{"diffoscope-json-version": 1, "source1": "/srv/reproducible-results/rbuild-debian/r-b-build.2eZj3vrG/b1/python-cogent_2023.2.12a1+dfsg-2+deb12u1_amd64.changes", "source2": "/srv/reproducible-results/rbuild-debian/r-b-build.2eZj3vrG/b2/python-cogent_2023.2.12a1+dfsg-2+deb12u1_amd64.changes", "unified_diff": null, "details": [{"source1": "Files", "source2": "Files", "unified_diff": "@@ -1,3 +1,3 @@\n \n- 9aa77bd04d91d55db634e668143e8cec 733516 doc optional python-cogent-doc_2023.2.12a1+dfsg-2+deb12u1_all.deb\n+ 0ae1475d737894a581e97c9c21ae27ca 733508 doc optional python-cogent-doc_2023.2.12a1+dfsg-2+deb12u1_all.deb\n a04c854946527c80ff014af3c64a4515 1895936 python optional python3-cogent3_2023.2.12a1+dfsg-2+deb12u1_amd64.deb\n"}, {"source1": "python-cogent-doc_2023.2.12a1+dfsg-2+deb12u1_all.deb", "source2": "python-cogent-doc_2023.2.12a1+dfsg-2+deb12u1_all.deb", "unified_diff": null, "details": [{"source1": "file list", "source2": "file list", "unified_diff": "@@ -1,3 +1,3 @@\n -rw-r--r-- 0 0 0 4 2023-10-29 20:45:00.000000 debian-binary\n -rw-r--r-- 0 0 0 10360 2023-10-29 20:45:00.000000 control.tar.xz\n--rw-r--r-- 0 0 0 722964 2023-10-29 20:45:00.000000 data.tar.xz\n+-rw-r--r-- 0 0 0 722956 2023-10-29 20:45:00.000000 data.tar.xz\n"}, {"source1": "control.tar.xz", "source2": "control.tar.xz", "unified_diff": null, "details": [{"source1": "control.tar", "source2": "control.tar", "unified_diff": null, "details": [{"source1": "./md5sums", "source2": "./md5sums", "unified_diff": null, "details": [{"source1": "./md5sums", "source2": "./md5sums", "comments": ["Files differ"], "unified_diff": null}]}]}]}, {"source1": "data.tar.xz", "source2": "data.tar.xz", "unified_diff": null, "details": [{"source1": "data.tar", "source2": "data.tar", "unified_diff": null, "details": [{"source1": "./usr/share/doc/python-cogent-doc/html/api/tree/classes/cogent3.core.tree.PhyloNode.html", "source2": "./usr/share/doc/python-cogent-doc/html/api/tree/classes/cogent3.core.tree.PhyloNode.html", "unified_diff": "@@ -287,15 +287,15 @@\n

Note: names present in only one of the two trees will count as\n mismatches: if you don\u2019t want this behavior, strip out the non-matching\n tips first.

\n \n \n
\n
\n-compare_by_tip_distances(other, sample=None, dist_f=<function distance_from_r>, shuffle_f=<bound method Random.shuffle of <random.Random object at 0x2454e50>>)\u00b6
\n+compare_by_tip_distances(other, sample=None, dist_f=<function distance_from_r>, shuffle_f=<bound method Random.shuffle of <random.Random object at 0x2276690>>)\u00b6\n

Compares self to other using tip-to-tip distance matrices.

\n

Value returned is dist_f(m1, m2) for the two matrices. Default is\n to use the Pearson correlation coefficient, with +1 giving a distance\n of 0 and -1 giving a distance of +1 (the madimum possible value).\n Depending on the application, you might instead want to use\n distance_from_r_squared, which counts correlations of both +1 and -1\n as identical (0 distance).

\n", "details": [{"source1": "html2text {}", "source2": "html2text {}", "unified_diff": "@@ -144,15 +144,15 @@\n differ.\n Other is expected to be a tree object compatible with PhyloNode.\n Note: names present in only one of the two trees will count as\n mismatches: if you don\u00e2\u0080\u0099t want this behavior, strip out the non-\n matching tips first.\n compare_by_tip_distances(other, sample=None, dist_f=, shuffle_f=>)\u00c2\u00b6\n+ >)\u00c2\u00b6\n Compares self to other using tip-to-tip distance matrices.\n Value returned is dist_f(m1, m2) for the two matrices. Default is\n to use the Pearson correlation coefficient, with +1 giving a\n distance of 0 and -1 giving a distance of +1 (the madimum possible\n value). Depending on the application, you might instead want to use\n distance_from_r_squared, which counts correlations of both +1 and -\n 1 as identical (0 distance).\n"}]}, {"source1": "./usr/share/doc/python-cogent-doc/html/searchindex.js", "source2": "./usr/share/doc/python-cogent-doc/html/searchindex.js", "unified_diff": null, "details": [{"source1": "js-beautify {}", "source2": "js-beautify {}", "unified_diff": "@@ -1629,15 +1629,15 @@\n \"compare_by_nam\": 38,\n \"compare_by_subset\": 38,\n \"exclude_absent_taxa\": 38,\n \"compare_by_tip_dist\": 38,\n \"dist_f\": 38,\n \"distance_from_r\": 38,\n \"shuffle_f\": 38,\n- \"0x2454e50\": 38,\n+ \"0x2276690\": 38,\n \"m1\": 38,\n \"m2\": 38,\n \"pearson\": [38, 80],\n \"correl\": [38, 80, 102],\n \"coeffici\": 38,\n \"madimum\": 38,\n \"applic\": [38, 49, 66, 124],\n"}]}]}]}]}]}