linking CXX executable ../bin/fit_affine_xform +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/fit_affine_xform.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/fit_affine_xform.dir/fit_affine_xform.cxx.o -o ../bin/fit_affine_xform -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[ 76%] Built target fit_affine_dfield +[ 76%] Built target epiunwarp make -f apps/CMakeFiles/histogram.dir/build.make apps/CMakeFiles/histogram.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/histogram.dir/DependInfo.cmake --color= -[ 76%] Built target groupwise_warp -make -f apps/CMakeFiles/imagemath.dir/build.make apps/CMakeFiles/imagemath.dir/depend make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/imagemath.dir/DependInfo.cmake --color= make -f apps/CMakeFiles/histogram.dir/build.make apps/CMakeFiles/histogram.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -make -f apps/CMakeFiles/imagemath.dir/build.make apps/CMakeFiles/imagemath.dir/build -make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 76%] Building CXX object apps/CMakeFiles/histogram.dir/histogram.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/histogram.dir/histogram.cxx.o -MF CMakeFiles/histogram.dir/histogram.cxx.o.d -o CMakeFiles/histogram.dir/histogram.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/histogram.cxx +[ 76%] Built target fit_affine_xform_landmarks +make -f apps/CMakeFiles/imagemath.dir/build.make apps/CMakeFiles/imagemath.dir/depend +make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/imagemath.dir/DependInfo.cmake --color= +make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' +make -f apps/CMakeFiles/imagemath.dir/build.make apps/CMakeFiles/imagemath.dir/build +make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 76%] Building CXX object apps/CMakeFiles/imagemath.dir/imagemath.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/imagemath.dir/imagemath.cxx.o -MF CMakeFiles/imagemath.dir/imagemath.cxx.o.d -o CMakeFiles/imagemath.dir/imagemath.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/imagemath.cxx +[ 76%] Linking CXX executable ../bin/fibxform +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/fibxform.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[ 76%] Built target fibxform +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/fibxform.dir/fibxform.cxx.o -o ../bin/fibxform -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +[ 76%] Built target fit_affine_xform make -f apps/CMakeFiles/interleaved_bad_slices.dir/build.make apps/CMakeFiles/interleaved_bad_slices.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/interleaved_bad_slices.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/interleaved_bad_slices.dir/build.make apps/CMakeFiles/interleaved_bad_slices.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[ 77%] Building CXX object apps/CMakeFiles/interleaved_bad_slices.dir/interleaved_bad_slices.cxx.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/interleaved_bad_slices.dir/interleaved_bad_slices.cxx.o -MF CMakeFiles/interleaved_bad_slices.dir/interleaved_bad_slices.cxx.o.d -o CMakeFiles/interleaved_bad_slices.dir/interleaved_bad_slices.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/interleaved_bad_slices.cxx -[ 77%] Linking CXX executable ../bin/groupwise_affine -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/groupwise_affine.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/groupwise_affine.dir/groupwise_affine.cxx.o -o ../bin/groupwise_affine -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -[ 77%] Linking CXX executable ../bin/fit_affine_xform_landmarks -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/fit_affine_xform_landmarks.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/fit_affine_xform_landmarks.dir/fit_affine_xform_landmarks.cxx.o -o ../bin/fit_affine_xform_landmarks -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -/build/cmtk-3.3.1p2+dfsg/apps/gregxform.cxx: In function 'int doMain(int, const char**)': -/build/cmtk-3.3.1p2+dfsg/apps/gregxform.cxx:191:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 191 | fgets( line, 80, infile ); - | ~~~~~^~~~~~~~~~~~~~~~~~~~ -[ 77%] Linking CXX executable ../bin/convertx -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/convertx.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/convertx.dir/convertx.cxx.o -o ../bin/convertx -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[ 77%] Built target fit_affine_xform_landmarks +[ 76%] Built target fib2image make -f apps/CMakeFiles/jidb.dir/build.make apps/CMakeFiles/jidb.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/jidb.dir/DependInfo.cmake --color= +[ 77%] Building CXX object apps/CMakeFiles/interleaved_bad_slices.dir/interleaved_bad_slices.cxx.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/interleaved_bad_slices.dir/interleaved_bad_slices.cxx.o -MF CMakeFiles/interleaved_bad_slices.dir/interleaved_bad_slices.cxx.o.d -o CMakeFiles/interleaved_bad_slices.dir/interleaved_bad_slices.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/interleaved_bad_slices.cxx make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/jidb.dir/build.make apps/CMakeFiles/jidb.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 77%] Building CXX object apps/CMakeFiles/jidb.dir/jidb.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/jidb.dir/jidb.cxx.o -MF CMakeFiles/jidb.dir/jidb.cxx.o.d -o CMakeFiles/jidb.dir/jidb.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/jidb.cxx -[ 77%] Built target groupwise_affine +make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' +[ 77%] Built target fibxform make -f apps/CMakeFiles/levelset.dir/build.make apps/CMakeFiles/levelset.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/levelset.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/levelset.dir/build.make apps/CMakeFiles/levelset.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 77%] Building CXX object apps/CMakeFiles/levelset.dir/levelset.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/levelset.dir/levelset.cxx.o -MF CMakeFiles/levelset.dir/levelset.cxx.o.d -o CMakeFiles/levelset.dir/levelset.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/levelset.cxx -[ 77%] Built target convertx +[ 78%] Linking CXX executable ../bin/filter +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/filter.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/filter.dir/filter.cxx.o -o ../bin/filter -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +/build/cmtk-3.3.1p2+dfsg/apps/gregxform.cxx: In function 'int doMain(int, const char**)': +/build/cmtk-3.3.1p2+dfsg/apps/gregxform.cxx:191:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 191 | fgets( line, 80, infile ); + | ~~~~~^~~~~~~~~~~~~~~~~~~~ +[ 78%] Linking CXX executable ../bin/groupwise_affine +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/groupwise_affine.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/groupwise_affine.dir/groupwise_affine.cxx.o -o ../bin/groupwise_affine -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' +[ 78%] Built target filter make -f apps/CMakeFiles/lsba.dir/build.make apps/CMakeFiles/lsba.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/lsba.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/lsba.dir/build.make apps/CMakeFiles/lsba.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[ 77%] Building CXX object apps/CMakeFiles/lsba.dir/lsba.cxx.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/lsba.dir/lsba.cxx.o -MF CMakeFiles/lsba.dir/lsba.cxx.o.d -o CMakeFiles/lsba.dir/lsba.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/lsba.cxx -[ 78%] Linking CXX executable ../bin/filter -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/filter.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/filter.dir/filter.cxx.o -o ../bin/filter -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[ 78%] Built target filter +[ 78%] Built target groupwise_affine make -f apps/CMakeFiles/lmsba.dir/build.make apps/CMakeFiles/lmsba.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/lmsba.dir/DependInfo.cmake --color= -[ 78%] Linking CXX executable ../bin/geomatch -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/geomatch.dir/link.txt --verbose=1 +[ 78%] Building CXX object apps/CMakeFiles/lsba.dir/lsba.cxx.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/lsba.dir/lsba.cxx.o -MF CMakeFiles/lsba.dir/lsba.cxx.o.d -o CMakeFiles/lsba.dir/lsba.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/lsba.cxx make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/lmsba.dir/build.make apps/CMakeFiles/lmsba.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/geomatch.dir/geomatch.cxx.o -o ../bin/geomatch -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so [ 78%] Building CXX object apps/CMakeFiles/lmsba.dir/lmsba.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/lmsba.dir/lmsba.cxx.o -MF CMakeFiles/lmsba.dir/lmsba.cxx.o.d -o CMakeFiles/lmsba.dir/lmsba.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/lmsba.cxx +[ 78%] Linking CXX executable ../bin/geomatch +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/geomatch.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/geomatch.dir/geomatch.cxx.o -o ../bin/geomatch -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +[ 79%] Linking CXX executable ../bin/hausdorff +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/hausdorff.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/hausdorff.dir/hausdorff.cxx.o -o ../bin/hausdorff -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[ 78%] Built target geomatch +[ 79%] Built target geomatch make -f apps/CMakeFiles/lvote.dir/build.make apps/CMakeFiles/lvote.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/lvote.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/lvote.dir/build.make apps/CMakeFiles/lvote.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[ 79%] Building CXX object apps/CMakeFiles/lvote.dir/lvote.cxx.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/lvote.dir/lvote.cxx.o -MF CMakeFiles/lvote.dir/lvote.cxx.o.d -o CMakeFiles/lvote.dir/lvote.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/lvote.cxx -[ 79%] Linking CXX executable ../bin/fit_affine_xform -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/fit_affine_xform.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/fit_affine_xform.dir/fit_affine_xform.cxx.o -o ../bin/fit_affine_xform -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so [ 79%] Linking CXX executable ../bin/fit_spline_dfield cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/fit_spline_dfield.dir/link.txt --verbose=1 +[ 80%] Building CXX object apps/CMakeFiles/lvote.dir/lvote.cxx.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/lvote.dir/lvote.cxx.o -MF CMakeFiles/lvote.dir/lvote.cxx.o.d -o CMakeFiles/lvote.dir/lvote.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/lvote.cxx /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/fit_spline_dfield.dir/fit_spline_dfield.cxx.o -o ../bin/fit_spline_dfield -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[ 79%] Built target fit_affine_xform +[ 80%] Built target hausdorff make -f apps/CMakeFiles/make_initial_affine.dir/build.make apps/CMakeFiles/make_initial_affine.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/make_initial_affine.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/make_initial_affine.dir/build.make apps/CMakeFiles/make_initial_affine.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[ 79%] Building CXX object apps/CMakeFiles/make_initial_affine.dir/make_initial_affine.cxx.o +[ 80%] Building CXX object apps/CMakeFiles/make_initial_affine.dir/make_initial_affine.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/make_initial_affine.dir/make_initial_affine.cxx.o -MF CMakeFiles/make_initial_affine.dir/make_initial_affine.cxx.o.d -o CMakeFiles/make_initial_affine.dir/make_initial_affine.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/make_initial_affine.cxx -[ 79%] Built target fit_spline_dfield +make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' +[ 80%] Built target fit_spline_dfield make -f apps/CMakeFiles/mat2dof.dir/build.make apps/CMakeFiles/mat2dof.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/mat2dof.dir/DependInfo.cmake --color= +[ 81%] Linking CXX executable ../bin/levelset +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/levelset.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/mat2dof.dir/build.make apps/CMakeFiles/mat2dof.dir/build +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/levelset.dir/levelset.cxx.o -o ../bin/levelset -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[ 79%] Building CXX object apps/CMakeFiles/mat2dof.dir/mat2dof.cxx.o +[ 81%] Building CXX object apps/CMakeFiles/mat2dof.dir/mat2dof.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/mat2dof.dir/mat2dof.cxx.o -MF CMakeFiles/mat2dof.dir/mat2dof.cxx.o.d -o CMakeFiles/mat2dof.dir/mat2dof.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/mat2dof.cxx -[ 80%] Linking CXX executable ../bin/levelset -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/levelset.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/levelset.dir/levelset.cxx.o -o ../bin/levelset -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -[ 81%] Linking CXX executable ../bin/hausdorff -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/hausdorff.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/hausdorff.dir/hausdorff.cxx.o -o ../bin/hausdorff -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 81%] Built target levelset make -f apps/CMakeFiles/mk_adni_phantom.dir/build.make apps/CMakeFiles/mk_adni_phantom.dir/depend @@ -2756,10 +2801,13 @@ make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/mk_adni_phantom.dir/build.make apps/CMakeFiles/mk_adni_phantom.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' +[ 81%] Linking CXX executable ../bin/fit_spline_xform +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/fit_spline_xform.dir/link.txt --verbose=1 [ 82%] Building CXX object apps/CMakeFiles/mk_adni_phantom.dir/mk_adni_phantom.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/mk_adni_phantom.dir/mk_adni_phantom.cxx.o -MF CMakeFiles/mk_adni_phantom.dir/mk_adni_phantom.cxx.o.d -o CMakeFiles/mk_adni_phantom.dir/mk_adni_phantom.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/mk_adni_phantom.cxx +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/fit_spline_xform.dir/fit_spline_xform.cxx.o -o ../bin/fit_spline_xform -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[ 82%] Built target hausdorff +[ 82%] Built target fit_spline_xform make -f apps/CMakeFiles/mk_analyze_hdr.dir/build.make apps/CMakeFiles/mk_analyze_hdr.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/mk_analyze_hdr.dir/DependInfo.cmake --color= @@ -2768,50 +2816,50 @@ make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 82%] Building CXX object apps/CMakeFiles/mk_analyze_hdr.dir/mk_analyze_hdr.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/mk_analyze_hdr.dir/mk_analyze_hdr.cxx.o -MF CMakeFiles/mk_analyze_hdr.dir/mk_analyze_hdr.cxx.o.d -o CMakeFiles/mk_analyze_hdr.dir/mk_analyze_hdr.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/mk_analyze_hdr.cxx -[ 82%] Linking CXX executable ../bin/fit_spline_xform [ 82%] Linking CXX executable ../bin/gregxform -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/fit_spline_xform.dir/link.txt --verbose=1 cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/gregxform.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/fit_spline_xform.dir/fit_spline_xform.cxx.o -o ../bin/fit_spline_xform -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/gregxform.dir/gregxform.cxx.o -o ../bin/gregxform -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +[ 83%] Linking CXX executable ../bin/gmm +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmm.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/gmm.dir/gmm.cxx.o -o ../bin/gmm -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[ 82%] Built target fit_spline_xform +[ 83%] Built target gregxform make -f apps/CMakeFiles/mk_nifti_hdr.dir/build.make apps/CMakeFiles/mk_nifti_hdr.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/mk_nifti_hdr.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/mk_nifti_hdr.dir/build.make apps/CMakeFiles/mk_nifti_hdr.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[ 82%] Building CXX object apps/CMakeFiles/mk_nifti_hdr.dir/mk_nifti_hdr.cxx.o +[ 83%] Building CXX object apps/CMakeFiles/mk_nifti_hdr.dir/mk_nifti_hdr.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/mk_nifti_hdr.dir/mk_nifti_hdr.cxx.o -MF CMakeFiles/mk_nifti_hdr.dir/mk_nifti_hdr.cxx.o.d -o CMakeFiles/mk_nifti_hdr.dir/mk_nifti_hdr.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/mk_nifti_hdr.cxx make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[ 82%] Built target gregxform +[ 83%] Built target gmm make -f apps/CMakeFiles/mk_phantom_3d.dir/build.make apps/CMakeFiles/mk_phantom_3d.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/mk_phantom_3d.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/mk_phantom_3d.dir/build.make apps/CMakeFiles/mk_phantom_3d.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[ 82%] Building CXX object apps/CMakeFiles/mk_phantom_3d.dir/mk_phantom_3d.cxx.o +[ 83%] Building CXX object apps/CMakeFiles/mk_phantom_3d.dir/mk_phantom_3d.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/mk_phantom_3d.dir/mk_phantom_3d.cxx.o -MF CMakeFiles/mk_phantom_3d.dir/mk_phantom_3d.cxx.o.d -o CMakeFiles/mk_phantom_3d.dir/mk_phantom_3d.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/mk_phantom_3d.cxx -[ 82%] Linking CXX executable ../bin/glm +[ 83%] Linking CXX executable ../bin/film +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/film.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic 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../bin/glm -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -[ 83%] Linking CXX executable ../bin/gmm -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmm.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/gmm.dir/gmm.cxx.o -o ../bin/gmm -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[ 83%] Built target glm +[ 83%] Built target film make -f apps/CMakeFiles/mrbias.dir/build.make apps/CMakeFiles/mrbias.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/mrbias.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/mrbias.dir/build.make apps/CMakeFiles/mrbias.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 83%] Building CXX object apps/CMakeFiles/mrbias.dir/mrbias.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd 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/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/overlap.dir/DependInfo.cmake --color= @@ -2820,59 +2868,50 @@ make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 84%] Building CXX object apps/CMakeFiles/overlap.dir/overlap.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/overlap.dir/overlap.cxx.o -MF CMakeFiles/overlap.dir/overlap.cxx.o.d -o CMakeFiles/overlap.dir/overlap.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/overlap.cxx -[ 84%] Linking CXX executable ../bin/interleaved_bad_slices -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/interleaved_bad_slices.dir/link.txt --verbose=1 -[ 84%] Linking CXX executable ../bin/film -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/film.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/interleaved_bad_slices.dir/interleaved_bad_slices.cxx.o -o ../bin/interleaved_bad_slices -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/film.dir/film.cxx.o -o ../bin/film -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -[ 84%] Linking CXX executable ../bin/histogram -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/histogram.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/histogram.dir/histogram.cxx.o -o ../bin/histogram -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -/build/cmtk-3.3.1p2+dfsg/apps/mk_phantom_3d.cxx: In function 'int doMain(int, const char**)': -/build/cmtk-3.3.1p2+dfsg/apps/mk_phantom_3d.cxx:192:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 192 | std::auto_ptr fileformat( new DcmFileFormat ); - | ^~~~~~~~ -In file included from /usr/include/c++/12/memory:76, - from /build/cmtk-3.3.1p2+dfsg/apps/mk_phantom_3d.cxx:46: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ +[ 84%] Linking CXX executable ../bin/lsba +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/lsba.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/lsba.dir/lsba.cxx.o -o ../bin/lsba -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[ 84%] Built target interleaved_bad_slices +[ 84%] Built target lsba make -f apps/CMakeFiles/probe.dir/build.make apps/CMakeFiles/probe.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/probe.dir/DependInfo.cmake --color= +[ 84%] Linking CXX executable ../bin/histogram +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/histogram.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/histogram.dir/histogram.cxx.o -o ../bin/histogram -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/probe.dir/build.make apps/CMakeFiles/probe.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 84%] Building CXX object apps/CMakeFiles/probe.dir/probe.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/probe.dir/probe.cxx.o -MF CMakeFiles/probe.dir/probe.cxx.o.d -o CMakeFiles/probe.dir/probe.