{"diffoscope-json-version": 1, "source1": "/srv/reproducible-results/rbuild-debian/r-b-build.EsSTMZO7/b1/nitime_0.9-1_amd64.changes", "source2": "/srv/reproducible-results/rbuild-debian/r-b-build.EsSTMZO7/b2/nitime_0.9-1_amd64.changes", "unified_diff": null, "details": [{"source1": "Files", "source2": "Files", "unified_diff": "@@ -1,3 +1,3 @@\n \n- fa9fdf5070e7963a1a8aa0724d42a6a6 2396552 doc optional python-nitime-doc_0.9-1_all.deb\n+ b566243992394935046da81e08ba86be 2396512 doc optional python-nitime-doc_0.9-1_all.deb\n  be8ef11c4bdedde33f3e700600af2108 2539880 python optional python3-nitime_0.9-1_all.deb\n"}, {"source1": "python-nitime-doc_0.9-1_all.deb", "source2": "python-nitime-doc_0.9-1_all.deb", "unified_diff": null, "details": [{"source1": "file list", "source2": "file list", "unified_diff": "@@ -1,3 +1,3 @@\n -rw-r--r--   0        0        0        4 2020-12-20 14:50:57.000000 debian-binary\n--rw-r--r--   0        0        0     5044 2020-12-20 14:50:57.000000 control.tar.xz\n--rw-r--r--   0        0        0  2391316 2020-12-20 14:50:57.000000 data.tar.xz\n+-rw-r--r--   0        0        0     5040 2020-12-20 14:50:57.000000 control.tar.xz\n+-rw-r--r--   0        0        0  2391280 2020-12-20 14:50:57.000000 data.tar.xz\n"}, {"source1": "control.tar.xz", "source2": "control.tar.xz", "unified_diff": null, "details": [{"source1": "control.tar", "source2": "control.tar", "unified_diff": null, "details": [{"source1": "./md5sums", "source2": "./md5sums", "unified_diff": null, "details": [{"source1": "./md5sums", "source2": "./md5sums", "comments": ["Files differ"], "unified_diff": null}]}]}]}, {"source1": "data.tar.xz", "source2": "data.tar.xz", "unified_diff": null, "details": [{"source1": "data.tar", "source2": "data.tar", "unified_diff": null, "details": [{"source1": "file list", "source2": "file list", "unified_diff": "@@ -127,36 +127,36 @@\n -rw-r--r--   0 root         (0) root         (0)     9086 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/devel/how_to_release.html\n -rw-r--r--   0 root         (0) root         (0)     8044 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/devel/index.html\n -rw-r--r--   0 root         (0) root         (0)    19208 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/devel/patching.html\n -rw-r--r--   0 root         (0) root         (0)    13823 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/devel/set_up_fork.html\n -rw-r--r--   0 root         (0) root         (0)     4324 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/devel/usecases.html\n drwxr-xr-x   0 root         (0) root         (0)        0 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/discussion/\n -rw-r--r--   0 root         (0) root         (0)    17537 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/discussion/base_classes.html\n--rw-r--r--   0 root         (0) root         (0)     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./usr/share/doc/python-nitime-doc/html/documentation.html\n drwxr-xr-x   0 root         (0) root         (0)        0 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/examples/\n--rw-r--r--   0 root         (0) root         (0)    15852 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/examples/ar_est_1var.html\n--rw-r--r--   0 root         (0) root         (0)    34619 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/examples/ar_est_2vars.html\n--rw-r--r--   0 root         (0) root         (0)    35689 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/examples/ar_est_3vars.html\n--rw-r--r--   0 root         (0) root         (0)    20041 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/examples/ar_model_fit.html\n--rw-r--r--   0 root         (0) root         (0)    17163 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/examples/event_related_fmri.html\n--rw-r--r--   0 root         (0) 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./usr/share/doc/python-nitime-doc/html/examples/multi_taper_coh.html\n--rw-r--r--   0 root         (0) root         (0)    43573 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/examples/multi_taper_spectral_estimation.html\n--rw-r--r--   0 root         (0) root         (0)    35262 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/examples/resting_state_fmri.html\n--rw-r--r--   0 root         (0) root         (0)    28299 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/examples/seed_analysis.html\n+-rw-r--r--   0 root         (0) root         (0)    15860 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/examples/ar_est_1var.html\n+-rw-r--r--   0 root         (0) root         (0)    34591 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/examples/ar_est_2vars.html\n+-rw-r--r--   0 root         (0) root         (0)    35773 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/examples/ar_est_3vars.html\n+-rw-r--r--   0 root         (0) root         (0)    20093 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/examples/ar_model_fit.html\n+-rw-r--r--   0 root         (0) root         (0)    17231 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/examples/event_related_fmri.html\n+-rw-r--r--   0 root         (0) root         (0)    48068 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/examples/filtering_fmri.html\n+-rw-r--r--   0 root         (0) root         (0)    25463 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/examples/granger_fmri.html\n+-rw-r--r--   0 root         (0) root         (0)    25822 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/examples/grasshopper.html\n+-rw-r--r--   0 root         (0) root         (0)     8816 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/examples/index.html\n+-rw-r--r--   0 root         (0) root         (0)    28223 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/examples/mtm_baseband_power.html\n+-rw-r--r--   0 root         (0) root         (0)    28760 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/examples/mtm_harmonic_test.html\n+-rw-r--r--   0 root         (0) root         (0)    37174 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/examples/multi_taper_coh.html\n+-rw-r--r--   0 root         (0) root         (0)    43305 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/examples/multi_taper_spectral_estimation.html\n+-rw-r--r--   0 root         (0) root         (0)    35146 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/examples/resting_state_fmri.html\n+-rw-r--r--   0 root         (0) root         (0)    28339 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/examples/seed_analysis.html\n -rw-r--r--   0 root         (0) root         (0)    20898 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/examples/snr_example.html\n -rw-r--r--   0 root         (0) root         (0)    68809 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/genindex.html\n -rw-r--r--   0 root         (0) root         (0)     5768 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/index.html\n -rw-r--r--   0 root         (0) root         (0)     4490 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/news.html\n -rw-r--r--   0 root         (0) root         (0)    10653 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/py-modindex.html\n -rw-r--r--   0 root         (0) root         (0)     4318 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/search.html\n -rw-r--r--   0 root         (0) root         (0)    80926 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/searchindex.js\n"}, {"source1": "./usr/share/doc/python-nitime-doc/html/discussion/index.html", "source2": "./usr/share/doc/python-nitime-doc/html/discussion/index.html", "unified_diff": "@@ -12,15 +12,15 @@\n     <script id=\"documentation_options\" data-url_root=\"../\" src=\"../_static/documentation_options.js\"></script>\n     <script src=\"../_static/jquery.js\"></script>\n     <script src=\"../_static/underscore.js\"></script>\n     <script src=\"../_static/doctools.js\"></script>\n     <link rel=\"index\" title=\"Index\" href=\"../genindex.html\" />\n     <link rel=\"search\" title=\"Search\" href=\"../search.html\" />\n     <link rel=\"next\" title=\"A note about the discussion section\" href=\"note_about_discussion.html\" />\n-    <link rel=\"prev\" title=\"Seed correlation/coherence with fMRI data\" href=\"../examples/seed_analysis.html\" />\n+    <link rel=\"prev\" title=\"Coherency analysis of fMRI data\" href=\"../examples/resting_state_fmri.html\" />\n   <meta name=\"keywords\" content=\"nipy, neuroimaging, python, neuroscience, time\n \t\t\t\t series\">\n \n   </head><body>\n <div style=\"background-color: white; text-align: left; padding: 10px 10px 15px 15px\">\n  <a href=\"../index.html\">\n   <img src=\"../_static/nitime-banner-bg.png\" alt=\"NIPY logo\"  border=\"0\" />\n@@ -35,15 +35,15 @@\n         <li class=\"right\" >\n           <a href=\"../py-modindex.html\" title=\"Python Module Index\"\n              >modules</a> |</li>\n         <li class=\"right\" >\n           <a href=\"note_about_discussion.html\" title=\"A note about the discussion section\"\n              accesskey=\"N\">next</a> |</li>\n         <li class=\"right\" >\n-          <a href=\"../examples/seed_analysis.html\" title=\"Seed correlation/coherence with fMRI data\"\n+          <a href=\"../examples/resting_state_fmri.html\" title=\"Coherency analysis of fMRI data\"\n              accesskey=\"P\">previous</a> |</li>\n   <li><a href=\"../index.html\">Nitime Home</a> |&nbsp;</li>\n \n           <li class=\"nav-item nav-item-1\"><a href=\"../documentation.html\" accesskey=\"U\">Nitime Documentation</a> &#187;</li>\n         <li class=\"nav-item nav-item-this\"><a href=\"\">Neuroimaging in Python</a></li> \n       </ul>\n     </div>  \n@@ -97,16 +97,16 @@\n \thref=\"http://mail.scipy.org/mailman/listinfo/nipy-devel\">Mailing List</a></li>\n     <li><a class=\"reference external\"\n \thref=\"http://nipy.sourceforge.net/software/license/index.html\">License</a></li>\n   </ul>\n \n \n   <h4>Previous topic</h4>\n-  <p class=\"topless\"><a href=\"../examples/seed_analysis.html\"\n-                        title=\"previous chapter\">Seed correlation/coherence with fMRI data</a></p>\n+  <p class=\"topless\"><a href=\"../examples/resting_state_fmri.html\"\n+                        title=\"previous chapter\">Coherency analysis of fMRI data</a></p>\n   <h4>Next topic</h4>\n   <p class=\"topless\"><a href=\"note_about_discussion.html\"\n                         title=\"next chapter\">A note about the discussion section</a></p>\n <div id=\"searchbox\" style=\"display: none\" role=\"search\">\n   <h3 id=\"searchlabel\">Quick search</h3>\n     <div class=\"searchformwrapper\">\n     <form class=\"search\" action=\"../search.html\" method=\"get\">\n@@ -129,15 +129,15 @@\n         <li class=\"right\" >\n           <a href=\"../py-modindex.html\" title=\"Python Module Index\"\n              >modules</a> |</li>\n         <li class=\"right\" >\n           <a href=\"note_about_discussion.html\" title=\"A note about the discussion section\"\n              >next</a> |</li>\n         <li class=\"right\" >\n-          <a href=\"../examples/seed_analysis.html\" title=\"Seed correlation/coherence with fMRI data\"\n+          <a href=\"../examples/resting_state_fmri.html\" title=\"Coherency analysis of fMRI data\"\n              >previous</a> |</li>\n   <li><a href=\"../index.html\">Nitime Home</a> |&nbsp;</li>\n \n           <li class=\"nav-item nav-item-1\"><a href=\"../documentation.html\" >Nitime Documentation</a> &#187;</li>\n         <li class=\"nav-item nav-item-this\"><a href=\"\">Neuroimaging in Python</a></li> \n       </ul>\n     </div>\n", "details": [{"source1": "html2text {}", "source2": "html2text {}", "unified_diff": "@@ -31,15 +31,15 @@\n     * News\n *** NIPY Community ***\n     * Community_Home\n     * NIPY_Projects\n     * Mailing_List\n     * License\n *** Previous topic ***\n-Seed_correlation/coherence_with_fMRI_data\n+Coherency_analysis_of_fMRI_data\n *** Next topic ***\n A_note_about_the_discussion_section\n **** Quick search ****\n [q                   ] [Go]\n **** Navigation ****\n     * index\n     * modules |\n"}]}, {"source1": "./usr/share/doc/python-nitime-doc/html/documentation.html", "source2": "./usr/share/doc/python-nitime-doc/html/documentation.html", "comments": ["Ordering differences only"], "unified_diff": "@@ -71,29 +71,29 @@\n <li class=\"toctree-l2\"><a class=\"reference internal\" href=\"whatsnew/version0.6.html\">Release notes for nitime version 0.6</a></li>\n <li class=\"toctree-l2\"><a class=\"reference internal\" href=\"whatsnew/version0.5.html\">Release notes for nitime version 0.5</a></li>\n <li class=\"toctree-l2\"><a class=\"reference internal\" href=\"whatsnew/version0.4.html\">Release notes for nitime version 0.4</a></li>\n <li class=\"toctree-l2\"><a class=\"reference internal\" href=\"whatsnew/version0.3.html\">Release notes for nitime version 0.3</a></li>\n </ul>\n </li>\n <li class=\"toctree-l1\"><a class=\"reference internal\" href=\"examples/index.html\">Examples</a><ul>\n-<li class=\"toctree-l2\"><a class=\"reference internal\" href=\"examples/filtering_fmri.html\">Filtering and normalizing fMRI data</a></li>\n+<li class=\"toctree-l2\"><a class=\"reference internal\" href=\"examples/multi_taper_spectral_estimation.html\">Multitaper spectral estimation</a></li>\n+<li class=\"toctree-l2\"><a class=\"reference internal\" href=\"examples/event_related_fmri.html\">Event-related fMRI</a></li>\n+<li class=\"toctree-l2\"><a class=\"reference internal\" href=\"examples/seed_analysis.html\">Seed correlation/coherence with fMRI data</a></li>\n <li class=\"toctree-l2\"><a class=\"reference internal\" href=\"examples/mtm_baseband_power.html\">Multitaper method for baseband demodulation</a></li>\n <li class=\"toctree-l2\"><a class=\"reference internal\" href=\"examples/granger_fmri.html\">Granger \u2018causality\u2019 of fMRI data</a></li>\n+<li class=\"toctree-l2\"><a class=\"reference internal\" href=\"examples/multi_taper_coh.html\">Multitaper coherence estimation</a></li>\n <li class=\"toctree-l2\"><a class=\"reference internal\" href=\"examples/ar_est_2vars.html\">Multivariate auto-regressive modeling</a></li>\n-<li class=\"toctree-l2\"><a class=\"reference internal\" href=\"examples/snr_example.html\">Calculation of signal-to-noise and information</a></li>\n-<li class=\"toctree-l2\"><a class=\"reference internal\" href=\"examples/grasshopper.html\">Auditory processing in grasshoppers</a></li>\n-<li class=\"toctree-l2\"><a class=\"reference internal\" href=\"examples/event_related_fmri.html\">Event-related fMRI</a></li>\n <li class=\"toctree-l2\"><a class=\"reference internal\" href=\"examples/ar_model_fit.html\">Fitting an MAR model: analyzer interface</a></li>\n-<li class=\"toctree-l2\"><a class=\"reference internal\" href=\"examples/resting_state_fmri.html\">Coherency analysis of fMRI data</a></li>\n+<li class=\"toctree-l2\"><a class=\"reference internal\" href=\"examples/filtering_fmri.html\">Filtering and normalizing fMRI data</a></li>\n+<li class=\"toctree-l2\"><a class=\"reference internal\" href=\"examples/mtm_harmonic_test.html\">Multitaper F-test for harmonic components</a></li>\n <li class=\"toctree-l2\"><a class=\"reference internal\" href=\"examples/ar_est_3vars.html\">Multivariate auto-regressive modeling - 3 variables</a></li>\n-<li class=\"toctree-l2\"><a class=\"reference internal\" href=\"examples/multi_taper_coh.html\">Multitaper coherence estimation</a></li>\n <li class=\"toctree-l2\"><a class=\"reference internal\" href=\"examples/ar_est_1var.html\">Fitting an AR model: algorithm module interface</a></li>\n-<li class=\"toctree-l2\"><a class=\"reference internal\" href=\"examples/multi_taper_spectral_estimation.html\">Multitaper spectral estimation</a></li>\n-<li class=\"toctree-l2\"><a class=\"reference internal\" href=\"examples/mtm_harmonic_test.html\">Multitaper F-test for harmonic components</a></li>\n-<li class=\"toctree-l2\"><a class=\"reference internal\" href=\"examples/seed_analysis.html\">Seed correlation/coherence with fMRI data</a></li>\n+<li class=\"toctree-l2\"><a class=\"reference internal\" href=\"examples/grasshopper.html\">Auditory processing in grasshoppers</a></li>\n+<li class=\"toctree-l2\"><a class=\"reference internal\" href=\"examples/snr_example.html\">Calculation of signal-to-noise and information</a></li>\n+<li class=\"toctree-l2\"><a class=\"reference internal\" href=\"examples/resting_state_fmri.html\">Coherency analysis of fMRI data</a></li>\n </ul>\n </li>\n <li class=\"toctree-l1\"><a class=\"reference internal\" href=\"discussion/index.html\">Discussion</a><ul>\n <li class=\"toctree-l2\"><a class=\"reference internal\" href=\"discussion/note_about_discussion.html\">A note about the discussion section</a></li>\n <li class=\"toctree-l2\"><a class=\"reference internal\" href=\"discussion/multitaper_jackknife.html\">Jack-knifing a Multitaper SDF estimator</a></li>\n </ul>\n </li>\n", "details": [{"source1": "html2text {}", "source2": "html2text {}", "unified_diff": "@@ -27,29 +27,29 @@\n     * What\u00e2\u0080\u0099s_new_in_Nitime\n           o Release_notes_for_nitime_version_0.7\n           o Release_notes_for_nitime_version_0.6\n           o Release_notes_for_nitime_version_0.5\n           o Release_notes_for_nitime_version_0.4\n           o Release_notes_for_nitime_version_0.3\n     * Examples\n-          o Filtering_and_normalizing_fMRI_data\n+          o Multitaper_spectral_estimation\n+          o Event-related_fMRI\n+          o Seed_correlation/coherence_with_fMRI_data\n           o Multitaper_method_for_baseband_demodulation\n           o Granger_\u00e2\u0080\u0098causality\u00e2\u0080\u0099_of_fMRI_data\n+          o Multitaper_coherence_estimation\n           o Multivariate_auto-regressive_modeling\n-          o Calculation_of_signal-to-noise_and_information\n-          o Auditory_processing_in_grasshoppers\n-          o Event-related_fMRI\n           o Fitting_an_MAR_model:_analyzer_interface\n-          o Coherency_analysis_of_fMRI_data\n+          o Filtering_and_normalizing_fMRI_data\n+          o Multitaper_F-test_for_harmonic_components\n           o Multivariate_auto-regressive_modeling_-_3_variables\n-          o Multitaper_coherence_estimation\n           o Fitting_an_AR_model:_algorithm_module_interface\n-          o Multitaper_spectral_estimation\n-          o Multitaper_F-test_for_harmonic_components\n-          o Seed_correlation/coherence_with_fMRI_data\n+          o Auditory_processing_in_grasshoppers\n+          o Calculation_of_signal-to-noise_and_information\n+          o Coherency_analysis_of_fMRI_data\n     * Discussion\n           o A_note_about_the_discussion_section\n           o Jack-knifing_a_Multitaper_SDF_estimator\n     * Working_with_nitime_source_code\n           o Introduction\n           o Install_git\n           o Following_the_latest_source\n"}]}, {"source1": "./usr/share/doc/python-nitime-doc/html/examples/ar_est_1var.html", "source2": "./usr/share/doc/python-nitime-doc/html/examples/ar_est_1var.html", "unified_diff": "@@ -11,16 +11,16 @@\n     <link rel=\"stylesheet\" type=\"text/css\" href=\"../_static/graphviz.css\" />\n     <script id=\"documentation_options\" data-url_root=\"../\" src=\"../_static/documentation_options.js\"></script>\n     <script src=\"../_static/jquery.js\"></script>\n     <script src=\"../_static/underscore.js\"></script>\n     <script src=\"../_static/doctools.js\"></script>\n     <link rel=\"index\" title=\"Index\" href=\"../genindex.html\" />\n     <link rel=\"search\" title=\"Search\" href=\"../search.html\" />\n-    <link rel=\"next\" title=\"Multitaper spectral estimation\" href=\"multi_taper_spectral_estimation.html\" />\n-    <link rel=\"prev\" title=\"Multitaper coherence estimation\" href=\"multi_taper_coh.html\" />\n+    <link rel=\"next\" title=\"Auditory processing in grasshoppers\" href=\"grasshopper.html\" />\n+    <link rel=\"prev\" title=\"Multivariate auto-regressive modeling - 3 variables\" href=\"ar_est_3vars.html\" />\n   <meta name=\"keywords\" content=\"nipy, neuroimaging, python, neuroscience, time\n \t\t\t\t series\">\n \n   </head><body>\n <div style=\"background-color: white; text-align: left; padding: 10px 10px 15px 15px\">\n  <a href=\"../index.html\">\n   <img src=\"../_static/nitime-banner-bg.png\" alt=\"NIPY logo\"  border=\"0\" />\n@@ -32,18 +32,18 @@\n         <li class=\"right\" style=\"margin-right: 10px\">\n           <a href=\"../genindex.html\" title=\"General Index\"\n              accesskey=\"I\">index</a></li>\n         <li class=\"right\" >\n           <a href=\"../py-modindex.html\" title=\"Python Module Index\"\n              >modules</a> |</li>\n         <li class=\"right\" >\n-          <a href=\"multi_taper_spectral_estimation.html\" title=\"Multitaper spectral estimation\"\n+          <a href=\"grasshopper.html\" title=\"Auditory processing in grasshoppers\"\n              accesskey=\"N\">next</a> |</li>\n         <li class=\"right\" >\n-          <a href=\"multi_taper_coh.html\" title=\"Multitaper coherence estimation\"\n+          <a href=\"ar_est_3vars.html\" title=\"Multivariate auto-regressive modeling - 3 variables\"\n              accesskey=\"P\">previous</a> |</li>\n   <li><a href=\"../index.html\">Nitime Home</a> |&nbsp;</li>\n \n           <li class=\"nav-item nav-item-1\"><a href=\"../documentation.html\" >Nitime Documentation</a> &#187;</li>\n           <li class=\"nav-item nav-item-2\"><a href=\"index.html\" accesskey=\"U\">Examples</a> &#187;</li>\n         <li class=\"nav-item nav-item-this\"><a href=\"\">Neuroimaging in Python</a></li> \n       </ul>\n@@ -153,19 +153,19 @@\n \thref=\"http://mail.scipy.org/mailman/listinfo/nipy-devel\">Mailing List</a></li>\n     <li><a class=\"reference external\"\n \thref=\"http://nipy.sourceforge.net/software/license/index.html\">License</a></li>\n   </ul>\n \n \n   <h4>Previous topic</h4>\n-  <p class=\"topless\"><a href=\"multi_taper_coh.html\"\n-                        title=\"previous chapter\">Multitaper coherence estimation</a></p>\n+  <p class=\"topless\"><a href=\"ar_est_3vars.html\"\n+                        title=\"previous chapter\">Multivariate auto-regressive modeling - 3 variables</a></p>\n   <h4>Next topic</h4>\n-  <p class=\"topless\"><a href=\"multi_taper_spectral_estimation.html\"\n-                        title=\"next chapter\">Multitaper spectral estimation</a></p>\n+  <p class=\"topless\"><a href=\"grasshopper.html\"\n+                        title=\"next chapter\">Auditory processing in grasshoppers</a></p>\n <div id=\"searchbox\" style=\"display: none\" role=\"search\">\n   <h3 id=\"searchlabel\">Quick search</h3>\n     <div class=\"searchformwrapper\">\n     <form class=\"search\" action=\"../search.html\" method=\"get\">\n       <input type=\"text\" name=\"q\" aria-labelledby=\"searchlabel\" />\n       <input type=\"submit\" value=\"Go\" />\n     </form>\n@@ -182,18 +182,18 @@\n         <li class=\"right\" style=\"margin-right: 10px\">\n           <a href=\"../genindex.html\" title=\"General Index\"\n              >index</a></li>\n         <li class=\"right\" >\n           <a href=\"../py-modindex.html\" title=\"Python Module Index\"\n       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"unified_diff": "@@ -78,17 +78,17 @@\n     * News\n *** NIPY Community ***\n     * Community_Home\n     * NIPY_Projects\n     * Mailing_List\n     * License\n *** Previous topic ***\n-Multitaper_coherence_estimation\n+Multivariate_auto-regressive_modeling_-_3_variables\n *** Next topic ***\n-Multitaper_spectral_estimation\n+Auditory_processing_in_grasshoppers\n **** Quick search ****\n [q                   ] [Go]\n **** Navigation ****\n     * index\n     * modules |\n     * next |\n     * previous |\n"}]}, {"source1": "./usr/share/doc/python-nitime-doc/html/examples/ar_est_2vars.html", "source2": "./usr/share/doc/python-nitime-doc/html/examples/ar_est_2vars.html", "unified_diff": "@@ -11,16 +11,16 @@\n     <link rel=\"stylesheet\" type=\"text/css\" href=\"../_static/graphviz.css\" />\n     <script id=\"documentation_options\" data-url_root=\"../\" src=\"../_static/documentation_options.js\"></script>\n     <script src=\"../_static/jquery.js\"></script>\n     <script src=\"../_static/underscore.js\"></script>\n     <script src=\"../_static/doctools.js\"></script>\n     <link rel=\"index\" title=\"Index\" href=\"../genindex.html\" />\n     <link rel=\"search\" title=\"Search\" href=\"../search.html\" />\n-    <link rel=\"next\" title=\"Calculation of signal-to-noise and information\" href=\"snr_example.html\" />\n-    <link rel=\"prev\" title=\"Granger \u2018causality\u2019 of fMRI data\" href=\"granger_fmri.html\" />\n+    <link rel=\"next\" title=\"Fitting an MAR model: analyzer interface\" href=\"ar_model_fit.html\" />\n+    <link rel=\"prev\" title=\"Multitaper coherence estimation\" href=\"multi_taper_coh.html\" />\n   <meta name=\"keywords\" content=\"nipy, neuroimaging, python, neuroscience, time\n \t\t\t\t series\">\n \n   </head><body>\n <div style=\"background-color: white; text-align: left; padding: 10px 10px 15px 15px\">\n  <a href=\"../index.html\">\n   <img src=\"../_static/nitime-banner-bg.png\" alt=\"NIPY logo\"  border=\"0\" />\n@@ -32,18 +32,18 @@\n         <li class=\"right\" style=\"margin-right: 10px\">\n           <a href=\"../genindex.html\" title=\"General Index\"\n              accesskey=\"I\">index</a></li>\n         <li class=\"right\" >\n           <a href=\"../py-modindex.html\" title=\"Python Module Index\"\n              >modules</a> |</li>\n         <li class=\"right\" >\n-          <a href=\"snr_example.html\" title=\"Calculation of signal-to-noise and information\"\n+          <a href=\"ar_model_fit.html\" title=\"Fitting an MAR model: analyzer interface\"\n              accesskey=\"N\">next</a> |</li>\n         <li class=\"right\" >\n-          <a href=\"granger_fmri.html\" title=\"Granger \u2018causality\u2019 of fMRI data\"\n+          <a href=\"multi_taper_coh.html\" title=\"Multitaper coherence estimation\"\n              accesskey=\"P\">previous</a> |</li>\n   <li><a href=\"../index.html\">Nitime Home</a> |&nbsp;</li>\n \n           <li class=\"nav-item nav-item-1\"><a href=\"../documentation.html\" >Nitime Documentation</a> &#187;</li>\n           <li class=\"nav-item nav-item-2\"><a href=\"index.html\" accesskey=\"U\">Examples</a> &#187;</li>\n         <li class=\"nav-item nav-item-this\"><a href=\"\">Neuroimaging in Python</a></li> \n       </ul>\n@@ -318,19 +318,19 @@\n \thref=\"http://mail.scipy.org/mailman/listinfo/nipy-devel\">Mailing List</a></li>\n     <li><a class=\"reference external\"\n \thref=\"http://nipy.sourceforge.net/software/license/index.html\">License</a></li>\n   </ul>\n \n \n   <h4>Previous topic</h4>\n-  <p class=\"topless\"><a href=\"granger_fmri.html\"\n-                        title=\"previous chapter\">Granger \u2018causality\u2019 of fMRI data</a></p>\n+  <p class=\"topless\"><a href=\"multi_taper_coh.html\"\n+                        title=\"previous chapter\">Multitaper coherence estimation</a></p>\n   <h4>Next topic</h4>\n-  <p class=\"topless\"><a href=\"snr_example.html\"\n-                        title=\"next chapter\">Calculation of signal-to-noise and information</a></p>\n+  <p class=\"topless\"><a href=\"ar_model_fit.html\"\n+                        title=\"next chapter\">Fitting an MAR model: analyzer interface</a></p>\n <div id=\"searchbox\" style=\"display: none\" role=\"search\">\n   <h3 id=\"searchlabel\">Quick search</h3>\n     <div class=\"searchformwrapper\">\n     <form class=\"search\" action=\"../search.html\" method=\"get\">\n       <input type=\"text\" name=\"q\" aria-labelledby=\"searchlabel\" />\n       <input type=\"submit\" value=\"Go\" />\n     </form>\n@@ -347,18 +347,18 @@\n         <li class=\"right\" style=\"margin-right: 10px\">\n           <a href=\"../genindex.html\" title=\"General Index\"\n              >index</a></li>\n         <li class=\"right\" >\n           <a href=\"../py-modindex.html\" title=\"Python Module Index\"\n              >modules</a> |</li>\n         <li class=\"right\" >\n-          <a href=\"snr_example.html\" title=\"Calculation of 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Mailing_List\n     * License\n *** Previous topic ***\n-Granger_\u00e2\u0080\u0098causality\u00e2\u0080\u0099_of_fMRI_data\n+Multitaper_coherence_estimation\n *** Next topic ***\n-Calculation_of_signal-to-noise_and_information\n+Fitting_an_MAR_model:_analyzer_interface\n **** Quick search ****\n [q                   ] [Go]\n **** Navigation ****\n     * index\n     * modules |\n     * next |\n     * previous |\n"}]}, {"source1": "./usr/share/doc/python-nitime-doc/html/examples/ar_est_3vars.html", "source2": "./usr/share/doc/python-nitime-doc/html/examples/ar_est_3vars.html", "unified_diff": "@@ -11,16 +11,16 @@\n     <link rel=\"stylesheet\" type=\"text/css\" href=\"../_static/graphviz.css\" />\n     <script id=\"documentation_options\" data-url_root=\"../\" src=\"../_static/documentation_options.js\"></script>\n     <script src=\"../_static/jquery.js\"></script>\n     <script src=\"../_static/underscore.js\"></script>\n     <script src=\"../_static/doctools.js\"></script>\n     <link rel=\"index\" title=\"Index\" href=\"../genindex.html\" />\n     <link rel=\"search\" title=\"Search\" href=\"../search.html\" />\n-    <link rel=\"next\" title=\"Multitaper coherence estimation\" href=\"multi_taper_coh.html\" />\n-    <link rel=\"prev\" title=\"Coherency analysis of fMRI data\" href=\"resting_state_fmri.html\" />\n+    <link rel=\"next\" title=\"Fitting an AR model: algorithm module interface\" href=\"ar_est_1var.html\" />\n+    <link rel=\"prev\" title=\"Multitaper F-test for harmonic components\" href=\"mtm_harmonic_test.html\" />\n   <meta name=\"keywords\" content=\"nipy, neuroimaging, python, neuroscience, time\n \t\t\t\t series\">\n \n   </head><body>\n <div style=\"background-color: white; text-align: left; padding: 10px 10px 15px 15px\">\n  <a href=\"../index.html\">\n   <img src=\"../_static/nitime-banner-bg.png\" alt=\"NIPY logo\"  border=\"0\" />\n@@ -32,18 +32,18 @@\n         <li class=\"right\" style=\"margin-right: 10px\">\n           <a href=\"../genindex.html\" title=\"General Index\"\n              accesskey=\"I\">index</a></li>\n         <li class=\"right\" >\n           <a href=\"../py-modindex.html\" title=\"Python Module Index\"\n              >modules</a> |</li>\n         <li class=\"right\" >\n-          <a href=\"multi_taper_coh.html\" title=\"Multitaper coherence estimation\"\n+          <a href=\"ar_est_1var.html\" title=\"Fitting an AR model: algorithm module interface\"\n              accesskey=\"N\">next</a> |</li>\n         <li class=\"right\" >\n-          <a href=\"resting_state_fmri.html\" title=\"Coherency analysis of fMRI data\"\n+          <a href=\"mtm_harmonic_test.html\" title=\"Multitaper F-test for harmonic components\"\n              accesskey=\"P\">previous</a> |</li>\n   <li><a href=\"../index.html\">Nitime Home</a> |&nbsp;</li>\n \n           <li class=\"nav-item nav-item-1\"><a href=\"../documentation.html\" >Nitime Documentation</a> &#187;</li>\n           <li class=\"nav-item nav-item-2\"><a href=\"index.html\" accesskey=\"U\">Examples</a> &#187;</li>\n         <li class=\"nav-item nav-item-this\"><a href=\"\">Neuroimaging in Python</a></li> \n       </ul>\n@@ -259,19 +259,19 @@\n \thref=\"http://mail.scipy.org/mailman/listinfo/nipy-devel\">Mailing List</a></li>\n     <li><a class=\"reference external\"\n \thref=\"http://nipy.sourceforge.net/software/license/index.html\">License</a></li>\n   </ul>\n \n \n   <h4>Previous topic</h4>\n-  <p class=\"topless\"><a href=\"resting_state_fmri.html\"\n-                        title=\"previous chapter\">Coherency analysis of fMRI data</a></p>\n+  <p class=\"topless\"><a href=\"mtm_harmonic_test.html\"\n+                        title=\"previous chapter\">Multitaper F-test for harmonic components</a></p>\n   <h4>Next topic</h4>\n-  <p class=\"topless\"><a href=\"multi_taper_coh.html\"\n-                        title=\"next chapter\">Multitaper coherence estimation</a></p>\n+  <p class=\"topless\"><a href=\"ar_est_1var.html\"\n+                        title=\"next chapter\">Fitting an AR model: algorithm module interface</a></p>\n <div id=\"searchbox\" style=\"display: none\" role=\"search\">\n   <h3 id=\"searchlabel\">Quick search</h3>\n     <div class=\"searchformwrapper\">\n     <form class=\"search\" action=\"../search.html\" method=\"get\">\n       <input type=\"text\" name=\"q\" aria-labelledby=\"searchlabel\" />\n       <input type=\"submit\" value=\"Go\" />\n     </form>\n@@ -288,18 +288,18 @@\n         <li class=\"right\" style=\"margin-right: 10px\">\n           <a href=\"../genindex.html\" title=\"General Index\"\n              >index</a></li>\n         <li class=\"right\" >\n           <a href=\"../py-modindex.html\" title=\"Python Module Index\"\n              >modules</a> |</li>\n         <li class=\"right\" >\n-          <a href=\"multi_taper_coh.html\" title=\"Multitaper coherence estimation\"\n+          <a href=\"ar_est_1var.html\" title=\"Fitting an AR model: algorithm module interface\"\n              >next</a> |</li>\n         <li class=\"right\" >\n-          <a href=\"resting_state_fmri.html\" title=\"Coherency analysis of fMRI data\"\n+          <a href=\"mtm_harmonic_test.html\" title=\"Multitaper F-test for harmonic components\"\n              >previous</a> |</li>\n   <li><a href=\"../index.html\">Nitime Home</a> |&nbsp;</li>\n \n           <li class=\"nav-item nav-item-1\"><a href=\"../documentation.html\" >Nitime Documentation</a> &#187;</li>\n           <li class=\"nav-item nav-item-2\"><a href=\"index.html\" >Examples</a> &#187;</li>\n         <li class=\"nav-item nav-item-this\"><a href=\"\">Neuroimaging in Python</a></li> \n       </ul>\n", "details": [{"source1": "html2text {}", "source2": "html2text {}", "unified_diff": "@@ -165,17 +165,17 @@\n     * News\n *** NIPY Community ***\n     * Community_Home\n     * NIPY_Projects\n     * Mailing_List\n     * License\n *** Previous topic ***\n-Coherency_analysis_of_fMRI_data\n+Multitaper_F-test_for_harmonic_components\n *** Next topic ***\n-Multitaper_coherence_estimation\n+Fitting_an_AR_model:_algorithm_module_interface\n **** Quick search ****\n [q                   ] [Go]\n **** Navigation ****\n     * index\n     * modules |\n     * next |\n     * previous |\n"}]}, {"source1": "./usr/share/doc/python-nitime-doc/html/examples/ar_model_fit.html", "source2": "./usr/share/doc/python-nitime-doc/html/examples/ar_model_fit.html", "unified_diff": "@@ -11,16 +11,16 @@\n     <link rel=\"stylesheet\" type=\"text/css\" href=\"../_static/graphviz.css\" />\n     <script id=\"documentation_options\" data-url_root=\"../\" src=\"../_static/documentation_options.js\"></script>\n     <script src=\"../_static/jquery.js\"></script>\n     <script src=\"../_static/underscore.js\"></script>\n     <script src=\"../_static/doctools.js\"></script>\n     <link rel=\"index\" title=\"Index\" href=\"../genindex.html\" />\n     <link rel=\"search\" title=\"Search\" href=\"../search.html\" />\n-    <link