--- /srv/reproducible-results/rbuild-debian/r-b-build.2eZj3vrG/b1/python-cogent_2023.2.12a1+dfsg-2+deb12u1_amd64.changes +++ /srv/reproducible-results/rbuild-debian/r-b-build.2eZj3vrG/b2/python-cogent_2023.2.12a1+dfsg-2+deb12u1_amd64.changes ├── Files │ @@ -1,3 +1,3 @@ │ │ - 9aa77bd04d91d55db634e668143e8cec 733516 doc optional python-cogent-doc_2023.2.12a1+dfsg-2+deb12u1_all.deb │ + 0ae1475d737894a581e97c9c21ae27ca 733508 doc optional python-cogent-doc_2023.2.12a1+dfsg-2+deb12u1_all.deb │ a04c854946527c80ff014af3c64a4515 1895936 python optional python3-cogent3_2023.2.12a1+dfsg-2+deb12u1_amd64.deb ├── python-cogent-doc_2023.2.12a1+dfsg-2+deb12u1_all.deb │ ├── file list │ │ @@ -1,3 +1,3 @@ │ │ -rw-r--r-- 0 0 0 4 2023-10-29 20:45:00.000000 debian-binary │ │ -rw-r--r-- 0 0 0 10360 2023-10-29 20:45:00.000000 control.tar.xz │ │ --rw-r--r-- 0 0 0 722964 2023-10-29 20:45:00.000000 data.tar.xz │ │ +-rw-r--r-- 0 0 0 722956 2023-10-29 20:45:00.000000 data.tar.xz │ ├── control.tar.xz │ │ ├── control.tar │ │ │ ├── ./md5sums │ │ │ │ ├── ./md5sums │ │ │ │ │┄ Files differ │ ├── data.tar.xz │ │ ├── data.tar │ │ │ ├── ./usr/share/doc/python-cogent-doc/html/api/tree/classes/cogent3.core.tree.PhyloNode.html │ │ │ │ @@ -287,15 +287,15 @@ │ │ │ │

Note: names present in only one of the two trees will count as │ │ │ │ mismatches: if you don’t want this behavior, strip out the non-matching │ │ │ │ tips first.

│ │ │ │ │ │ │ │ │ │ │ │
│ │ │ │
│ │ │ │ -compare_by_tip_distances(other, sample=None, dist_f=<function distance_from_r>, shuffle_f=<bound method Random.shuffle of <random.Random object at 0x2454e50>>)
│ │ │ │ +compare_by_tip_distances(other, sample=None, dist_f=<function distance_from_r>, shuffle_f=<bound method Random.shuffle of <random.Random object at 0x2276690>>) │ │ │ │

Compares self to other using tip-to-tip distance matrices.

│ │ │ │

Value returned is dist_f(m1, m2) for the two matrices. Default is │ │ │ │ to use the Pearson correlation coefficient, with +1 giving a distance │ │ │ │ of 0 and -1 giving a distance of +1 (the madimum possible value). │ │ │ │ Depending on the application, you might instead want to use │ │ │ │ distance_from_r_squared, which counts correlations of both +1 and -1 │ │ │ │ as identical (0 distance).

│ │ │ │ ├── html2text {} │ │ │ │ │ @@ -144,15 +144,15 @@ │ │ │ │ │ differ. │ │ │ │ │ Other is expected to be a tree object compatible with PhyloNode. │ │ │ │ │ Note: names present in only one of the two trees will count as │ │ │ │ │ mismatches: if you don’t want this behavior, strip out the non- │ │ │ │ │ matching tips first. │ │ │ │ │ compare_by_tip_distances(other, sample=None, dist_f=, shuffle_f=>)¶ │ │ │ │ │ + >)¶ │ │ │ │ │ Compares self to other using tip-to-tip distance matrices. │ │ │ │ │ Value returned is dist_f(m1, m2) for the two matrices. Default is │ │ │ │ │ to use the Pearson correlation coefficient, with +1 giving a │ │ │ │ │ distance of 0 and -1 giving a distance of +1 (the madimum possible │ │ │ │ │ value). Depending on the application, you might instead want to use │ │ │ │ │ distance_from_r_squared, which counts correlations of both +1 and - │ │ │ │ │ 1 as identical (0 distance). │ │ │ ├── ./usr/share/doc/python-cogent-doc/html/searchindex.js │ │ │ │ ├── js-beautify {} │ │ │ │ │ @@ -1629,15 +1629,15 @@ │ │ │ │ │ "compare_by_nam": 38, │ │ │ │ │ "compare_by_subset": 38, │ │ │ │ │ "exclude_absent_taxa": 38, │ │ │ │ │ "compare_by_tip_dist": 38, │ │ │ │ │ "dist_f": 38, │ │ │ │ │ "distance_from_r": 38, │ │ │ │ │ "shuffle_f": 38, │ │ │ │ │ - "0x2454e50": 38, │ │ │ │ │ + "0x2276690": 38, │ │ │ │ │ "m1": 38, │ │ │ │ │ "m2": 38, │ │ │ │ │ "pearson": [38, 80], │ │ │ │ │ "correl": [38, 80, 102], │ │ │ │ │ "coeffici": 38, │ │ │ │ │ "madimum": 38, │ │ │ │ │ "applic": [38, 49, 66, 124],