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/probe.cxx +[ 84%] Linking CXX executable ../bin/interleaved_bad_slices +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/interleaved_bad_slices.dir/link.txt --verbose=1 +[ 84%] Linking CXX executable ../bin/lvote make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/lvote.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/interleaved_bad_slices.dir/interleaved_bad_slices.cxx.o -o ../bin/interleaved_bad_slices -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/lvote.dir/lvote.cxx.o -o ../bin/lvote -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so [ 84%] Built target histogram make -f apps/CMakeFiles/pxsearch.dir/build.make apps/CMakeFiles/pxsearch.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/pxsearch.dir/DependInfo.cmake --color= -[ 84%] Built target film -make -f apps/CMakeFiles/reformatx.dir/build.make apps/CMakeFiles/reformatx.dir/depend -make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/reformatx.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/pxsearch.dir/build.make apps/CMakeFiles/pxsearch.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' +[ 84%] Building CXX object apps/CMakeFiles/pxsearch.dir/pxsearch.cxx.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/pxsearch.dir/pxsearch.cxx.o -MF CMakeFiles/pxsearch.dir/pxsearch.cxx.o.d -o CMakeFiles/pxsearch.dir/pxsearch.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/pxsearch.cxx +make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' +[ 84%] Built target interleaved_bad_slices +make -f apps/CMakeFiles/reformatx.dir/build.make apps/CMakeFiles/reformatx.dir/depend +make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/reformatx.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/reformatx.dir/build.make apps/CMakeFiles/reformatx.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[ 84%] Building CXX object apps/CMakeFiles/pxsearch.dir/pxsearch.cxx.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/pxsearch.dir/pxsearch.cxx.o -MF CMakeFiles/pxsearch.dir/pxsearch.cxx.o.d -o CMakeFiles/pxsearch.dir/pxsearch.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/pxsearch.cxx [ 85%] Building CXX object apps/CMakeFiles/reformatx.dir/reformatx.cxx.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/reformatx.dir/reformatx.cxx.o -MF CMakeFiles/reformatx.dir/reformatx.cxx.o.d -o CMakeFiles/reformatx.dir/reformatx.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/reformatx.cxx -[ 85%] Linking CXX executable ../bin/lsba -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/lsba.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/lsba.dir/lsba.cxx.o -o ../bin/lsba -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[ 85%] Built target lsba +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/reformatx.dir/reformatx.cxx.o -MF CMakeFiles/reformatx.dir/reformatx.cxx.o.d -o CMakeFiles/reformatx.dir/reformatx.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/reformatx.cxx +[ 85%] Built target lvote make -f apps/CMakeFiles/registration.dir/build.make apps/CMakeFiles/registration.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/registration.dir/DependInfo.cmake --color= @@ -2884,9 +2923,15 @@ /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/lmsba.dir/lmsba.cxx.o -o ../bin/lmsba -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so [ 85%] Building CXX object apps/CMakeFiles/registration.dir/registration.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/registration.dir/registration.cxx.o -MF CMakeFiles/registration.dir/registration.cxx.o.d -o CMakeFiles/registration.dir/registration.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/registration.cxx -[ 85%] Linking CXX executable ../bin/lvote -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/lvote.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/lvote.dir/lvote.cxx.o -o ../bin/lvote -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +/build/cmtk-3.3.1p2+dfsg/apps/mk_phantom_3d.cxx: In function 'int doMain(int, const char**)': +/build/cmtk-3.3.1p2+dfsg/apps/mk_phantom_3d.cxx:192:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 192 | std::auto_ptr fileformat( new DcmFileFormat ); + | ^~~~~~~~ +In file included from /usr/include/c++/12/memory:76, + from /build/cmtk-3.3.1p2+dfsg/apps/mk_phantom_3d.cxx:46: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 85%] Built target lmsba make -f apps/CMakeFiles/registrationx.dir/build.make apps/CMakeFiles/registrationx.dir/depend @@ -2895,13 +2940,16 @@ make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/registrationx.dir/build.make apps/CMakeFiles/registrationx.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' +[ 85%] Building CXX object apps/CMakeFiles/registrationx.dir/registrationx.cxx.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/registrationx.dir/registrationx.cxx.o -MF CMakeFiles/registrationx.dir/registrationx.cxx.o.d -o CMakeFiles/registrationx.dir/registrationx.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/registrationx.cxx [ 85%] Linking CXX executable ../bin/make_initial_affine cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/make_initial_affine.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/make_initial_affine.dir/make_initial_affine.cxx.o -o ../bin/make_initial_affine -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -[ 85%] Building CXX object apps/CMakeFiles/registrationx.dir/registrationx.cxx.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/registrationx.dir/registrationx.cxx.o -MF CMakeFiles/registrationx.dir/registrationx.cxx.o.d -o CMakeFiles/registrationx.dir/registrationx.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/registrationx.cxx +[ 85%] Linking CXX executable ../bin/mk_adni_phantom +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/mk_adni_phantom.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/mk_adni_phantom.dir/mk_adni_phantom.cxx.o -o ../bin/mk_adni_phantom -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[ 85%] Built target lvote +[ 85%] Built target make_initial_affine make -f apps/CMakeFiles/regress.dir/build.make apps/CMakeFiles/regress.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/regress.dir/DependInfo.cmake --color= @@ -2910,38 +2958,32 @@ make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 85%] Building CXX object apps/CMakeFiles/regress.dir/regress.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/regress.dir/regress.cxx.o -MF CMakeFiles/regress.dir/regress.cxx.o.d -o CMakeFiles/regress.dir/regress.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/regress.cxx -[ 85%] Linking CXX executable ../bin/imagemath -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/imagemath.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/imagemath.dir/imagemath.cxx.o -o ../bin/imagemath -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +[ 86%] Linking CXX executable ../bin/mat2dof +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/mat2dof.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/mat2dof.dir/mat2dof.cxx.o -o ../bin/mat2dof -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[ 85%] Built target make_initial_affine +[ 86%] Built target mk_adni_phantom make -f apps/CMakeFiles/reorient.dir/build.make apps/CMakeFiles/reorient.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/reorient.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/reorient.dir/build.make apps/CMakeFiles/reorient.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[ 85%] Building CXX object apps/CMakeFiles/reorient.dir/reorient.cxx.o +[ 86%] Building CXX object apps/CMakeFiles/reorient.dir/reorient.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/reorient.dir/reorient.cxx.o -MF CMakeFiles/reorient.dir/reorient.cxx.o.d -o CMakeFiles/reorient.dir/reorient.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/reorient.cxx -[ 85%] Linking CXX executable ../bin/mk_analyze_hdr -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/mk_analyze_hdr.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/mk_analyze_hdr.dir/mk_analyze_hdr.cxx.o -o ../bin/mk_analyze_hdr -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -[ 86%] Linking CXX executable ../bin/mat2dof -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/mat2dof.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/mat2dof.dir/mat2dof.cxx.o -o ../bin/mat2dof -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -[ 86%] Built target imagemath +[ 86%] Built target mat2dof make -f apps/CMakeFiles/sba.dir/build.make apps/CMakeFiles/sba.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/sba.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/sba.dir/build.make apps/CMakeFiles/sba.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' +[ 86%] Linking CXX executable ../bin/mk_analyze_hdr +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/mk_analyze_hdr.dir/link.txt --verbose=1 [ 87%] Building CXX object apps/CMakeFiles/sba.dir/sba.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/sba.dir/sba.cxx.o -MF CMakeFiles/sba.dir/sba.cxx.o.d -o CMakeFiles/sba.dir/sba.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/sba.cxx -[ 87%] Linking CXX executable ../bin/mk_adni_phantom -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/mk_adni_phantom.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/mk_adni_phantom.dir/mk_adni_phantom.cxx.o -o ../bin/mk_adni_phantom -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/mk_analyze_hdr.dir/mk_analyze_hdr.cxx.o -o ../bin/mk_analyze_hdr -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 87%] Built target mk_analyze_hdr make -f apps/CMakeFiles/sbai.dir/build.make apps/CMakeFiles/sbai.dir/depend @@ -2952,60 +2994,63 @@ make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 87%] Building CXX object apps/CMakeFiles/sbai.dir/sbai.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/sbai.dir/sbai.cxx.o -MF CMakeFiles/sbai.dir/sbai.cxx.o.d -o CMakeFiles/sbai.dir/sbai.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/sbai.cxx +[ 87%] Linking CXX executable ../bin/imagemath +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/imagemath.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/imagemath.dir/imagemath.cxx.o -o ../bin/imagemath -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +[ 87%] Linking CXX executable ../bin/registration +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/registration.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/registration.dir/registration.cxx.o -o ../bin/registration -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +[ 88%] Linking CXX executable ../bin/mk_nifti_hdr +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/mk_nifti_hdr.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[ 87%] Built target mat2dof +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/mk_nifti_hdr.dir/mk_nifti_hdr.cxx.o -o ../bin/mk_nifti_hdr -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +[ 88%] Built target imagemath make -f apps/CMakeFiles/sequence.dir/build.make apps/CMakeFiles/sequence.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/sequence.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/sequence.dir/build.make apps/CMakeFiles/sequence.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[ 87%] Building CXX object apps/CMakeFiles/sequence.dir/sequence.cxx.o +[ 88%] Building CXX object apps/CMakeFiles/sequence.dir/sequence.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/sequence.dir/sequence.cxx.o -MF CMakeFiles/sequence.dir/sequence.cxx.o.d -o CMakeFiles/sequence.dir/sequence.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/sequence.cxx -[ 87%] Built target mk_adni_phantom +make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' +[ 88%] Built target registration make -f apps/CMakeFiles/similarity.dir/build.make apps/CMakeFiles/similarity.dir/depend -[ 88%] Linking CXX executable ../bin/mk_nifti_hdr make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/similarity.dir/DependInfo.cmake --color= -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/mk_nifti_hdr.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/mk_nifti_hdr.dir/mk_nifti_hdr.cxx.o -o ../bin/mk_nifti_hdr -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/similarity.dir/build.make apps/CMakeFiles/similarity.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 88%] Building CXX object apps/CMakeFiles/similarity.dir/similarity.cxx.o +[ 88%] Linking CXX executable ../bin/jidb +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/jidb.dir/link.txt --verbose=1 cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/similarity.dir/similarity.cxx.o -MF CMakeFiles/similarity.dir/similarity.cxx.o.d -o CMakeFiles/similarity.dir/similarity.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/similarity.cxx -make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[ 88%] Built target mk_nifti_hdr +[ 89%] Linking CXX executable ../bin/registrationx +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/registrationx.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/jidb.dir/jidb.cxx.o -o ../bin/jidb -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +[ 89%] Built target mk_nifti_hdr make -f apps/CMakeFiles/split.dir/build.make apps/CMakeFiles/split.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/split.dir/DependInfo.cmake --color= +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/registrationx.dir/registrationx.cxx.o -o ../bin/registrationx -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/split.dir/build.make apps/CMakeFiles/split.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[ 88%] Building CXX object apps/CMakeFiles/split.dir/split.cxx.o +[ 89%] Building CXX object apps/CMakeFiles/split.dir/split.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/split.dir/split.cxx.o -MF CMakeFiles/split.dir/split.cxx.o.d -o CMakeFiles/split.dir/split.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/split.cxx -[ 88%] Linking CXX executable ../bin/registration -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/registration.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/registration.dir/registration.cxx.o -o ../bin/registration -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -[ 88%] Linking CXX executable ../bin/jidb -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/jidb.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/jidb.dir/jidb.cxx.o -o ../bin/jidb -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[ 88%] Built target registration +[ 89%] Built target jidb make -f apps/CMakeFiles/statistics.dir/build.make apps/CMakeFiles/statistics.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/statistics.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/statistics.dir/build.make apps/CMakeFiles/statistics.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[ 89%] Linking CXX executable ../bin/registrationx -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/registrationx.dir/link.txt --verbose=1 [ 90%] Building CXX object apps/CMakeFiles/statistics.dir/statistics.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/statistics.dir/statistics.cxx.o -MF CMakeFiles/statistics.dir/statistics.cxx.o.d -o CMakeFiles/statistics.dir/statistics.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/statistics.cxx -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/registrationx.dir/registrationx.cxx.o -o ../bin/registrationx -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[ 90%] Built target jidb +[ 90%] Built target registrationx make -f apps/CMakeFiles/stream_pixels.dir/build.make apps/CMakeFiles/stream_pixels.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/stream_pixels.dir/DependInfo.cmake --color= @@ -3014,8 +3059,11 @@ make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 90%] Building CXX object apps/CMakeFiles/stream_pixels.dir/stream_pixels.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/stream_pixels.dir/stream_pixels.cxx.o -MF CMakeFiles/stream_pixels.dir/stream_pixels.cxx.o.d -o CMakeFiles/stream_pixels.dir/stream_pixels.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/stream_pixels.cxx +[ 90%] Linking CXX executable ../bin/overlap +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/overlap.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/overlap.dir/overlap.cxx.o -o ../bin/overlap -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[ 90%] Built target registrationx +[ 90%] Built target overlap make -f apps/CMakeFiles/streamxform.dir/build.make apps/CMakeFiles/streamxform.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/streamxform.dir/DependInfo.cmake --color= @@ -3024,24 +3072,24 @@ make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 90%] Building CXX object apps/CMakeFiles/streamxform.dir/streamxform.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/streamxform.dir/streamxform.cxx.o -MF CMakeFiles/streamxform.dir/streamxform.cxx.o.d -o CMakeFiles/streamxform.dir/streamxform.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/streamxform.cxx -[ 90%] Linking CXX executable ../bin/overlap -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/overlap.dir/link.txt --verbose=1 [ 90%] Linking CXX executable ../bin/mk_phantom_3d cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/mk_phantom_3d.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/overlap.dir/overlap.cxx.o -o ../bin/overlap -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/mk_phantom_3d.dir/mk_phantom_3d.cxx.o -o ../bin/mk_phantom_3d -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[ 90%] Built target overlap +[ 90%] Linking CXX executable ../bin/reorient +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/reorient.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/reorient.dir/reorient.cxx.o -o ../bin/reorient -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +[ 90%] Built target mk_phantom_3d make -f apps/CMakeFiles/sympl.dir/build.make apps/CMakeFiles/sympl.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/sympl.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/sympl.dir/build.make apps/CMakeFiles/sympl.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 90%] Building CXX object apps/CMakeFiles/sympl.dir/sympl.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/sympl.dir/sympl.cxx.o -MF CMakeFiles/sympl.dir/sympl.cxx.o.d -o CMakeFiles/sympl.dir/sympl.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/sympl.cxx -[ 90%] Built target mk_phantom_3d +make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' +[ 90%] Built target reorient make -f apps/CMakeFiles/symplx.dir/build.make apps/CMakeFiles/symplx.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/symplx.dir/DependInfo.cmake --color= @@ -3053,9 +3101,6 @@ [ 90%] Linking CXX executable ../bin/pxsearch cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/pxsearch.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/pxsearch.dir/pxsearch.cxx.o -o ../bin/pxsearch -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -[ 90%] Linking CXX executable ../bin/reorient -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/reorient.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/reorient.dir/reorient.cxx.o -o ../bin/reorient -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 90%] Built target pxsearch make -f apps/CMakeFiles/ttest.dir/build.make apps/CMakeFiles/ttest.dir/depend @@ -3066,118 +3111,118 @@ make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 91%] Building CXX object apps/CMakeFiles/ttest.dir/ttest.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/ttest.dir/ttest.cxx.o -MF CMakeFiles/ttest.dir/ttest.cxx.o.d -o CMakeFiles/ttest.dir/ttest.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/ttest.cxx +[ 91%] Linking CXX executable ../bin/split +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/split.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/split.dir/split.cxx.o -o ../bin/split -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +[ 92%] Linking CXX executable ../bin/sequence +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/sequence.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/sequence.dir/sequence.cxx.o -o ../bin/sequence -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +[ 92%] Linking CXX executable ../bin/sba +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/sba.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/sba.dir/sba.cxx.o -o ../bin/sba -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' +[ 92%] Built target sequence make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[ 91%] Built target reorient make -f apps/CMakeFiles/unsplit.dir/build.make apps/CMakeFiles/unsplit.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps 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-ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/unsplit.dir/unsplit.cxx.o -MF CMakeFiles/unsplit.dir/unsplit.cxx.o.d -o CMakeFiles/unsplit.dir/unsplit.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/unsplit.cxx -[ 91%] Linking CXX executable ../bin/probe -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/probe.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/probe.dir/probe.cxx.o -o ../bin/probe -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -[ 91%] Linking CXX executable ../bin/symplx -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/symplx.dir/link.txt --verbose=1 -make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/symplx.dir/symplx.cxx.o -o ../bin/symplx -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -[ 91%] Built target probe +[ 92%] Built target split make -f apps/CMakeFiles/unwarp_image_phantom.dir/build.make apps/CMakeFiles/unwarp_image_phantom.