rel=\"next\" title=\"Coherency analysis of fMRI data\" href=\"resting_state_fmri.html\" />\n-    <link rel=\"prev\" title=\"Event-related fMRI\" href=\"event_related_fmri.html\" />\n+    <link rel=\"next\" title=\"Filtering and normalizing fMRI data\" href=\"filtering_fmri.html\" />\n+    <link rel=\"prev\" title=\"Multivariate auto-regressive modeling\" href=\"ar_est_2vars.html\" />\n   <meta name=\"keywords\" content=\"nipy, neuroimaging, python, neuroscience, time\n \t\t\t\t series\">\n \n   </head><body>\n <div style=\"background-color: white; text-align: left; padding: 10px 10px 15px 15px\">\n  <a href=\"../index.html\">\n   <img src=\"../_static/nitime-banner-bg.png\" alt=\"NIPY logo\"  border=\"0\" />\n@@ -32,18 +32,18 @@\n         <li class=\"right\" style=\"margin-right: 10px\">\n           <a href=\"../genindex.html\" title=\"General Index\"\n              accesskey=\"I\">index</a></li>\n         <li class=\"right\" >\n           <a href=\"../py-modindex.html\" title=\"Python Module Index\"\n              >modules</a> |</li>\n         <li class=\"right\" >\n-          <a href=\"resting_state_fmri.html\" title=\"Coherency analysis of fMRI data\"\n+          <a href=\"filtering_fmri.html\" title=\"Filtering and normalizing fMRI data\"\n              accesskey=\"N\">next</a> |</li>\n         <li class=\"right\" >\n-          <a href=\"event_related_fmri.html\" title=\"Event-related fMRI\"\n+          <a href=\"ar_est_2vars.html\" title=\"Multivariate auto-regressive modeling\"\n              accesskey=\"P\">previous</a> |</li>\n   <li><a href=\"../index.html\">Nitime Home</a> |&nbsp;</li>\n \n           <li class=\"nav-item nav-item-1\"><a href=\"../documentation.html\" >Nitime Documentation</a> &#187;</li>\n           <li class=\"nav-item nav-item-2\"><a href=\"index.html\" accesskey=\"U\">Examples</a> &#187;</li>\n         <li class=\"nav-item nav-item-this\"><a href=\"\">Neuroimaging in Python</a></li> \n       </ul>\n@@ -193,19 +193,19 @@\n \thref=\"http://mail.scipy.org/mailman/listinfo/nipy-devel\">Mailing List</a></li>\n     <li><a class=\"reference external\"\n \thref=\"http://nipy.sourceforge.net/software/license/index.html\">License</a></li>\n   </ul>\n \n \n   <h4>Previous topic</h4>\n-  <p class=\"topless\"><a href=\"event_related_fmri.html\"\n-                        title=\"previous chapter\">Event-related fMRI</a></p>\n+  <p class=\"topless\"><a href=\"ar_est_2vars.html\"\n+                        title=\"previous chapter\">Multivariate auto-regressive modeling</a></p>\n   <h4>Next topic</h4>\n-  <p class=\"topless\"><a href=\"resting_state_fmri.html\"\n-                        title=\"next chapter\">Coherency analysis of fMRI data</a></p>\n+  <p class=\"topless\"><a href=\"filtering_fmri.html\"\n+                        title=\"next chapter\">Filtering and normalizing fMRI data</a></p>\n <div id=\"searchbox\" style=\"display: none\" role=\"search\">\n   <h3 id=\"searchlabel\">Quick search</h3>\n     <div class=\"searchformwrapper\">\n     <form class=\"search\" action=\"../search.html\" method=\"get\">\n       <input type=\"text\" name=\"q\" aria-labelledby=\"searchlabel\" />\n       <input type=\"submit\" value=\"Go\" />\n     </form>\n@@ -222,18 +222,18 @@\n         <li class=\"right\" style=\"margin-right: 10px\">\n           <a href=\"../genindex.html\" title=\"General Index\"\n              >index</a></li>\n         <li class=\"right\" >\n           <a href=\"../py-modindex.html\" title=\"Python Module Index\"\n              >modules</a> |</li>\n         <li class=\"right\" >\n-          <a href=\"resting_state_fmri.html\" title=\"Coherency analysis of fMRI data\"\n+          <a href=\"filtering_fmri.html\" title=\"Filtering and normalizing fMRI data\"\n              >next</a> |</li>\n         <li class=\"right\" >\n-          <a href=\"event_related_fmri.html\" title=\"Event-related fMRI\"\n+          <a href=\"ar_est_2vars.html\" title=\"Multivariate auto-regressive modeling\"\n              >previous</a> |</li>\n   <li><a href=\"../index.html\">Nitime Home</a> |&nbsp;</li>\n \n           <li class=\"nav-item nav-item-1\"><a href=\"../documentation.html\" >Nitime Documentation</a> &#187;</li>\n           <li class=\"nav-item nav-item-2\"><a href=\"index.html\" >Examples</a> &#187;</li>\n         <li class=\"nav-item nav-item-this\"><a href=\"\">Neuroimaging in Python</a></li> \n       </ul>\n", "details": [{"source1": "html2text {}", "source2": "html2text {}", "unified_diff": "@@ -106,17 +106,17 @@\n     * News\n *** NIPY Community ***\n     * Community_Home\n     * NIPY_Projects\n     * Mailing_List\n     * License\n *** Previous topic ***\n-Event-related_fMRI\n+Multivariate_auto-regressive_modeling\n *** Next topic ***\n-Coherency_analysis_of_fMRI_data\n+Filtering_and_normalizing_fMRI_data\n **** Quick search ****\n [q                   ] [Go]\n **** Navigation ****\n     * index\n     * modules |\n     * next |\n     * previous |\n"}]}, {"source1": "./usr/share/doc/python-nitime-doc/html/examples/event_related_fmri.html", "source2": "./usr/share/doc/python-nitime-doc/html/examples/event_related_fmri.html", "unified_diff": "@@ -11,16 +11,16 @@\n     <link rel=\"stylesheet\" type=\"text/css\" href=\"../_static/graphviz.css\" />\n     <script id=\"documentation_options\" data-url_root=\"../\" src=\"../_static/documentation_options.js\"></script>\n     <script src=\"../_static/jquery.js\"></script>\n     <script src=\"../_static/underscore.js\"></script>\n     <script src=\"../_static/doctools.js\"></script>\n     <link rel=\"index\" title=\"Index\" href=\"../genindex.html\" />\n     <link rel=\"search\" title=\"Search\" href=\"../search.html\" />\n-    <link rel=\"next\" title=\"Fitting an MAR model: analyzer interface\" href=\"ar_model_fit.html\" />\n-    <link rel=\"prev\" title=\"Auditory processing in grasshoppers\" href=\"grasshopper.html\" />\n+    <link rel=\"next\" title=\"Seed correlation/coherence with fMRI data\" href=\"seed_analysis.html\" />\n+    <link rel=\"prev\" title=\"Multitaper spectral estimation\" href=\"multi_taper_spectral_estimation.html\" />\n   <meta name=\"keywords\" content=\"nipy, neuroimaging, python, neuroscience, time\n \t\t\t\t series\">\n \n   </head><body>\n <div style=\"background-color: white; text-align: left; padding: 10px 10px 15px 15px\">\n  <a href=\"../index.html\">\n   <img src=\"../_static/nitime-banner-bg.png\" alt=\"NIPY logo\"  border=\"0\" />\n@@ -32,18 +32,18 @@\n         <li class=\"right\" style=\"margin-right: 10px\">\n           <a href=\"../genindex.html\" title=\"General Index\"\n              accesskey=\"I\">index</a></li>\n         <li class=\"right\" >\n           <a href=\"../py-modindex.html\" title=\"Python Module Index\"\n              >modules</a> |</li>\n         <li class=\"right\" >\n-          <a href=\"ar_model_fit.html\" title=\"Fitting an MAR model: analyzer interface\"\n+          <a href=\"seed_analysis.html\" title=\"Seed correlation/coherence with fMRI data\"\n              accesskey=\"N\">next</a> |</li>\n         <li class=\"right\" >\n-          <a href=\"grasshopper.html\" title=\"Auditory processing in grasshoppers\"\n+          <a href=\"multi_taper_spectral_estimation.html\" title=\"Multitaper spectral estimation\"\n              accesskey=\"P\">previous</a> |</li>\n   <li><a href=\"../index.html\">Nitime Home</a> |&nbsp;</li>\n \n           <li class=\"nav-item nav-item-1\"><a href=\"../documentation.html\" >Nitime Documentation</a> &#187;</li>\n           <li class=\"nav-item nav-item-2\"><a href=\"index.html\" accesskey=\"U\">Examples</a> &#187;</li>\n         <li class=\"nav-item nav-item-this\"><a href=\"\">Neuroimaging in Python</a></li> \n       </ul>\n@@ -186,19 +186,19 @@\n \thref=\"http://mail.scipy.org/mailman/listinfo/nipy-devel\">Mailing List</a></li>\n     <li><a class=\"reference external\"\n \thref=\"http://nipy.sourceforge.net/software/license/index.html\">License</a></li>\n   </ul>\n \n \n   <h4>Previous topic</h4>\n-  <p class=\"topless\"><a href=\"grasshopper.html\"\n-                        title=\"previous chapter\">Auditory processing in grasshoppers</a></p>\n+  <p class=\"topless\"><a href=\"multi_taper_spectral_estimation.html\"\n+                        title=\"previous chapter\">Multitaper spectral estimation</a></p>\n   <h4>Next topic</h4>\n-  <p class=\"topless\"><a href=\"ar_model_fit.html\"\n-                        title=\"next chapter\">Fitting an MAR model: analyzer interface</a></p>\n+  <p class=\"topless\"><a href=\"seed_analysis.html\"\n+                        title=\"next chapter\">Seed correlation/coherence with fMRI data</a></p>\n <div id=\"searchbox\" style=\"display: none\" role=\"search\">\n   <h3 id=\"searchlabel\">Quick search</h3>\n     <div class=\"searchformwrapper\">\n     <form class=\"search\" action=\"../search.html\" method=\"get\">\n       <input type=\"text\" name=\"q\" aria-labelledby=\"searchlabel\" />\n       <input type=\"submit\" value=\"Go\" />\n     </form>\n@@ -215,18 +215,18 @@\n         <li class=\"right\" style=\"margin-right: 10px\">\n           <a href=\"../genindex.html\" title=\"General Index\"\n              >index</a></li>\n         <li class=\"right\" >\n           <a href=\"../py-modindex.html\" title=\"Python Module Index\"\n              >modules</a> |</li>\n         <li class=\"right\" >\n-          <a href=\"ar_model_fit.html\" title=\"Fitting an MAR model: analyzer interface\"\n+          <a href=\"seed_analysis.html\" title=\"Seed correlation/coherence with fMRI data\"\n              >next</a> |</li>\n         <li class=\"right\" >\n-          <a href=\"grasshopper.html\" title=\"Auditory processing in grasshoppers\"\n+          <a href=\"multi_taper_spectral_estimation.html\" title=\"Multitaper spectral estimation\"\n              >previous</a> |</li>\n   <li><a href=\"../index.html\">Nitime Home</a> |&nbsp;</li>\n \n           <li class=\"nav-item nav-item-1\"><a href=\"../documentation.html\" >Nitime Documentation</a> &#187;</li>\n           <li class=\"nav-item nav-item-2\"><a href=\"index.html\" >Examples</a> &#187;</li>\n         <li class=\"nav-item nav-item-this\"><a href=\"\">Neuroimaging in Python</a></li> \n       </ul>\n", "details": [{"source1": "html2text {}", "source2": "html2text {}", "unified_diff": "@@ -101,17 +101,17 @@\n     * News\n *** NIPY Community ***\n     * Community_Home\n     * NIPY_Projects\n     * Mailing_List\n     * License\n *** Previous topic ***\n-Auditory_processing_in_grasshoppers\n+Multitaper_spectral_estimation\n *** Next topic ***\n-Fitting_an_MAR_model:_analyzer_interface\n+Seed_correlation/coherence_with_fMRI_data\n **** Quick search ****\n [q                   ] [Go]\n **** Navigation ****\n     * index\n     * modules |\n     * next |\n     * previous |\n"}]}, {"source1": "./usr/share/doc/python-nitime-doc/html/examples/filtering_fmri.html", "source2": "./usr/share/doc/python-nitime-doc/html/examples/filtering_fmri.html", "unified_diff": "@@ -11,16 +11,16 @@\n     <link rel=\"stylesheet\" type=\"text/css\" href=\"../_static/graphviz.css\" />\n     <script id=\"documentation_options\" data-url_root=\"../\" src=\"../_static/documentation_options.js\"></script>\n     <script src=\"../_static/jquery.js\"></script>\n     <script src=\"../_static/underscore.js\"></script>\n     <script src=\"../_static/doctools.js\"></script>\n     <link rel=\"index\" title=\"Index\" href=\"../genindex.html\" />\n     <link rel=\"search\" title=\"Search\" href=\"../search.html\" />\n-    <link rel=\"next\" title=\"Multitaper method for baseband demodulation\" href=\"mtm_baseband_power.html\" />\n-    <link rel=\"prev\" title=\"Examples\" href=\"index.html\" />\n+    <link rel=\"next\" title=\"Multitaper F-test for harmonic components\" href=\"mtm_harmonic_test.html\" />\n+    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           accesskey=\"N\">next</a> |</li>\n         <li class=\"right\" >\n-          <a href=\"index.html\" title=\"Examples\"\n+          <a href=\"ar_model_fit.html\" title=\"Fitting an MAR model: analyzer interface\"\n              accesskey=\"P\">previous</a> |</li>\n   <li><a href=\"../index.html\">Nitime Home</a> |&nbsp;</li>\n \n           <li class=\"nav-item nav-item-1\"><a href=\"../documentation.html\" >Nitime Documentation</a> &#187;</li>\n           <li class=\"nav-item nav-item-2\"><a href=\"index.html\" accesskey=\"U\">Examples</a> &#187;</li>\n         <li class=\"nav-item nav-item-this\"><a href=\"\">Neuroimaging in Python</a></li> \n       </ul>\n@@ -427,19 +427,19 @@\n \thref=\"http://mail.scipy.org/mailman/listinfo/nipy-devel\">Mailing List</a></li>\n     <li><a class=\"reference external\"\n \thref=\"http://nipy.sourceforge.net/software/license/index.html\">License</a></li>\n   </ul>\n \n \n   <h4>Previous topic</h4>\n-  <p class=\"topless\"><a href=\"index.html\"\n-                        title=\"previous chapter\">Examples</a></p>\n+  <p class=\"topless\"><a href=\"ar_model_fit.html\"\n+                        title=\"previous chapter\">Fitting an MAR model: analyzer interface</a></p>\n   <h4>Next topic</h4>\n-  <p class=\"topless\"><a href=\"mtm_baseband_power.html\"\n-                        title=\"next chapter\">Multitaper method for baseband demodulation</a></p>\n+  <p class=\"topless\"><a href=\"mtm_harmonic_test.html\"\n+                        title=\"next chapter\">Multitaper F-test for harmonic components</a></p>\n <div id=\"searchbox\" style=\"display: none\" role=\"search\">\n   <h3 id=\"searchlabel\">Quick search</h3>\n     <div class=\"searchformwrapper\">\n     <form class=\"search\" action=\"../search.html\" method=\"get\">\n       <input type=\"text\" name=\"q\" aria-labelledby=\"searchlabel\" />\n       <input type=\"submit\" value=\"Go\" />\n     </form>\n@@ -456,18 +456,18 @@\n         <li class=\"right\" style=\"margin-right: 10px\">\n           <a href=\"../genindex.html\" title=\"General Index\"\n              >index</a></li>\n         <li class=\"right\" >\n           <a href=\"../py-modindex.html\" title=\"Python Module Index\"\n              >modules</a> |</li>\n         <li class=\"right\" >\n-          <a href=\"mtm_baseband_power.html\" title=\"Multitaper method for baseband demodulation\"\n+          <a href=\"mtm_harmonic_test.html\" title=\"Multitaper F-test for harmonic components\"\n              >next</a> |</li>\n         <li class=\"right\" >\n-          <a href=\"index.html\" title=\"Examples\"\n+          <a href=\"ar_model_fit.html\" title=\"Fitting an MAR model: analyzer interface\"\n              >previous</a> |</li>\n   <li><a href=\"../index.html\">Nitime Home</a> |&nbsp;</li>\n \n           <li class=\"nav-item nav-item-1\"><a href=\"../documentation.html\" >Nitime Documentation</a> &#187;</li>\n           <li class=\"nav-item nav-item-2\"><a href=\"index.html\" >Examples</a> &#187;</li>\n         <li class=\"nav-item nav-item-this\"><a href=\"\">Neuroimaging in Python</a></li> \n       </ul>\n", "details": [{"source1": "html2text {}", "source2": "html2text {}", "unified_diff": "@@ -324,17 +324,17 @@\n     * News\n *** NIPY Community ***\n     * Community_Home\n     * NIPY_Projects\n     * Mailing_List\n     * License\n *** Previous topic ***\n-Examples\n+Fitting_an_MAR_model:_analyzer_interface\n *** Next topic ***\n-Multitaper_method_for_baseband_demodulation\n+Multitaper_F-test_for_harmonic_components\n **** Quick search ****\n [q                   ] [Go]\n **** Navigation ****\n     * index\n     * modules |\n     * next |\n     * previous |\n"}]}, {"source1": "./usr/share/doc/python-nitime-doc/html/examples/granger_fmri.html", "source2": "./usr/share/doc/python-nitime-doc/html/examples/granger_fmri.html", "unified_diff": "@@ -11,15 +11,15 @@\n     <link rel=\"stylesheet\" type=\"text/css\" href=\"../_static/graphviz.css\" />\n     <script id=\"documentation_options\" data-url_root=\"../\" src=\"../_static/documentation_options.js\"></script>\n     <script src=\"../_static/jquery.js\"></script>\n     <script src=\"../_static/underscore.js\"></script>\n     <script src=\"../_static/doctools.js\"></script>\n     <link rel=\"index\" title=\"Index\" href=\"../genindex.html\" />\n     <link rel=\"search\" title=\"Search\" href=\"../search.html\" />\n-    <link rel=\"next\" title=\"Multivariate auto-regressive modeling\" href=\"ar_est_2vars.html\" />\n+    <link rel=\"next\" title=\"Multitaper coherence estimation\" href=\"multi_taper_coh.html\" />\n     <link rel=\"prev\" title=\"Multitaper method for baseband demodulation\" href=\"mtm_baseband_power.html\" />\n   <meta name=\"keywords\" content=\"nipy, neuroimaging, python, neuroscience, time\n \t\t\t\t series\">\n \n   </head><body>\n <div style=\"background-color: white; text-align: left; padding: 10px 10px 15px 15px\">\n  <a href=\"../index.html\">\n@@ -32,15 +32,15 @@\n         <li class=\"right\" style=\"margin-right: 10px\">\n           <a href=\"../genindex.html\" title=\"General Index\"\n              accesskey=\"I\">index</a></li>\n         <li class=\"right\" >\n           <a href=\"../py-modindex.html\" title=\"Python Module Index\"\n              >modules</a> |</li>\n         <li class=\"right\" >\n-          <a href=\"ar_est_2vars.html\" title=\"Multivariate auto-regressive modeling\"\n+          <a href=\"multi_taper_coh.html\" title=\"Multitaper coherence estimation\"\n              accesskey=\"N\">next</a> |</li>\n         <li class=\"right\" >\n           <a href=\"mtm_baseband_power.html\" title=\"Multitaper method for baseband demodulation\"\n              accesskey=\"P\">previous</a> |</li>\n   <li><a href=\"../index.html\">Nitime Home</a> |&nbsp;</li>\n \n           <li class=\"nav-item nav-item-1\"><a href=\"../documentation.html\" >Nitime Documentation</a> &#187;</li>\n@@ -261,16 +261,16 @@\n </li>\n </ul>\n \n   <h4>Previous topic</h4>\n   <p class=\"topless\"><a href=\"mtm_baseband_power.html\"\n                         title=\"previous chapter\">Multitaper method for baseband demodulation</a></p>\n   <h4>Next topic</h4>\n-  <p class=\"topless\"><a href=\"ar_est_2vars.html\"\n-                        title=\"next chapter\">Multivariate auto-regressive modeling</a></p>\n+  <p class=\"topless\"><a href=\"multi_taper_coh.html\"\n+                        title=\"next chapter\">Multitaper coherence estimation</a></p>\n <div id=\"searchbox\" style=\"display: none\" role=\"search\">\n   <h3 id=\"searchlabel\">Quick search</h3>\n     <div class=\"searchformwrapper\">\n     <form class=\"search\" action=\"../search.html\" method=\"get\">\n       <input type=\"text\" name=\"q\" aria-labelledby=\"searchlabel\" />\n       <input type=\"submit\" value=\"Go\" />\n     </form>\n@@ -287,15 +287,15 @@\n         <li class=\"right\" style=\"margin-right: 10px\">\n           <a href=\"../genindex.html\" title=\"General Index\"\n              >index</a></li>\n         <li class=\"right\" >\n           <a href=\"../py-modindex.html\" title=\"Python Module Index\"\n              >modules</a> |</li>\n         <li class=\"right\" >\n-          <a href=\"ar_est_2vars.html\" title=\"Multivariate auto-regressive modeling\"\n+          <a href=\"multi_taper_coh.html\" title=\"Multitaper coherence estimation\"\n              >next</a> |</li>\n         <li class=\"right\" >\n           <a href=\"mtm_baseband_power.html\" title=\"Multitaper method for baseband demodulation\"\n              >previous</a> |</li>\n   <li><a href=\"../index.html\">Nitime Home</a> |&nbsp;</li>\n \n           <li class=\"nav-item nav-item-1\"><a href=\"../documentation.html\" >Nitime Documentation</a> &#187;</li>\n", "details": [{"source1": "html2text {}", "source2": "html2text {}", "unified_diff": "@@ -160,15 +160,15 @@\n     * License\n **** Table_of_Contents ****\n     * Granger_\u00e2\u0080\u0098causality\u00e2\u0080\u0099_of_fMRI_data\n           o References\n *** Previous topic ***\n Multitaper_method_for_baseband_demodulation\n *** Next topic ***\n-Multivariate_auto-regressive_modeling\n+Multitaper_coherence_estimation\n **** Quick search ****\n [q                   ] [Go]\n **** Navigation ****\n     * index\n     * modules |\n     * next |\n     * previous |\n"}]}, {"source1": "./usr/share/doc/python-nitime-doc/html/examples/grasshopper.html", "source2": "./usr/share/doc/python-nitime-doc/html/examples/grasshopper.html", "unified_diff": "@@ -11,16 +11,16 @@\n     <link rel=\"stylesheet\" type=\"text/css\" href=\"../_static/graphviz.css\" />\n     <script id=\"documentation_options\" data-url_root=\"../\" src=\"../_static/documentation_options.js\"></script>\n     <script src=\"../_static/jquery.js\"></script>\n     <script src=\"../_static/underscore.js\"></script>\n     <script src=\"../_static/doctools.js\"></script>\n     <link rel=\"index\" title=\"Index\" href=\"../genindex.html\" />\n     <link rel=\"search\" title=\"Search\" href=\"../search.html\" />\n-    <link rel=\"next\" title=\"Event-related fMRI\" href=\"event_related_fmri.html\" />\n-    <link rel=\"prev\" title=\"Calculation of signal-to-noise and information\" href=\"snr_example.html\" />\n+    <link rel=\"next\" title=\"Calculation of signal-to-noise and information\" href=\"snr_example.html\" />\n+    <link rel=\"prev\" title=\"Fitting an AR model: algorithm module interface\" href=\"ar_est_1var.html\" />\n   <meta name=\"keywords\" content=\"nipy, neuroimaging, python, neuroscience, time\n \t\t\t\t series\">\n \n   </head><body>\n <div style=\"background-color: white; text-align: left; padding: 10px 10px 15px 15px\">\n  <a href=\"../index.html\">\n   <img src=\"../_static/nitime-banner-bg.png\" alt=\"NIPY logo\"  border=\"0\" />\n@@ -32,18 +32,18 @@\n         <li class=\"right\" style=\"margin-right: 10px\">\n           <a href=\"../genindex.html\" title=\"General Index\"\n              accesskey=\"I\">index</a></li>\n         <li class=\"right\" >\n           <a href=\"../py-modindex.html\" title=\"Python Module Index\"\n              >modules</a> |</li>\n         <li class=\"right\" >\n-          <a href=\"event_related_fmri.html\" title=\"Event-related fMRI\"\n+          <a href=\"snr_example.html\" title=\"Calculation of signal-to-noise and information\"\n              accesskey=\"N\">next</a> |</li>\n         <li class=\"right\" >\n-          <a href=\"snr_example.html\" title=\"Calculation of signal-to-noise and information\"\n+          <a href=\"ar_est_1var.html\" title=\"Fitting an AR model: algorithm module interface\"\n              accesskey=\"P\">previous</a> |</li>\n   <li><a href=\"../index.html\">Nitime Home</a> |&nbsp;</li>\n \n           <li class=\"nav-item nav-item-1\"><a href=\"../documentation.html\" >Nitime Documentation</a> &#187;</li>\n           <li class=\"nav-item nav-item-2\"><a href=\"index.html\" accesskey=\"U\">Examples</a> &#187;</li>\n         <li class=\"nav-item nav-item-this\"><a href=\"\">Neuroimaging in Python</a></li> \n       </ul>\n@@ -229,19 +229,19 @@\n \thref=\"http://mail.scipy.org/mailman/listinfo/nipy-devel\">Mailing List</a></li>\n     <li><a class=\"reference external\"\n \thref=\"http://nipy.sourceforge.net/software/license/index.html\">License</a></li>\n   </ul>\n \n \n   <h4>Previous topic</h4>\n-  <p class=\"topless\"><a href=\"snr_example.html\"\n-                        title=\"previous chapter\">Calculation of signal-to-noise and information</a></p>\n+  <p class=\"topless\"><a href=\"ar_est_1var.html\"\n+                        title=\"previous chapter\">Fitting an AR model: algorithm module interface</a></p>\n   <h4>Next