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/unwarp_image_phantom.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' +make -f apps/CMakeFiles/unsplit.dir/build.make apps/CMakeFiles/unsplit.dir/build +make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/unwarp_image_phantom.dir/build.make apps/CMakeFiles/unwarp_image_phantom.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[ 91%] Building CXX object apps/CMakeFiles/unwarp_image_phantom.dir/unwarp_image_phantom.cxx.o +[ 92%] Building CXX object apps/CMakeFiles/unsplit.dir/unsplit.cxx.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/unsplit.dir/unsplit.cxx.o -MF CMakeFiles/unsplit.dir/unsplit.cxx.o.d -o CMakeFiles/unsplit.dir/unsplit.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/unsplit.cxx +[ 92%] Building CXX object apps/CMakeFiles/unwarp_image_phantom.dir/unwarp_image_phantom.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/unwarp_image_phantom.dir/unwarp_image_phantom.cxx.o -MF CMakeFiles/unwarp_image_phantom.dir/unwarp_image_phantom.cxx.o.d -o CMakeFiles/unwarp_image_phantom.dir/unwarp_image_phantom.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/unwarp_image_phantom.cxx -[ 91%] Linking CXX executable ../bin/sba -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/sba.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/sba.dir/sba.cxx.o -o ../bin/sba -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -[ 91%] Linking CXX executable ../bin/mrbias -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/mrbias.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/mrbias.dir/mrbias.cxx.o -o ../bin/mrbias -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[ 91%] Built target symplx +[ 92%] Built target sba make -f apps/CMakeFiles/vol2csv.dir/build.make apps/CMakeFiles/vol2csv.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/vol2csv.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/vol2csv.dir/build.make apps/CMakeFiles/vol2csv.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[ 91%] Building CXX object apps/CMakeFiles/vol2csv.dir/vol2csv.cxx.o +[ 92%] Building CXX object apps/CMakeFiles/vol2csv.dir/vol2csv.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/vol2csv.dir/vol2csv.cxx.o -MF CMakeFiles/vol2csv.dir/vol2csv.cxx.o.d -o CMakeFiles/vol2csv.dir/vol2csv.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/vol2csv.cxx -[ 92%] Linking CXX executable ../bin/sequence -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/sequence.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/sequence.dir/sequence.cxx.o -o ../bin/sequence -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +[ 92%] Linking CXX executable ../bin/sbai +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/sbai.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/sbai.dir/sbai.cxx.o -o ../bin/sbai -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +[ 92%] Linking CXX executable ../bin/regress +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/regress.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/regress.dir/regress.cxx.o -o ../bin/regress -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +[ 92%] Linking CXX executable ../bin/symplx +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/symplx.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[ 92%] Built target mrbias +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/symplx.dir/symplx.cxx.o -o ../bin/symplx -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +[ 92%] Built target sbai make -f apps/CMakeFiles/volume_injection.dir/build.make apps/CMakeFiles/volume_injection.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/volume_injection.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/volume_injection.dir/build.make apps/CMakeFiles/volume_injection.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[ 92%] Built target sequence +[ 92%] Building CXX object apps/CMakeFiles/volume_injection.dir/volume_injection.cxx.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/volume_injection.dir/volume_injection.cxx.o -MF CMakeFiles/volume_injection.dir/volume_injection.cxx.o.d -o CMakeFiles/volume_injection.dir/volume_injection.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/volume_injection.cxx +make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' +[ 92%] Built target regress make -f apps/CMakeFiles/volume_reconstruction.dir/build.make apps/CMakeFiles/volume_reconstruction.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/volume_reconstruction.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[ 92%] Building CXX object apps/CMakeFiles/volume_injection.dir/volume_injection.cxx.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/volume_injection.dir/volume_injection.cxx.o -MF CMakeFiles/volume_injection.dir/volume_injection.cxx.o.d -o CMakeFiles/volume_injection.dir/volume_injection.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/volume_injection.cxx -make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/volume_reconstruction.dir/build.make apps/CMakeFiles/volume_reconstruction.dir/build -[ 92%] Built target sba +make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' +[ 92%] Linking CXX executable ../bin/mrbias +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/mrbias.dir/link.txt --verbose=1 +[ 93%] Building CXX object apps/CMakeFiles/volume_reconstruction.dir/volume_reconstruction.cxx.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/volume_reconstruction.dir/volume_reconstruction.cxx.o -MF CMakeFiles/volume_reconstruction.dir/volume_reconstruction.cxx.o.d -o CMakeFiles/volume_reconstruction.dir/volume_reconstruction.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/volume_reconstruction.cxx +[ 93%] Built target symplx make -f apps/CMakeFiles/vtkxform.dir/build.make apps/CMakeFiles/vtkxform.dir/depend +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/mrbias.dir/mrbias.cxx.o -o ../bin/mrbias -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/vtkxform.dir/DependInfo.cmake --color= -[ 93%] Building CXX object apps/CMakeFiles/volume_reconstruction.dir/volume_reconstruction.cxx.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/volume_reconstruction.dir/volume_reconstruction.cxx.o -MF CMakeFiles/volume_reconstruction.dir/volume_reconstruction.cxx.o.d -o CMakeFiles/volume_reconstruction.dir/volume_reconstruction.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/volume_reconstruction.cxx +[ 93%] Linking CXX executable ../bin/similarity +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/similarity.dir/link.txt --verbose=1 +[ 93%] Linking CXX executable ../bin/probe +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/probe.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/similarity.dir/similarity.cxx.o -o ../bin/similarity -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/vtkxform.dir/build.make apps/CMakeFiles/vtkxform.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/probe.dir/probe.cxx.o -o ../bin/probe -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so [ 93%] Building CXX object apps/CMakeFiles/vtkxform.dir/vtkxform.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/vtkxform.dir/vtkxform.cxx.o -MF CMakeFiles/vtkxform.dir/vtkxform.cxx.o.d -o CMakeFiles/vtkxform.dir/vtkxform.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/vtkxform.cxx -[ 93%] Linking CXX executable ../bin/regress -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/regress.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/regress.dir/regress.cxx.o -o ../bin/regress -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -[ 93%] Linking CXX executable ../bin/similarity -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/similarity.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/similarity.dir/similarity.cxx.o -o ../bin/similarity -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -[ 93%] Linking CXX executable ../bin/sbai -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/sbai.dir/link.txt --verbose=1 -[ 93%] Linking CXX executable ../bin/stream_pixels -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/stream_pixels.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/sbai.dir/sbai.cxx.o -o ../bin/sbai -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/stream_pixels.dir/stream_pixels.cxx.o -o ../bin/stream_pixels -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[ 93%] Built target regress +make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' +[ 93%] Built target similarity make -f apps/CMakeFiles/warp.dir/build.make apps/CMakeFiles/warp.dir/depend +[ 93%] Built target mrbias make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/warp.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -make -f apps/CMakeFiles/warp.dir/build.make apps/CMakeFiles/warp.dir/build -make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[ 93%] Built target similarity make -f apps/CMakeFiles/warpx.dir/build.make apps/CMakeFiles/warpx.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/warpx.dir/DependInfo.cmake --color= -[ 93%] Building CXX object apps/CMakeFiles/warp.dir/warp.cxx.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/warp.dir/warp.cxx.o -MF CMakeFiles/warp.dir/warp.cxx.o.d -o CMakeFiles/warp.dir/warp.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/warp.cxx +make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' +make -f apps/CMakeFiles/warp.dir/build.make apps/CMakeFiles/warp.dir/build +make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/warpx.dir/build.make apps/CMakeFiles/warpx.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[ 93%] Linking CXX executable ../bin/split +[ 93%] Building CXX object apps/CMakeFiles/warp.dir/warp.cxx.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/warp.dir/warp.cxx.o -MF CMakeFiles/warp.dir/warp.cxx.o.d -o CMakeFiles/warp.dir/warp.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/warp.cxx [ 93%] Building CXX object apps/CMakeFiles/warpx.dir/warpx.cxx.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/split.dir/link.txt --verbose=1 +[ 93%] Linking CXX executable ../bin/stream_pixels cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/warpx.dir/warpx.cxx.o -MF CMakeFiles/warpx.dir/warpx.cxx.o.d -o CMakeFiles/warpx.dir/warpx.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/warpx.cxx +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/stream_pixels.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/stream_pixels.dir/stream_pixels.cxx.o -o ../bin/stream_pixels -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/split.dir/split.cxx.o -o ../bin/split -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -[ 93%] Built target sbai +[ 93%] Built target probe make -f apps/CMakeFiles/warp2ps.dir/build.make apps/CMakeFiles/warp2ps.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/warp2ps.dir/DependInfo.cmake --color= @@ -3196,8 +3241,17 @@ make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 94%] Building CXX object apps/CMakeFiles/xform2dfield.dir/xform2dfield.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/xform2dfield.dir/xform2dfield.cxx.o -MF CMakeFiles/xform2dfield.dir/xform2dfield.cxx.o.d -o CMakeFiles/xform2dfield.dir/xform2dfield.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/xform2dfield.cxx +[ 94%] Linking CXX executable ../bin/statistics +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/statistics.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/statistics.dir/statistics.cxx.o -o ../bin/statistics -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +/build/cmtk-3.3.1p2+dfsg/apps/vtkxform.cxx: In function 'int doMain(int, const char**)': +/build/cmtk-3.3.1p2+dfsg/apps/vtkxform.cxx:190:54: warning: narrowing conversion of 'xyz.cmtk::FixedVector<3, double>::.cmtk::FixedArray<3, double>::operator[](0)' from 'double' to 'float' [-Wnarrowing] + 190 | float xyzFloat[3] = { xyz[0], xyz[1], xyz[2] }; + | ^ +/build/cmtk-3.3.1p2+dfsg/apps/vtkxform.cxx:190:54: warning: narrowing conversion of 'xyz.cmtk::FixedVector<3, double>::.cmtk::FixedArray<3, double>::operator[](1)' from 'double' to 'float' [-Wnarrowing] +/build/cmtk-3.3.1p2+dfsg/apps/vtkxform.cxx:190:54: warning: narrowing conversion of 'xyz.cmtk::FixedVector<3, double>::.cmtk::FixedArray<3, double>::operator[](2)' from 'double' to 'float' [-Wnarrowing] make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[ 94%] Built target split +[ 94%] Built target statistics make -f apps/CMakeFiles/xform2itk.dir/build.make apps/CMakeFiles/xform2itk.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/xform2itk.dir/DependInfo.cmake --color= @@ -3206,69 +3260,69 @@ make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 94%] Building CXX object apps/CMakeFiles/xform2itk.dir/xform2itk.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/xform2itk.dir/xform2itk.cxx.o -MF CMakeFiles/xform2itk.dir/xform2itk.cxx.o.d -o CMakeFiles/xform2itk.dir/xform2itk.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/xform2itk.cxx -/build/cmtk-3.3.1p2+dfsg/apps/vtkxform.cxx: In function 'int doMain(int, const char**)': -/build/cmtk-3.3.1p2+dfsg/apps/vtkxform.cxx:190:54: warning: narrowing conversion of 'xyz.cmtk::FixedVector<3, double>::.cmtk::FixedArray<3, double>::operator[](0)' from 'double' to 'float' [-Wnarrowing] - 190 | float xyzFloat[3] = { xyz[0], xyz[1], xyz[2] }; - | ^ -/build/cmtk-3.3.1p2+dfsg/apps/vtkxform.cxx:190:54: warning: narrowing conversion of 'xyz.cmtk::FixedVector<3, double>::.cmtk::FixedArray<3, double>::operator[](1)' from 'double' to 'float' [-Wnarrowing] -/build/cmtk-3.3.1p2+dfsg/apps/vtkxform.cxx:190:54: warning: narrowing conversion of 'xyz.cmtk::FixedVector<3, double>::.cmtk::FixedArray<3, double>::operator[](2)' from 'double' to 'float' [-Wnarrowing] -[ 95%] Linking CXX executable ../bin/streamxform +[ 95%] Linking CXX executable ../bin/warp +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/warp.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/warp.dir/warp.cxx.o -o ../bin/warp -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +[ 96%] Linking CXX executable ../bin/streamxform cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/streamxform.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/streamxform.dir/streamxform.cxx.o -o ../bin/streamxform -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -[ 95%] Linking CXX executable ../bin/statistics -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/statistics.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/statistics.dir/statistics.cxx.o -o ../bin/statistics -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[ 95%] Built target streamxform +[ 96%] Built target warp make -f apps/CMakeFiles/xform2scalar.dir/build.make apps/CMakeFiles/xform2scalar.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/xform2scalar.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/xform2scalar.dir/build.make apps/CMakeFiles/xform2scalar.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[ 95%] Building CXX object apps/CMakeFiles/xform2scalar.dir/xform2scalar.cxx.o -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/xform2scalar.dir/xform2scalar.cxx.o -MF CMakeFiles/xform2scalar.dir/xform2scalar.cxx.o.d -o CMakeFiles/xform2scalar.dir/xform2scalar.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/xform2scalar.cxx make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[ 95%] Built target statistics +[ 96%] Building CXX object apps/CMakeFiles/xform2scalar.dir/xform2scalar.cxx.o +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/xform2scalar.dir/xform2scalar.cxx.o -MF CMakeFiles/xform2scalar.dir/xform2scalar.cxx.o.d -o CMakeFiles/xform2scalar.dir/xform2scalar.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/xform2scalar.cxx +[ 96%] Built target streamxform make -f apps/CMakeFiles/dbtool.dir/build.make apps/CMakeFiles/dbtool.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/dbtool.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/dbtool.dir/build.make apps/CMakeFiles/dbtool.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[ 96%] Building CXX object apps/CMakeFiles/dbtool.dir/dbtool.cxx.o +[ 97%] Building CXX object apps/CMakeFiles/dbtool.dir/dbtool.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/dbtool.dir/dbtool.cxx.o -MF CMakeFiles/dbtool.dir/dbtool.cxx.o.d -o CMakeFiles/dbtool.dir/dbtool.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/dbtool.cxx -[ 97%] Linking CXX executable ../bin/warp -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/warp.dir/link.txt --verbose=1 -[ 97%] Linking CXX executable ../bin/reformatx -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/reformatx.dir/link.txt --verbose=1 [ 97%] Linking CXX executable ../bin/warpx -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/warp.dir/warp.cxx.o -o ../bin/warp -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/warpx.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong 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-L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +[ 97%] Linking CXX executable ../bin/sympl +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/sympl.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/sympl.dir/sympl.cxx.o -o ../bin/sympl -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[ 97%] Built target warp +[ 97%] Built target warpx make -f apps/CMakeFiles/asegment_sri24.dir/build.make apps/CMakeFiles/asegment_sri24.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/asegment_sri24.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/asegment_sri24.dir/build.make apps/CMakeFiles/asegment_sri24.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 97%] Building CXX object apps/CMakeFiles/asegment_sri24.dir/asegment_sri24.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls 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-D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/reformatx.dir/reformatx.cxx.o -o ../bin/reformatx -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/unsplit.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB 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-fopenmp -rdynamic CMakeFiles/ttest.dir/ttest.cxx.o -o ../bin/ttest -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' +[ 97%] Built target unsplit make -f apps/CMakeFiles/mcwarp.dir/build.make apps/CMakeFiles/mcwarp.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/mcwarp.dir/DependInfo.cmake --color= @@ -3277,61 +3331,64 @@ make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 97%] Building CXX object apps/CMakeFiles/mcwarp.dir/mcwarp.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/mcwarp.dir/mcwarp.cxx.o -MF CMakeFiles/mcwarp.dir/mcwarp.cxx.o.d -o CMakeFiles/mcwarp.dir/mcwarp.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/mcwarp.cxx -[ 97%] Linking CXX executable ../bin/sympl -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/sympl.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/sympl.dir/sympl.cxx.o -o ../bin/sympl -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -[ 97%] Linking CXX executable ../bin/unsplit -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/unsplit.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/unsplit.dir/unsplit.cxx.o -o ../bin/unsplit -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[ 97%] Built target sympl +[ 97%] Built target reformatx make -f apps/CMakeFiles/dcm2image.dir/build.make apps/CMakeFiles/dcm2image.dir/depend +make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/dcm2image.dir/DependInfo.cmake --color= -[ 97%] Built target unsplit +[ 98%] Linking CXX executable ../bin/unwarp_image_phantom +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/unwarp_image_phantom.dir/link.txt --verbose=1 +[ 98%] Built target ttest make -f apps/CMakeFiles/detect_spheres_matched_filter.dir/build.make apps/CMakeFiles/detect_spheres_matched_filter.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/detect_spheres_matched_filter.dir/DependInfo.cmake --color= +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/unwarp_image_phantom.dir/unwarp_image_phantom.cxx.o -o ../bin/unwarp_image_phantom -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/dcm2image.dir/build.make apps/CMakeFiles/dcm2image.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/detect_spheres_matched_filter.dir/build.make apps/CMakeFiles/detect_spheres_matched_filter.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[ 97%] Building CXX object apps/CMakeFiles/dcm2image.dir/dcm2image.cxx.o +[ 98%] Building CXX object apps/CMakeFiles/dcm2image.dir/dcm2image.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/dcm2image.dir/dcm2image.cxx.o -MF CMakeFiles/dcm2image.dir/dcm2image.cxx.o.d -o CMakeFiles/dcm2image.dir/dcm2image.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/dcm2image.cxx -[ 98%] Building CXX object apps/CMakeFiles/detect_spheres_matched_filter.dir/detect_spheres_matched_filter.cxx.o +[ 99%] Building CXX object apps/CMakeFiles/detect_spheres_matched_filter.dir/detect_spheres_matched_filter.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/detect_spheres_matched_filter.dir/detect_spheres_matched_filter.cxx.o -MF CMakeFiles/detect_spheres_matched_filter.dir/detect_spheres_matched_filter.cxx.o.d -o CMakeFiles/detect_spheres_matched_filter.dir/detect_spheres_matched_filter.