topic</h4>\n-  <p class=\"topless\"><a href=\"event_related_fmri.html\"\n-                        title=\"next chapter\">Event-related fMRI</a></p>\n+  <p class=\"topless\"><a href=\"snr_example.html\"\n+                        title=\"next chapter\">Calculation of signal-to-noise and information</a></p>\n <div id=\"searchbox\" style=\"display: none\" role=\"search\">\n   <h3 id=\"searchlabel\">Quick search</h3>\n     <div class=\"searchformwrapper\">\n     <form class=\"search\" action=\"../search.html\" method=\"get\">\n       <input type=\"text\" name=\"q\" aria-labelledby=\"searchlabel\" />\n       <input type=\"submit\" value=\"Go\" />\n     </form>\n@@ -258,18 +258,18 @@\n         <li class=\"right\" style=\"margin-right: 10px\">\n           <a href=\"../genindex.html\" title=\"General Index\"\n              >index</a></li>\n         <li class=\"right\" >\n           <a href=\"../py-modindex.html\" title=\"Python Module Index\"\n              >modules</a> |</li>\n         <li class=\"right\" >\n-          <a href=\"event_related_fmri.html\" title=\"Event-related fMRI\"\n+          <a href=\"snr_example.html\" title=\"Calculation of signal-to-noise and information\"\n              >next</a> |</li>\n         <li class=\"right\" >\n-          <a href=\"snr_example.html\" title=\"Calculation of signal-to-noise and information\"\n+          <a href=\"ar_est_1var.html\" title=\"Fitting an AR model: algorithm module interface\"\n              >previous</a> |</li>\n   <li><a href=\"../index.html\">Nitime Home</a> |&nbsp;</li>\n \n           <li class=\"nav-item nav-item-1\"><a href=\"../documentation.html\" >Nitime Documentation</a> &#187;</li>\n           <li class=\"nav-item nav-item-2\"><a href=\"index.html\" >Examples</a> &#187;</li>\n         <li class=\"nav-item nav-item-this\"><a href=\"\">Neuroimaging in Python</a></li> \n       </ul>\n", "details": [{"source1": "html2text {}", "source2": "html2text {}", "unified_diff": "@@ -137,17 +137,17 @@\n     * News\n *** NIPY Community ***\n     * Community_Home\n     * NIPY_Projects\n     * Mailing_List\n     * License\n *** Previous topic ***\n-Calculation_of_signal-to-noise_and_information\n+Fitting_an_AR_model:_algorithm_module_interface\n *** Next topic ***\n-Event-related_fMRI\n+Calculation_of_signal-to-noise_and_information\n **** Quick search ****\n [q                   ] [Go]\n **** Navigation ****\n     * index\n     * modules |\n     * next |\n     * previous |\n"}]}, {"source1": "./usr/share/doc/python-nitime-doc/html/examples/index.html", "source2": "./usr/share/doc/python-nitime-doc/html/examples/index.html", "unified_diff": "@@ -11,15 +11,15 @@\n     <link rel=\"stylesheet\" type=\"text/css\" href=\"../_static/graphviz.css\" />\n     <script id=\"documentation_options\" data-url_root=\"../\" src=\"../_static/documentation_options.js\"></script>\n     <script src=\"../_static/jquery.js\"></script>\n     <script src=\"../_static/underscore.js\"></script>\n     <script src=\"../_static/doctools.js\"></script>\n     <link rel=\"index\" title=\"Index\" href=\"../genindex.html\" />\n     <link rel=\"search\" title=\"Search\" href=\"../search.html\" />\n-    <link rel=\"next\" title=\"Filtering and normalizing fMRI data\" href=\"filtering_fmri.html\" />\n+    <link rel=\"next\" title=\"Multitaper spectral estimation\" href=\"multi_taper_spectral_estimation.html\" />\n     <link rel=\"prev\" title=\"Release notes for nitime version 0.3\" href=\"../whatsnew/version0.3.html\" />\n   <meta name=\"keywords\" content=\"nipy, neuroimaging, python, neuroscience, time\n \t\t\t\t series\">\n \n   </head><body>\n <div style=\"background-color: white; text-align: left; padding: 10px 10px 15px 15px\">\n  <a href=\"../index.html\">\n@@ -32,15 +32,15 @@\n         <li class=\"right\" style=\"margin-right: 10px\">\n           <a href=\"../genindex.html\" title=\"General Index\"\n              accesskey=\"I\">index</a></li>\n         <li class=\"right\" >\n           <a href=\"../py-modindex.html\" title=\"Python Module Index\"\n              >modules</a> |</li>\n         <li class=\"right\" >\n-          <a href=\"filtering_fmri.html\" title=\"Filtering and normalizing fMRI data\"\n+          <a href=\"multi_taper_spectral_estimation.html\" title=\"Multitaper spectral estimation\"\n              accesskey=\"N\">next</a> |</li>\n         <li class=\"right\" >\n           <a href=\"../whatsnew/version0.3.html\" title=\"Release notes for nitime version 0.3\"\n              accesskey=\"P\">previous</a> |</li>\n   <li><a href=\"../index.html\">Nitime Home</a> |&nbsp;</li>\n \n           <li class=\"nav-item nav-item-1\"><a href=\"../documentation.html\" accesskey=\"U\">Nitime Documentation</a> &#187;</li>\n@@ -65,36 +65,36 @@\n <p>If you want to replicate a particular analysis or visualization, simply copy\n the relevant \u201c.py\u201d script from the source distribution, or download the script\n using the link at the bottom of each page.</p>\n <p>Thanks to the developers of <a class=\"reference external\" href=\"http://www.pymvpa.org\">PyMVPA</a> for designing the software which enables us\n to provide these documented examples!</p>\n <div class=\"toctree-wrapper compound\">\n <ul>\n-<li class=\"toctree-l1\"><a class=\"reference internal\" href=\"filtering_fmri.html\">Filtering and normalizing fMRI data</a></li>\n+<li class=\"toctree-l1\"><a class=\"reference internal\" href=\"multi_taper_spectral_estimation.html\">Multitaper spectral estimation</a></li>\n+<li class=\"toctree-l1\"><a class=\"reference internal\" href=\"event_related_fmri.html\">Event-related fMRI</a></li>\n+<li class=\"toctree-l1\"><a class=\"reference internal\" href=\"seed_analysis.html\">Seed correlation/coherence with fMRI data</a></li>\n <li class=\"toctree-l1\"><a class=\"reference internal\" href=\"mtm_baseband_power.html\">Multitaper method for baseband demodulation</a><ul>\n <li class=\"toctree-l2\"><a class=\"reference internal\" href=\"mtm_baseband_power.html#test-1\">Test 1</a></li>\n <li class=\"toctree-l2\"><a class=\"reference internal\" href=\"mtm_baseband_power.html#test-2\">Test 2</a></li>\n </ul>\n </li>\n <li class=\"toctree-l1\"><a class=\"reference internal\" href=\"granger_fmri.html\">Granger \u2018causality\u2019 of fMRI data</a><ul>\n <li class=\"toctree-l2\"><a class=\"reference internal\" href=\"granger_fmri.html#references\">References</a></li>\n </ul>\n </li>\n+<li class=\"toctree-l1\"><a class=\"reference internal\" href=\"multi_taper_coh.html\">Multitaper coherence estimation</a></li>\n <li class=\"toctree-l1\"><a class=\"reference internal\" href=\"ar_est_2vars.html\">Multivariate auto-regressive modeling</a></li>\n-<li class=\"toctree-l1\"><a class=\"reference internal\" href=\"snr_example.html\">Calculation of signal-to-noise and information</a></li>\n-<li class=\"toctree-l1\"><a class=\"reference internal\" href=\"grasshopper.html\">Auditory processing in grasshoppers</a></li>\n-<li class=\"toctree-l1\"><a class=\"reference internal\" href=\"event_related_fmri.html\">Event-related fMRI</a></li>\n <li class=\"toctree-l1\"><a class=\"reference internal\" href=\"ar_model_fit.html\">Fitting an MAR model: analyzer interface</a></li>\n-<li class=\"toctree-l1\"><a class=\"reference internal\" href=\"resting_state_fmri.html\">Coherency analysis of fMRI data</a></li>\n+<li class=\"toctree-l1\"><a class=\"reference internal\" href=\"filtering_fmri.html\">Filtering and normalizing fMRI data</a></li>\n+<li class=\"toctree-l1\"><a class=\"reference internal\" href=\"mtm_harmonic_test.html\">Multitaper F-test for harmonic components</a></li>\n <li class=\"toctree-l1\"><a class=\"reference internal\" href=\"ar_est_3vars.html\">Multivariate auto-regressive modeling - 3 variables</a></li>\n-<li class=\"toctree-l1\"><a class=\"reference internal\" href=\"multi_taper_coh.html\">Multitaper coherence estimation</a></li>\n <li class=\"toctree-l1\"><a class=\"reference internal\" href=\"ar_est_1var.html\">Fitting an AR model: algorithm module interface</a></li>\n-<li class=\"toctree-l1\"><a class=\"reference internal\" href=\"multi_taper_spectral_estimation.html\">Multitaper spectral estimation</a></li>\n-<li class=\"toctree-l1\"><a class=\"reference internal\" href=\"mtm_harmonic_test.html\">Multitaper F-test for harmonic components</a></li>\n-<li class=\"toctree-l1\"><a class=\"reference internal\" href=\"seed_analysis.html\">Seed correlation/coherence with fMRI data</a></li>\n+<li class=\"toctree-l1\"><a class=\"reference internal\" href=\"grasshopper.html\">Auditory processing in grasshoppers</a></li>\n+<li class=\"toctree-l1\"><a class=\"reference internal\" href=\"snr_example.html\">Calculation of signal-to-noise and information</a></li>\n+<li class=\"toctree-l1\"><a class=\"reference internal\" href=\"resting_state_fmri.html\">Coherency analysis of fMRI data</a></li>\n </ul>\n </div>\n </div>\n \n \n             <div class=\"clearer\"></div>\n           </div>\n@@ -124,16 +124,16 @@\n   </ul>\n \n \n   <h4>Previous topic</h4>\n   <p class=\"topless\"><a href=\"../whatsnew/version0.3.html\"\n                         title=\"previous chapter\">Release notes for nitime version 0.3</a></p>\n   <h4>Next topic</h4>\n-  <p class=\"topless\"><a href=\"filtering_fmri.html\"\n-                        title=\"next chapter\">Filtering and normalizing fMRI data</a></p>\n+  <p class=\"topless\"><a href=\"multi_taper_spectral_estimation.html\"\n+                        title=\"next chapter\">Multitaper spectral estimation</a></p>\n <div id=\"searchbox\" style=\"display: none\" role=\"search\">\n   <h3 id=\"searchlabel\">Quick search</h3>\n     <div class=\"searchformwrapper\">\n     <form class=\"search\" action=\"../search.html\" method=\"get\">\n       <input type=\"text\" name=\"q\" aria-labelledby=\"searchlabel\" />\n       <input type=\"submit\" value=\"Go\" />\n     </form>\n@@ -150,15 +150,15 @@\n         <li class=\"right\" style=\"margin-right: 10px\">\n           <a href=\"../genindex.html\" title=\"General Index\"\n              >index</a></li>\n         <li class=\"right\" >\n           <a href=\"../py-modindex.html\" title=\"Python Module Index\"\n              >modules</a> |</li>\n         <li class=\"right\" >\n-          <a href=\"filtering_fmri.html\" title=\"Filtering and normalizing fMRI data\"\n+          <a href=\"multi_taper_spectral_estimation.html\" title=\"Multitaper spectral estimation\"\n              >next</a> |</li>\n         <li class=\"right\" >\n           <a href=\"../whatsnew/version0.3.html\" title=\"Release notes for nitime version 0.3\"\n              >previous</a> |</li>\n   <li><a href=\"../index.html\">Nitime Home</a> |&nbsp;</li>\n \n           <li class=\"nav-item nav-item-1\"><a href=\"../documentation.html\" >Nitime Documentation</a> &#187;</li>\n", "details": [{"source1": "html2text {}", "source2": "html2text {}", "unified_diff": "@@ -25,45 +25,45 @@\n functioning python scripts, which are available as part of the source\n distribution in the doc/examples folder.\n If you want to replicate a particular analysis or visualization, simply copy\n the relevant \u00e2\u0080\u009c.py\u00e2\u0080\u009d script from the source distribution, or download the\n script using the link at the bottom of each page.\n Thanks to the developers of PyMVPA for designing the software which enables us\n to provide these documented examples!