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/detect_spheres_matched_filter.cxx -[ 98%] Linking CXX executable ../bin/ttest -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/ttest.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/ttest.dir/ttest.cxx.o -o ../bin/ttest -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -[ 98%] Linking CXX executable ../bin/vtkxform +[ 99%] Linking CXX executable ../bin/vtkxform cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/vtkxform.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/vtkxform.dir/vtkxform.cxx.o -o ../bin/vtkxform -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[ 98%] Built target ttest +[ 99%] Built target unwarp_image_phantom make -f apps/CMakeFiles/detect_adni_phantom.dir/build.make apps/CMakeFiles/detect_adni_phantom.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/detect_adni_phantom.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/detect_adni_phantom.dir/build.make apps/CMakeFiles/detect_adni_phantom.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[ 98%] Built target vtkxform -[ 98%] Building CXX object apps/CMakeFiles/detect_adni_phantom.dir/detect_adni_phantom.cxx.o +[ 99%] Building CXX object apps/CMakeFiles/detect_adni_phantom.dir/detect_adni_phantom.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/detect_adni_phantom.dir/detect_adni_phantom.cxx.o -MF CMakeFiles/detect_adni_phantom.dir/detect_adni_phantom.cxx.o.d -o CMakeFiles/detect_adni_phantom.dir/detect_adni_phantom.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/detect_adni_phantom.cxx -[ 98%] Linking CXX executable ../bin/vol2csv -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/vol2csv.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/vol2csv.dir/vol2csv.cxx.o -o ../bin/vol2csv -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[ 98%] Linking CXX executable ../bin/xform2itk +[ 99%] Built target vtkxform +[ 99%] Linking CXX executable ../bin/warp2ps +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/warp2ps.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/warp2ps.dir/warp2ps.cxx.o -o ../bin/warp2ps -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +[ 99%] Linking CXX executable ../bin/volume_injection +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/volume_injection.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/volume_injection.dir/volume_injection.cxx.o -o ../bin/volume_injection -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' +[ 99%] Built target warp2ps +[ 99%] Linking CXX executable ../bin/xform2itk cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/xform2itk.dir/link.txt --verbose=1 -[ 98%] Built target vol2csv +[ 99%] Linking CXX executable ../bin/vol2csv +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/vol2csv.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/xform2itk.dir/xform2itk.cxx.o -o ../bin/xform2itk -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -[ 98%] Linking CXX executable ../bin/dbtool -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/dbtool.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/dbtool.dir/dbtool.cxx.o -o ../bin/dbtool -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/vol2csv.dir/vol2csv.cxx.o -o ../bin/vol2csv -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' +[ 99%] Built target volume_injection +make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' +[ 99%] Built target xform2itk +make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' +[ 99%] Built target vol2csv In file included from /build/cmtk-3.3.1p2+dfsg/apps/dcm2image.cxx:45: /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkImageFileDICOM.h:179:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 179 | std::auto_ptr m_Dataset; @@ -3361,55 +3418,41 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[ 98%] Built target xform2itk -make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[ 98%] Built target dbtool -[ 99%] Linking CXX executable ../bin/unwarp_image_phantom -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/unwarp_image_phantom.dir/link.txt --verbose=1 [ 99%] Linking CXX executable ../bin/xform2dfield cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/xform2dfield.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/unwarp_image_phantom.dir/unwarp_image_phantom.cxx.o -o ../bin/unwarp_image_phantom -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/xform2dfield.dir/xform2dfield.cxx.o -o ../bin/xform2dfield -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -[ 99%] Linking CXX executable ../bin/warp2ps -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/warp2ps.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/warp2ps.dir/warp2ps.cxx.o -o ../bin/warp2ps -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[ 99%] Built target unwarp_image_phantom [ 99%] Built target xform2dfield +[ 99%] Linking CXX executable ../bin/dbtool +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/dbtool.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/dbtool.dir/dbtool.cxx.o -o ../bin/dbtool -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[ 99%] Built target warp2ps -[ 99%] Linking CXX executable ../bin/volume_injection -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/volume_injection.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/volume_injection.dir/volume_injection.cxx.o -o ../bin/volume_injection -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so +[ 99%] Built target dbtool [100%] Linking CXX executable ../bin/xform2scalar cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/xform2scalar.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/xform2scalar.dir/xform2scalar.cxx.o -o ../bin/xform2scalar -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[100%] Built target volume_injection -make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[100%] Built target xform2scalar [100%] Linking CXX executable ../bin/asegment_sri24 cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/asegment_sri24.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/xform2scalar.dir/xform2scalar.cxx.o -o ../bin/xform2scalar -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/asegment_sri24.dir/asegment_sri24.cxx.o -o ../bin/asegment_sri24 -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[100%] Built target asegment_sri24 [100%] Linking CXX executable ../bin/detect_spheres_matched_filter cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/detect_spheres_matched_filter.dir/link.txt --verbose=1 +make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/detect_spheres_matched_filter.dir/detect_spheres_matched_filter.cxx.o -o ../bin/detect_spheres_matched_filter -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' +[100%] Built target asegment_sri24 +[100%] Built target xform2scalar +make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [100%] Built target detect_spheres_matched_filter -[100%] Linking CXX executable ../bin/detect_adni_phantom -cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/detect_adni_phantom.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/detect_adni_phantom.dir/detect_adni_phantom.cxx.o -o ../bin/detect_adni_phantom -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so [100%] Linking CXX executable ../bin/volume_reconstruction cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/volume_reconstruction.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/volume_reconstruction.dir/volume_reconstruction.cxx.o -o ../bin/volume_reconstruction -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so -make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' -[100%] Built target detect_adni_phantom +[100%] Linking CXX executable ../bin/detect_adni_phantom +cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/detect_adni_phantom.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/detect_adni_phantom.dir/detect_adni_phantom.cxx.o -o ../bin/detect_adni_phantom -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [100%] Built target volume_reconstruction +make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' +[100%] Built target detect_adni_phantom [100%] Linking CXX executable ../bin/dcm2image cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/dcm2image.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/dcm2image.dir/dcm2image.cxx.o -o ../bin/dcm2image -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so @@ -3433,10 +3476,10 @@ make[1]: Entering directory '/build/cmtk-3.3.1p2+dfsg' ARGS=--verbose xvfb-run --auto-servernum --server-num=20 \ dh_auto_test - cd obj-x86_64-linux-gnu && make -j16 test ARGS\+=--verbose ARGS\+=-j16 + cd obj-x86_64-linux-gnu && make -j15 test ARGS\+=--verbose ARGS\+=-j15 make[2]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' Running tests... -/usr/bin/ctest --force-new-ctest-process --auto-servernum --server-num '20' -- 'dh_auto_test' --verbose -j16 +/usr/bin/ctest --force-new-ctest-process --auto-servernum --server-num '20' -- 'dh_auto_test' --verbose -j15 UpdateCTestConfiguration from :/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/DartConfiguration.tcl Add coverage exclude regular expressions. Add coverage exclude: .*/Utilities/.* @@ -3450,7 +3493,7 @@ Checking test dependency graph end No tests were found!!! make[2]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' - rm -fr -- /tmp/dh-xdg-rundir-qKvfs_PJ + rm -fr -- /tmp/dh-xdg-rundir-DuvDHede make[1]: Leaving directory '/build/cmtk-3.3.1p2+dfsg' create-stamp debian/debhelper-build-stamp dh_prep @@ -3463,7 +3506,7 @@ make[1]: Entering directory '/build/cmtk-3.3.1p2+dfsg' dh_auto_install install -m0755 -d /build/cmtk-3.3.1p2\+dfsg/debian/cmtk - cd obj-x86_64-linux-gnu && make -j16 install DESTDIR=/build/cmtk-3.3.1p2\+dfsg/debian/cmtk AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-x86_64-linux-gnu && make -j15 install DESTDIR=/build/cmtk-3.3.1p2\+dfsg/debian/cmtk AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/cmtk-3.3.1p2+dfsg -B/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -4116,15 +4159,15 @@ xvfb-run --auto-servernum --server-num=20 \ scripts/gen_manpages \ || dpkg -l xvfb | awk '/xvfb/{print ;}' | grep -q ubuntu -/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/cmtk_functions.sh: 37: .: cannot open /usr/lib/cmtk/bin/cmtk_locking.sh: No such file +/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/cmtk_functions.sh: line 37: /usr/lib/cmtk/bin/cmtk_locking.sh: No such file or directory Manpage for /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/cmtk_functions.sh -- FAILED -/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/correct_dwi_distortion: 34: .: cannot open /usr/lib/cmtk/bin/cmtk_functions.sh: No such file +/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/correct_dwi_distortion: line 34: /usr/lib/cmtk/bin/cmtk_functions.sh: No such file or directory Manpage for /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/correct_dwi_distortion -- FAILED -/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/correct_dwi_distortion_and_motion: 34: .: cannot open /usr/lib/cmtk/bin/cmtk_functions.sh: No such file +/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/correct_dwi_distortion_and_motion: line 34: /usr/lib/cmtk/bin/cmtk_functions.sh: No such file or directory Manpage for /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/correct_dwi_distortion_and_motion -- FAILED -/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/correct_nex_motion: 36: .: cannot open /usr/lib/cmtk/bin/cmtk_functions.sh: No such file +/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/correct_nex_motion: line 36: /usr/lib/cmtk/bin/cmtk_functions.sh: No such file or directory Manpage for /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/correct_nex_motion -- FAILED -/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/groupwise_reformat: 36: .: cannot open /usr/lib/cmtk/bin/cmtk_functions.sh: No such file +/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/groupwise_reformat: line 36: /usr/lib/cmtk/bin/cmtk_functions.sh: No such file or directory Manpage for /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/groupwise_reformat -- FAILED /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/iterative_shape_averaging: line 34: /usr/lib/cmtk/bin/cmtk_functions.sh: No such file or directory Manpage for /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/iterative_shape_averaging -- FAILED @@ -4326,53 +4369,25 @@ man-recode --to-code UTF-8 --suffix .dh-new debian/cmtk/usr/share/man/man1/cmtk-destripe.1 debian/cmtk/usr/share/man/man1/cmtk-detect_adni_phantom.1 debian/cmtk/usr/share/man/man1/cmtk-detect_spheres_matched_filter.1 debian/cmtk/usr/share/man/man1/cmtk-dof2mat.1 debian/cmtk/usr/share/man/man1/cmtk-dwi_mask_bad_slices.1 debian/cmtk/usr/share/man/man1/cmtk-epiunwarp.1 man-recode --to-code UTF-8 --suffix .dh-new debian/cmtk/usr/share/man/man1/cmtk-fib2image.1 debian/cmtk/usr/share/man/man1/cmtk-fibxform.1 debian/cmtk/usr/share/man/man1/cmtk-film.1 debian/cmtk/usr/share/man/man1/cmtk-filter.1 debian/cmtk/usr/share/man/man1/cmtk-fit_affine_dfield.1 debian/cmtk/usr/share/man/man1/cmtk-fit_affine_xform.1 man-recode --to-code UTF-8 --suffix .dh-new debian/cmtk/usr/share/man/man1/cmtk-fit_affine_xform_landmarks.1 debian/cmtk/usr/share/man/man1/cmtk-fit_spline_dfield.1 debian/cmtk/usr/share/man/man1/cmtk-fit_spline_xform.1 debian/cmtk/usr/share/man/man1/cmtk-geomatch.1 debian/cmtk/usr/share/man/man1/cmtk-glm.1 debian/cmtk/usr/share/man/man1/cmtk-gmm.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/cmtk/usr/share/man/man1/cmtk-gregxform.1 debian/cmtk/usr/share/man/man1/cmtk-groupwise_affine.1 debian/cmtk/usr/share/man/man1/cmtk-groupwise_init.1 debian/cmtk/usr/share/man/man1/cmtk-groupwise_warp.1 debian/cmtk/usr/share/man/man1/cmtk-hausdorff.1 debian/cmtk/usr/share/man/man1/cmtk-histogram.1 man-recode --to-code UTF-8 --suffix .dh-new debian/cmtk/usr/share/man/man1/cmtk-imagemath.1 debian/cmtk/usr/share/man/man1/cmtk-interleaved_bad_slices.1 debian/cmtk/usr/share/man/man1/cmtk-iterative_shape_averaging.1 debian/cmtk/usr/share/man/man1/cmtk-jidb.1 debian/cmtk/usr/share/man/man1/cmtk-levelset.1 debian/cmtk/usr/share/man/man1/cmtk-lmsba.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/cmtk/usr/share/man/man1/cmtk-lsba.1 debian/cmtk/usr/share/man/man1/cmtk-lvote.1 debian/cmtk/usr/share/man/man1/cmtk-make_initial_affine.1 debian/cmtk/usr/share/man/man1/cmtk-mat2dof.1 debian/cmtk/usr/share/man/man1/cmtk-mcaffine.1 debian/cmtk/usr/share/man/man1/cmtk-mcwarp.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/cmtk/usr/share/man/man1/cmtk-mk_adni_phantom.1 debian/cmtk/usr/share/man/man1/cmtk-mk_analyze_hdr.1 debian/cmtk/usr/share/man/man1/cmtk-mk_nifti_hdr.1 debian/cmtk/usr/share/man/man1/cmtk-mk_phantom_3d.1 debian/cmtk/usr/share/man/man1/cmtk-mrbias.1 debian/cmtk/usr/share/man/man1/cmtk-overlap.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/cmtk/usr/share/man/man1/cmtk-gregxform.1 debian/cmtk/usr/share/man/man1/cmtk-groupwise_affine.1 debian/cmtk/usr/share/man/man1/cmtk-groupwise_init.1 debian/cmtk/usr/share/man/man1/cmtk-groupwise_warp.1 debian/cmtk/usr/share/man/man1/cmtk-hausdorff.1 debian/cmtk/usr/share/man/man1/cmtk-histogram.1 man-recode --to-code UTF-8 --suffix .dh-new debian/cmtk/usr/share/man/man1/cmtk-probe.1 debian/cmtk/usr/share/man/man1/cmtk-pxsearch.1 debian/cmtk/usr/share/man/man1/cmtk-reformatx.1 debian/cmtk/usr/share/man/man1/cmtk-registration.1 debian/cmtk/usr/share/man/man1/cmtk-registrationx.1 debian/cmtk/usr/share/man/man1/cmtk-regress.1 man-recode --to-code UTF-8 --suffix .dh-new debian/cmtk/usr/share/man/man1/cmtk-reorient.1 debian/cmtk/usr/share/man/man1/cmtk-sba.1 debian/cmtk/usr/share/man/man1/cmtk-sbai.1 debian/cmtk/usr/share/man/man1/cmtk-sequence.1 debian/cmtk/usr/share/man/man1/cmtk-similarity.1 debian/cmtk/usr/share/man/man1/cmtk-split.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/cmtk/usr/share/man/man1/cmtk-warp.1 debian/cmtk/usr/share/man/man1/cmtk-warp2ps.1 debian/cmtk/usr/share/man/man1/cmtk-warpx.1 debian/cmtk/usr/share/man/man1/cmtk-xform2dfield.1 debian/cmtk/usr/share/man/man1/cmtk-xform2itk.1 debian/cmtk/usr/share/man/man1/cmtk-xform2scalar.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/cmtk/usr/share/man/man1/cmtk-mk_adni_phantom.1 debian/cmtk/usr/share/man/man1/cmtk-mk_analyze_hdr.1 debian/cmtk/usr/share/man/man1/cmtk-mk_nifti_hdr.1 debian/cmtk/usr/share/man/man1/cmtk-mk_phantom_3d.1 debian/cmtk/usr/share/man/man1/cmtk-mrbias.1 debian/cmtk/usr/share/man/man1/cmtk-overlap.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/cmtk/usr/share/man/man1/cmtk-lsba.1 debian/cmtk/usr/share/man/man1/cmtk-lvote.1 debian/cmtk/usr/share/man/man1/cmtk-make_initial_affine.1 debian/cmtk/usr/share/man/man1/cmtk-mat2dof.1 debian/cmtk/usr/share/man/man1/cmtk-mcaffine.1 debian/cmtk/usr/share/man/man1/cmtk-mcwarp.1 man-recode --to-code UTF-8 --suffix .dh-new debian/cmtk/usr/share/man/man1/cmtk-statistics.1 debian/cmtk/usr/share/man/man1/cmtk-stream_pixels.1 debian/cmtk/usr/share/man/man1/cmtk-streamxform.1 debian/cmtk/usr/share/man/man1/cmtk-sympl.1 debian/cmtk/usr/share/man/man1/cmtk-symplx.1 debian/cmtk/usr/share/man/man1/cmtk-ttest.1 man-recode --to-code UTF-8 --suffix .dh-new debian/cmtk/usr/share/man/man1/cmtk-unsplit.1 debian/cmtk/usr/share/man/man1/cmtk-unwarp_image_phantom.1 debian/cmtk/usr/share/man/man1/cmtk-vol2csv.1 debian/cmtk/usr/share/man/man1/cmtk-volume_injection.1 debian/cmtk/usr/share/man/man1/cmtk-volume_reconstruction.1 debian/cmtk/usr/share/man/man1/cmtk-vtkxform.1 man-recode --to-code UTF-8 --suffix .dh-new debian/cmtk/usr/share/man/man1/cmtk.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/cmtk/usr/share/man/man1/cmtk-warp.1 debian/cmtk/usr/share/man/man1/cmtk-warp2ps.1 debian/cmtk/usr/share/man/man1/cmtk-warpx.1 debian/cmtk/usr/share/man/man1/cmtk-xform2dfield.1 debian/cmtk/usr/share/man/man1/cmtk-xform2itk.1 debian/cmtk/usr/share/man/man1/cmtk-xform2scalar.1 mv debian/cmtk/usr/share/man/man1/cmtk.1.dh-new debian/cmtk/usr/share/man/man1/cmtk.1 chmod 0644 -- debian/cmtk/usr/share/man/man1/cmtk.1 - mv debian/cmtk/usr/share/man/man1/cmtk-probe.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-probe.1 - mv debian/cmtk/usr/share/man/man1/cmtk-pxsearch.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-pxsearch.1 - mv debian/cmtk/usr/share/man/man1/cmtk-reformatx.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-reformatx.1 - mv debian/cmtk/usr/share/man/man1/cmtk-registration.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-registration.1 - mv debian/cmtk/usr/share/man/man1/cmtk-registrationx.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-registrationx.1 - mv debian/cmtk/usr/share/man/man1/cmtk-regress.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-regress.1 - chmod 0644 -- debian/cmtk/usr/share/man/man1/cmtk-probe.1 debian/cmtk/usr/share/man/man1/cmtk-pxsearch.1 debian/cmtk/usr/share/man/man1/cmtk-reformatx.1 debian/cmtk/usr/share/man/man1/cmtk-registration.1 debian/cmtk/usr/share/man/man1/cmtk-registrationx.1 debian/cmtk/usr/share/man/man1/cmtk-regress.1 - mv debian/cmtk/usr/share/man/man1/cmtk-gregxform.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-gregxform.1 - mv debian/cmtk/usr/share/man/man1/cmtk-groupwise_affine.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-groupwise_affine.1 - mv debian/cmtk/usr/share/man/man1/cmtk-groupwise_init.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-groupwise_init.1 - mv debian/cmtk/usr/share/man/man1/cmtk-groupwise_warp.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-groupwise_warp.1 - mv debian/cmtk/usr/share/man/man1/cmtk-hausdorff.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-hausdorff.1 - mv debian/cmtk/usr/share/man/man1/cmtk-histogram.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-histogram.1 - chmod 0644 -- debian/cmtk/usr/share/man/man1/cmtk-gregxform.1 debian/cmtk/usr/share/man/man1/cmtk-groupwise_affine.1 debian/cmtk/usr/share/man/man1/cmtk-groupwise_init.1 debian/cmtk/usr/share/man/man1/cmtk-groupwise_warp.1 debian/cmtk/usr/share/man/man1/cmtk-hausdorff.1 debian/cmtk/usr/share/man/man1/cmtk-histogram.1 - mv debian/cmtk/usr/share/man/man1/cmtk-asegment.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-asegment.1 - mv debian/cmtk/usr/share/man/man1/cmtk-asegment_sri24.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-asegment_sri24.1 - mv debian/cmtk/usr/share/man/man1/cmtk-average_affine.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-average_affine.1 - mv debian/cmtk/usr/share/man/man1/cmtk-average_images.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-average_images.1 - mv debian/cmtk/usr/share/man/man1/cmtk-average_labels.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-average_labels.1 - mv debian/cmtk/usr/share/man/man1/cmtk-avg_adm.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-avg_adm.1 - chmod 0644 -- debian/cmtk/usr/share/man/man1/cmtk-asegment.1 debian/cmtk/usr/share/man/man1/cmtk-asegment_sri24.1 debian/cmtk/usr/share/man/man1/cmtk-average_affine.1 debian/cmtk/usr/share/man/man1/cmtk-average_images.1 debian/cmtk/usr/share/man/man1/cmtk-average_labels.1 debian/cmtk/usr/share/man/man1/cmtk-avg_adm.1 - mv debian/cmtk/usr/share/man/man1/cmtk-fib2image.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-fib2image.1 - mv debian/cmtk/usr/share/man/man1/cmtk-fibxform.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-fibxform.1 - mv debian/cmtk/usr/share/man/man1/cmtk-film.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-film.1 - mv debian/cmtk/usr/share/man/man1/cmtk-filter.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-filter.1 - mv debian/cmtk/usr/share/man/man1/cmtk-fit_affine_dfield.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-fit_affine_dfield.1 - mv debian/cmtk/usr/share/man/man1/cmtk-fit_affine_xform.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-fit_affine_xform.1 - chmod 0644 -- debian/cmtk/usr/share/man/man1/cmtk-fib2image.1 debian/cmtk/usr/share/man/man1/cmtk-fibxform.1 debian/cmtk/usr/share/man/man1/cmtk-film.1 debian/cmtk/usr/share/man/man1/cmtk-filter.1 debian/cmtk/usr/share/man/man1/cmtk-fit_affine_dfield.1 debian/cmtk/usr/share/man/man1/cmtk-fit_affine_xform.1 - mv debian/cmtk/usr/share/man/man1/cmtk-destripe.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-destripe.1 - mv debian/cmtk/usr/share/man/man1/cmtk-detect_adni_phantom.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-detect_adni_phantom.1 - mv debian/cmtk/usr/share/man/man1/cmtk-detect_spheres_matched_filter.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-detect_spheres_matched_filter.1 - mv debian/cmtk/usr/share/man/man1/cmtk-dof2mat.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-dof2mat.1 - mv debian/cmtk/usr/share/man/man1/cmtk-dwi_mask_bad_slices.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-dwi_mask_bad_slices.1 - mv debian/cmtk/usr/share/man/man1/cmtk-epiunwarp.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-epiunwarp.1 - chmod 0644 -- debian/cmtk/usr/share/man/man1/cmtk-destripe.1 debian/cmtk/usr/share/man/man1/cmtk-detect_adni_phantom.1 debian/cmtk/usr/share/man/man1/cmtk-detect_spheres_matched_filter.1 debian/cmtk/usr/share/man/man1/cmtk-dof2mat.1 debian/cmtk/usr/share/man/man1/cmtk-dwi_mask_bad_slices.1 debian/cmtk/usr/share/man/man1/cmtk-epiunwarp.1 + mv debian/cmtk/usr/share/man/man1/cmtk-reorient.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-reorient.1 + mv debian/cmtk/usr/share/man/man1/cmtk-sba.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-sba.1 + mv debian/cmtk/usr/share/man/man1/cmtk-sbai.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-sbai.1 + mv debian/cmtk/usr/share/man/man1/cmtk-sequence.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-sequence.1 + mv debian/cmtk/usr/share/man/man1/cmtk-similarity.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-similarity.1 + mv debian/cmtk/usr/share/man/man1/cmtk-split.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-split.1 + chmod 0644 -- debian/cmtk/usr/share/man/man1/cmtk-reorient.1 debian/cmtk/usr/share/man/man1/cmtk-sba.1 debian/cmtk/usr/share/man/man1/cmtk-sbai.1 debian/cmtk/usr/share/man/man1/cmtk-sequence.1 debian/cmtk/usr/share/man/man1/cmtk-similarity.1 debian/cmtk/usr/share/man/man1/cmtk-split.1 mv debian/cmtk/usr/share/man/man1/cmtk-imagemath.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-imagemath.1 mv debian/cmtk/usr/share/man/man1/cmtk-interleaved_bad_slices.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-interleaved_bad_slices.1 mv debian/cmtk/usr/share/man/man1/cmtk-iterative_shape_averaging.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-iterative_shape_averaging.1 @@ -4380,6 +4395,20 @@ mv debian/cmtk/usr/share/man/man1/cmtk-levelset.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-levelset.1 mv debian/cmtk/usr/share/man/man1/cmtk-lmsba.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-lmsba.1 chmod 0644 -- debian/cmtk/usr/share/man/man1/cmtk-imagemath.1 debian/cmtk/usr/share/man/man1/cmtk-interleaved_bad_slices.1 debian/cmtk/usr/share/man/man1/cmtk-iterative_shape_averaging.1 debian/cmtk/usr/share/man/man1/cmtk-jidb.1 debian/cmtk/usr/share/man/man1/cmtk-levelset.1 debian/cmtk/usr/share/man/man1/cmtk-lmsba.1 + mv debian/cmtk/usr/share/man/man1/cmtk-destripe.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-destripe.1 + mv debian/cmtk/usr/share/man/man1/cmtk-detect_adni_phantom.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-detect_adni_phantom.1 + mv debian/cmtk/usr/share/man/man1/cmtk-detect_spheres_matched_filter.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-detect_spheres_matched_filter.1 + mv debian/cmtk/usr/share/man/man1/cmtk-dof2mat.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-dof2mat.1 + mv debian/cmtk/usr/share/man/man1/cmtk-dwi_mask_bad_slices.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-dwi_mask_bad_slices.1 + mv debian/cmtk/usr/share/man/man1/cmtk-epiunwarp.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-epiunwarp.1 + chmod 0644 -- debian/cmtk/usr/share/man/man1/cmtk-destripe.1 debian/cmtk/usr/share/man/man1/cmtk-detect_adni_phantom.1 debian/cmtk/usr/share/man/man1/cmtk-detect_spheres_matched_filter.1 debian/cmtk/usr/share/man/man1/cmtk-dof2mat.1 debian/cmtk/usr/share/man/man1/cmtk-dwi_mask_bad_slices.1 debian/cmtk/usr/share/man/man1/cmtk-epiunwarp.1 + mv debian/cmtk/usr/share/man/man1/cmtk-gregxform.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-gregxform.1 + mv debian/cmtk/usr/share/man/man1/cmtk-groupwise_affine.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-groupwise_affine.1 + mv debian/cmtk/usr/share/man/man1/cmtk-groupwise_init.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-groupwise_init.1 + mv debian/cmtk/usr/share/man/man1/cmtk-groupwise_warp.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-groupwise_warp.1 + mv debian/cmtk/usr/share/man/man1/cmtk-hausdorff.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-hausdorff.1 + mv debian/cmtk/usr/share/man/man1/cmtk-histogram.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-histogram.1 + chmod 0644 -- debian/cmtk/usr/share/man/man1/cmtk-gregxform.1 debian/cmtk/usr/share/man/man1/cmtk-groupwise_affine.1 debian/cmtk/usr/share/man/man1/cmtk-groupwise_init.1 debian/cmtk/usr/share/man/man1/cmtk-groupwise_warp.1 debian/cmtk/usr/share/man/man1/cmtk-hausdorff.1 debian/cmtk/usr/share/man/man1/cmtk-histogram.1 mv debian/cmtk/usr/share/man/man1/cmtk-unsplit.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-unsplit.1 mv debian/cmtk/usr/share/man/man1/cmtk-unwarp_image_phantom.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-unwarp_image_phantom.1 mv debian/cmtk/usr/share/man/man1/cmtk-vol2csv.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-vol2csv.1 @@ -4387,20 +4416,13 @@ mv debian/cmtk/usr/share/man/man1/cmtk-volume_reconstruction.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-volume_reconstruction.1 mv debian/cmtk/usr/share/man/man1/cmtk-vtkxform.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-vtkxform.1 chmod 0644 -- debian/cmtk/usr/share/man/man1/cmtk-unsplit.1 debian/cmtk/usr/share/man/man1/cmtk-unwarp_image_phantom.1 debian/cmtk/usr/share/man/man1/cmtk-vol2csv.1 debian/cmtk/usr/share/man/man1/cmtk-volume_injection.1 debian/cmtk/usr/share/man/man1/cmtk-volume_reconstruction.1 debian/cmtk/usr/share/man/man1/cmtk-vtkxform.1 - mv debian/cmtk/usr/share/man/man1/cmtk-reorient.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-reorient.1 - mv debian/cmtk/usr/share/man/man1/cmtk-sba.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-sba.1 - mv debian/cmtk/usr/share/man/man1/cmtk-sbai.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-sbai.1 - mv debian/cmtk/usr/share/man/man1/cmtk-sequence.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-sequence.1 - mv debian/cmtk/usr/share/man/man1/cmtk-similarity.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-similarity.1 - mv debian/cmtk/usr/share/man/man1/cmtk-split.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-split.1 - chmod 0644 -- debian/cmtk/usr/share/man/man1/cmtk-reorient.1 debian/cmtk/usr/share/man/man1/cmtk-sba.1 debian/cmtk/usr/share/man/man1/cmtk-sbai.1 debian/cmtk/usr/share/man/man1/cmtk-sequence.1 debian/cmtk/usr/share/man/man1/cmtk-similarity.1 debian/cmtk/usr/share/man/man1/cmtk-split.1 - mv debian/cmtk/usr/share/man/man1/cmtk-concat_affine.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-concat_affine.1 - mv debian/cmtk/usr/share/man/man1/cmtk-convert_warp.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-convert_warp.1 - mv debian/cmtk/usr/share/man/man1/cmtk-convertx.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-convertx.1 - mv debian/cmtk/usr/share/man/man1/cmtk-dbtool.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-dbtool.1 - mv debian/cmtk/usr/share/man/man1/cmtk-dcm2image.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-dcm2image.1 - mv debian/cmtk/usr/share/man/man1/cmtk-describe.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-describe.1 - chmod 0644 -- debian/cmtk/usr/share/man/man1/cmtk-concat_affine.1 debian/cmtk/usr/share/man/man1/cmtk-convert_warp.1 debian/cmtk/usr/share/man/man1/cmtk-convertx.1 debian/cmtk/usr/share/man/man1/cmtk-dbtool.1 debian/cmtk/usr/share/man/man1/cmtk-dcm2image.1 debian/cmtk/usr/share/man/man1/cmtk-describe.1 + mv debian/cmtk/usr/share/man/man1/cmtk-asegment.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-asegment.1 + mv debian/cmtk/usr/share/man/man1/cmtk-asegment_sri24.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-asegment_sri24.1 + mv debian/cmtk/usr/share/man/man1/cmtk-average_affine.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-average_affine.1 + mv debian/cmtk/usr/share/man/man1/cmtk-average_images.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-average_images.1 + mv debian/cmtk/usr/share/man/man1/cmtk-average_labels.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-average_labels.1 + mv debian/cmtk/usr/share/man/man1/cmtk-avg_adm.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-avg_adm.1 + chmod 0644 -- debian/cmtk/usr/share/man/man1/cmtk-asegment.1 debian/cmtk/usr/share/man/man1/cmtk-asegment_sri24.1 debian/cmtk/usr/share/man/man1/cmtk-average_affine.1 debian/cmtk/usr/share/man/man1/cmtk-average_images.1 debian/cmtk/usr/share/man/man1/cmtk-average_labels.1 debian/cmtk/usr/share/man/man1/cmtk-avg_adm.1 mv debian/cmtk/usr/share/man/man1/cmtk-fit_affine_xform_landmarks.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-fit_affine_xform_landmarks.1 mv debian/cmtk/usr/share/man/man1/cmtk-fit_spline_dfield.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-fit_spline_dfield.1 mv debian/cmtk/usr/share/man/man1/cmtk-fit_spline_xform.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-fit_spline_xform.1 @@ -4415,6 +4437,27 @@ mv debian/cmtk/usr/share/man/man1/cmtk-mcaffine.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-mcaffine.1 mv debian/cmtk/usr/share/man/man1/cmtk-mcwarp.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-mcwarp.1 chmod 0644 -- debian/cmtk/usr/share/man/man1/cmtk-lsba.1 debian/cmtk/usr/share/man/man1/cmtk-lvote.1 debian/cmtk/usr/share/man/man1/cmtk-make_initial_affine.1 debian/cmtk/usr/share/man/man1/cmtk-mat2dof.1 debian/cmtk/usr/share/man/man1/cmtk-mcaffine.1 debian/cmtk/usr/share/man/man1/cmtk-mcwarp.1 + mv debian/cmtk/usr/share/man/man1/cmtk-warp.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-warp.1 + mv debian/cmtk/usr/share/man/man1/cmtk-warp2ps.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-warp2ps.1 + mv debian/cmtk/usr/share/man/man1/cmtk-warpx.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-warpx.1 + mv debian/cmtk/usr/share/man/man1/cmtk-xform2dfield.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-xform2dfield.1 + mv debian/cmtk/usr/share/man/man1/cmtk-xform2itk.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-xform2itk.1 + mv debian/cmtk/usr/share/man/man1/cmtk-xform2scalar.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-xform2scalar.1 + chmod 0644 -- debian/cmtk/usr/share/man/man1/cmtk-warp.1 debian/cmtk/usr/share/man/man1/cmtk-warp2ps.1 debian/cmtk/usr/share/man/man1/cmtk-warpx.1 debian/cmtk/usr/share/man/man1/cmtk-xform2dfield.1 debian/cmtk/usr/share/man/man1/cmtk-xform2itk.1 debian/cmtk/usr/share/man/man1/cmtk-xform2scalar.1 + mv debian/cmtk/usr/share/man/man1/cmtk-fib2image.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-fib2image.1 + mv debian/cmtk/usr/share/man/man1/cmtk-fibxform.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-fibxform.1 + mv debian/cmtk/usr/share/man/man1/cmtk-film.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-film.1 + mv debian/cmtk/usr/share/man/man1/cmtk-filter.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-filter.1 + mv debian/cmtk/usr/share/man/man1/cmtk-fit_affine_dfield.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-fit_affine_dfield.1 + mv debian/cmtk/usr/share/man/man1/cmtk-fit_affine_xform.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-fit_affine_xform.1 + chmod 0644 -- debian/cmtk/usr/share/man/man1/cmtk-fib2image.1 debian/cmtk/usr/share/man/man1/cmtk-fibxform.1 debian/cmtk/usr/share/man/man1/cmtk-film.1 debian/cmtk/usr/share/man/man1/cmtk-filter.1 debian/cmtk/usr/share/man/man1/cmtk-fit_affine_dfield.1 debian/cmtk/usr/share/man/man1/cmtk-fit_affine_xform.1 + mv debian/cmtk/usr/share/man/man1/cmtk-probe.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-probe.1 + mv debian/cmtk/usr/share/man/man1/cmtk-pxsearch.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-pxsearch.1 + mv debian/cmtk/usr/share/man/man1/cmtk-reformatx.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-reformatx.1 + mv debian/cmtk/usr/share/man/man1/cmtk-registration.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-registration.1 + mv debian/cmtk/usr/share/man/man1/cmtk-registrationx.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-registrationx.1 + mv debian/cmtk/usr/share/man/man1/cmtk-regress.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-regress.1 + chmod 0644 -- debian/cmtk/usr/share/man/man1/cmtk-probe.1 debian/cmtk/usr/share/man/man1/cmtk-pxsearch.1 debian/cmtk/usr/share/man/man1/cmtk-reformatx.1 debian/cmtk/usr/share/man/man1/cmtk-registration.1 debian/cmtk/usr/share/man/man1/cmtk-registrationx.1 debian/cmtk/usr/share/man/man1/cmtk-regress.1 mv debian/cmtk/usr/share/man/man1/cmtk-statistics.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-statistics.1 mv debian/cmtk/usr/share/man/man1/cmtk-stream_pixels.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-stream_pixels.1 mv debian/cmtk/usr/share/man/man1/cmtk-streamxform.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-streamxform.1 @@ -4422,6 +4465,13 @@ mv debian/cmtk/usr/share/man/man1/cmtk-symplx.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-symplx.1 mv debian/cmtk/usr/share/man/man1/cmtk-ttest.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-ttest.1 chmod 0644 -- debian/cmtk/usr/share/man/man1/cmtk-statistics.1 debian/cmtk/usr/share/man/man1/cmtk-stream_pixels.1 debian/cmtk/usr/share/man/man1/cmtk-streamxform.1 debian/cmtk/usr/share/man/man1/cmtk-sympl.1 debian/cmtk/usr/share/man/man1/cmtk-symplx.1 debian/cmtk/usr/share/man/man1/cmtk-ttest.1 + mv debian/cmtk/usr/share/man/man1/cmtk-concat_affine.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-concat_affine.1 + mv debian/cmtk/usr/share/man/man1/cmtk-convert_warp.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-convert_warp.1 + mv debian/cmtk/usr/share/man/man1/cmtk-convertx.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-convertx.1 + mv debian/cmtk/usr/share/man/man1/cmtk-dbtool.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-dbtool.1 + mv debian/cmtk/usr/share/man/man1/cmtk-dcm2image.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-dcm2image.1 + mv debian/cmtk/usr/share/man/man1/cmtk-describe.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-describe.1 + chmod 0644 -- debian/cmtk/usr/share/man/man1/cmtk-concat_affine.1 debian/cmtk/usr/share/man/man1/cmtk-convert_warp.1 debian/cmtk/usr/share/man/man1/cmtk-convertx.1 debian/cmtk/usr/share/man/man1/cmtk-dbtool.1 debian/cmtk/usr/share/man/man1/cmtk-dcm2image.1 debian/cmtk/usr/share/man/man1/cmtk-describe.1 mv debian/cmtk/usr/share/man/man1/cmtk-mk_adni_phantom.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-mk_adni_phantom.1 mv debian/cmtk/usr/share/man/man1/cmtk-mk_analyze_hdr.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-mk_analyze_hdr.1 mv debian/cmtk/usr/share/man/man1/cmtk-mk_nifti_hdr.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-mk_nifti_hdr.1 @@ -4429,13 +4479,6 @@ mv debian/cmtk/usr/share/man/man1/cmtk-mrbias.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-mrbias.1 mv debian/cmtk/usr/share/man/man1/cmtk-overlap.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-overlap.1 chmod 0644 -- debian/cmtk/usr/share/man/man1/cmtk-mk_adni_phantom.1 debian/cmtk/usr/share/man/man1/cmtk-mk_analyze_hdr.1 debian/cmtk/usr/share/man/man1/cmtk-mk_nifti_hdr.1 debian/cmtk/usr/share/man/man1/cmtk-mk_phantom_3d.1 debian/cmtk/usr/share/man/man1/cmtk-mrbias.1 debian/cmtk/usr/share/man/man1/cmtk-overlap.1 - mv debian/cmtk/usr/share/man/man1/cmtk-warp.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-warp.1 - mv debian/cmtk/usr/share/man/man1/cmtk-warp2ps.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-warp2ps.1 - mv debian/cmtk/usr/share/man/man1/cmtk-warpx.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-warpx.1 - mv debian/cmtk/usr/share/man/man1/cmtk-xform2dfield.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-xform2dfield.1 - mv debian/cmtk/usr/share/man/man1/cmtk-xform2itk.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-xform2itk.1 - mv debian/cmtk/usr/share/man/man1/cmtk-xform2scalar.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-xform2scalar.1 - chmod 0644 -- debian/cmtk/usr/share/man/man1/cmtk-warp.1 debian/cmtk/usr/share/man/man1/cmtk-warp2ps.1 debian/cmtk/usr/share/man/man1/cmtk-warpx.1 debian/cmtk/usr/share/man/man1/cmtk-xform2dfield.1 debian/cmtk/usr/share/man/man1/cmtk-xform2itk.1 debian/cmtk/usr/share/man/man1/cmtk-xform2scalar.1 make[1]: Leaving directory '/build/cmtk-3.3.1p2+dfsg' dh_perl dh_link @@ -4471,16 +4514,16 @@ chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/16/7b3e9db95df39fa396c4a39ea8e64da003ca5c.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/cmtk/usr/lib/cmtk/libcmtkBase.so objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/16/7b3e9db95df39fa396c4a39ea8e64da003ca5c.debug debian/cmtk/usr/lib/cmtk/libcmtkBase.so - install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/7b - objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/libcmtkSegmentation.so debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/7b/d288da9004cfb3abd49d707f6dd427722d0923.debug - chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/7b/d288da9004cfb3abd49d707f6dd427722d0923.debug - strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/cmtk/usr/lib/cmtk/libcmtkSegmentation.so - objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/7b/d288da9004cfb3abd49d707f6dd427722d0923.debug debian/cmtk/usr/lib/cmtk/libcmtkSegmentation.so install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/5f objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/libcmtkIO.so debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/5f/d7df60b111babe5c692a379e2a91990d64f9b6.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/5f/d7df60b111babe5c692a379e2a91990d64f9b6.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/cmtk/usr/lib/cmtk/libcmtkIO.so objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/5f/d7df60b111babe5c692a379e2a91990d64f9b6.debug debian/cmtk/usr/lib/cmtk/libcmtkIO.so + install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/7b + objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/libcmtkSegmentation.so debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/7b/d288da9004cfb3abd49d707f6dd427722d0923.debug + chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/7b/d288da9004cfb3abd49d707f6dd427722d0923.debug + strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/cmtk/usr/lib/cmtk/libcmtkSegmentation.so + objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/7b/d288da9004cfb3abd49d707f6dd427722d0923.debug debian/cmtk/usr/lib/cmtk/libcmtkSegmentation.so install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/1e objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/libcmtkSystem.so debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/1e/cc95c2de5ff8bad0d83b001d4014b288d2c051.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/1e/cc95c2de5ff8bad0d83b001d4014b288d2c051.debug @@ -4511,101 +4554,96 @@ chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/54/044dd41567b2f0d0502242f748ad42c5d55619.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/xform2dfield objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/54/044dd41567b2f0d0502242f748ad42c5d55619.debug debian/cmtk/usr/lib/cmtk/bin/xform2dfield - install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/e5 - objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/xform2scalar debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/e5/07aa26731fccf8731447ebaaa45f51098abc25.debug - chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/e5/07aa26731fccf8731447ebaaa45f51098abc25.debug - strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/xform2scalar - objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/e5/07aa26731fccf8731447ebaaa45f51098abc25.debug debian/cmtk/usr/lib/cmtk/bin/xform2scalar install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/63 objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/xform2itk debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/63/1682bcda90f5e0408ab8642f433890362698e4.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/63/1682bcda90f5e0408ab8642f433890362698e4.