\n-    * Filtering_and_normalizing_fMRI_data\n+    * Multitaper_spectral_estimation\n+    * Event-related_fMRI\n+    * Seed_correlation/coherence_with_fMRI_data\n     * Multitaper_method_for_baseband_demodulation\n           o Test_1\n           o Test_2\n     * Granger_\u00e2\u0080\u0098causality\u00e2\u0080\u0099_of_fMRI_data\n           o References\n+    * Multitaper_coherence_estimation\n     * Multivariate_auto-regressive_modeling\n-    * Calculation_of_signal-to-noise_and_information\n-    * Auditory_processing_in_grasshoppers\n-    * Event-related_fMRI\n     * Fitting_an_MAR_model:_analyzer_interface\n-    * Coherency_analysis_of_fMRI_data\n+    * Filtering_and_normalizing_fMRI_data\n+    * Multitaper_F-test_for_harmonic_components\n     * Multivariate_auto-regressive_modeling_-_3_variables\n-    * Multitaper_coherence_estimation\n     * Fitting_an_AR_model:_algorithm_module_interface\n-    * Multitaper_spectral_estimation\n-    * Multitaper_F-test_for_harmonic_components\n-    * Seed_correlation/coherence_with_fMRI_data\n+    * Auditory_processing_in_grasshoppers\n+    * Calculation_of_signal-to-noise_and_information\n+    * Coherency_analysis_of_fMRI_data\n *** Site Navigation ***\n     * Documentation\n     * Development\n     * News\n *** NIPY Community ***\n     * Community_Home\n     * NIPY_Projects\n     * Mailing_List\n     * License\n *** Previous topic ***\n Release_notes_for_nitime_version_0.3\n *** Next topic ***\n-Filtering_and_normalizing_fMRI_data\n+Multitaper_spectral_estimation\n **** Quick search ****\n [q                   ] [Go]\n **** Navigation ****\n     * index\n     * modules |\n     * next |\n     * previous |\n"}]}, {"source1": "./usr/share/doc/python-nitime-doc/html/examples/mtm_baseband_power.html", "source2": "./usr/share/doc/python-nitime-doc/html/examples/mtm_baseband_power.html", "unified_diff": "@@ -12,15 +12,15 @@\n     <script id=\"documentation_options\" data-url_root=\"../\" src=\"../_static/documentation_options.js\"></script>\n     <script src=\"../_static/jquery.js\"></script>\n     <script src=\"../_static/underscore.js\"></script>\n     <script src=\"../_static/doctools.js\"></script>\n     <link rel=\"index\" title=\"Index\" href=\"../genindex.html\" />\n     <link rel=\"search\" title=\"Search\" href=\"../search.html\" />\n     <link rel=\"next\" title=\"Granger \u2018causality\u2019 of fMRI data\" href=\"granger_fmri.html\" />\n-    <link rel=\"prev\" title=\"Filtering and normalizing fMRI data\" href=\"filtering_fmri.html\" />\n+    <link rel=\"prev\" title=\"Seed correlation/coherence with fMRI data\" href=\"seed_analysis.html\" />\n   <meta name=\"keywords\" content=\"nipy, neuroimaging, python, neuroscience, time\n \t\t\t\t series\">\n \n   </head><body>\n <div style=\"background-color: white; text-align: left; padding: 10px 10px 15px 15px\">\n  <a href=\"../index.html\">\n   <img src=\"../_static/nitime-banner-bg.png\" alt=\"NIPY logo\"  border=\"0\" />\n@@ -35,15 +35,15 @@\n         <li class=\"right\" >\n           <a href=\"../py-modindex.html\" title=\"Python Module Index\"\n              >modules</a> |</li>\n         <li class=\"right\" >\n           <a href=\"granger_fmri.html\" title=\"Granger \u2018causality\u2019 of fMRI data\"\n              accesskey=\"N\">next</a> |</li>\n         <li class=\"right\" >\n-          <a href=\"filtering_fmri.html\" title=\"Filtering and normalizing fMRI data\"\n+          <a href=\"seed_analysis.html\" title=\"Seed correlation/coherence with fMRI data\"\n              accesskey=\"P\">previous</a> |</li>\n   <li><a href=\"../index.html\">Nitime Home</a> |&nbsp;</li>\n \n           <li class=\"nav-item nav-item-1\"><a href=\"../documentation.html\" >Nitime Documentation</a> &#187;</li>\n           <li class=\"nav-item nav-item-2\"><a href=\"index.html\" accesskey=\"U\">Examples</a> &#187;</li>\n         <li class=\"nav-item nav-item-this\"><a href=\"\">Neuroimaging in Python</a></li> \n       </ul>\n@@ -232,16 +232,16 @@\n <li><a class=\"reference internal\" href=\"#test-1\">Test 1</a></li>\n <li><a class=\"reference internal\" href=\"#test-2\">Test 2</a></li>\n </ul>\n </li>\n </ul>\n \n   <h4>Previous topic</h4>\n-  <p class=\"topless\"><a href=\"filtering_fmri.html\"\n-                        title=\"previous chapter\">Filtering and normalizing fMRI data</a></p>\n+  <p class=\"topless\"><a href=\"seed_analysis.html\"\n+                        title=\"previous chapter\">Seed correlation/coherence with fMRI data</a></p>\n   <h4>Next topic</h4>\n   <p class=\"topless\"><a href=\"granger_fmri.html\"\n                         title=\"next chapter\">Granger \u2018causality\u2019 of fMRI data</a></p>\n <div id=\"searchbox\" style=\"display: none\" role=\"search\">\n   <h3 id=\"searchlabel\">Quick search</h3>\n     <div class=\"searchformwrapper\">\n     <form class=\"search\" action=\"../search.html\" method=\"get\">\n@@ -264,15 +264,15 @@\n         <li class=\"right\" >\n           <a href=\"../py-modindex.html\" title=\"Python Module Index\"\n              >modules</a> |</li>\n         <li class=\"right\" >\n           <a href=\"granger_fmri.html\" title=\"Granger \u2018causality\u2019 of fMRI data\"\n              >next</a> |</li>\n         <li class=\"right\" >\n-          <a href=\"filtering_fmri.html\" title=\"Filtering and normalizing fMRI data\"\n+          <a href=\"seed_analysis.html\" title=\"Seed correlation/coherence with fMRI data\"\n              >previous</a> |</li>\n   <li><a href=\"../index.html\">Nitime Home</a> |&nbsp;</li>\n \n           <li class=\"nav-item nav-item-1\"><a href=\"../documentation.html\" >Nitime Documentation</a> &#187;</li>\n           <li class=\"nav-item nav-item-2\"><a href=\"index.html\" >Examples</a> &#187;</li>\n         <li class=\"nav-item nav-item-this\"><a href=\"\">Neuroimaging in Python</a></li> \n       </ul>\n", "details": [{"source1": "html2text {}", "source2": "html2text {}", "unified_diff": "@@ -134,15 +134,15 @@\n     * Mailing_List\n     * License\n **** Table_of_Contents ****\n     * Multitaper_method_for_baseband_demodulation\n           o Test_1\n           o Test_2\n *** Previous topic ***\n-Filtering_and_normalizing_fMRI_data\n+Seed_correlation/coherence_with_fMRI_data\n *** Next topic ***\n Granger_\u00e2\u0080\u0098causality\u00e2\u0080\u0099_of_fMRI_data\n **** Quick search ****\n [q                   ] [Go]\n **** Navigation ****\n     * index\n     * modules |\n"}]}, {"source1": "./usr/share/doc/python-nitime-doc/html/examples/mtm_harmonic_test.html", "source2": "./usr/share/doc/python-nitime-doc/html/examples/mtm_harmonic_test.html", "unified_diff": "@@ -11,16 +11,16 @@\n     <link rel=\"stylesheet\" type=\"text/css\" href=\"../_static/graphviz.css\" />\n     <script id=\"documentation_options\" data-url_root=\"../\" src=\"../_static/documentation_options.js\"></script>\n     <script src=\"../_static/jquery.js\"></script>\n     <script src=\"../_static/underscore.js\"></script>\n     <script src=\"../_static/doctools.js\"></script>\n     <link rel=\"index\" title=\"Index\" href=\"../genindex.html\" />\n     <link rel=\"search\" title=\"Search\" href=\"../search.html\" />\n-    <link rel=\"next\" title=\"Seed correlation/coherence with fMRI data\" href=\"seed_analysis.html\" />\n-    <link rel=\"prev\" title=\"Multitaper spectral estimation\" href=\"multi_taper_spectral_estimation.html\" />\n+    <link rel=\"next\" title=\"Multivariate auto-regressive modeling - 3 variables\" href=\"ar_est_3vars.html\" />\n+    <link rel=\"prev\" title=\"Filtering and normalizing fMRI data\" href=\"filtering_fmri.html\" />\n   <meta name=\"keywords\" content=\"nipy, neuroimaging, python, neuroscience, time\n \t\t\t\t series\">\n \n   </head><body>\n <div style=\"background-color: white; text-align: left; padding: 10px 10px 15px 15px\">\n  <a href=\"../index.html\">\n   <img src=\"../_static/nitime-banner-bg.png\" alt=\"NIPY logo\"  border=\"0\" />\n@@ -32,18 +32,18 @@\n         <li class=\"right\" style=\"margin-right: 10px\">\n           <a href=\"../genindex.html\" title=\"General Index\"\n              accesskey=\"I\">index</a></li>\n         <li class=\"right\" >\n           <a href=\"../py-modindex.html\" title=\"Python Module Index\"\n              >modules</a> |</li>\n         <li class=\"right\" >\n-          <a href=\"seed_analysis.html\" title=\"Seed correlation/coherence with fMRI data\"\n+          <a href=\"ar_est_3vars.html\" title=\"Multivariate auto-regressive modeling - 3 variables\"\n              accesskey=\"N\">next</a> |</li>\n         <li class=\"right\" >\n-          <a href=\"multi_taper_spectral_estimation.html\" title=\"Multitaper spectral estimation\"\n+          <a href=\"filtering_fmri.html\" title=\"Filtering and normalizing fMRI data\"\n              accesskey=\"P\">previous</a> |</li>\n   <li><a href=\"../index.html\">Nitime Home</a> |&nbsp;</li>\n \n           <li class=\"nav-item nav-item-1\"><a href=\"../documentation.html\" >Nitime Documentation</a> &#187;</li>\n           <li class=\"nav-item nav-item-2\"><a href=\"index.html\" accesskey=\"U\">Examples</a> &#187;</li>\n         <li class=\"nav-item nav-item-this\"><a href=\"\">Neuroimaging in Python</a></li> \n       </ul>\n@@ -201,19 +201,19 @@\n \thref=\"http://mail.scipy.org/mailman/listinfo/nipy-devel\">Mailing List</a></li>\n     <li><a class=\"reference external\"\n \thref=\"http://nipy.sourceforge.net/software/license/index.html\">License</a></li>\n   </ul>\n \n \n   <h4>Previous topic</h4>\n-  <p class=\"topless\"><a href=\"multi_taper_spectral_estimation.html\"\n-                        title=\"previous chapter\">Multitaper spectral estimation</a></p>\n+  <p class=\"topless\"><a href=\"filtering_fmri.html\"\n+                        title=\"previous chapter\">Filtering and normalizing fMRI data</a></p>\n   <h4>Next topic</h4>\n-  <p class=\"topless\"><a href=\"seed_analysis.html\"\n-                        title=\"next chapter\">Seed correlation/coherence with fMRI data</a></p>\n+  <p class=\"topless\"><a href=\"ar_est_3vars.html\"\n+                        title=\"next chapter\">Multivariate auto-regressive modeling - 3 variables</a></p>\n <div id=\"searchbox\" style=\"display: none\" role=\"search\">\n   <h3 id=\"searchlabel\">Quick search</h3>\n     <div class=\"searchformwrapper\">\n     <form class=\"search\" action=\"../search.html\" method=\"get\">\n       <input type=\"text\" name=\"q\" aria-labelledby=\"searchlabel\" />\n       <input type=\"submit\" value=\"Go\" />\n     </form>\n@@ -230,18 +230,18 @@\n         <li class=\"right\" style=\"margin-right: 10px\">\n           <a href=\"../genindex.html\" title=\"General Index\"\n              >index</a></li>\n         <li class=\"right\" >\n           <a href=\"../py-modindex.html\" title=\"Python Module Index\"\n              >modules</a> |</li>\n         <li class=\"right\" >\n-          <a href=\"seed_analysis.html\" title=\"Seed correlation/coherence with fMRI data\"\n+          <a href=\"ar_est_3vars.html\" title=\"Multivariate auto-regressive modeling - 3 variables\"\n              >next</a> |</li>\n         <li class=\"right\" >\n-          <a href=\"multi_taper_spectral_estimation.html\" title=\"Multitaper spectral estimation\"\n+          <a href=\"filtering_fmri.html\" title=\"Filtering and normalizing fMRI data\"\n              >previous</a> |</li>\n   <li><a href=\"../index.html\">Nitime Home</a> |&nbsp;</li>\n \n           <li class=\"nav-item nav-item-1\"><a href=\"../documentation.html\" >Nitime Documentation</a> &#187;</li>\n           <li class=\"nav-item nav-item-2\"><a href=\"index.html\" >Examples</a> &#187;</li>\n         <li class=\"nav-item nav-item-this\"><a href=\"\">Neuroimaging in Python</a></li> \n       </ul>\n", "details": [{"source1": "html2text {}", "source2": "html2text {}", "unified_diff": "@@ -120,17 +120,17 @@\n     * News\n *** NIPY Community ***\n     * Community_Home\n     * NIPY_Projects\n     * Mailing_List\n     * License\n *** Previous topic ***\n-Multitaper_spectral_estimation\n+Filtering_and_normalizing_fMRI_data\n *** Next topic ***\n-Seed_correlation/coherence_with_fMRI_data\n+Multivariate_auto-regressive_modeling_-_3_variables\n **** Quick search ****\n [q                   ] [Go]\n **** Navigation ****\n     * index\n     * modules |\n     * next |\n     * previous |\n"}]}, {"source1": "./usr/share/doc/python-nitime-doc/html/examples/multi_taper_coh.html", "source2": "./usr/share/doc/python-nitime-doc/html/examples/multi_taper_coh.html", "unified_diff": "@@ -11,16 +11,16 @@\n     <link rel=\"stylesheet\" type=\"text/css\" href=\"../_static/graphviz.css\" />\n     <script id=\"documentation_options\" data-url_root=\"../\" src=\"../_static/documentation_options.js\"></script>\n     <script src=\"../_static/jquery.js\"></script>\n     <script src=\"../_static/underscore.js\"></script>\n     <script src=\"../_static/doctools.js\"></script>\n     <link rel=\"index\" title=\"Index\" href=\"../genindex.html\" />\n     <link rel=\"search\" title=\"Search\" href=\"../search.html\" />\n-    <link rel=\"next\" title=\"Fitting an AR model: algorithm module interface\" href=\"ar_est_1var.html\" />\n-    <link rel=\"prev\" title=\"Multivariate auto-regressive modeling - 3 variables\" href=\"ar_est_3vars.html\" />\n+    <link rel=\"next\" title=\"Multivariate auto-regressive modeling\" href=\"ar_est_2vars.html\" />\n+    <link rel=\"prev\" title=\"Granger \u2018causality\u2019 of fMRI data\" href=\"granger_fmri.html\" />\n   <meta name=\"keywords\" content=\"nipy, neuroimaging, python, neuroscience, time\n \t\t\t\t series\">\n \n   </head><body>\n <div style=\"background-color: white; text-align: left; padding: 10px 10px 15px 15px\">\n  <a href=\"../index.html\">\n   <img src=\"../_static/nitime-banner-bg.png\" alt=\"NIPY logo\"  border=\"0\" />\n@@ -32,18 +32,18 @@\n         <li class=\"right\" style=\"margin-right: 10px\">\n           <a href=\"../genindex.html\" title=\"General Index\"\n              accesskey=\"I\">index</a></li>\n         <li class=\"right\" >\n           <a href=\"../py-modindex.html\" title=\"Python Module Index\"\n              >modules</a> |</li>\n         <li class=\"right\" >\n-          <a href=\"ar_est_1var.html\" title=\"Fitting an AR model: algorithm module interface\"\n+          <a href=\"ar_est_2vars.html\" title=\"Multivariate auto-regressive modeling\"\n              accesskey=\"N\">next</a> |</li>\n         <li class=\"right\" >\n-          <a href=\"ar_est_3vars.html\" title=\"Multivariate auto-regressive modeling - 3 variables\"\n+          <a href=\"granger_fmri.html\" title=\"Granger \u2018causality\u2019 of fMRI data\"\n              accesskey=\"P\">previous</a> |</li>\n   <li><a href=\"../index.html\">Nitime Home</a> |&nbsp;</li>\n \n           <li class=\"nav-item nav-item-1\"><a href=\"../documentation.html\" >Nitime Documentation</a> &#187;</li>\n           <li class=\"nav-item nav-item-2\"><a href=\"index.html\" accesskey=\"U\">Examples</a> &#187;</li>\n         <li class=\"nav-item nav-item-this\"><a href=\"\">Neuroimaging in Python</a></li> \n       </ul>\n@@ -309,19 +309,19 @@\n \thref=\"http://mail.scipy.org/mailman/listinfo/nipy-devel\">Mailing List</a></li>\n     <li><a class=\"reference external\"\n \thref=\"http://nipy.sourceforge.net/software/license/index.html\">License</a></li>\n   </ul>\n \n \n   <h4>Previous topic</h4>\n-  <p class=\"topless\"><a href=\"ar_est_3vars.html\"\n-                        title=\"previous chapter\">Multivariate auto-regressive modeling - 3 variables</a></p>\n+  <p class=\"topless\"><a href=\"granger_fmri.html\"\n+       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   </ul>\n", "details": [{"source1": "html2text {}", "source2": "html2text {}", "unified_diff": "@@ -199,17 +199,17 @@\n     * News\n *** NIPY Community ***\n     * Community_Home\n     * NIPY_Projects\n     * Mailing_List\n     * License\n *** Previous topic ***\n-Multivariate_auto-regressive_modeling_-_3_variables\n+Granger_\u00e2\u0080\u0098causality\u00e2\u0080\u0099_of_fMRI_data\n *** Next topic ***\n-Fitting_an_AR_model:_algorithm_module_interface\n+Multivariate_auto-regressive_modeling\n **** Quick search ****\n [q                   ] [Go]\n **** Navigation ****\n     * index\n     * modules |\n     * next |\n     * previous |\n"}]}, {"source1": "./usr/share/doc/python-nitime-doc/html/examples/multi_taper_spectral_estimation.html", "source2": "./usr/share/doc/python-nitime-doc/html/examples/multi_taper_spectral_estimation.html", "unified_diff": "@@ -11,16 +11,16 @@\n     <link rel=\"stylesheet\" type=\"text/css\" href=\"../_static/graphviz.css\" />\n     <script id=\"documentation_options\" data-url_root=\"../\" src=\"../_static/documentation_options.js\"></script>\n     <script src=\"../_static/jquery.js\"></script>\n     <script src=\"../_static/underscore.js\"></script>\n     <script src=\"../_static/doctools.js\"></script>\n     <link rel=\"index\" title=\"Index\" href=\"../genindex.html\" />\n     <link rel=\"search\" title=\"Search\" href=\"../search.html\" />\n-    <link rel=\"next\" title=\"Multitaper F-test for harmonic components\" href=\"mtm_harmonic_test.html\" />\n-    <link rel=\"prev\" title=\"Fitting an AR model: algorithm module interface\" href=\"ar_est_1var.html\" />\n+    <link rel=\"next\" title=\"Event-related fMRI\" href=\"event_related_fmri.html\" />\n+    <link rel=\"prev\" title=\"Examples\" href=\"index.html\" />\n   <meta name=\"keywords\" content=\"nipy, neuroimaging, python, neuroscience, time\n \t\t\t\t series\">\n \n   </head><body>\n <div style=\"background-color: white; text-align: left; padding: 10px 10px 15px 15px\">\n  <a href=\"../index.html\">\n   <img src=\"../_static/nitime-banner-bg.png\" alt=\"NIPY logo\"  border=\"0\" />\n@@ -32,18 +32,18 @@\n         <li class=\"right\" style=\"margin-right: 10px\">\n           <a href=\"../genindex.html\" title=\"General Index\"\n              accesskey=\"I\">index</a></li>\n         <li class=\"right\" >\n           <a href=\"../py-modindex.html\" title=\"Python Module Index\"\n              >modules</a> |</li>\n         <li class=\"right\" >\n-          <a href=\"mtm_harmonic_test.html\" title=\"Multitaper F-test for harmonic components\"\n+          <a href=\"event_related_fmri.html\" title=\"Event-related fMRI\"\n              accesskey=\"N\">next</a> |</li>\n         <li class=\"right\" >\n-          <a href=\"ar_est_1var.html\" title=\"Fitting an AR model: algorithm module interface\"\n+          <a href=\"index.html\" title=\"Examples\"\n              accesskey=\"P\">previous</a> |</li>\n   <li><a href=\"../index.html\">Nitime Home</a> 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*** Previous topic ***\n-Fitting_an_AR_model:_algorithm_module_interface\n+Examples\n *** Next topic ***\n-Multitaper_F-test_for_harmonic_components\n+Event-related_fMRI\n **** Quick search ****\n [q                   ] [Go]\n **** Navigation ****\n     * index\n     * modules |\n     * next |\n     * previous |\n"}]}, {"source1": "./usr/share/doc/python-nitime-doc/html/examples/resting_state_fmri.html", "source2": "./usr/share/doc/python-nitime-doc/html/examples/resting_state_fmri.html", "unified_diff": "@@ -11,16 +11,16 @@\n     <link rel=\"stylesheet\" type=\"text/css\" href=\"../_static/graphviz.css\" />\n     <script id=\"documentation_options\" data-url_root=\"../\" src=\"../_static/documentation_options.js\"></script>\n     <script src=\"../_static/jquery.js\"></script>\n     <script src=\"../_static/underscore.js\"></script>\n     <script src=\"../_static/doctools.js\"></script>\n     <link rel=\"index\" title=\"Index\" href=\"../genindex.html\" />\n     <link rel=\"search\" 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class=\"right\" >\n           <a href=\"../py-modindex.html\" title=\"Python Module Index\"\n              >modules</a> |</li>\n         <li class=\"right\" >\n-          <a href=\"ar_est_3vars.html\" title=\"Multivariate auto-regressive modeling - 3 variables\"\n+          <a href=\"../discussion/index.html\" title=\"Discussion\"\n              accesskey=\"N\">next</a> |</li>\n         <li class=\"right\" >\n-          <a href=\"ar_model_fit.html\" title=\"Fitting an MAR model: analyzer interface\"\n+          <a href=\"snr_example.html\" title=\"Calculation of signal-to-noise and information\"\n              accesskey=\"P\">previous</a> |</li>\n   <li><a href=\"../index.html\">Nitime Home</a> |&nbsp;</li>\n \n           <li class=\"nav-item nav-item-1\"><a href=\"../documentation.html\" >Nitime Documentation</a> &#187;</li>\n           <li class=\"nav-item nav-item-2\"><a href=\"index.html\" accesskey=\"U\">Examples</a> &#187;</li>\n         <li class=\"nav-item nav-item-this\"><a href=\"\">Neuroimaging in Python</a></li> \n       </ul>\n@@ -350,19 +350,19 @@\n \thref=\"http://mail.scipy.org/mailman/listinfo/nipy-devel\">Mailing List</a></li>\n     <li><a class=\"reference external\"\n \thref=\"http://nipy.sourceforge.net/software/license/index.html\">License</a></li>\n   </ul>\n \n \n   <h4>Previous topic</h4>\n-  <p class=\"topless\"><a href=\"ar_model_fit.html\"\n-                        title=\"previous chapter\">Fitting an MAR model: analyzer interface</a></p>\n+  <p class=\"topless\"><a href=\"snr_example.html\"\n+                        title=\"previous chapter\">Calculation of signal-to-noise and information</a></p>\n   <h4>Next topic</h4>\n-  <p class=\"topless\"><a href=\"ar_est_3vars.html\"\n-                        title=\"next chapter\">Multivariate auto-regressive modeling - 3 variables</a></p>\n+  <p class=\"topless\"><a href=\"../discussion/index.html\"\n+                        title=\"next chapter\">Discussion</a></p>\n <div id=\"searchbox\" 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****\n [q                   ] [Go]\n **** Navigation ****\n     * index\n     * modules |\n     * next |\n     * previous |\n"}]}, {"source1": "./usr/share/doc/python-nitime-doc/html/examples/seed_analysis.html", "source2": "./usr/share/doc/python-nitime-doc/html/examples/seed_analysis.html", "unified_diff": "@@ -11,16 +11,16 @@\n     <link rel=\"stylesheet\" type=\"text/css\" href=\"../_static/graphviz.css\" />\n     <script id=\"documentation_options\" data-url_root=\"../\" src=\"../_static/documentation_options.js\"></script>\n     <script src=\"../_static/jquery.js\"></script>\n     <script src=\"../_static/underscore.js\"></script>\n     <script src=\"../_static/doctools.js\"></script>\n     <link rel=\"index\" title=\"Index\" href=\"../genindex.html\" />\n     <link rel=\"search\" title=\"Search\" href=\"../search.html\" />\n-    <link rel=\"next\" title=\"Discussion\" href=\"../discussion/index.html\" />\n-    <link rel=\"prev\" title=\"Multitaper F-test for harmonic 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"./usr/share/doc/python-nitime-doc/html/examples/snr_example.html", "unified_diff": "@@ -11,16 +11,16 @@\n     <link rel=\"stylesheet\" type=\"text/css\" href=\"../_static/graphviz.css\" />\n     <script id=\"documentation_options\" data-url_root=\"../\" src=\"../_static/documentation_options.js\"></script>\n     <script src=\"../_static/jquery.js\"></script>\n     <script src=\"../_static/underscore.js\"></script>\n     <script src=\"../_static/doctools.js\"></script>\n     <link rel=\"index\" title=\"Index\" href=\"../genindex.html\" />\n     <link rel=\"search\" title=\"Search\" href=\"../search.html\" />\n-    <link rel=\"next\" title=\"Auditory processing in grasshoppers\" href=\"grasshopper.html\" />\n-    <link rel=\"prev\" title=\"Multivariate auto-regressive modeling\" href=\"ar_est_2vars.html\" />\n+    <link rel=\"next\" title=\"Coherency analysis of fMRI data\" href=\"resting_state_fmri.html\" />\n+    <link rel=\"prev\" title=\"Auditory processing in grasshoppers\" 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