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/xform2itk objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/63/1682bcda90f5e0408ab8642f433890362698e4.debug debian/cmtk/usr/lib/cmtk/bin/xform2itk + install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/e5 + objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/xform2scalar debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/e5/07aa26731fccf8731447ebaaa45f51098abc25.debug + chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/e5/07aa26731fccf8731447ebaaa45f51098abc25.debug + strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/xform2scalar + objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/e5/07aa26731fccf8731447ebaaa45f51098abc25.debug debian/cmtk/usr/lib/cmtk/bin/xform2scalar install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/1b objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/warp2ps debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/1b/cf4d96b938eb81f265fe1a2b34ed4a6ab10aec.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/1b/cf4d96b938eb81f265fe1a2b34ed4a6ab10aec.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/warp2ps objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/1b/cf4d96b938eb81f265fe1a2b34ed4a6ab10aec.debug debian/cmtk/usr/lib/cmtk/bin/warp2ps - install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/63 - objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/vtkxform debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/63/3259265f0869da51b58d53e732fb8ba157fdd0.debug - chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/63/3259265f0869da51b58d53e732fb8ba157fdd0.debug - strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/vtkxform - objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/63/3259265f0869da51b58d53e732fb8ba157fdd0.debug debian/cmtk/usr/lib/cmtk/bin/vtkxform install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/2a objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/volume_reconstruction debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/2a/248a639786b1d913239ad354814e4b4a5cf0f2.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/2a/248a639786b1d913239ad354814e4b4a5cf0f2.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/volume_reconstruction objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/2a/248a639786b1d913239ad354814e4b4a5cf0f2.debug debian/cmtk/usr/lib/cmtk/bin/volume_reconstruction - install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/de - objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/unwarp_image_phantom debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/de/e28893d329f3b0dfed3e4d85964e69c8c77369.debug - chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/de/e28893d329f3b0dfed3e4d85964e69c8c77369.debug - strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/unwarp_image_phantom - objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/de/e28893d329f3b0dfed3e4d85964e69c8c77369.debug debian/cmtk/usr/lib/cmtk/bin/unwarp_image_phantom install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/81 objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/volume_injection debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/81/c24879be5a03dbee8bf70ed8f3910a8046d4f5.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/81/c24879be5a03dbee8bf70ed8f3910a8046d4f5.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/volume_injection objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/81/c24879be5a03dbee8bf70ed8f3910a8046d4f5.debug debian/cmtk/usr/lib/cmtk/bin/volume_injection + install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/63 + objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/vtkxform debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/63/3259265f0869da51b58d53e732fb8ba157fdd0.debug + chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/63/3259265f0869da51b58d53e732fb8ba157fdd0.debug + strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/vtkxform + objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/63/3259265f0869da51b58d53e732fb8ba157fdd0.debug debian/cmtk/usr/lib/cmtk/bin/vtkxform install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/89 objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/warpx debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/89/18ed529e35acf6f4114a8d911fdc18497bcce3.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/89/18ed529e35acf6f4114a8d911fdc18497bcce3.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/warpx objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/89/18ed529e35acf6f4114a8d911fdc18497bcce3.debug debian/cmtk/usr/lib/cmtk/bin/warpx + install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/de + objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/unwarp_image_phantom debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/de/e28893d329f3b0dfed3e4d85964e69c8c77369.debug + chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/de/e28893d329f3b0dfed3e4d85964e69c8c77369.debug + strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/unwarp_image_phantom + objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/de/e28893d329f3b0dfed3e4d85964e69c8c77369.debug debian/cmtk/usr/lib/cmtk/bin/unwarp_image_phantom + install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/b2 + objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/vol2csv debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/b2/cbac7c0fd3520c599cb7d4d6334fff85c6f272.debug + chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/b2/cbac7c0fd3520c599cb7d4d6334fff85c6f272.debug + strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/vol2csv + objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/b2/cbac7c0fd3520c599cb7d4d6334fff85c6f272.debug debian/cmtk/usr/lib/cmtk/bin/vol2csv install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/98 objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/warp debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/98/e1e115f0d20b40ee716b857b708e7b847d7937.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/98/e1e115f0d20b40ee716b857b708e7b847d7937.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/warp objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/98/e1e115f0d20b40ee716b857b708e7b847d7937.debug debian/cmtk/usr/lib/cmtk/bin/warp + install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/33 + objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/ttest debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/33/5c04bfd73b25bc1bbf2cdb532300408d9047ec.debug + chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/33/5c04bfd73b25bc1bbf2cdb532300408d9047ec.debug + strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/ttest + objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/33/5c04bfd73b25bc1bbf2cdb532300408d9047ec.debug debian/cmtk/usr/lib/cmtk/bin/ttest install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/f7 objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/unsplit debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/f7/98c7feac152205bd2bd5c10cc2f5fb912f4e08.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/f7/98c7feac152205bd2bd5c10cc2f5fb912f4e08.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/unsplit objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/f7/98c7feac152205bd2bd5c10cc2f5fb912f4e08.debug debian/cmtk/usr/lib/cmtk/bin/unsplit - install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/b2 - objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/vol2csv debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/b2/cbac7c0fd3520c599cb7d4d6334fff85c6f272.debug - chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/b2/cbac7c0fd3520c599cb7d4d6334fff85c6f272.debug - strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/vol2csv - objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/b2/cbac7c0fd3520c599cb7d4d6334fff85c6f272.debug debian/cmtk/usr/lib/cmtk/bin/vol2csv install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/95 objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/sympl debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/95/100364163c01a93c7499c2134a8d986daa694f.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/95/100364163c01a93c7499c2134a8d986daa694f.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/sympl objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/95/100364163c01a93c7499c2134a8d986daa694f.debug debian/cmtk/usr/lib/cmtk/bin/sympl - install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/33 - objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/ttest debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/33/5c04bfd73b25bc1bbf2cdb532300408d9047ec.debug - chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/33/5c04bfd73b25bc1bbf2cdb532300408d9047ec.debug - strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/ttest - objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/33/5c04bfd73b25bc1bbf2cdb532300408d9047ec.debug debian/cmtk/usr/lib/cmtk/bin/ttest install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/2e objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/streamxform debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/2e/4423a1798ed15b779929b1917c8f926f5f5f59.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/2e/4423a1798ed15b779929b1917c8f926f5f5f59.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/streamxform objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/2e/4423a1798ed15b779929b1917c8f926f5f5f59.debug debian/cmtk/usr/lib/cmtk/bin/streamxform - install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/71 - objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/symplx debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/71/215b0444ed7e0ab8960ee3ada00155e9a39c88.debug - chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/71/215b0444ed7e0ab8960ee3ada00155e9a39c88.debug - strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/symplx - objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/71/215b0444ed7e0ab8960ee3ada00155e9a39c88.debug debian/cmtk/usr/lib/cmtk/bin/symplx install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/3e objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/statistics debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/3e/22a6b49467c7a3dd277bba422902c2a8fe4e26.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/3e/22a6b49467c7a3dd277bba422902c2a8fe4e26.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/statistics objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/3e/22a6b49467c7a3dd277bba422902c2a8fe4e26.debug debian/cmtk/usr/lib/cmtk/bin/statistics - install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/a5 - objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/stream_pixels debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/a5/982338250bb7f8045a33b5f9bf0acd94dfe58f.debug - chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/a5/982338250bb7f8045a33b5f9bf0acd94dfe58f.debug - strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/stream_pixels - objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/a5/982338250bb7f8045a33b5f9bf0acd94dfe58f.debug debian/cmtk/usr/lib/cmtk/bin/stream_pixels install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/10 objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/split debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/10/087860ceded469afedf1eb274a96b46bac739f.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/10/087860ceded469afedf1eb274a96b46bac739f.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/split objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/10/087860ceded469afedf1eb274a96b46bac739f.debug debian/cmtk/usr/lib/cmtk/bin/split - install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/c5 - objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/mcwarp debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/c5/6116169e144b79d30f06a57e19dfc6ebf1a9ce.debug - chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/c5/6116169e144b79d30f06a57e19dfc6ebf1a9ce.debug - strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/mcwarp - objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/c5/6116169e144b79d30f06a57e19dfc6ebf1a9ce.debug debian/cmtk/usr/lib/cmtk/bin/mcwarp + install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/a5 + objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/stream_pixels debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/a5/982338250bb7f8045a33b5f9bf0acd94dfe58f.debug + chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/a5/982338250bb7f8045a33b5f9bf0acd94dfe58f.debug + strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/stream_pixels + objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/a5/982338250bb7f8045a33b5f9bf0acd94dfe58f.debug debian/cmtk/usr/lib/cmtk/bin/stream_pixels + install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/71 + objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/symplx debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/71/215b0444ed7e0ab8960ee3ada00155e9a39c88.debug + chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/71/215b0444ed7e0ab8960ee3ada00155e9a39c88.debug + strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/symplx + objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/71/215b0444ed7e0ab8960ee3ada00155e9a39c88.debug debian/cmtk/usr/lib/cmtk/bin/symplx install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/a8 objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/similarity debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/a8/505c50a7d8676d9293a232d697ffe044de3583.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/a8/505c50a7d8676d9293a232d697ffe044de3583.debug @@ -4616,31 +4654,36 @@ chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/67/4f9b2081fa29bb99184a2b6b1ac6e091b32c8b.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/sbai objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/67/4f9b2081fa29bb99184a2b6b1ac6e091b32c8b.debug debian/cmtk/usr/lib/cmtk/bin/sbai + install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/c5 + objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/mcwarp debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/c5/6116169e144b79d30f06a57e19dfc6ebf1a9ce.debug + chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/c5/6116169e144b79d30f06a57e19dfc6ebf1a9ce.debug + strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/mcwarp + objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/c5/6116169e144b79d30f06a57e19dfc6ebf1a9ce.debug debian/cmtk/usr/lib/cmtk/bin/mcwarp install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/a5 objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/sequence debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/a5/732d04d79698d5cecb6463755de903dff8914d.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/a5/732d04d79698d5cecb6463755de903dff8914d.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/sequence objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/a5/732d04d79698d5cecb6463755de903dff8914d.debug debian/cmtk/usr/lib/cmtk/bin/sequence - install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/41 - objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/reformatx debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/41/75a7cdddcd03d530839d1f061e07e7797bf5ff.debug - chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/41/75a7cdddcd03d530839d1f061e07e7797bf5ff.debug - strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/reformatx - objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/41/75a7cdddcd03d530839d1f061e07e7797bf5ff.debug debian/cmtk/usr/lib/cmtk/bin/reformatx install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/38 objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/sba debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/38/6979b038f5da409fd861f7d1384f0cd4eaf0f1.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/38/6979b038f5da409fd861f7d1384f0cd4eaf0f1.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/sba objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/38/6979b038f5da409fd861f7d1384f0cd4eaf0f1.debug debian/cmtk/usr/lib/cmtk/bin/sba - install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/f6 - objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/reorient debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/f6/4424e34dad2a103e6475270c772305869c1667.debug - chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/f6/4424e34dad2a103e6475270c772305869c1667.debug - strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/reorient - objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/f6/4424e34dad2a103e6475270c772305869c1667.debug debian/cmtk/usr/lib/cmtk/bin/reorient + install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/41 + objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/reformatx debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/41/75a7cdddcd03d530839d1f061e07e7797bf5ff.debug + chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/41/75a7cdddcd03d530839d1f061e07e7797bf5ff.debug + strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/reformatx + objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/41/75a7cdddcd03d530839d1f061e07e7797bf5ff.debug debian/cmtk/usr/lib/cmtk/bin/reformatx install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/8a objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/regress debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/8a/62721f79963fd01268fcefaec259422f931a36.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/8a/62721f79963fd01268fcefaec259422f931a36.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/regress objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/8a/62721f79963fd01268fcefaec259422f931a36.debug debian/cmtk/usr/lib/cmtk/bin/regress + install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/f6 + objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/reorient debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/f6/4424e34dad2a103e6475270c772305869c1667.debug + chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/f6/4424e34dad2a103e6475270c772305869c1667.debug + strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/reorient + objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/f6/4424e34dad2a103e6475270c772305869c1667.debug debian/cmtk/usr/lib/cmtk/bin/reorient install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/a4 objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/probe debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/a4/aac588736cbcfa1409a3819af8294e8a014f3e.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/a4/aac588736cbcfa1409a3819af8294e8a014f3e.debug @@ -4651,36 +4694,41 @@ chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/25/806ad22a851baabdd0272e4eb2e2cc996dc629.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/pxsearch objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/25/806ad22a851baabdd0272e4eb2e2cc996dc629.debug debian/cmtk/usr/lib/cmtk/bin/pxsearch - install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/b8 - objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/mrbias debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/b8/d8096c27e79b3add999f5e0ede035b3c6e51ab.debug - chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/b8/d8096c27e79b3add999f5e0ede035b3c6e51ab.debug - strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/mrbias - objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/b8/d8096c27e79b3add999f5e0ede035b3c6e51ab.debug debian/cmtk/usr/lib/cmtk/bin/mrbias - install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/a8 - objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/registrationx debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/a8/f3118ce219982709a26cb3b71c3eb4d747015e.debug - chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/a8/f3118ce219982709a26cb3b71c3eb4d747015e.debug - strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/registrationx - objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/a8/f3118ce219982709a26cb3b71c3eb4d747015e.debug debian/cmtk/usr/lib/cmtk/bin/registrationx install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/de objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/overlap debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/de/b790697cb7ed495e1dd1cf5980ce75088f2d39.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/de/b790697cb7ed495e1dd1cf5980ce75088f2d39.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/overlap objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/de/b790697cb7ed495e1dd1cf5980ce75088f2d39.debug debian/cmtk/usr/lib/cmtk/bin/overlap + install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/a8 + objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/registrationx debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/a8/f3118ce219982709a26cb3b71c3eb4d747015e.debug + chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/a8/f3118ce219982709a26cb3b71c3eb4d747015e.debug + strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/registrationx + objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/a8/f3118ce219982709a26cb3b71c3eb4d747015e.debug debian/cmtk/usr/lib/cmtk/bin/registrationx + install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/b8 + objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/mrbias debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/b8/d8096c27e79b3add999f5e0ede035b3c6e51ab.debug + chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/b8/d8096c27e79b3add999f5e0ede035b3c6e51ab.debug + strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/mrbias + objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/b8/d8096c27e79b3add999f5e0ede035b3c6e51ab.debug debian/cmtk/usr/lib/cmtk/bin/mrbias install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/ba objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/registration debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/ba/87ae2293b783ea87dae28ad0992edb9ce86f3d.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/ba/87ae2293b783ea87dae28ad0992edb9ce86f3d.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/registration objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/ba/87ae2293b783ea87dae28ad0992edb9ce86f3d.debug debian/cmtk/usr/lib/cmtk/bin/registration - install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/93 - objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/mcaffine debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/93/9858d7d8d440a01c4ddab06f14491cde58f31b.debug - chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/93/9858d7d8d440a01c4ddab06f14491cde58f31b.debug - strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/mcaffine - objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/93/9858d7d8d440a01c4ddab06f14491cde58f31b.debug debian/cmtk/usr/lib/cmtk/bin/mcaffine install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/6b objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/mk_phantom_3d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/6b/c016f30f1adba2106eeb41e17130fd38de61e3.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/6b/c016f30f1adba2106eeb41e17130fd38de61e3.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/mk_phantom_3d objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/6b/c016f30f1adba2106eeb41e17130fd38de61e3.debug debian/cmtk/usr/lib/cmtk/bin/mk_phantom_3d + install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/93 + objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/mcaffine debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/93/9858d7d8d440a01c4ddab06f14491cde58f31b.debug + chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/93/9858d7d8d440a01c4ddab06f14491cde58f31b.debug + strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/mcaffine + objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/93/9858d7d8d440a01c4ddab06f14491cde58f31b.debug debian/cmtk/usr/lib/cmtk/bin/mcaffine + install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/01 + objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/mk_adni_phantom debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/01/23806ad3674c7003cf88b363a50a8d148a4775.debug + chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/01/23806ad3674c7003cf88b363a50a8d148a4775.debug + strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/mk_adni_phantom + objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/01/23806ad3674c7003cf88b363a50a8d148a4775.debug debian/cmtk/usr/lib/cmtk/bin/mk_adni_phantom install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/98 objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/mk_nifti_hdr debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/98/982c99ac9f3ea587fafbb999d842b7253ce41e.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/98/982c99ac9f3ea587fafbb999d842b7253ce41e.debug @@ -4691,47 +4739,42 @@ chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/ac/25824f1950d50d1ec5b5b6f0e52606ee49a536.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/mk_analyze_hdr objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/ac/25824f1950d50d1ec5b5b6f0e52606ee49a536.debug debian/cmtk/usr/lib/cmtk/bin/mk_analyze_hdr - install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/01 - objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/mk_adni_phantom debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/01/23806ad3674c7003cf88b363a50a8d148a4775.debug - chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/01/23806ad3674c7003cf88b363a50a8d148a4775.debug - strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/mk_adni_phantom - objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/01/23806ad3674c7003cf88b363a50a8d148a4775.debug debian/cmtk/usr/lib/cmtk/bin/mk_adni_phantom install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/0d objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/mat2dof debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/0d/94c27f5c2214df9fce19781cbd7c90c274201a.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/0d/94c27f5c2214df9fce19781cbd7c90c274201a.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/mat2dof objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/0d/94c27f5c2214df9fce19781cbd7c90c274201a.debug debian/cmtk/usr/lib/cmtk/bin/mat2dof - install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/4a - objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/jidb debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/4a/327e189528218eceb089f53e46dc06522870b6.debug - chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/4a/327e189528218eceb089f53e46dc06522870b6.debug - strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/jidb - objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/4a/327e189528218eceb089f53e46dc06522870b6.debug debian/cmtk/usr/lib/cmtk/bin/jidb install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/9d objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/make_initial_affine debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/9d/dbf539252ca640e47ee16d90bd318339af3a74.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/9d/dbf539252ca640e47ee16d90bd318339af3a74.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/make_initial_affine objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/9d/dbf539252ca640e47ee16d90bd318339af3a74.debug debian/cmtk/usr/lib/cmtk/bin/make_initial_affine - install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/59 - objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/lvote debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/59/7bf094999152a85263fa235d4c728485837218.debug - chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/59/7bf094999152a85263fa235d4c728485837218.debug - strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/lvote - objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/59/7bf094999152a85263fa235d4c728485837218.debug debian/cmtk/usr/lib/cmtk/bin/lvote - install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/c7 - objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/imagemath debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/c7/49e0e3c562851ca5369213a5664dcb628ec284.debug - chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/c7/49e0e3c562851ca5369213a5664dcb628ec284.debug - strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/imagemath - objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/c7/49e0e3c562851ca5369213a5664dcb628ec284.debug debian/cmtk/usr/lib/cmtk/bin/imagemath install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/7b objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/lsba debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/7b/9bbe171781400136016468af46183efd0c1c67.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/7b/9bbe171781400136016468af46183efd0c1c67.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/lsba objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/7b/9bbe171781400136016468af46183efd0c1c67.debug debian/cmtk/usr/lib/cmtk/bin/lsba + install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/4a + objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/jidb debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/4a/327e189528218eceb089f53e46dc06522870b6.debug + chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/4a/327e189528218eceb089f53e46dc06522870b6.debug + strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/jidb + objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/4a/327e189528218eceb089f53e46dc06522870b6.debug debian/cmtk/usr/lib/cmtk/bin/jidb + install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/59 + objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/lvote debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/59/7bf094999152a85263fa235d4c728485837218.debug + chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/59/7bf094999152a85263fa235d4c728485837218.debug + strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/lvote + objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/59/7bf094999152a85263fa235d4c728485837218.debug debian/cmtk/usr/lib/cmtk/bin/lvote install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/6c objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/lmsba debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/6c/86549c783f4cf93bce9ddb00fb1e240ca1418b.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/6c/86549c783f4cf93bce9ddb00fb1e240ca1418b.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/lmsba objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/6c/86549c783f4cf93bce9ddb00fb1e240ca1418b.debug debian/cmtk/usr/lib/cmtk/bin/lmsba install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/c7 + objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/imagemath debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/c7/49e0e3c562851ca5369213a5664dcb628ec284.debug + chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/c7/49e0e3c562851ca5369213a5664dcb628ec284.debug + strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/imagemath + objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/c7/49e0e3c562851ca5369213a5664dcb628ec284.debug debian/cmtk/usr/lib/cmtk/bin/imagemath + install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/c7 objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/interleaved_bad_slices debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/c7/b7343102a69aef6bacbd1bfccb795580a82b00.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/c7/b7343102a69aef6bacbd1bfccb795580a82b00.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/interleaved_bad_slices @@ -4741,11 +4784,6 @@ chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/56/27723c0bfd91815ca975f26c697fc86a130364.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/groupwise_warp objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/56/27723c0bfd91815ca975f26c697fc86a130364.debug debian/cmtk/usr/lib/cmtk/bin/groupwise_warp - install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/c5 - objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/levelset debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/c5/a93d46b53bcfb6a44d50514c48307ba70946b6.debug - chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/c5/a93d46b53bcfb6a44d50514c48307ba70946b6.debug - strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/levelset - objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/c5/a93d46b53bcfb6a44d50514c48307ba70946b6.debug debian/cmtk/usr/lib/cmtk/bin/levelset install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/76 objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/groupwise_affine debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/76/a7b8338a0e5f309c5059defc7d2119517f7265.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/76/a7b8338a0e5f309c5059defc7d2119517f7265.debug @@ -4756,21 +4794,21 @@ chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/50/b1e257ec34977aec9f2cdb06f4bbe7e0fe3624.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/histogram objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/50/b1e257ec34977aec9f2cdb06f4bbe7e0fe3624.debug debian/cmtk/usr/lib/cmtk/bin/histogram - install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/cd - objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/groupwise_init debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/cd/a10d223a41ce00abba1fa3136f58674ee8073b.debug - chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/cd/a10d223a41ce00abba1fa3136f58674ee8073b.debug - strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/groupwise_init - objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/cd/a10d223a41ce00abba1fa3136f58674ee8073b.debug debian/cmtk/usr/lib/cmtk/bin/groupwise_init + install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/c5 + objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/levelset debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/c5/a93d46b53bcfb6a44d50514c48307ba70946b6.debug + chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/c5/a93d46b53bcfb6a44d50514c48307ba70946b6.debug + strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/levelset + objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/c5/a93d46b53bcfb6a44d50514c48307ba70946b6.debug debian/cmtk/usr/lib/cmtk/bin/levelset install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/62 objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/hausdorff debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/62/587f5b4f5911b953ba395f719b5bb595371f30.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/62/587f5b4f5911b953ba395f719b5bb595371f30.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/hausdorff objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/62/587f5b4f5911b953ba395f719b5bb595371f30.debug debian/cmtk/usr/lib/cmtk/bin/hausdorff - install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/77 - objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/glm debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/77/8bff1a21c6e42f20d8efefcee8e24413620cf0.debug - chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/77/8bff1a21c6e42f20d8efefcee8e24413620cf0.debug - strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/glm - objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/77/8bff1a21c6e42f20d8efefcee8e24413620cf0.debug debian/cmtk/usr/lib/cmtk/bin/glm + install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/cd + objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/groupwise_init debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/cd/a10d223a41ce00abba1fa3136f58674ee8073b.debug + chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/cd/a10d223a41ce00abba1fa3136f58674ee8073b.debug + strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/groupwise_init + objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/cd/a10d223a41ce00abba1fa3136f58674ee8073b.debug debian/cmtk/usr/lib/cmtk/bin/groupwise_init install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/d1 objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/gregxform debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/d1/d633fd595712106525af7fba27a386459f64d6.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/d1/d633fd595712106525af7fba27a386459f64d6.debug @@ -4781,6 +4819,11 @@ chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/88/823da2ab9c98328e77e49dd87e7becd4f33e78.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/gmm objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/88/823da2ab9c98328e77e49dd87e7becd4f33e78.debug debian/cmtk/usr/lib/cmtk/bin/gmm + install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/77 + objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/glm debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/77/8bff1a21c6e42f20d8efefcee8e24413620cf0.debug + chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/77/8bff1a21c6e42f20d8efefcee8e24413620cf0.debug + strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/glm + objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/77/8bff1a21c6e42f20d8efefcee8e24413620cf0.debug debian/cmtk/usr/lib/cmtk/bin/glm install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/e2 objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/fit_spline_xform debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/e2/2a17a6243b1168b5f88b12da7a6d5ea83fbb21.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/e2/2a17a6243b1168b5f88b12da7a6d5ea83fbb21.debug @@ -4791,11 +4834,6 @@ chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/85/a245b773b7bd01bfa9af38efddb06d1c78714f.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/fit_spline_dfield objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/85/a245b773b7bd01bfa9af38efddb06d1c78714f.debug debian/cmtk/usr/lib/cmtk/bin/fit_spline_dfield - install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/18 - objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/film debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/18/aa7961cb5fb628df0b13296a8ae968f6a35cf3.debug - chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/18/aa7961cb5fb628df0b13296a8ae968f6a35cf3.debug - strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/film - objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/18/aa7961cb5fb628df0b13296a8ae968f6a35cf3.debug debian/cmtk/usr/lib/cmtk/bin/film install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/17 objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/geomatch debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/17/c4c9dee429f358299d9238f4437ea960bd1fdf.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/17/c4c9dee429f358299d9238f4437ea960bd1fdf.debug @@ -4811,16 +4849,26 @@ chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/ed/7347cbe7a4aeb0ae88ffe11dacce2750261329.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/fit_affine_xform_landmarks objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/ed/7347cbe7a4aeb0ae88ffe11dacce2750261329.debug debian/cmtk/usr/lib/cmtk/bin/fit_affine_xform_landmarks - install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/73 - objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/epiunwarp debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/73/9bdf97c3c086de54f63089669dbc5ddbddd2b0.debug - chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/73/9bdf97c3c086de54f63089669dbc5ddbddd2b0.debug - strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/epiunwarp - objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/73/9bdf97c3c086de54f63089669dbc5ddbddd2b0.debug debian/cmtk/usr/lib/cmtk/bin/epiunwarp + install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/18 + objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/film debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/18/aa7961cb5fb628df0b13296a8ae968f6a35cf3.debug + chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/18/aa7961cb5fb628df0b13296a8ae968f6a35cf3.debug + strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/film + objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/18/aa7961cb5fb628df0b13296a8ae968f6a35cf3.debug debian/cmtk/usr/lib/cmtk/bin/film install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/94 objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/filter debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/94/190b46da544b3aefaea12c905086a17b8531b1.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/94/190b46da544b3aefaea12c905086a17b8531b1.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/filter objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/94/190b46da544b3aefaea12c905086a17b8531b1.debug debian/cmtk/usr/lib/cmtk/bin/filter + install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/82 + objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/dwi_mask_bad_slices debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/82/e32d88a25444b424d0c4650a8985dc9d82de01.debug + chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/82/e32d88a25444b424d0c4650a8985dc9d82de01.debug + strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/dwi_mask_bad_slices + objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/82/e32d88a25444b424d0c4650a8985dc9d82de01.debug debian/cmtk/usr/lib/cmtk/bin/dwi_mask_bad_slices + install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/73 + objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/epiunwarp debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/73/9bdf97c3c086de54f63089669dbc5ddbddd2b0.debug + chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/73/9bdf97c3c086de54f63089669dbc5ddbddd2b0.debug + strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/epiunwarp + objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/73/9bdf97c3c086de54f63089669dbc5ddbddd2b0.debug debian/cmtk/usr/lib/cmtk/bin/epiunwarp install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/92 objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/fit_affine_dfield debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/92/e3e8afe5155aac22d6d24cdfddd9b7e4b18f34.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/92/e3e8afe5155aac22d6d24cdfddd9b7e4b18f34.debug @@ -4836,21 +4884,26 @@ chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/64/389f6eb7341357d64487d80e06a45d340b9357.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/fib2image objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/64/389f6eb7341357d64487d80e06a45d340b9357.debug debian/cmtk/usr/lib/cmtk/bin/fib2image - install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/82 - objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/dwi_mask_bad_slices debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/82/e32d88a25444b424d0c4650a8985dc9d82de01.debug - chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/82/e32d88a25444b424d0c4650a8985dc9d82de01.debug - strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/dwi_mask_bad_slices - objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/82/e32d88a25444b424d0c4650a8985dc9d82de01.debug debian/cmtk/usr/lib/cmtk/bin/dwi_mask_bad_slices install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/c7 objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/dcm2image debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/c7/a9075bdc946942024ca3e13fec519d5dd6c2d8.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/c7/a9075bdc946942024ca3e13fec519d5dd6c2d8.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/dcm2image objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/c7/a9075bdc946942024ca3e13fec519d5dd6c2d8.debug debian/cmtk/usr/lib/cmtk/bin/dcm2image + install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/fe + objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/detect_adni_phantom debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/fe/2c3d7e799fde2084c6e25463072142f0e2329d.debug + chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/fe/2c3d7e799fde2084c6e25463072142f0e2329d.debug + strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/detect_adni_phantom + objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/fe/2c3d7e799fde2084c6e25463072142f0e2329d.debug debian/cmtk/usr/lib/cmtk/bin/detect_adni_phantom install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/86 objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/dof2mat debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/86/ab8b554f3cc61f3e6373771bec51884a1c19b4.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/86/ab8b554f3cc61f3e6373771bec51884a1c19b4.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/dof2mat objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/86/ab8b554f3cc61f3e6373771bec51884a1c19b4.debug debian/cmtk/usr/lib/cmtk/bin/dof2mat + install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/b8 + objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/detect_spheres_matched_filter debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/b8/13bc277ae1ff18436f6ab5d131c16b61943e99.debug + chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/b8/13bc277ae1ff18436f6ab5d131c16b61943e99.debug + strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/detect_spheres_matched_filter + objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/b8/13bc277ae1ff18436f6ab5d131c16b61943e99.debug debian/cmtk/usr/lib/cmtk/bin/detect_spheres_matched_filter install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/d4 objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/describe debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/d4/796744f0af7ece2dc157119e482e794ad0293b.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/d4/796744f0af7ece2dc157119e482e794ad0293b.debug @@ -4861,16 +4914,6 @@ chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/9c/b10d895fd2c956a9585af25ce0f7216df9ab66.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/convertx objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/9c/b10d895fd2c956a9585af25ce0f7216df9ab66.debug debian/cmtk/usr/lib/cmtk/bin/convertx - install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/b8 - objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/detect_spheres_matched_filter debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/b8/13bc277ae1ff18436f6ab5d131c16b61943e99.debug - chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/b8/13bc277ae1ff18436f6ab5d131c16b61943e99.debug - strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/detect_spheres_matched_filter - objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/b8/13bc277ae1ff18436f6ab5d131c16b61943e99.debug debian/cmtk/usr/lib/cmtk/bin/detect_spheres_matched_filter - install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/fe - objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/detect_adni_phantom debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/fe/2c3d7e799fde2084c6e25463072142f0e2329d.debug - chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/fe/2c3d7e799fde2084c6e25463072142f0e2329d.debug - strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/detect_adni_phantom - objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/fe/2c3d7e799fde2084c6e25463072142f0e2329d.debug debian/cmtk/usr/lib/cmtk/bin/detect_adni_phantom install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/ea objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/destripe debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/ea/ba1c7dc180189fe720febb7f2c8b89636cd7d7.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/ea/ba1c7dc180189fe720febb7f2c8b89636cd7d7.debug @@ -4881,11 +4924,21 @@ chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/20/00ac651035468ed4d89107aa86bd2377066076.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/dbtool objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/20/00ac651035468ed4d89107aa86bd2377066076.debug debian/cmtk/usr/lib/cmtk/bin/dbtool + install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/5a + objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/convert_warp debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/5a/9b62fef4cd6fba279dc9aabbe635b6ff3a0330.debug + chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/5a/9b62fef4cd6fba279dc9aabbe635b6ff3a0330.debug + strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/convert_warp + objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/5a/9b62fef4cd6fba279dc9aabbe635b6ff3a0330.debug debian/cmtk/usr/lib/cmtk/bin/convert_warp install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/3e objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/avg_adm debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/3e/0a0e7ca81434c34bbdb45238172c0f3b610210.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/3e/0a0e7ca81434c34bbdb45238172c0f3b610210.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/avg_adm objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/3e/0a0e7ca81434c34bbdb45238172c0f3b610210.debug debian/cmtk/usr/lib/cmtk/bin/avg_adm + install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/61 + objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/concat_affine debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/61/ce93493207d20d52c2162e5a7719a5d9f8cb0b.debug + chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/61/ce93493207d20d52c2162e5a7719a5d9f8cb0b.debug + strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/concat_affine + objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/61/ce93493207d20d52c2162e5a7719a5d9f8cb0b.debug debian/cmtk/usr/lib/cmtk/bin/concat_affine install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/5e objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/average_images debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/5e/df79a22f99f58b266087fa836d64e84651951e.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/5e/df79a22f99f58b266087fa836d64e84651951e.debug @@ -4896,31 +4949,21 @@ chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/6b/5162c622df9c380b104c6c6ad2d3399aedacf0.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/asegment_sri24 objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/6b/5162c622df9c380b104c6c6ad2d3399aedacf0.debug debian/cmtk/usr/lib/cmtk/bin/asegment_sri24 - install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/4e - objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/average_affine debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/4e/68dcbddafc1f26de5ef294ef547e033ef794ea.debug - chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/4e/68dcbddafc1f26de5ef294ef547e033ef794ea.debug - strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/average_affine - objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/4e/68dcbddafc1f26de5ef294ef547e033ef794ea.debug debian/cmtk/usr/lib/cmtk/bin/average_affine - install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/61 - objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/concat_affine debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/61/ce93493207d20d52c2162e5a7719a5d9f8cb0b.debug - chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/61/ce93493207d20d52c2162e5a7719a5d9f8cb0b.debug - strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/concat_affine - objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/61/ce93493207d20d52c2162e5a7719a5d9f8cb0b.debug debian/cmtk/usr/lib/cmtk/bin/concat_affine install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/0b objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/average_labels debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/0b/e63487201db605551807b7f1d49110ca055604.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/0b/e63487201db605551807b7f1d49110ca055604.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/average_labels objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/0b/e63487201db605551807b7f1d49110ca055604.debug debian/cmtk/usr/lib/cmtk/bin/average_labels - install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/5a - objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/convert_warp debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/5a/9b62fef4cd6fba279dc9aabbe635b6ff3a0330.debug - chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/5a/9b62fef4cd6fba279dc9aabbe635b6ff3a0330.debug - strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/convert_warp - objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/5a/9b62fef4cd6fba279dc9aabbe635b6ff3a0330.debug debian/cmtk/usr/lib/cmtk/bin/convert_warp install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/d7 objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/asegment debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/d7/6c9c7bb9c9547acfa52b4cb3b5c54f62987c7e.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/d7/6c9c7bb9c9547acfa52b4cb3b5c54f62987c7e.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/asegment objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/d7/6c9c7bb9c9547acfa52b4cb3b5c54f62987c7e.debug debian/cmtk/usr/lib/cmtk/bin/asegment + install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/4e + objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/average_affine debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/4e/68dcbddafc1f26de5ef294ef547e033ef794ea.debug + chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/4e/68dcbddafc1f26de5ef294ef547e033ef794ea.debug + strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/average_affine + objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/4e/68dcbddafc1f26de5ef294ef547e033ef794ea.debug debian/cmtk/usr/lib/cmtk/bin/average_affine install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/cmtk/usr/lib/debug/.dwz/x86_64-linux-gnu debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/cmtk/usr/lib/debug/.dwz @@ -4932,27 +4975,27 @@ rm -f debian/cmtk/DEBIAN/shlibs dh_shlibdeps -a install -m0755 -d debian/cmtk/DEBIAN - dpkg-shlibdeps -Tdebian/cmtk.substvars debian/cmtk/usr/lib/cmtk/libcmtkRegistration.so debian/cmtk/usr/lib/cmtk/libcmtkBase.so debian/cmtk/usr/lib/cmtk/libcmtkSegmentation.so debian/cmtk/usr/lib/cmtk/libcmtkIO.so debian/cmtk/usr/lib/cmtk/libcmtkSystem.so debian/cmtk/usr/lib/cmtk/libcmtkRecon.so debian/cmtk/usr/lib/cmtk/libcmtkNumerics.so debian/cmtk/usr/lib/cmtk/libcmtkMxml.so debian/cmtk/usr/lib/cmtk/libNrrdIO.so debian/cmtk/usr/lib/cmtk/bin/xform2dfield debian/cmtk/usr/lib/cmtk/bin/xform2scalar debian/cmtk/usr/lib/cmtk/bin/xform2itk debian/cmtk/usr/lib/cmtk/bin/warp2ps debian/cmtk/usr/lib/cmtk/bin/vtkxform debian/cmtk/usr/lib/cmtk/bin/volume_reconstruction debian/cmtk/usr/lib/cmtk/bin/unwarp_image_phantom debian/cmtk/usr/lib/cmtk/bin/volume_injection debian/cmtk/usr/lib/cmtk/bin/warpx debian/cmtk/usr/lib/cmtk/bin/warp debian/cmtk/usr/lib/cmtk/bin/unsplit debian/cmtk/usr/lib/cmtk/bin/vol2csv debian/cmtk/usr/lib/cmtk/bin/sympl debian/cmtk/usr/lib/cmtk/bin/ttest debian/cmtk/usr/lib/cmtk/bin/streamxform debian/cmtk/usr/lib/cmtk/bin/symplx debian/cmtk/usr/lib/cmtk/bin/statistics debian/cmtk/usr/lib/cmtk/bin/stream_pixels debian/cmtk/usr/lib/cmtk/bin/split debian/cmtk/usr/lib/cmtk/bin/mcwarp debian/cmtk/usr/lib/cmtk/bin/similarity debian/cmtk/usr/lib/cmtk/bin/sbai debian/cmtk/usr/lib/cmtk/bin/sequence debian/cmtk/usr/lib/cmtk/bin/reformatx debian/cmtk/usr/lib/cmtk/bin/sba debian/cmtk/usr/lib/cmtk/bin/reorient debian/cmtk/usr/lib/cmtk/bin/regress debian/cmtk/usr/lib/cmtk/bin/probe debian/cmtk/usr/lib/cmtk/bin/pxsearch debian/cmtk/usr/lib/cmtk/bin/mrbias debian/cmtk/usr/lib/cmtk/bin/registrationx debian/cmtk/usr/lib/cmtk/bin/overlap debian/cmtk/usr/lib/cmtk/bin/registration debian/cmtk/usr/lib/cmtk/bin/mcaffine debian/cmtk/usr/lib/cmtk/bin/mk_phantom_3d debian/cmtk/usr/lib/cmtk/bin/mk_nifti_hdr debian/cmtk/usr/lib/cmtk/bin/mk_analyze_hdr debian/cmtk/usr/lib/cmtk/bin/mk_adni_phantom debian/cmtk/usr/lib/cmtk/bin/mat2dof debian/cmtk/usr/lib/cmtk/bin/jidb debian/cmtk/usr/lib/cmtk/bin/make_initial_affine debian/cmtk/usr/lib/cmtk/bin/lvote debian/cmtk/usr/lib/cmtk/bin/imagemath debian/cmtk/usr/lib/cmtk/bin/lsba debian/cmtk/usr/lib/cmtk/bin/lmsba debian/cmtk/usr/lib/cmtk/bin/interleaved_bad_slices debian/cmtk/usr/lib/cmtk/bin/groupwise_warp debian/cmtk/usr/lib/cmtk/bin/levelset debian/cmtk/usr/lib/cmtk/bin/groupwise_affine debian/cmtk/usr/lib/cmtk/bin/histogram debian/cmtk/usr/lib/cmtk/bin/groupwise_init debian/cmtk/usr/lib/cmtk/bin/hausdorff debian/cmtk/usr/lib/cmtk/bin/glm debian/cmtk/usr/lib/cmtk/bin/gregxform debian/cmtk/usr/lib/cmtk/bin/gmm debian/cmtk/usr/lib/cmtk/bin/fit_spline_xform debian/cmtk/usr/lib/cmtk/bin/fit_spline_dfield debian/cmtk/usr/lib/cmtk/bin/film debian/cmtk/usr/lib/cmtk/bin/geomatch debian/cmtk/usr/lib/cmtk/bin/fit_affine_xform debian/cmtk/usr/lib/cmtk/bin/fit_affine_xform_landmarks debian/cmtk/usr/lib/cmtk/bin/epiunwarp debian/cmtk/usr/lib/cmtk/bin/filter debian/cmtk/usr/lib/cmtk/bin/fit_affine_dfield debian/cmtk/usr/lib/cmtk/bin/fibxform debian/cmtk/usr/lib/cmtk/bin/fib2image debian/cmtk/usr/lib/cmtk/bin/dwi_mask_bad_slices debian/cmtk/usr/lib/cmtk/bin/dcm2image debian/cmtk/usr/lib/cmtk/bin/dof2mat debian/cmtk/usr/lib/cmtk/bin/describe debian/cmtk/usr/lib/cmtk/bin/convertx debian/cmtk/usr/lib/cmtk/bin/detect_spheres_matched_filter debian/cmtk/usr/lib/cmtk/bin/detect_adni_phantom debian/cmtk/usr/lib/cmtk/bin/destripe debian/cmtk/usr/lib/cmtk/bin/dbtool debian/cmtk/usr/lib/cmtk/bin/avg_adm debian/cmtk/usr/lib/cmtk/bin/average_images debian/cmtk/usr/lib/cmtk/bin/asegment_sri24 debian/cmtk/usr/lib/cmtk/bin/average_affine debian/cmtk/usr/lib/cmtk/bin/concat_affine debian/cmtk/usr/lib/cmtk/bin/average_labels debian/cmtk/usr/lib/cmtk/bin/convert_warp debian/cmtk/usr/lib/cmtk/bin/asegment -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRecon.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRecon.so' + dpkg-shlibdeps -Tdebian/cmtk.substvars debian/cmtk/usr/lib/cmtk/libcmtkRegistration.so debian/cmtk/usr/lib/cmtk/libcmtkBase.so debian/cmtk/usr/lib/cmtk/libcmtkIO.so debian/cmtk/usr/lib/cmtk/libcmtkSegmentation.so debian/cmtk/usr/lib/cmtk/libcmtkSystem.so debian/cmtk/usr/lib/cmtk/libcmtkRecon.so debian/cmtk/usr/lib/cmtk/libcmtkNumerics.so debian/cmtk/usr/lib/cmtk/libcmtkMxml.so debian/cmtk/usr/lib/cmtk/libNrrdIO.so debian/cmtk/usr/lib/cmtk/bin/xform2dfield debian/cmtk/usr/lib/cmtk/bin/xform2itk debian/cmtk/usr/lib/cmtk/bin/xform2scalar debian/cmtk/usr/lib/cmtk/bin/warp2ps debian/cmtk/usr/lib/cmtk/bin/volume_reconstruction debian/cmtk/usr/lib/cmtk/bin/volume_injection debian/cmtk/usr/lib/cmtk/bin/vtkxform debian/cmtk/usr/lib/cmtk/bin/warpx debian/cmtk/usr/lib/cmtk/bin/unwarp_image_phantom debian/cmtk/usr/lib/cmtk/bin/vol2csv debian/cmtk/usr/lib/cmtk/bin/warp debian/cmtk/usr/lib/cmtk/bin/ttest debian/cmtk/usr/lib/cmtk/bin/unsplit debian/cmtk/usr/lib/cmtk/bin/sympl debian/cmtk/usr/lib/cmtk/bin/streamxform debian/cmtk/usr/lib/cmtk/bin/statistics debian/cmtk/usr/lib/cmtk/bin/split debian/cmtk/usr/lib/cmtk/bin/stream_pixels debian/cmtk/usr/lib/cmtk/bin/symplx debian/cmtk/usr/lib/cmtk/bin/similarity debian/cmtk/usr/lib/cmtk/bin/sbai debian/cmtk/usr/lib/cmtk/bin/mcwarp debian/cmtk/usr/lib/cmtk/bin/sequence debian/cmtk/usr/lib/cmtk/bin/sba debian/cmtk/usr/lib/cmtk/bin/reformatx debian/cmtk/usr/lib/cmtk/bin/regress debian/cmtk/usr/lib/cmtk/bin/reorient debian/cmtk/usr/lib/cmtk/bin/probe debian/cmtk/usr/lib/cmtk/bin/pxsearch debian/cmtk/usr/lib/cmtk/bin/overlap debian/cmtk/usr/lib/cmtk/bin/registrationx debian/cmtk/usr/lib/cmtk/bin/mrbias debian/cmtk/usr/lib/cmtk/bin/registration debian/cmtk/usr/lib/cmtk/bin/mk_phantom_3d debian/cmtk/usr/lib/cmtk/bin/mcaffine debian/cmtk/usr/lib/cmtk/bin/mk_adni_phantom debian/cmtk/usr/lib/cmtk/bin/mk_nifti_hdr debian/cmtk/usr/lib/cmtk/bin/mk_analyze_hdr debian/cmtk/usr/lib/cmtk/bin/mat2dof debian/cmtk/usr/lib/cmtk/bin/make_initial_affine debian/cmtk/usr/lib/cmtk/bin/lsba debian/cmtk/usr/lib/cmtk/bin/jidb debian/cmtk/usr/lib/cmtk/bin/lvote debian/cmtk/usr/lib/cmtk/bin/lmsba debian/cmtk/usr/lib/cmtk/bin/imagemath debian/cmtk/usr/lib/cmtk/bin/interleaved_bad_slices debian/cmtk/usr/lib/cmtk/bin/groupwise_warp debian/cmtk/usr/lib/cmtk/bin/groupwise_affine debian/cmtk/usr/lib/cmtk/bin/histogram debian/cmtk/usr/lib/cmtk/bin/levelset debian/cmtk/usr/lib/cmtk/bin/hausdorff debian/cmtk/usr/lib/cmtk/bin/groupwise_init debian/cmtk/usr/lib/cmtk/bin/gregxform debian/cmtk/usr/lib/cmtk/bin/gmm debian/cmtk/usr/lib/cmtk/bin/glm debian/cmtk/usr/lib/cmtk/bin/fit_spline_xform debian/cmtk/usr/lib/cmtk/bin/fit_spline_dfield debian/cmtk/usr/lib/cmtk/bin/geomatch debian/cmtk/usr/lib/cmtk/bin/fit_affine_xform debian/cmtk/usr/lib/cmtk/bin/fit_affine_xform_landmarks debian/cmtk/usr/lib/cmtk/bin/film debian/cmtk/usr/lib/cmtk/bin/filter debian/cmtk/usr/lib/cmtk/bin/dwi_mask_bad_slices debian/cmtk/usr/lib/cmtk/bin/epiunwarp debian/cmtk/usr/lib/cmtk/bin/fit_affine_dfield debian/cmtk/usr/lib/cmtk/bin/fibxform debian/cmtk/usr/lib/cmtk/bin/fib2image debian/cmtk/usr/lib/cmtk/bin/dcm2image debian/cmtk/usr/lib/cmtk/bin/detect_adni_phantom debian/cmtk/usr/lib/cmtk/bin/dof2mat debian/cmtk/usr/lib/cmtk/bin/detect_spheres_matched_filter debian/cmtk/usr/lib/cmtk/bin/describe debian/cmtk/usr/lib/cmtk/bin/convertx debian/cmtk/usr/lib/cmtk/bin/destripe debian/cmtk/usr/lib/cmtk/bin/dbtool debian/cmtk/usr/lib/cmtk/bin/convert_warp debian/cmtk/usr/lib/cmtk/bin/avg_adm debian/cmtk/usr/lib/cmtk/bin/concat_affine debian/cmtk/usr/lib/cmtk/bin/average_images debian/cmtk/usr/lib/cmtk/bin/asegment_sri24 debian/cmtk/usr/lib/cmtk/bin/average_labels debian/cmtk/usr/lib/cmtk/bin/asegment debian/cmtk/usr/lib/cmtk/bin/average_affine dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkNumerics.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkNumerics.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRegistration.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRegistration.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSegmentation.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSegmentation.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRecon.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRecon.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkNumerics.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkNumerics.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRegistration.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRegistration.so' +dpkg-shlibdeps: warning: debian/cmtk/usr/lib/cmtk/libNrrdIO.so contains an unresolvable reference to symbol sqrt: it's probably a plugin dpkg-shlibdeps: warning: can't extract name and version from library name 'libNrrdIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libNrrdIO.so' -dpkg-shlibdeps: warning: debian/cmtk/usr/lib/cmtk/libNrrdIO.so contains an unresolvable reference to symbol sqrt: it's probably a plugin -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/cmtk/usr/lib/cmtk/bin/mk_analyze_hdr debian/cmtk/usr/lib/cmtk/bin/mk_nifti_hdr debian/cmtk/usr/lib/cmtk/bin/sequence debian/cmtk/usr/lib/cmtk/libcmtkBase.so were not linked against libfftw3_threads.so.3 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/cmtk/usr/lib/cmtk/bin/mk_analyze_hdr debian/cmtk/usr/lib/cmtk/bin/sequence debian/cmtk/usr/lib/cmtk/libcmtkBase.so debian/cmtk/usr/lib/cmtk/bin/mk_nifti_hdr were not linked against libfftw3_threads.so.3 (they use none of the library's symbols) dh_installdeb install -m0755 -d debian/cmtk/DEBIAN find debian/cmtk/etc -type f -printf '/etc/%P @@ -4977,8 +5020,8 @@ dh_builddeb dpkg-deb --root-owner-group --build debian/cmtk .. dpkg-deb --root-owner-group --build debian/.debhelper/cmtk/dbgsym-root .. -dpkg-deb: building package 'cmtk-dbgsym' in '../cmtk-dbgsym_3.3.1p2+dfsg-2_amd64.deb'. dpkg-deb: building package 'cmtk' in '../cmtk_3.3.1p2+dfsg-2_amd64.deb'. +dpkg-deb: building package 'cmtk-dbgsym' in '../cmtk-dbgsym_3.3.1p2+dfsg-2_amd64.deb'. dpkg-genbuildinfo --build=binary -O../cmtk_3.3.1p2+dfsg-2_amd64.buildinfo dpkg-genchanges --build=binary -O../cmtk_3.3.1p2+dfsg-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -4986,12 +5029,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1278153/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1278153/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2055053 and its subdirectories -I: Current time: Fri Jun 21 03:00:07 -12 2024 -I: pbuilder-time-stamp: 1718982007 +I: removing directory /srv/workspace/pbuilder/1278153 and its subdirectories +I: Current time: Sat May 20 22:42:57 +14 2023 +I: pbuilder-time-stamp: 1684572177